BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2803
(141 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03445|GLK1_DROME Glutamate receptor 1 OS=Drosophila melanogaster GN=Glu-RI PE=2
SV=2
Length = 991
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 4 QKEMLISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADA 63
Q++ +SL I LGAIFEQGTD+VQSAFK+AML HN N ++RRFELQAYVDVINTADA
Sbjct: 29 QQQQTVSLT-EKIPLGAIFEQGTDDVQSAFKYAMLNHNLNVSSRRFELQAYVDVINTADA 87
Query: 64 FKLSRL 69
FKLSRL
Sbjct: 88 FKLSRL 93
>sp|P19492|GRIA3_RAT Glutamate receptor 3 OS=Rattus norvegicus GN=Gria3 PE=1 SV=1
Length = 888
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 16 IGLGAIFEQGTDEVQSAFKFA--MLTHNQNTTTRRFELQAYVDVINTADAFKLS 67
I +G +F + T + SAF+FA + NQNTT + F L +VD ++++++F ++
Sbjct: 28 ISIGGLFMRNTVQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVT 81
>sp|Q38PU6|GRIA3_MACFA Glutamate receptor 3 OS=Macaca fascicularis GN=GRIA3 PE=2 SV=1
Length = 894
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 16 IGLGAIFEQGTDEVQSAFKFA--MLTHNQNTTTRRFELQAYVDVINTADAFKLS 67
I +G +F + T + SAF+FA + NQNTT + F L +VD ++++++F ++
Sbjct: 34 ISIGGLFMRNTVQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVT 87
>sp|P42263|GRIA3_HUMAN Glutamate receptor 3 OS=Homo sapiens GN=GRIA3 PE=1 SV=2
Length = 894
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 16 IGLGAIFEQGTDEVQSAFKFA--MLTHNQNTTTRRFELQAYVDVINTADAFKLS 67
I +G +F + T + SAF+FA + NQNTT + F L +VD ++++++F ++
Sbjct: 34 ISIGGLFMRNTVQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVT 87
>sp|Q9Z2W9|GRIA3_MOUSE Glutamate receptor 3 OS=Mus musculus GN=Gria3 PE=1 SV=2
Length = 888
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 16 IGLGAIFEQGTDEVQSAFKFA--MLTHNQNTTTRRFELQAYVDVINTADAFKLS 67
I +G +F + T + SAF+FA + NQNTT + F L +VD ++++++F ++
Sbjct: 28 ISIGGLFMRNTVQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVT 81
>sp|P19493|GRIA4_RAT Glutamate receptor 4 OS=Rattus norvegicus GN=Gria4 PE=1 SV=1
Length = 902
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 16 IGLGAIFEQGTDEVQSAFKFAMLTHNQ--NTTTRRFELQAYVDVINTADAFKLS 67
+ +G +F + TD+ +AF+ A+ HN N + F L +VD I TA++F ++
Sbjct: 27 VQIGGLFIRNTDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVT 80
>sp|Q9Z2W8|GRIA4_MOUSE Glutamate receptor 4 OS=Mus musculus GN=Gria4 PE=1 SV=2
Length = 902
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 16 IGLGAIFEQGTDEVQSAFKFAMLTHNQ--NTTTRRFELQAYVDVINTADAFKLS 67
+ +G +F + TD+ +AF+ A+ HN N + F L +VD I TA++F ++
Sbjct: 27 VQIGGLFIRNTDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVT 80
>sp|Q38PU5|GRIA4_MACFA Glutamate receptor 4 OS=Macaca fascicularis GN=GRIA4 PE=2 SV=1
Length = 902
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 16 IGLGAIFEQGTDEVQSAFKFAMLTHNQ--NTTTRRFELQAYVDVINTADAFKLS 67
+ +G +F + TD+ +AF+ A+ HN N + F L +VD I TA++F ++
Sbjct: 27 VQIGGLFIRNTDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVT 80
>sp|P48058|GRIA4_HUMAN Glutamate receptor 4 OS=Homo sapiens GN=GRIA4 PE=2 SV=2
Length = 902
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 16 IGLGAIFEQGTDEVQSAFKFAMLTHNQ--NTTTRRFELQAYVDVINTADAFKLS 67
+ +G +F + TD+ +AF+ A+ HN N + F L +VD I TA++F ++
Sbjct: 27 VQIGGLFIRNTDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVT 80
>sp|P19491|GRIA2_RAT Glutamate receptor 2 OS=Rattus norvegicus GN=Gria2 PE=1 SV=2
Length = 883
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 7 MLISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKL 66
++ + + I +G +F +G D+ SAF+ M+ +T F L ++D + A++F +
Sbjct: 18 LIFGVSSNSIQIGGLFPRGADQEYSAFRVGMVQF----STSEFRLTPHIDNLEVANSFAV 73
Query: 67 S 67
+
Sbjct: 74 T 74
>sp|Q5R4M0|GRIA2_PONAB Glutamate receptor 2 OS=Pongo abelii GN=GRIA2 PE=2 SV=1
Length = 883
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 7 MLISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKL 66
++ + + I +G +F +G D+ SAF+ M+ +T F L ++D + A++F +
Sbjct: 18 LIFGVSSNSIQIGGLFPRGADQEYSAFRVGMVQF----STSEFRLTPHIDNLEVANSFAV 73
Query: 67 S 67
+
Sbjct: 74 T 74
>sp|P23819|GRIA2_MOUSE Glutamate receptor 2 OS=Mus musculus GN=Gria2 PE=1 SV=3
Length = 883
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 7 MLISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKL 66
++ + + I +G +F +G D+ SAF+ M+ +T F L ++D + A++F +
Sbjct: 18 LIFGVSSNSIQIGGLFPRGADQEYSAFRVGMVQF----STSEFRLTPHIDNLEVANSFAV 73
Query: 67 S 67
+
Sbjct: 74 T 74
>sp|Q38PU7|GRIA2_MACFA Glutamate receptor 2 OS=Macaca fascicularis GN=GRIA2 PE=2 SV=1
Length = 883
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 7 MLISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKL 66
++ + + I +G +F +G D+ SAF+ M+ +T F L ++D + A++F +
Sbjct: 18 LIFGVSSNSIQIGGLFPRGADQEYSAFRVGMVQF----STSEFRLTPHIDNLEVANSFAV 73
Query: 67 S 67
+
Sbjct: 74 T 74
>sp|P42262|GRIA2_HUMAN Glutamate receptor 2 OS=Homo sapiens GN=GRIA2 PE=1 SV=3
Length = 883
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 7 MLISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKL 66
++ + + I +G +F +G D+ SAF+ M+ +T F L ++D + A++F +
Sbjct: 18 LIFGVSSNSIQIGGLFPRGADQEYSAFRVGMVQF----STSEFRLTPHIDNLEVANSFAV 73
Query: 67 S 67
+
Sbjct: 74 T 74
>sp|Q89YY3|CLPB_BACTN Chaperone protein ClpB OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=clpB
PE=3 SV=1
Length = 862
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 71 IRKMLVTNLMSLHSSPNLINFMTRLGFEPKF 101
++KML N + L + +NF++++G++P+F
Sbjct: 787 VQKMLAENGVELEMTDAALNFLSQVGYDPEF 817
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.137 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,254,628
Number of Sequences: 539616
Number of extensions: 1427285
Number of successful extensions: 3684
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3677
Number of HSP's gapped (non-prelim): 17
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)