Query psy2803
Match_columns 141
No_of_seqs 106 out of 159
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 17:21:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2803.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2803hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06387 PBP1_iGluR_AMPA_GluR3 99.6 4.2E-16 9.2E-21 133.4 5.3 80 17-96 1-96 (372)
2 cd06389 PBP1_iGluR_AMPA_GluR2 99.6 1.1E-15 2.3E-20 128.8 4.8 75 17-95 1-89 (370)
3 cd06388 PBP1_iGluR_AMPA_GluR4 99.6 1.8E-15 3.9E-20 128.1 5.2 79 17-95 1-95 (371)
4 cd06390 PBP1_iGluR_AMPA_GluR1 99.6 2E-15 4.4E-20 127.9 3.9 73 17-94 1-87 (364)
5 cd06377 PBP1_iGluR_NMDA_NR3 N- 99.5 1.9E-14 4E-19 125.4 5.9 90 3-93 6-112 (382)
6 cd06392 PBP1_iGluR_delta_1 N-t 99.4 9.2E-14 2E-18 120.8 5.5 76 18-93 2-92 (400)
7 cd06391 PBP1_iGluR_delta_2 N-t 99.3 4.1E-12 8.8E-17 109.4 5.0 76 17-92 1-91 (400)
8 cd06380 PBP1_iGluR_AMPA N-term 99.2 1.6E-11 3.5E-16 101.6 5.0 70 17-86 1-74 (382)
9 cd06394 PBP1_iGluR_Kainate_KA1 99.0 9E-10 2E-14 93.3 6.1 69 17-85 1-76 (333)
10 cd06381 PBP1_iGluR_delta_like 98.9 8.2E-10 1.8E-14 93.8 4.9 70 17-86 1-74 (363)
11 KOG1054|consensus 98.9 1.4E-09 3E-14 101.2 5.4 78 9-86 20-102 (897)
12 cd06393 PBP1_iGluR_Kainate_Glu 98.8 5.5E-09 1.2E-13 87.6 5.0 72 15-86 2-84 (384)
13 cd06351 PBP1_iGluR_N_LIVBP_lik 98.7 3.8E-08 8.3E-13 77.7 6.1 80 17-96 1-96 (328)
14 cd06383 PBP1_iGluR_AMPA_Like N 98.6 3.8E-08 8.1E-13 83.9 5.2 65 21-85 6-78 (368)
15 cd06379 PBP1_iGluR_NMDA_NR1 N- 98.4 4.6E-07 1E-11 75.4 6.5 69 9-80 13-86 (377)
16 cd06382 PBP1_iGluR_Kainate N-t 98.4 4.6E-07 1E-11 73.3 6.0 70 17-86 1-75 (327)
17 cd06368 PBP1_iGluR_non_NMDA_li 98.4 9.5E-07 2E-11 70.9 6.3 71 17-87 1-75 (324)
18 cd06367 PBP1_iGluR_NMDA N-term 98.1 3.2E-06 6.9E-11 69.7 4.9 69 15-86 2-75 (362)
19 cd06370 PBP1_Speract_GC_like L 96.5 0.0055 1.2E-07 51.9 5.9 69 16-85 1-80 (404)
20 cd06269 PBP1_glutamate_recepto 96.4 0.0047 1E-07 47.1 4.1 68 17-86 1-83 (298)
21 cd06366 PBP1_GABAb_receptor Li 96.4 0.0092 2E-07 48.7 5.9 69 17-86 1-78 (350)
22 cd06375 PBP1_mGluR_groupII Lig 96.2 0.0054 1.2E-07 53.6 4.2 59 28-86 31-117 (458)
23 cd06376 PBP1_mGluR_groupIII Li 96.2 0.0032 7E-08 54.4 2.8 58 29-86 32-115 (463)
24 PF01094 ANF_receptor: Recepto 96.1 0.009 2E-07 47.3 4.7 57 29-85 2-62 (348)
25 cd06365 PBP1_Pheromone_recepto 96.0 0.0027 5.9E-08 55.5 1.4 61 26-86 38-115 (469)
26 cd06372 PBP1_GC_G_like Ligand- 95.6 0.031 6.7E-07 46.7 6.0 57 28-86 18-80 (391)
27 cd06386 PBP1_NPR_C_like Ligand 95.6 0.015 3.2E-07 49.3 4.0 60 27-86 17-79 (387)
28 cd06378 PBP1_iGluR_NMDA_NR2 N- 94.9 0.016 3.5E-07 49.5 2.1 67 16-85 3-74 (362)
29 cd06362 PBP1_mGluR Ligand bind 94.2 0.058 1.3E-06 46.1 3.9 39 29-67 32-71 (452)
30 cd06373 PBP1_NPR_like Ligand b 93.9 0.17 3.7E-06 42.4 6.1 69 18-86 2-85 (396)
31 cd06371 PBP1_sensory_GC_DEF_li 93.8 0.081 1.8E-06 44.8 4.1 54 28-85 18-77 (382)
32 cd06352 PBP1_NPR_GC_like Ligan 93.1 0.21 4.5E-06 41.4 5.2 69 17-86 1-80 (389)
33 cd06385 PBP1_NPR_A Ligand-bind 92.7 0.27 5.9E-06 41.4 5.5 39 17-55 1-47 (405)
34 cd06348 PBP1_ABC_ligand_bindin 92.2 0.52 1.1E-05 38.3 6.4 68 17-85 1-78 (344)
35 PF13433 Peripla_BP_5: Peripla 91.2 0.38 8.1E-06 42.7 4.9 88 16-105 1-104 (363)
36 cd04509 PBP1_ABC_transporter_G 90.2 0.58 1.2E-05 35.6 4.6 69 17-85 1-78 (299)
37 cd06340 PBP1_ABC_ligand_bindin 89.5 1.2 2.6E-05 36.6 6.2 68 17-85 1-81 (347)
38 cd06364 PBP1_CaSR Ligand-bindi 89.3 1.4 3.1E-05 39.4 6.9 28 29-56 51-79 (510)
39 cd06347 PBP1_ABC_ligand_bindin 89.0 1.7 3.6E-05 34.6 6.5 68 17-85 1-78 (334)
40 cd06330 PBP1_Arsenic_SBP_like 87.0 2.7 5.8E-05 34.1 6.7 69 17-86 1-79 (346)
41 cd06331 PBP1_AmiC_like Type I 87.0 2.3 5E-05 34.5 6.3 69 17-86 1-79 (333)
42 cd06374 PBP1_mGluR_groupI Liga 86.9 1 2.2E-05 39.2 4.5 28 29-56 43-71 (472)
43 cd06363 PBP1_Taste_receptor Li 86.8 0.89 1.9E-05 38.6 4.0 58 29-86 44-119 (410)
44 cd06350 PBP1_GPCR_family_C_lik 86.3 2.6 5.6E-05 34.1 6.2 56 29-85 29-102 (348)
45 cd06361 PBP1_GPC6A_like Ligand 84.3 3.1 6.7E-05 35.9 6.1 31 27-57 35-65 (403)
46 cd06345 PBP1_ABC_ligand_bindin 82.4 4.6 9.9E-05 32.9 6.1 68 18-86 2-79 (344)
47 cd06342 PBP1_ABC_LIVBP_like Ty 81.9 6 0.00013 31.6 6.5 67 18-85 2-77 (334)
48 cd06346 PBP1_ABC_ligand_bindin 79.0 5.5 0.00012 32.2 5.5 69 17-86 1-79 (312)
49 cd06384 PBP1_NPR_B Ligand-bind 77.4 6.5 0.00014 33.2 5.7 59 28-86 19-85 (399)
50 cd06329 PBP1_SBP_like_3 Peripl 73.0 12 0.00026 30.6 6.0 58 27-85 17-77 (342)
51 cd06343 PBP1_ABC_ligand_bindin 71.0 20 0.00042 29.4 6.8 72 13-85 4-85 (362)
52 PRK15404 leucine ABC transport 68.4 28 0.00061 29.3 7.4 76 9-85 19-103 (369)
53 PF13458 Peripla_BP_6: Peripla 67.8 14 0.0003 29.5 5.2 68 15-84 1-79 (343)
54 cd06338 PBP1_ABC_ligand_bindin 64.5 12 0.00026 30.2 4.3 69 17-86 1-83 (345)
55 cd06335 PBP1_ABC_ligand_bindin 63.8 7.1 0.00015 32.1 2.9 59 27-85 17-78 (347)
56 cd06268 PBP1_ABC_transporter_L 63.7 37 0.0008 25.6 6.6 67 17-85 1-77 (298)
57 cd06344 PBP1_ABC_ligand_bindin 56.2 32 0.0007 27.9 5.5 56 28-85 17-77 (332)
58 TIGR03407 urea_ABC_UrtA urea A 56.0 51 0.0011 27.4 6.7 67 16-86 1-80 (359)
59 cd06326 PBP1_STKc_like Type I 52.2 71 0.0015 25.5 6.8 68 16-84 1-78 (336)
60 PF00031 Cystatin: Cystatin do 50.3 44 0.00095 22.5 4.6 22 24-45 8-29 (94)
61 cd06355 PBP1_FmdD_like Peripla 49.0 68 0.0015 26.5 6.4 66 17-86 1-79 (348)
62 cd06336 PBP1_ABC_ligand_bindin 44.5 76 0.0016 26.0 6.0 70 18-88 2-85 (347)
63 TIGR03669 urea_ABC_arch urea A 42.6 87 0.0019 26.7 6.2 68 16-85 1-79 (374)
64 cd06357 PBP1_AmiC Periplasmic 41.7 1.2E+02 0.0025 25.3 6.7 68 17-86 1-79 (360)
65 cd06358 PBP1_NHase Type I peri 37.7 1.3E+02 0.0027 24.4 6.2 67 17-85 1-78 (333)
66 cd06333 PBP1_ABC-type_HAAT_lik 35.6 1.6E+02 0.0035 23.3 6.5 66 17-85 1-77 (312)
67 cd06359 PBP1_Nba_like Type I p 34.3 1.2E+02 0.0027 24.5 5.6 65 17-85 1-76 (333)
68 KOG4440|consensus 34.0 88 0.0019 31.0 5.3 63 8-74 28-91 (993)
69 cd06349 PBP1_ABC_ligand_bindin 33.4 1.4E+02 0.003 24.2 5.8 58 27-86 17-79 (340)
70 cd06328 PBP1_SBP_like_2 Peripl 29.7 89 0.0019 25.5 4.1 68 18-85 2-79 (333)
71 cd00042 CY Substituted updates 26.3 1.7E+02 0.0036 20.1 4.5 22 24-45 8-29 (105)
72 COG0683 LivK ABC-type branched 24.7 1.6E+02 0.0035 24.8 4.9 75 14-90 9-94 (366)
