BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2803
(141 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O21|A Chain A, High Resolution Structure Of Glua3 N-Terminal Domain
(Ntd)
pdb|3O21|B Chain B, High Resolution Structure Of Glua3 N-Terminal Domain
(Ntd)
pdb|3O21|C Chain C, High Resolution Structure Of Glua3 N-Terminal Domain
(Ntd)
pdb|3O21|D Chain D, High Resolution Structure Of Glua3 N-Terminal Domain
(Ntd)
pdb|3P3W|A Chain A, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|B Chain B, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|C Chain C, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|D Chain D, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
Length = 389
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 16 IGLGAIFEQGTDEVQSAFKFA--MLTHNQNTTTRRFELQAYVDVINTADAFKLS 67
I +G +F + T + SAF+FA + NQNTT + F L +VD ++++++F ++
Sbjct: 6 ISIGGLFMRNTVQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVT 59
>pdb|4GPA|A Chain A, High Resolution Structure Of The Glua4 N-Terminal Domain
(Ntd)
Length = 389
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 16 IGLGAIFEQGTDEVQSAFKFAMLTHNQ--NTTTRRFELQAYVDVINTADAFKLS 67
+ +G +F + TD+ +AF+ A+ HN N + F L +VD I TA++F ++
Sbjct: 6 VQIGGLFIRNTDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVT 59
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex
With Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex
With Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex
With Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex
With Competitive Antagonist Zk 200775
Length = 823
Score = 33.1 bits (74), Expect = 0.059, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 16 IGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLS 67
I +G +F +G D+ SAF+ M+ +T F L ++D + A++F ++
Sbjct: 3 IQIGGLFPRGADQEYSAFRVGMVQF----STSEFRLTPHIDNLEVANSFAVT 50
>pdb|3H5V|A Chain A, Crystal Structure Of The Glur2-atd
pdb|3H5V|B Chain B, Crystal Structure Of The Glur2-atd
pdb|3H5V|C Chain C, Crystal Structure Of The Glur2-atd
pdb|3H5W|A Chain A, Crystal Structure Of The Glur2-Atd In Space Group
P212121 Without Solvent
pdb|3H5W|B Chain B, Crystal Structure Of The Glur2-Atd In Space Group
P212121 Without Solvent
Length = 394
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 14 HHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLS 67
+ I +G +F +G D+ SAF+ M+ +T F L ++D + A++F ++
Sbjct: 9 NSIQIGGLFPRGADQEYSAFRVGMVQF----STSEFRLTPHIDNLEVANSFAVT 58
>pdb|2WJW|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 1.8 A Resolution
pdb|2WJX|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|B Chain B, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|C Chain C, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
Length = 388
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 14 HHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLS 67
+ I +G +F +G D+ SAF+ M+ +T F L ++D + A++F ++
Sbjct: 1 NSIQIGGLFPRGADQEYSAFRVGMVQF----STSEFRLTPHIDNLEVANSFAVT 50
>pdb|3HSY|A Chain A, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
pdb|3HSY|B Chain B, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
Length = 376
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 14 HHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLS 67
+ I +G +F +G D+ SAF+ M+ +T F L ++D + A++F ++
Sbjct: 1 NSIQIGGLFPRGADQEYSAFRVGMVQF----STSEFRLTPHIDNLEVANSFAVT 50
>pdb|3O2J|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
pdb|3O2J|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
Length = 388
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 14 HHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLS 67
+ I +G +F +G D+ SAF+ M+ +T F L ++D + A++F ++
Sbjct: 4 NSIQIGGLFPRGADQEYSAFRVGMVQF----STSEFRLTPHIDNLEVANSFAVT 53
>pdb|3N6V|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|C Chain C, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|D Chain D, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|E Chain E, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|F Chain F, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
Length = 374
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 16 IGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLS 67
I +G +F +G D+ SAF+ M+ +T F L ++D + A++F ++
Sbjct: 1 IQIGGLFPRGADQEYSAFRVGMVQF----STSEFRLTPHIDNLEVANSFAVT 48
>pdb|1B0N|B Chain B, Sinr ProteinSINI PROTEIN COMPLEX
Length = 57
Score = 28.9 bits (63), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 42 QNTTTRRFEL-QAYVDVINTADAFKLSRLSIRKMLVTNLMSLHSSP 86
+N FEL Q +V+++ A +S IRK L+ N S H P
Sbjct: 2 KNAKQEHFELDQEWVELMVEAKEANISPEEIRKYLLLNKKSAHPGP 47
>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-SulfoquinovoseUDP-Glucose
pdb|1I2C|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-Glucose
Length = 404
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 14 HHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQA 53
H + LGA+ E GT + + +THN T T + QA
Sbjct: 149 HLVKLGAMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQA 188
>pdb|3SAJ|A Chain A, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|B Chain B, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|C Chain C, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|D Chain D, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
Length = 384
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 14 HHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLS 67
++I +G +F + +AF+FA+ + T +L +D++N +D+F+++
Sbjct: 9 NNIQIGGLFPNQQSQEHAAFRFAL-----SQLTEPPKLLPQIDIVNISDSFEMT 57
>pdb|3B6N|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase Pv003920 From Plasmodium Vivax
Length = 187
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 18 LGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKMLVT 77
LG +F G+ + ++ + L + + +R A VD+I A+ K+S IR+ +V
Sbjct: 85 LGTLFPDGSPKYKNKNSLSFLRYARLLLYKRNYAIANVDIIVIAEVPKIS--PIREEIVR 142
Query: 78 NLMS 81
N+ S
Sbjct: 143 NISS 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.137 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,430,435
Number of Sequences: 62578
Number of extensions: 108421
Number of successful extensions: 296
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 12
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)