RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2802
         (74 letters)



>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat
           (Rattus norvegicus), GluR2 [TaxId: 10116]}
          Length = 260

 Score = 49.6 bits (117), Expect = 2e-09
 Identities = 41/74 (55%), Positives = 53/74 (71%)

Query: 1   MYYFMQMHKDKVFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDV 60
           M+ +M+  +  VFV +  EGV +VR S GKYA+L+ES  N+Y   R+PCDTMKVG NLD 
Sbjct: 156 MWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDS 215

Query: 61  KGFGVATPIGSPLK 74
           KG+G+ATP GS L 
Sbjct: 216 KGYGIATPKGSSLG 229


>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand
           binding core {Rat (Rattus norvegicus), GluR5 [TaxId:
           10116]}
          Length = 246

 Score = 34.8 bits (78), Expect = 3e-04
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 1   MYYFMQMHKDKVFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDV 60
           M+ FM   +    V +  EG+ +V      YA L+ES   +Y   ++ C+  ++G  +D 
Sbjct: 151 MWAFMSSRQQSALVKNSDEGIQRVL--TTDYALLMESTSIEY-VTQRNCNLTQIGGLIDS 207

Query: 61  KGFGVATPIGSPLK 74
           KG+GV TPIGSP +
Sbjct: 208 KGYGVGTPIGSPYR 221


>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 289

 Score = 28.9 bits (63), Expect = 0.045
 Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 5   MQMHKDKVFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGFG 64
           M  H +K    S  E +  VR    K    I         A Q CD +  G      GFG
Sbjct: 191 MYRHMEKHNYESAAEAIQAVRD--NKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFG 248

Query: 65  VATPIGSPLK 74
           +     SP K
Sbjct: 249 IGMRKDSPWK 258


>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor
           subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId:
           10116]}
          Length = 277

 Score = 25.0 bits (53), Expect = 0.96
 Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 2/76 (2%)

Query: 1   MYYFMQMHKDKVFVSSETEGVNKVRSSHGKYAFLIESPRNDYENARQPCDTMKVGN--NL 58
            Y +M  +  +       + +  +++          +  N      + C  + +G+    
Sbjct: 173 NYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIF 232

Query: 59  DVKGFGVATPIGSPLK 74
              G+G+A   GSP K
Sbjct: 233 ATTGYGIALQKGSPWK 248


>d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C
           acetyltransferase CefG {Acremonium chrysogenum [TaxId:
           5044]}
          Length = 376

 Score = 24.4 bits (52), Expect = 1.4
 Identities = 4/16 (25%), Positives = 10/16 (62%)

Query: 24  VRSSHGKYAFLIESPR 39
           V ++ G   F++E+ +
Sbjct: 350 VDTNEGHDFFVMEADK 365


>d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase
           {Leptospira interrogans [TaxId: 173]}
          Length = 362

 Score = 23.9 bits (51), Expect = 2.6
 Identities = 5/17 (29%), Positives = 13/17 (76%)

Query: 23  KVRSSHGKYAFLIESPR 39
           +++S  G  +FL+++P+
Sbjct: 333 ELQSGEGHDSFLLKNPK 349


>d1k0ga_ d.161.1.1 (A:) P-aminobenzoate synthase component I
          {Escherichia coli [TaxId: 562]}
          Length = 453

 Score = 23.4 bits (49), Expect = 3.8
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 6/37 (16%)

Query: 27 SHGKYAFLIESPRNDYENAR------QPCDTMKVGNN 57
          SH  +A L+ S   D+  +R      +P  T+     
Sbjct: 26 SHLPWAMLLHSGYADHPYSRFDIVVAEPICTLTTFGK 62


>d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase
           {Haemophilus influenzae [TaxId: 727]}
          Length = 357

 Score = 22.8 bits (48), Expect = 6.1
 Identities = 5/17 (29%), Positives = 10/17 (58%)

Query: 23  KVRSSHGKYAFLIESPR 39
           +  S +G  AFL++  +
Sbjct: 329 EFPSDYGHDAFLVDYDQ 345


>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 190

 Score = 22.4 bits (48), Expect = 6.8
 Identities = 7/35 (20%), Positives = 13/35 (37%)

Query: 29  GKYAFLIESPRNDYENARQPCDTMKVGNNLDVKGF 63
              A  ++SP  +      P    K+    ++K F
Sbjct: 81  SDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIF 115


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0490    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 250,848
Number of extensions: 8300
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 10
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.5 bits)