73 cd06356 PBP1_Amide_Urea_BP_lik 23.8 3.2E+02 0.0069 22.3 6.4 67 17-85 1-78 (334)
74 COG3790 Predicted membrane pro 22.9 20 0.00044 26.7 -0.7 19 94-112 65-83 (97)
75 PF08702 Fib_alpha: Fibrinogen 21.9 28 0.00062 26.9 -0.1 10 102-111 10-19 (146)
76 cd06327 PBP1_SBP_like_1 Peripl 21.2 1.8E+02 0.004 23.4 4.5 54 28-85 19-77 (334)
77 KOG1056|consensus 20.5 1.9E+02 0.0041 29.0 5.0 58 9-67 25-99 (878)
No 1
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=99.61 E-value=4.2e-16 Score=133.38 Aligned_cols=80 Identities=20% Similarity=0.322 Sum_probs=68.9
Q ss_pred eEeEEecCCChHHHHHHHHHHHHhhhccc-Ccc-eeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCC-------
Q psy2803 17 GLGAIFEQGTDEVQSAFKFAMLTHNQNTT-TRR-FELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHS------- 84 (141)
Q Consensus 17 ~IGaIFd~~d~~~ElAFk~AI~~IN~~k~-l~~-f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~------- 84 (141)
.|||||+++++++|.||++||+++|++++ .++ ++|+|+|++++++|||++++++|+|+ ++|||||+++
T Consensus 1 ~iG~iF~~~~~~~~~aF~~Av~~~N~~~~~~~~~~~l~~~i~~~~~~dsf~~~~~~C~l~~~GV~AIfGp~~~~s~~~v~ 80 (372)
T cd06387 1 SIGGLFMRNTVQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQMSMNTLT 80 (372)
T ss_pred CcceeecCCcHHHHHHHHHHHHHhcccccccccCeEEEEeeEEecCCChHHHHHHHHHHhhcccEEEEecCCHhHHHHHH
Confidence 38999999999999999999999999874 333 79999999999999999999999999 7888888654
Q ss_pred ----CCCcchhhhhcC
Q psy2803 85 ----SPNLINFMTRLG 96 (141)
Q Consensus 85 ----~~~~~~~~~~~~ 96 (141)
..++||...+..
T Consensus 81 s~c~~~~iP~i~~~~~ 96 (372)
T cd06387 81 SFCGALHTSFITPSFP 96 (372)
T ss_pred HhhccccCCeeeeCCC
Confidence 557888766543
No 2
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=99.59 E-value=1.1e-15 Score=128.79 Aligned_cols=75 Identities=17% Similarity=0.349 Sum_probs=66.4
Q ss_pred eEeEEecCCChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCC--------
Q psy2803 17 GLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSS-------- 85 (141)
Q Consensus 17 ~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~-------- 85 (141)
+|||||+++++++|.||++||+++|++ +++|+|++++++++|||++++++|+|| +.|+|||+.|+
T Consensus 1 ~ig~if~~~~~~~~~af~~a~~~~n~~----~~~l~~~~~~~~~~dsf~~~~~~C~~~~~GV~AI~Gp~ss~~~~~v~~i 76 (370)
T cd06389 1 QIGGLFPRGADQEYSAFRVGMVQFSTS----EFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSF 76 (370)
T ss_pred CCceeecCCchHHHHHHHHHHHHhccc----CceeeeeeEEecccchHHHHHHHHHHhhcCcEEEEecCCHHHHHHHHHh
Confidence 589999999899999999999999986 379999999999999999999999999 88999988764
Q ss_pred ---CCcchhhhhc
Q psy2803 86 ---PNLINFMTRL 95 (141)
Q Consensus 86 ---~~~~~~~~~~ 95 (141)
.++|++..+.
T Consensus 77 ~~~~~IP~I~~~~ 89 (370)
T cd06389 77 CGTLHVSFITPSF 89 (370)
T ss_pred hccCCCCeeeecC
Confidence 4677776543
No 3
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=99.57 E-value=1.8e-15 Score=128.13 Aligned_cols=79 Identities=22% Similarity=0.360 Sum_probs=69.3
Q ss_pred eEeEEecCCChHHHHHHHHHHHHhhhccc-C-cceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCC------
Q psy2803 17 GLGAIFEQGTDEVQSAFKFAMLTHNQNTT-T-RRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSS------ 85 (141)
Q Consensus 17 ~IGaIFd~~d~~~ElAFk~AI~~IN~~k~-l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~------ 85 (141)
+|||||++++++++.||++||+++|++++ . .+++|++++++++++|||++++++|+|| +.|+|||+.|.
T Consensus 1 ~iG~if~~~~~~~~~af~~a~~~~n~~~~~~~~~~~l~~~~~~~~~~dsf~~~~~~C~~~~~gV~AI~Gp~ss~~~~~v~ 80 (371)
T cd06388 1 QIGGLFIRNTDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKRSVHTLT 80 (371)
T ss_pred CCceeecCCchHHHHHHHHHHHHhhccccccccceEEeeeeeecCCCChhHHHHHHHHHHhCCceEEEecCCHHHHHHHH
Confidence 59999999889999999999999998863 2 3389999999999999999999999999 89999998774
Q ss_pred -----CCcchhhhhc
Q psy2803 86 -----PNLINFMTRL 95 (141)
Q Consensus 86 -----~~~~~~~~~~ 95 (141)
-++||+..+.
T Consensus 81 ~i~~~~~IP~I~~~~ 95 (371)
T cd06388 81 SFCSALHISLITPSF 95 (371)
T ss_pred HHhhCCCCCeeecCc
Confidence 4688887654
No 4
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=99.56 E-value=2e-15 Score=127.93 Aligned_cols=73 Identities=15% Similarity=0.317 Sum_probs=64.3
Q ss_pred eEeEEecCCChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCC---------
Q psy2803 17 GLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHS--------- 84 (141)
Q Consensus 17 ~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~--------- 84 (141)
+|||||+++++++|.||++||+++|+++ +|+|++++++++|||++++++|+|+ ++|||||+++
T Consensus 1 ~iG~if~~~~~~~~~af~~av~~~N~~~-----~l~~~~~~~~~~dsf~~~~~~C~~~~~gV~AI~Gp~s~~~a~~v~si 75 (364)
T cd06390 1 QIGGLFPNQQSQEHAAFRFALSQLTEPP-----KLLPQIDIVNISDSFEMTYTFCSQFSKGVYAIFGFYDRKTVNMLTSF 75 (364)
T ss_pred CCceeeCCCChHHHHHHHHHHHHhccCc-----ccccceEEeccccHHHHHHHHHHHhhcCceEEEccCChhHHHHHHHh
Confidence 5999999999999999999999999875 8899999999999999999999999 7888888654
Q ss_pred --CCCcchhhhh
Q psy2803 85 --SPNLINFMTR 94 (141)
Q Consensus 85 --~~~~~~~~~~ 94 (141)
..++||+..+
T Consensus 76 c~~~~vP~i~~~ 87 (364)
T cd06390 76 CGALHVCFITPS 87 (364)
T ss_pred hcCCCCCceecC
Confidence 4567777543
No 5
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=99.51 E-value=1.9e-14 Score=125.38 Aligned_cols=90 Identities=14% Similarity=0.156 Sum_probs=74.2
Q ss_pred cchhhhhhcccceeeEeEEecCCChHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH----HHH
Q psy2803 3 PQKEMLISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM----LVT 77 (141)
Q Consensus 3 ~~~~~~~~~~p~~I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a 77 (141)
||.-..-.-.+..|+|||||+++ +++|.||++||+++|+++.+ .+++|++++++++++|||++++++|+++ |+|
T Consensus 6 ~~~~~~~~~~~~~i~iG~if~~~-~~~~~af~~Av~~~N~~~~l~~~~~L~~~~~~~~~~dsf~~~~~vC~~ll~~GV~A 84 (382)
T cd06377 6 PQPCQVLARIGHTVRLGALLVRA-PAPRDRVLAALARANRAPLLPYNLSLEVVAAAAPSRDPASLLRSVCQTVVVQGVSA 84 (382)
T ss_pred CCCCchhhhcCCceeeeEEecCC-chHHHHHHHHHHHhccccccccCceeEEeEEEcCCCChHHHHHHHHHhHhhCCeEE
Confidence 44444444556779999999988 78899999999999998764 4599999999999999999999999995 689
Q ss_pred hccc-CC-----------CCCCcchhhh
Q psy2803 78 NLMS-LH-----------SSPNLINFMT 93 (141)
Q Consensus 78 ~~~~-~~-----------~~~~~~~~~~ 93 (141)
+||+ +. +.-++||+..
T Consensus 85 Ifg~p~s~~~~~~v~sic~~l~IP~I~~ 112 (382)
T cd06377 85 LLAFPQTRPELVQLDFVSAALEIPVVSI 112 (382)
T ss_pred EEecCCCHHHHHHHHHHhcCCCCCEEEe
Confidence 9995 43 4456777776
No 6
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=99.44 E-value=9.2e-14 Score=120.79 Aligned_cols=76 Identities=16% Similarity=0.278 Sum_probs=67.5
Q ss_pred EeEEecCCChHHHHHHHHHHHHhhhccc-CcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCC----------
Q psy2803 18 LGAIFEQGTDEVQSAFKFAMLTHNQNTT-TRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLH---------- 83 (141)
Q Consensus 18 IGaIFd~~d~~~ElAFk~AI~~IN~~k~-l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~---------- 83 (141)
|||||+++++++|.||++||+.+|++++ +++++|++++++++..|||.+++++|+|| +.|||||..
T Consensus 2 iG~if~~~~~~~~~af~~Av~~~N~~~~~l~~~~L~~~~~~~~~~d~F~~~~~ac~l~~~gV~AI~Gp~s~~~a~~v~si 81 (400)
T cd06392 2 IGAIFEENAAKDDRVFQLAVSDLSLNDDILQSEKITYSIKSIEANNPFQAVQEACDLMTQGILALVTSTGCASANALQSL 81 (400)
T ss_pred eeeccCCCchHHHHHHHHHHHHhccCccccCCceEEEEEEecCCCChhHHHHHHHHHHhcCeEEEECCCchhHHHHHHHH
Confidence 8999999999999999999999998875 46699999999999999999999999999 788888754
Q ss_pred -CCCCcchhhh
Q psy2803 84 -SSPNLINFMT 93 (141)
Q Consensus 84 -~~~~~~~~~~ 93 (141)
...++||+..
T Consensus 82 c~~l~VP~is~ 92 (400)
T cd06392 82 TDAMHIPHLFV 92 (400)
T ss_pred hccCcCCcEee
Confidence 4567888875
No 7
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a
Probab=99.27 E-value=4.1e-12 Score=109.41 Aligned_cols=76 Identities=18% Similarity=0.347 Sum_probs=67.1
Q ss_pred eEeEEecCCChHHHHHHHHHHHHhhhccc-CcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhccc-----------
Q psy2803 17 GLGAIFEQGTDEVQSAFKFAMLTHNQNTT-TRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMS----------- 81 (141)
Q Consensus 17 ~IGaIFd~~d~~~ElAFk~AI~~IN~~k~-l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~----------- 81 (141)
.|||||+.++...+.||++||+.+|+++. ++.++|.+.+.+++++|+|.+.+++|+|+ +.|+|||
T Consensus 1 ~IGaif~~~s~~~~~Af~~Ai~~iN~~~~~l~~~~l~~~~~~~d~~d~f~a~~~~c~l~~~gv~ai~Gp~~~~~~~~v~~ 80 (400)
T cd06391 1 HIGAIFDESAKKDDEVFRMAVADLNQNNEILQTEKITVSVTFVDGNNPFQAVQEACELMNQGILALVSSIGCTSAGSLQS 80 (400)
T ss_pred CcceeeccCCchHHHHHHHHHHHhcCCccccCCCcceEEEEEeeCCCcHHHHHHHHHHHhCCeEEEECCCcchHHHHHHH
Confidence 48999999998999999999999998875 45689999999999999999999999999 6789998
Q ss_pred CCCCCCcchhh
Q psy2803 82 LHSSPNLINFM 92 (141)
Q Consensus 82 ~~~~~~~~~~~ 92 (141)
++...++||+.
T Consensus 81 ~~~~~~vP~i~ 91 (400)
T cd06391 81 LADAMHIPHLF 91 (400)
T ss_pred HhccCcCCeEE
Confidence 55556888884
No 8
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=99.20 E-value=1.6e-11 Score=101.60 Aligned_cols=70 Identities=30% Similarity=0.502 Sum_probs=62.6
Q ss_pred eEeEEecCCChHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCCC
Q psy2803 17 GLGAIFEQGTDEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSSP 86 (141)
Q Consensus 17 ~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~~ 86 (141)
+|||||+.++...+.||++||+++|..... +.++|.+.+.+++.+|+|++++++|+++ +.|++||++|..
T Consensus 1 ~iG~if~~~~~~~~~a~~~Av~~iN~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~c~ll~~~V~aiiGp~~s~~ 74 (382)
T cd06380 1 PIGGLFDVDEDQEYSAFRFAISQHNTNPNSTAPFKLLPHVDNLDTSDSFALTNAICSQLSRGVFAIFGSYDKSS 74 (382)
T ss_pred CceeEECCCChHHHHHHHHHHHHhcccccccCCeeeeeeeeEecccchHHHHHHHHHHHhcCcEEEEecCcHHH
Confidence 599999999889999999999999987543 5689999999999999999999999999 788999987653
No 9
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=98.97 E-value=9e-10 Score=93.31 Aligned_cols=69 Identities=12% Similarity=0.103 Sum_probs=61.9
Q ss_pred eEeEEecCCC---hHHHHHHHHHHHHhhhccc-CcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCC
Q psy2803 17 GLGAIFEQGT---DEVQSAFKFAMLTHNQNTT-TRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSS 85 (141)
Q Consensus 17 ~IGaIFd~~d---~~~ElAFk~AI~~IN~~k~-l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~ 85 (141)
+||+|||.++ ...+.||++||+++|.+.. ..+++|+..++..+.+++|++++++|+++ +.|||||+.|.
T Consensus 1 ~iG~i~d~~s~~G~~~~~a~~lAv~~iN~~~~~~~~~~l~~~~~d~~~d~~f~~~~~~~~~l~~gV~AIiGp~ss~ 76 (333)
T cd06394 1 RIAAILDDPMECGRGERLALALARERINRAPERLGKARVEVDIFELLRDSQYETTDTMCQILPKGVVSVLGPSSSP 76 (333)
T ss_pred CceeeecCCccccHHHHHHHHHHHHHhccCccccCCceeEEEEeeccccChHHHHHHHHHHHhcCeEEEECCCCch
Confidence 5999999988 8899999999999998754 34479999999999999999999999999 78999999884
No 10
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=98.95 E-value=8.2e-10 Score=93.81 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=61.3
Q ss_pred eEeEEecCCChHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCCC
Q psy2803 17 GLGAIFEQGTDEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSSP 86 (141)
Q Consensus 17 ~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~~ 86 (141)
+|||||+.++.+.+.||++|+...|.++.. ...++.+.+.+.+.+|+|++.+++|+|+ +.|+|||.++.+
T Consensus 1 ~IG~if~~~~~~~~~af~~ala~~~iN~~gg~~~~~i~~v~~dd~~d~~~a~~~~c~Li~~gV~AI~G~~~s~~ 74 (363)
T cd06381 1 HIGAIFSESALEDDEVFAVAVIDLNINEQILQTEKITLSISFIDLNNHFDAVQEACDLMNQGILALVTSTGCAS 74 (363)
T ss_pred CeeeeccCCcchHHHHHHHHHHHhhccccccCCccceeeeEeecCCChHHHHHHHHHHHhcCcEEEEecCChhH
Confidence 599999998888899999999999877643 3468899999999999999999999999 788998887754
No 11
>KOG1054|consensus
Probab=98.91 E-value=1.4e-09 Score=101.21 Aligned_cols=78 Identities=24% Similarity=0.395 Sum_probs=71.2
Q ss_pred hhcccceeeEeEEecCCChHHHHHHHHHHHHhhhcccC--cceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCC
Q psy2803 9 ISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTT--RRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLH 83 (141)
Q Consensus 9 ~~~~p~~I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l--~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~ 83 (141)
.+..|..|.||++|..+++++..|||+|+...|.+++. .+++|.|+++.++..+||.+..+.|+|+ ++|+||.++
T Consensus 20 ~G~f~~tiqigglF~~n~~qe~~Afr~~~~~~~~~~~~~~~pf~L~~~~d~~e~a~Sf~~tnafCsq~s~Gv~Aifg~yd 99 (897)
T KOG1054|consen 20 HGAFPNTIQIGGLFPRNTDQEHSAFRFAVQLYNTNQNTTEKPFKLNPHVDNLESANSFAVTNAFCSQFSRGVYAIFGFYD 99 (897)
T ss_pred cccCCCceeeccccCCcchHHHHHHHHHHHHhhcCCCCCCCCcccccccchhhhhhhHHHHHHHHHHHhhhHhhheeccc
Confidence 45688999999999999999999999999999987653 4599999999999999999999999999 899999999
Q ss_pred CCC
Q psy2803 84 SSP 86 (141)
Q Consensus 84 ~~~ 86 (141)
..+
T Consensus 100 ~ks 102 (897)
T KOG1054|consen 100 KKS 102 (897)
T ss_pred ccc
Confidence 875
No 12
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=98.80 E-value=5.5e-09 Score=87.60 Aligned_cols=72 Identities=24% Similarity=0.284 Sum_probs=61.7
Q ss_pred eeeEeEEecCCC-------hHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCC
Q psy2803 15 HIGLGAIFEQGT-------DEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLH 83 (141)
Q Consensus 15 ~I~IGaIFd~~d-------~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~ 83 (141)
.|+||+||+..+ ...+.||++||++||++... +..+|.++++.++..|+|.+.+++|+++ +.|++||++
T Consensus 2 ~i~IG~i~~~~tg~~~~~g~~~~~a~~~Av~~IN~~~~il~~~~l~~~~~~~~~~d~~~~~~~~~~~l~~~V~AiiGp~~ 81 (384)
T cd06393 2 VIRIGGIFEYLDGPNNQVMSAEELAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDSFEATKKACDQLALGVVAIFGPSQ 81 (384)
T ss_pred eeeEEEeecCCcccccccCcHHHHHHHHHHHHhcCCCccCCCceEEEEEEecccccchhHHHHhhcccccCcEEEECCCC
Confidence 589999998422 34789999999999988764 5589999999999999999999999987 788999988
Q ss_pred CCC
Q psy2803 84 SSP 86 (141)
Q Consensus 84 ~~~ 86 (141)
|++
T Consensus 82 S~~ 84 (384)
T cd06393 82 GSC 84 (384)
T ss_pred hHH
Confidence 754
No 13
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=98.68 E-value=3.8e-08 Score=77.73 Aligned_cols=80 Identities=23% Similarity=0.264 Sum_probs=66.1
Q ss_pred eEeEEecCCChHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccCCC-------
Q psy2803 17 GLGAIFEQGTDEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSLHS------- 84 (141)
Q Consensus 17 ~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~~~------- 84 (141)
+||+||+.++...+.||++|++.+|.+... +.+++...+..++.+|++.+.+++|+++ +.|++||..+
T Consensus 1 ~iG~i~~~~~~~~~~a~~~Ai~~iN~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~c~l~~~~~v~ai~G~~~s~~~~~v~ 80 (328)
T cd06351 1 NIGAIFDRDARKEELAFRAAIDALNTENLNALPTKLSVEVVEVNTNDPFSLLRAVCDLLVSQGVAAIFGPTSSESASAVQ 80 (328)
T ss_pred CeeeecCCCcHHHHHHHHHHHHHhccCccccCCeeEEEEEEEeCCCChHHHHHHHHHHHhccCcEEEECCCCHHHHHHHH
Confidence 499999998888899999999999988653 4578999999999999999999999998 5778888776
Q ss_pred ----CCCcchhhhhcC
Q psy2803 85 ----SPNLINFMTRLG 96 (141)
Q Consensus 85 ----~~~~~~~~~~~~ 96 (141)
..++|++-..-+
T Consensus 81 ~~~~~~~iP~is~~~~ 96 (328)
T cd06351 81 SICDALEIPHISISGG 96 (328)
T ss_pred HHhccCCCCeEEeecC
Confidence 445666655433
No 14
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.
Probab=98.64 E-value=3.8e-08 Score=83.86 Aligned_cols=65 Identities=14% Similarity=-0.010 Sum_probs=51.2
Q ss_pred EecCCChHHHHHHHHHHHHhhhccc---CcceeEEEEEEeeCCCChhHHHHHHHHHH---H--HHhcccCCCC
Q psy2803 21 IFEQGTDEVQSAFKFAMLTHNQNTT---TRRFELQAYVDVINTADAFKLSRLSIRKM---L--VTNLMSLHSS 85 (141)
Q Consensus 21 IFd~~d~~~ElAFk~AI~~IN~~k~---l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~--~a~~~~~~~~ 85 (141)
+-+++.++++.||++||+++|+++. ...+.+++++.+++.+|||.+++++|+|| + +|+|||..+.
T Consensus 6 ~~~~~~~~~~~A~~~Av~~~N~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~C~~~~~gv~~~AIiGp~ss~ 78 (368)
T cd06383 6 MTEDDNDVYKQIIDDALSYINRNIGTGLSVVHQQVETNAEVNRNDVKVALIEVCDKADSAIVPHLVLDTTTCG 78 (368)
T ss_pred ecccchHHHHHHHHHHHHHHhcCCCCceEEEEecccccccccCCcHHHHHHHHHHHHHccCCcEEEECCCcch
Confidence 4445567889999999999998852 12256666667779999999999999999 4 6999997543
No 15
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=98.44 E-value=4.6e-07 Score=75.36 Aligned_cols=69 Identities=13% Similarity=0.219 Sum_probs=54.1
Q ss_pred hhcccceeeEeEEecCCChHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcc
Q psy2803 9 ISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLM 80 (141)
Q Consensus 9 ~~~~p~~I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~ 80 (141)
+.+.+..|+||+||+ ....+.||++||+++|++... ..++|.+....++ .|+++++..+|++| +.|+++
T Consensus 13 ~~~~~~~i~IG~i~~--~~~~~~~~~~Ai~~~N~~~~~~~~~~l~~~~i~~~-~~~~~~a~~~~~~Li~~~V~aii~ 86 (377)
T cd06379 13 AGCSPKTVNIGAVLS--NKKHEQEFKEAVNAANVERHGSRKIKLNATTITHD-PNPIQTALSVCEQLISNQVYAVIV 86 (377)
T ss_pred cCCCCcEEEEeEEec--chhHHHHHHHHHHHHhhhhcCCcceeeccceEeec-CChhhHHHHHHHHHhhcceEEEEE
Confidence 355678899999996 346789999999999997643 3467777766664 69999999999887 577763
No 16
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=98.43 E-value=4.6e-07 Score=73.30 Aligned_cols=70 Identities=17% Similarity=0.283 Sum_probs=59.1
Q ss_pred eEeEEec-CCChHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCCC
Q psy2803 17 GLGAIFE-QGTDEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSSP 86 (141)
Q Consensus 17 ~IGaIFd-~~d~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~~ 86 (141)
+||+||+ ......+.|+++||++||+.... +..+|...+.....+|++.+.+++|+++ +.|++|+.+|+.
T Consensus 1 ~iG~i~~~~~g~~~~~a~~lAv~~iN~~ggil~g~~l~~~~~d~~~~~~~~a~~~~~~li~~~V~aiiG~~~S~~ 75 (327)
T cd06382 1 RIGAIFDDDDDSGEELAFRYAIDRINREKELLANTTLEYDIKRVKPDDSFETTKKVCDLLQQGVAAIFGPSSSEA 75 (327)
T ss_pred CeEEEecCCCchHHHHHHHHHHHHhcccccccCCceEEEEEEEecCCCcHHHHHHhhhhhhcCcEEEECCCChhH
Confidence 5999999 66678899999999999987653 3467888887777789999999999998 788999988764
No 17
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=98.36 E-value=9.5e-07 Score=70.85 Aligned_cols=71 Identities=28% Similarity=0.438 Sum_probs=58.6
Q ss_pred eEeEEecCCChHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCCCC
Q psy2803 17 GLGAIFEQGTDEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSSPN 87 (141)
Q Consensus 17 ~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~~~ 87 (141)
+|||||+.+....+.|+++||++||..... ++.+|...+...+.+|++.+.+++|+++ +.|++|+..|...
T Consensus 1 ~iG~i~~~~~~~~~~a~~lAv~~iN~~ggil~~~~l~~~~~d~~~~~~~~a~~~a~~li~~~V~aiiG~~~S~~~ 75 (324)
T cd06368 1 RIGAIFDEDARQEELAFRFAIDRINTNEEILAKFTLVPDIDELNTNDSFELTNKACDLLSQGVAAIFGPSSSSSA 75 (324)
T ss_pred CEEEEeCCCChHHHHHHHHHHHHhcccccccCCceeeeEEEEecCCChHHHHHHHHHHHhcCcEEEECCCCHHHH
Confidence 599999988777889999999999987543 4467777777666789999999999998 6889998877543
No 18
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=98.14 E-value=3.2e-06 Score=69.68 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=57.3
Q ss_pred eeeEeEEecCCChHHHHHHHHHHHHhhhcccCcceeEEEEEEee-CCCChhHHHHHHHHHH----HHHhcccCCCCC
Q psy2803 15 HIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVI-NTADAFKLSRLSIRKM----LVTNLMSLHSSP 86 (141)
Q Consensus 15 ~I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V-~~~DSFeaSkkaC~ql----~~a~~~~~~~~~ 86 (141)
.++||+||+... .+.+|+.||..+|.+.+ ..+++...+... +.+|++++.+.+|+++ +.+++|+..|+.
T Consensus 2 ~~~ig~~~~~~~--~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~d~~~d~~~~~~~~~~~l~~~~v~~iig~~~s~~ 75 (362)
T cd06367 2 TVNIGVVLSGSS--SEPAFRDAVTAANFRHN-LPYNLSLEAVAVSNDTDPISLLLSVCDLLVVQVVAGVVFSDPTDE 75 (362)
T ss_pred ceEEEEEecCCc--chhhHHHHhhhcccccc-CCcccceEEEEEecCCCHHHHHHHHHHHhcccceEEEEecCCCCc
Confidence 578999999764 46999999999999876 335777777777 8889999999999999 577888877764
No 19
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=96.55 E-value=0.0055 Score=51.89 Aligned_cols=69 Identities=16% Similarity=0.059 Sum_probs=52.2
Q ss_pred eeEeEEecC-C------ChHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCC
Q psy2803 16 IGLGAIFEQ-G------TDEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHS 84 (141)
Q Consensus 16 I~IGaIFd~-~------d~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~ 84 (141)
|+||.+.+- + ......|+++||++||+.... +..++...+..-. .|++.+.+++|+++ +.|++||.+|
T Consensus 1 i~iG~~~pltG~~~a~~G~~~~~a~~lAv~~IN~~ggil~g~~l~l~~~D~~-~~~~~a~~~~~~li~~~v~aiiGp~~S 79 (404)
T cd06370 1 IKVGYLAEWTTDRTDRLGLPISGALTLAVEDVNADPNLLPGYKLQFEWVDTH-GDEVLSIRAVSDWWKRGVVAFIGPECT 79 (404)
T ss_pred CeeEecccccCCccccccccHHHHHHHHHHHHhCCCCCCCCCEEEEEEEecC-CChHHHHHHHHHHHhcCceEEECCCch
Confidence 467776652 2 123468999999999987644 3467777766544 89999999999998 7899999987
Q ss_pred C
Q psy2803 85 S 85 (141)
Q Consensus 85 ~ 85 (141)
+
T Consensus 80 ~ 80 (404)
T cd06370 80 C 80 (404)
T ss_pred h
Confidence 4
No 20
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=96.38 E-value=0.0047 Score=47.12 Aligned_cols=68 Identities=19% Similarity=0.079 Sum_probs=50.8
Q ss_pred eEeEEecCCC--------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeC--CCChhHHHHHHHHH-----HHHHhccc
Q psy2803 17 GLGAIFEQGT--------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVIN--TADAFKLSRLSIRK-----MLVTNLMS 81 (141)
Q Consensus 17 ~IGaIFd~~d--------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~--~~DSFeaSkkaC~q-----l~~a~~~~ 81 (141)
.||++|+... .....++..|++.+|.. .+..+|...+.... +.+++...+.+|++ -+.|++||
T Consensus 1 ~iG~~f~~~~~~~~~~~~~~~~~~~~~~~~~~n~~--~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~aiiG~ 78 (298)
T cd06269 1 RIGGLFPLHSGGRFGEEGAFRAAAALFAVEEINND--LPNTTLGYEIYDSCCSPSDAFSAALDLCSLLEKSRGVVAVIGP 78 (298)
T ss_pred CEEEEeecccccccCHHHHHHHHHHHHHHHHHhcc--CCCCeeeeEEEecCCChHHHHHHHHHHHhcCCCCCceEEEECC
Confidence 4899998643 12345677888888765 45568888887776 67899999999998 37889998
Q ss_pred CCCCC
Q psy2803 82 LHSSP 86 (141)
Q Consensus 82 ~~~~~ 86 (141)
.++..
T Consensus 79 ~~s~~ 83 (298)
T cd06269 79 SSSSS 83 (298)
T ss_pred CCchH
Confidence 87653
No 21
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=96.36 E-value=0.0092 Score=48.66 Aligned_cols=69 Identities=19% Similarity=0.248 Sum_probs=51.2
Q ss_pred eEeEEecCC----ChHHHHHHHHHHHHhhhccc-CcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccCCCCC
Q psy2803 17 GLGAIFEQG----TDEVQSAFKFAMLTHNQNTT-TRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSLHSSP 86 (141)
Q Consensus 17 ~IGaIFd~~----d~~~ElAFk~AI~~IN~~k~-l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~~~~~ 86 (141)
+||+|++.. ....+.+++.|++.+|.... .+..++...+.. +..|...+.+.+|+++ +.+++||.+|..
T Consensus 1 ~IG~~~p~sGa~~G~~~~~~~~lAv~~iN~~gg~~~g~~i~~~~~D-~~~~~~~a~~~a~~l~~~~~v~~viG~~~s~~ 78 (350)
T cd06366 1 RIGAIFDLSGSWIGKAALPAIEMALEDVNADNSILPGYRLVLHVRD-SKCDPVQAASAALDLLENKPVVAIIGPQCSSV 78 (350)
T ss_pred CEEEEEecCCCcccHHHHHHHHHHHHHHhcCCCcCCCcEEEEEecC-CCCCHHHHHHHHHHHhccCCceEEECCCcHHH
Confidence 488888754 24568899999999998752 334566665444 3468899999999998 678888877643
No 22
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=96.24 E-value=0.0054 Score=53.64 Aligned_cols=59 Identities=15% Similarity=0.095 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHH----------------HHH--------HH---HHHhc
Q psy2803 28 EVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRL----------------SIR--------KM---LVTNL 79 (141)
Q Consensus 28 ~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkk----------------aC~--------ql---~~a~~ 79 (141)
+...|+.+||++||++..+ ++.+|.+++.....++++.+..+ .|. +. +.|++
T Consensus 31 ~~~~Am~~AIe~IN~~~~lLp~~~Lg~~i~Dtc~~~~~a~~~~~~~i~~~~~~~~~~~~~C~~~~~~~~~~~~~~V~aVI 110 (458)
T cd06375 31 QRLEAMLFAIDRINNDPRILPGIKLGVHILDTCSRDTYALEQSLEFVRASLTKVDTSEYECPDGSYAVQENSPLAIAGVI 110 (458)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCceeccEEEecCCCcHHHHHHHHHHHhhhhhcccccccccccCCccccccCCCCeEEEE
Confidence 4577999999999999864 66999999998877787766332 565 22 67788
Q ss_pred ccCCCCC
Q psy2803 80 MSLHSSP 86 (141)
Q Consensus 80 ~~~~~~~ 86 (141)
|+..|+.
T Consensus 111 G~~~S~~ 117 (458)
T cd06375 111 GGSYSSV 117 (458)
T ss_pred cCCCchH
Confidence 8877754
No 23
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=96.24 E-value=0.0032 Score=54.45 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHH---------------HHHH-------H---HHHhcccC
Q psy2803 29 VQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRL---------------SIRK-------M---LVTNLMSL 82 (141)
Q Consensus 29 ~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkk---------------aC~q-------l---~~a~~~~~ 82 (141)
...|+++||++||++... +..+|.+++.....+++|.+.++ .|++ . +.|++|++
T Consensus 32 ~~~a~~~Aie~IN~~~~iLpg~~L~~~i~D~~~~~~~~~~~a~~~~~~l~~~~~~~~~C~~~~~~~~~~~~~V~aviG~~ 111 (463)
T cd06376 32 RLEAMLYALDQINSDPDLLPNVTLGARILDTCSRDTYALEQSLTFVQALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGAS 111 (463)
T ss_pred HHHHHHHHHHHhhCCCCCCCCceEccEEEeccCCcHHHHHHHHHHHhhhhhcccccCcCCCCCccccCCCCCeEEEECCC
Confidence 467999999999998764 45899999988777777776644 3663 1 57888888
Q ss_pred CCCC
Q psy2803 83 HSSP 86 (141)
Q Consensus 83 ~~~~ 86 (141)
.|+.
T Consensus 112 ~S~~ 115 (463)
T cd06376 112 ASSV 115 (463)
T ss_pred CchH
Confidence 7754
No 24
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=96.14 E-value=0.009 Score=47.34 Aligned_cols=57 Identities=23% Similarity=0.151 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhhhccc-CcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCC
Q psy2803 29 VQSAFKFAMLTHNQNTT-TRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSS 85 (141)
Q Consensus 29 ~ElAFk~AI~~IN~~k~-l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~ 85 (141)
...|+++|++++|++.. .+.++|...+.....++++......|.+. +.|++||.+++
T Consensus 2 ~~~a~~~Ai~~iN~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~v~aviGp~~~~ 62 (348)
T PF01094_consen 2 VLAAVQLAIDEINNNPDLLPNITLEVQVFDTCSDDSFALQAAICSLNKQGVVAVIGPSCSS 62 (348)
T ss_dssp HHHHHHHHHHHHHHSSTSSTTSEEEEEEEEETTTTHHHHHHHHHHHHHHTECEEEETSSHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEEEEEeeccCCcccccchhhhccCCCcEEEECCCccc
Confidence 46799999999999876 45589999888777789999999999987 57899999877
No 25
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=96.04 E-value=0.0027 Score=55.54 Aligned_cols=61 Identities=18% Similarity=0.075 Sum_probs=46.6
Q ss_pred ChHHHHHHHHHHHHhhhccc-CcceeEEEEEEeeCCCChhHHH--------------HHHHHHH--HHHhcccCCCCC
Q psy2803 26 TDEVQSAFKFAMLTHNQNTT-TRRFELQAYVDVINTADAFKLS--------------RLSIRKM--LVTNLMSLHSSP 86 (141)
Q Consensus 26 d~~~ElAFk~AI~~IN~~k~-l~~f~L~p~I~~V~~~DSFeaS--------------kkaC~ql--~~a~~~~~~~~~ 86 (141)
..+...|+.+||++||+++. +++++|.+++.....++++.+. +..|+.. +.|++|+..|+.
T Consensus 38 ~~~~~~Am~~Ai~~IN~~~~lLp~~~Lg~~i~dtc~~~~~a~~~~~~~~~~~~~~~~~~~C~~~~~vvavIG~~~S~~ 115 (469)
T cd06365 38 NYQHVLALLFAIEEINKNPHLLPNISLGFHIYNVLHSDRKALESSLMWLSGEGETIPNYSCRRQRKSVAVIGGPSWAL 115 (469)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCCCceEEEEEECCCCccHHHHHHHHHHHhCCCcccCCccCCCCCceEEEEcCCccHH
Confidence 34567799999999999886 4669999999988888888875 4556544 566777776653
No 26
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=95.64 E-value=0.031 Score=46.72 Aligned_cols=57 Identities=12% Similarity=0.094 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCC-CChhHHHHHHHHHH----HHHhcccCCCCC
Q psy2803 28 EVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINT-ADAFKLSRLSIRKM----LVTNLMSLHSSP 86 (141)
Q Consensus 28 ~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~-~DSFeaSkkaC~ql----~~a~~~~~~~~~ 86 (141)
....|+++|+++||+.... +..+|... ..+. .|+..+.+.+|+++ +.|++||.+|+.
T Consensus 18 ~~~~a~~lAi~~IN~~~~~l~~~~l~~~--~~D~~~~~~~a~~~~~~l~~~~~v~aiiGp~~S~~ 80 (391)
T cd06372 18 RLGAALQIAMDKVNSDPVYLGNYSMEFT--YTNSTCSAKESLAGFIDQVQKEHISALFGPACPEA 80 (391)
T ss_pred hHHHHHHHHHHHHhcCCCCCCCceEEEE--EecCCCCccHHHHHHHHHHHhcCceEEECCCCCcH
Confidence 3457999999999998653 44677654 3343 58899999999998 678999999865
No 27
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=95.61 E-value=0.015 Score=49.26 Aligned_cols=60 Identities=15% Similarity=0.105 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCC--hhHHHHHHHHHHHHHhcccCCCCC
Q psy2803 27 DEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTAD--AFKLSRLSIRKMLVTNLMSLHSSP 86 (141)
Q Consensus 27 ~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~D--SFeaSkkaC~ql~~a~~~~~~~~~ 86 (141)
...+.|+++|+++||++... +..+|...+..-.-++ ++.+.+++|+.-+.|++||.+|..
T Consensus 17 ~~~~~a~~lAie~IN~~~~ll~g~~l~~~~~d~~~~~~~~~~~~~~l~~~~v~aiiGp~~s~~ 79 (387)
T cd06386 17 ARVAPAIEYAQRRLEANRLLFPGFRFNVHYEDSDCGNEALFSLVDRSCARKPDLILGPVCEYA 79 (387)
T ss_pred hhhHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCcCCchHHHHHHHHHHhhCCCEEECCCCccH
Confidence 45678999999999987653 5578888777665544 788889999866789999998875
No 28
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=94.88 E-value=0.016 Score=49.52 Aligned_cols=67 Identities=3% Similarity=0.035 Sum_probs=45.0
Q ss_pred eeEeEEecCCChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HH-HhcccCCCC
Q psy2803 16 IGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LV-TNLMSLHSS 85 (141)
Q Consensus 16 I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~-a~~~~~~~~ 85 (141)
+.|+.|+.... -.+.+.+-+-..-+-. .+..++.+++.+|+.+|+|++.+++|++| |. ++|||..+.
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~vC~ll~~~~V~aiIfgp~~~~ 74 (362)
T cd06378 3 LNIAVVLSGTN-SSTAFLRGRLTKEDFL--DLPLDVNVVTLLVNETDPKSILTQLCDLLSTTKVHGVVFEDDTDQ 74 (362)
T ss_pred ceEEEEecCCC-cchhhhcccccccccc--CCCCCccceeeecCCCCHHHHHHHHHHHhcccceEEEEecCCCCc
Confidence 56888886542 1222333222111111 14478899999999999999999999999 44 477998876
No 29
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=94.18 E-value=0.058 Score=46.09 Aligned_cols=39 Identities=23% Similarity=0.203 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHH
Q psy2803 29 VQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLS 67 (141)
Q Consensus 29 ~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaS 67 (141)
...|+++||++||+.... +..+|...+..-..+++..+.
T Consensus 32 ~~~a~~~Aie~IN~~~~iLpg~~L~~~i~D~~~~~~~a~~ 71 (452)
T cd06362 32 RLEAMLFALDEINNDPTLLPGITLGAHILDTCSRDTYALE 71 (452)
T ss_pred HHHHHHHHHHHhhCCCCCCCCCeeCcEEEEeCCCchHHHH
Confidence 478999999999998754 457888888765545555443
No 30
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=93.87 E-value=0.17 Score=42.36 Aligned_cols=69 Identities=9% Similarity=-0.042 Sum_probs=46.7
Q ss_pred EeEEecCCC-------hHHHHHHHHHHHHhhhccc-CcceeEEEEEEeeCC----CChhHHHHHHHHHH---HHHhcccC
Q psy2803 18 LGAIFEQGT-------DEVQSAFKFAMLTHNQNTT-TRRFELQAYVDVINT----ADAFKLSRLSIRKM---LVTNLMSL 82 (141)
Q Consensus 18 IGaIFd~~d-------~~~ElAFk~AI~~IN~~k~-l~~f~L~p~I~~V~~----~DSFeaSkkaC~ql---~~a~~~~~ 82 (141)
||.++.... .....|++.|+++||.... ++..++...+..-.. +++..+....|.+. +.|++||.
T Consensus 2 ~g~l~p~~~~~~~~~~~~~~~a~~lAve~IN~~gg~l~G~~l~~~~~D~~~~~~~~~~~a~~~a~~~~~~~~v~aiiGp~ 81 (396)
T cd06373 2 LAVLLPKNNTSYPWSLPRVGPAIDIAVERVNADPGLLPGHNITLVFEDSECKCGCSESEAPLVAVDLYFQHKPDAFLGPG 81 (396)
T ss_pred eEEEcCCCCCCcccchhhhhhHHHHHHHHHhcCCCcCCCeEEEEEEecCccccccchhhhHHHHHHHHhccCCeEEECCC
Confidence 677775432 2456799999999998764 334566665554333 35666666666554 68899999
Q ss_pred CCCC
Q psy2803 83 HSSP 86 (141)
Q Consensus 83 ~~~~ 86 (141)
+|..
T Consensus 82 ~S~~ 85 (396)
T cd06373 82 CEYA 85 (396)
T ss_pred ccch
Confidence 8866
No 31
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=93.83 E-value=0.081 Score=44.80 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH-----HHHhcccCCCC
Q psy2803 28 EVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM-----LVTNLMSLHSS 85 (141)
Q Consensus 28 ~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql-----~~a~~~~~~~~ 85 (141)
..+.|+++||+++|+.... +..+ ++.+..+|++...+++|.++ +.|++||++|.
T Consensus 18 ~~~~a~~lAie~iN~~g~il~g~~----l~~~~~d~~~~~~~a~~~~~~~~~~V~aviGp~~S~ 77 (382)
T cd06371 18 LPDVAARLAVSRINRDPSLSLGYW----FDYVLLPEPCETSRALAAFLGYEGYASAFVGPVNPG 77 (382)
T ss_pred hHHHHHHHHHHHHhCCCCCCCCce----EEEEEecCCCChhHHHHHHHcccCCceEEECCCCch
Confidence 3577999999999987543 2333 33444477788889999988 58899999863
No 32
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=93.06 E-value=0.21 Score=41.36 Aligned_cols=69 Identities=9% Similarity=0.013 Sum_probs=45.0
Q ss_pred eEeEEecCCC------hHHHHHHHHHHHHhhhccc-CcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccCCCC
Q psy2803 17 GLGAIFEQGT------DEVQSAFKFAMLTHNQNTT-TRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSLHSS 85 (141)
Q Consensus 17 ~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~-l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~~~~ 85 (141)
+||.+++-.. .....|++.|++++|+... .+..+++..+..-.. |.-.+.+.+.+++ +.|++|+++|+
T Consensus 1 kvG~~~~~sG~~~~~g~~~~~a~~lAve~iN~~g~~i~g~~l~~~~~D~~~-~~~~a~~~a~~l~~~~~v~aiiG~~~s~ 79 (389)
T cd06352 1 TVGVLLPWNTDYPFSLARVGPAIQLAVERVNADPNLLPGYDFTFVYLDTEC-SESVALLAAVDLYWEHNVDAFIGPGCPY 79 (389)
T ss_pred CeEEEcCCCCCCCchhhcchHHHHHHHHHHhcCCCCCCCceEEEEEecCCC-chhhhHHHHHHHHhhcCCcEEECCCChh
Confidence 4777776422 3457899999999998753 344566666554333 4444555555555 68899998884
Q ss_pred C
Q psy2803 86 P 86 (141)
Q Consensus 86 ~ 86 (141)
.
T Consensus 80 ~ 80 (389)
T cd06352 80 A 80 (389)
T ss_pred H
Confidence 3
No 33
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=92.67 E-value=0.27 Score=41.40 Aligned_cols=39 Identities=23% Similarity=0.185 Sum_probs=27.8
Q ss_pred eEeEEecCC-C------hHHHHHHHHHHHHhhhcccCc-ceeEEEEE
Q psy2803 17 GLGAIFEQG-T------DEVQSAFKFAMLTHNQNTTTR-RFELQAYV 55 (141)
Q Consensus 17 ~IGaIFd~~-d------~~~ElAFk~AI~~IN~~k~l~-~f~L~p~I 55 (141)
+||+||+.. . .....|++.||++||+..... ..+|...+
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~~a~~lAve~IN~~~gil~g~~l~~~~ 47 (405)
T cd06385 1 TLAVILPLTNTSYPWAWPRVGPALERAIDRVNADPDLLPGLHLQYVL 47 (405)
T ss_pred CeeEECCCCCCcCccchhhhHHHHHHHHHHHhcCCCCCCCceEEEEE
Confidence 489999732 2 456779999999999876443 45666654
No 34
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=92.15 E-value=0.52 Score=38.34 Aligned_cols=68 Identities=13% Similarity=0.067 Sum_probs=48.3
Q ss_pred eEeEEecCC------ChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccCCCC
Q psy2803 17 GLGAIFEQG------TDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSLHSS 85 (141)
Q Consensus 17 ~IGaIFd~~------d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~~~~ 85 (141)
+||.+.+-. ....+.+++.|++++|..-.....+++..+.. +.+|.-.+.+.+|+++ +.+++|++.+.
T Consensus 1 ~IG~~~plsG~~a~~g~~~~~g~~~a~~~iNa~ggi~G~~v~lv~~D-~~~~p~~a~~~~~~li~~~~v~~iiG~~~s~ 78 (344)
T cd06348 1 PLGVALALTGNAALYGQEQLAGLKLAEDRFNQAGGVNGRPIKLVIED-SGGDEAEAINAFQTLINKDRVLAIIGPTLSQ 78 (344)
T ss_pred CeeEEEeccCchhhcCHhHHHHHHHHHHHHhhcCCcCCcEEEEEEec-CCCChHHHHHHHHHHhhhcCceEEECCCCcH
Confidence 367666532 24567899999999997543333355555554 5578899999999998 67888887654
No 35
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=91.24 E-value=0.38 Score=42.67 Aligned_cols=88 Identities=16% Similarity=0.100 Sum_probs=49.0
Q ss_pred eeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH-----HHHhcccCCC
Q psy2803 16 IGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM-----LVTNLMSLHS 84 (141)
Q Consensus 16 I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql-----~~a~~~~~~~ 84 (141)
|+||.||.... ..+..+-.+||++||..--....+|++.+. ++...-.+....|+.| +.++||-+-|
T Consensus 1 ikVGiL~S~tG~~a~~e~~~~~~~~lAI~eINa~GGvlG~~le~v~~--Dp~Sd~~~ya~~A~~Li~~d~V~~ifGc~TS 78 (363)
T PF13433_consen 1 IKVGILHSLTGTMAISERSLLDGALLAIEEINAAGGVLGRQLEPVIY--DPASDPSTYAEKAEKLIREDGVRAIFGCYTS 78 (363)
T ss_dssp --EEEE--SSSTTHHHHHHHHHHHHHHHHHHHCTTTBTTB--EEEEE----TT-HHHHHHHHHHHHHHS---EEEE--SH
T ss_pred CeEEEEEeCCCchHhhhHHHHHHHHHHHHHHHhcCCcCCeEEEEEEE--CCCCCHHHHHHHHHHHHHhCCccEEEecchh
Confidence 68999997532 334567899999999876544458888865 5666677777777777 5789999888
Q ss_pred CCC---cchhhhh--cCCCccccccc
Q psy2803 85 SPN---LINFMTR--LGFEPKFTESF 105 (141)
Q Consensus 85 ~~~---~~~~~~~--~~~~~~~~~~~ 105 (141)
+|- +|-+|.+ |=|-|+.-|-|
T Consensus 79 asRKaVlPvvE~~~~LL~Yp~~YEG~ 104 (363)
T PF13433_consen 79 ASRKAVLPVVERHNALLFYPTQYEGF 104 (363)
T ss_dssp HHHHHHHHHHHHCT-EEEE-S-----
T ss_pred hhHHHHHHHHHhcCceEEeccccccc
Confidence 774 4555543 44788888866
No 36
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=90.22 E-value=0.58 Score=35.56 Aligned_cols=69 Identities=13% Similarity=0.046 Sum_probs=44.5
Q ss_pred eEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeC--CCChhHHHHHHHHH-HHHHhcccCCCC
Q psy2803 17 GLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVIN--TADAFKLSRLSIRK-MLVTNLMSLHSS 85 (141)
Q Consensus 17 ~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~--~~DSFeaSkkaC~q-l~~a~~~~~~~~ 85 (141)
+||+|++... .....+++.|++++|........++...+.... +.+..+..+.+|+. -+.+++|+.++.
T Consensus 1 ~IG~i~p~~g~~~~~~~~~~~~~~~a~~~~n~~~g~~g~~~~~~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~~~ 78 (299)
T cd04509 1 KIGVLFPLSGPYAEYGAFRLAGAQLAVEEINAKGGIPGRKLELVIYDDQSDPARALAAARRLCQQEGVDALVGPVSSG 78 (299)
T ss_pred CeeEEEcCCCcchhcCHHHHHHHHHHHHHHHhcCCCCCcEEEEEEecCCCCHHHHHHHHHHHhcccCceEEEcCCCcH
Confidence 4899997542 346779999999999864333345665554432 23345555666666 366788887653
No 37
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=89.48 E-value=1.2 Score=36.63 Aligned_cols=68 Identities=10% Similarity=0.073 Sum_probs=46.0
Q ss_pred eEeEEecCCC------hHHHHHHHHHHHHhhhccc---CcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccCC
Q psy2803 17 GLGAIFEQGT------DEVQSAFKFAMLTHNQNTT---TRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSLH 83 (141)
Q Consensus 17 ~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~---l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~~ 83 (141)
+||.+.+..- .....+++.|++++|.... ....++...+.. +.+|...+.+.+|+++ +.+++|+.+
T Consensus 1 ~IG~~~p~sG~~a~~g~~~~~g~~lA~~~iN~~GGi~~i~G~~v~lv~~D-~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 79 (347)
T cd06340 1 KIGVLLPLSGGLAAIGQQCKAGAELAVEEINAAGGIKSLGGAKLELVFGD-SQGNPDIGATEAERLITEEGVVALVGAYQ 79 (347)
T ss_pred CceeEecCCchhhhhCHHHHHHHHHHHHHHHhcCCccCCCCceEEEEEec-CCCCHHHHHHHHHHHhccCCceEEecccc
Confidence 3666665421 4467899999999998641 223355554332 2357788888999988 678889887
Q ss_pred CC
Q psy2803 84 SS 85 (141)
Q Consensus 84 ~~ 85 (141)
+.
T Consensus 80 s~ 81 (347)
T cd06340 80 SA 81 (347)
T ss_pred hH
Confidence 65
No 38
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=89.28 E-value=1.4 Score=39.38 Aligned_cols=28 Identities=21% Similarity=0.113 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhhcccC-cceeEEEEEE
Q psy2803 29 VQSAFKFAMLTHNQNTTT-RRFELQAYVD 56 (141)
Q Consensus 29 ~ElAFk~AI~~IN~~k~l-~~f~L~p~I~ 56 (141)
...|+.+||++||++..+ ++.+|.+++.
T Consensus 51 ~~~am~~AieeIN~~~~lLp~i~Lg~~i~ 79 (510)
T cd06364 51 WLQAMIFAIEEINNSPTLLPNITLGYRIF 79 (510)
T ss_pred HHHHHHHHHHHHhCCCccCCCCEEeEEEE
Confidence 467999999999998764 5578888876
No 39
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=88.98 E-value=1.7 Score=34.64 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=45.3
Q ss_pred eEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccCCCC
Q psy2803 17 GLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSLHSS 85 (141)
Q Consensus 17 ~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~~~~ 85 (141)
+||.+++... .....+++.|++++|+.......+++..+ +=+.+|.-...+.+|+++ +.|++|+..+.
T Consensus 1 ~iG~~~~~sG~~~~~g~~~~~g~~~a~~~iN~~ggi~g~~l~~~~-~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~s~ 78 (334)
T cd06347 1 KIGVNLPLTGDVAAYGQSEKNGAKLAVKEINAAGGVLGKKIELVV-EDNKSDKEEAANAATRLIDQDKVVAIIGPVTSG 78 (334)
T ss_pred CeeEEecCCchhhhcCHhHHHHHHHHHHHHHhcCCCCCeeEEEEE-ecCCCChHHHHHHHHHHhcccCeEEEEcCCccH
Confidence 3677765422 34678999999999986433333555433 223467888888888888 56788886653
No 40
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=87.03 E-value=2.7 Score=34.10 Aligned_cols=69 Identities=10% Similarity=0.006 Sum_probs=45.8
Q ss_pred eEeEEecCC------ChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccCCCCC
Q psy2803 17 GLGAIFEQG------TDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSLHSSP 86 (141)
Q Consensus 17 ~IGaIFd~~------d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~~~~~ 86 (141)
+||.+.+.. ......+++.|++.+|........++...+.. ..+|.-.+.+.+++++ +.|++|+..+..
T Consensus 1 ~iG~l~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~~v~~~~~D-~~~~~~~a~~~a~~li~~~~v~aiig~~~s~~ 79 (346)
T cd06330 1 KIGVITFLSGRAAIFGEPARNGAELAVEEINAAGGIGGRKIELVVRD-EAGKPDEAIREARELVENEGVDMLIGLISSGV 79 (346)
T ss_pred CeeEEeecCCchhhhcHHHHHHHHHHHHHHhhcCCcCCeEEEEEEec-CCCCHHHHHHHHHHHHhccCCcEEEcccchHH
Confidence 377777542 23567899999999997653333455554432 2356677778888887 578888876543
No 41
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=87.01 E-value=2.3 Score=34.50 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=43.4
Q ss_pred eEeEEecCC------ChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccCCCCC
Q psy2803 17 GLGAIFEQG------TDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSLHSSP 86 (141)
Q Consensus 17 ~IGaIFd~~------d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~~~~~ 86 (141)
+||.|++.. ....+.+++.|++.+|..--....++...+..-. +|.-.+.+++++++ +.|++|++.|..
T Consensus 1 ~IG~l~p~sG~~a~~g~~~~~g~~~a~~~iN~~gGi~G~~i~l~~~D~~-~~p~~a~~~a~~Li~~~~V~aiiG~~~s~~ 79 (333)
T cd06331 1 KIGLLFSLSGPAAISEPSLRNAALLAIEEINAAGGILGRPLELVVEDPA-SDPAFAAKAARRLIRDDKVDAVFGCYTSAS 79 (333)
T ss_pred CeEEEecCCCccccccHHHHHHHHHHHHHHHhcCCCCCeEEEEEEECCC-CCHHHHHHHHHHHHhccCCcEEEecccHHH
Confidence 478777642 2456788999999999753222224444433221 35566666777776 578999877653
No 42
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=86.88 E-value=1 Score=39.22 Aligned_cols=28 Identities=11% Similarity=0.036 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhhcccC-cceeEEEEEE
Q psy2803 29 VQSAFKFAMLTHNQNTTT-RRFELQAYVD 56 (141)
Q Consensus 29 ~ElAFk~AI~~IN~~k~l-~~f~L~p~I~ 56 (141)
.-.|..+||++||++..+ ++.+|.++|.
T Consensus 43 ~~~Am~~Aie~IN~~~~lLp~~~Lg~~i~ 71 (472)
T cd06374 43 RVEAMFHTLDRINADPVLLPNITLGCEIR 71 (472)
T ss_pred HHHHHHHHHHHHhCCcccCCCceeccEEE
Confidence 457999999999998875 5589999887
No 43
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=86.82 E-value=0.89 Score=38.63 Aligned_cols=58 Identities=16% Similarity=0.029 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhhcccC-cceeEEEEEEeeC-CCChhHHHHHH-----------HHHH-----HHHhcccCCCCC
Q psy2803 29 VQSAFKFAMLTHNQNTTT-RRFELQAYVDVIN-TADAFKLSRLS-----------IRKM-----LVTNLMSLHSSP 86 (141)
Q Consensus 29 ~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~-~~DSFeaSkka-----------C~ql-----~~a~~~~~~~~~ 86 (141)
...|+++|+++||+.... +..++...+.... +..++...+++ |+.. +.|++||++|..
T Consensus 44 ~~~a~~lAv~~IN~~ggil~g~~l~~~~~D~~~~~~a~~~~~~li~~~~~~~~~~c~~~~~~~~V~aIiGp~~S~~ 119 (410)
T cd06363 44 LFQAMRFAVEEINNSTSLLPGVTLGYEIFDHCSDSANFPPTLSLLSVNGSRIEPQCNYTNYQPRVVAVIGPDSSTL 119 (410)
T ss_pred HHHHHHHHHHHHhCCCccCCCCeeceEEEecCCcHHHHHHHHHHHhccCcccCcccccccCCCCeEEEECCCccHH
Confidence 468999999999998653 3457777766432 22466666654 5422 678888887754
No 44
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=86.33 E-value=2.6 Score=34.07 Aligned_cols=56 Identities=18% Similarity=0.105 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhhccc-CcceeEEEEEEeeCCCChhHHHHHHHHHHH-----------------HHhcccCCCC
Q psy2803 29 VQSAFKFAMLTHNQNTT-TRRFELQAYVDVINTADAFKLSRLSIRKML-----------------VTNLMSLHSS 85 (141)
Q Consensus 29 ~ElAFk~AI~~IN~~k~-l~~f~L~p~I~~V~~~DSFeaSkkaC~ql~-----------------~a~~~~~~~~ 85 (141)
...|+.+|++++|+... ++..+|...+.. ...|.-.+.+++++++. .|++|+.+|.
T Consensus 29 ~~~~~~~Av~~iN~~~~~l~g~~l~l~~~D-~~~~~~~a~~~a~~li~~~~~~~~~~~~~~~~~v~aiiG~~~S~ 102 (348)
T cd06350 29 AAEAMLFAVEEINNDPDLLPNITLGYHIYD-SCCSPAVALRAALDLLLSGEGTTPPYSCRKQPKVVAVIGPGSSS 102 (348)
T ss_pred HHHHHHHHHHHHcCCCccCCCCceeEEEEe-cCCcchHHHHHHHHHHhcCCCCCCCCcCCCCCceEEEECCCccH
Confidence 45689999999998743 344567766554 23456788888888873 3488887654
No 45
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=84.26 E-value=3.1 Score=35.88 Aligned_cols=31 Identities=16% Similarity=-0.128 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHhhhcccCcceeEEEEEEe
Q psy2803 27 DEVQSAFKFAMLTHNQNTTTRRFELQAYVDV 57 (141)
Q Consensus 27 ~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~ 57 (141)
-+...|+.+||++||+..-++..+|...+..
T Consensus 35 ~~~~~am~~AieeIN~~~~Lpg~~L~~~i~D 65 (403)
T cd06361 35 FLQTLAMIHAIEMINNSTLLLGVTLGYEIYD 65 (403)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEceEEEe
Confidence 4556799999999998764455778877653
No 46
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=82.44 E-value=4.6 Score=32.92 Aligned_cols=68 Identities=9% Similarity=-0.003 Sum_probs=43.2
Q ss_pred EeEEecCC------ChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccCCCCC
Q psy2803 18 LGAIFEQG------TDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSLHSSP 86 (141)
Q Consensus 18 IGaIFd~~------d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~~~~~ 86 (141)
||.+.+.. ......+++.|++++|..-.....+++..+.. ...|.=.+.+.+++++ +.|++|+.++..
T Consensus 2 IG~~~~lsG~~a~~G~~~~~g~~~A~~~iN~~ggi~g~~v~l~~~D-~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 79 (344)
T cd06345 2 IGVLAPLSGGASTTGEAMWNGAELAAEEINAAGGILGRKVELVFED-TEGSPEDAVRAFERLVSQDKVDAVVGGYSSEV 79 (344)
T ss_pred eeEEEecCCcccccCHHHHHHHHHHHHHHHHcCCCCCceEEEEEec-CCCCHHHHHHHHHHHhccCCceEEECCcchHH
Confidence 66666532 24568899999999997643222234333321 2234446777888888 568999887754
No 47
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=81.87 E-value=6 Score=31.56 Aligned_cols=67 Identities=15% Similarity=0.178 Sum_probs=39.0
Q ss_pred EeEEecCC------ChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCC
Q psy2803 18 LGAIFEQG------TDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSS 85 (141)
Q Consensus 18 IGaIFd~~------d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~ 85 (141)
||.+.+-. ......+++.|++++|+.......++...+.. ...|.-.+.+.+.+++ +.|++|+.++.
T Consensus 2 iG~~~p~sG~~~~~g~~~~~g~~~a~~~iN~~ggi~g~~i~~~~~D-~~~~~~~~~~~~~~li~~~v~aiiG~~~s~ 77 (334)
T cd06342 2 IGVAGPLTGPNAALGKDIKNGAQLAVEDINAKGGGKGVKLELVVED-DQADPKQAVAVAQKLVDDGVVGVVGHLNSG 77 (334)
T ss_pred eeEeccCCCcchhhcHHHHHHHHHHHHHHHhcCCCCCeEEEEEEec-CCCChHHHHHHHHHHHhCCceEEECCCccH
Confidence 66666532 14467899999999998743333344444422 2234444433333333 67899987775
No 48
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=79.04 E-value=5.5 Score=32.17 Aligned_cols=69 Identities=9% Similarity=-0.025 Sum_probs=42.2
Q ss_pred eEeEEecCC------ChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccCCCCC
Q psy2803 17 GLGAIFEQG------TDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSLHSSP 86 (141)
Q Consensus 17 ~IGaIFd~~------d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~~~~~ 86 (141)
+||.+.+-. ......+++.|++++|..-.....+++..+.. +.+|.=.+.+.+-+++ +.+++|+.+|..
T Consensus 1 kIG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~G~~iel~~~D-~~~~p~~a~~~a~~li~~~~v~~viG~~~s~~ 79 (312)
T cd06346 1 KIGILLPLTGDLASYGPPMADAAELAVKEVNAAGGVLGEPVTLVTAD-TQTDPAAGVAAATKLVNVDGVPGIVGAACSGV 79 (312)
T ss_pred CceeeccCCCchhhcChhHHHHHHHHHHHHHHhCCCCCceEEEEECC-CCCCHHHHHHHHHHHHhhcCCCEEEccccchh
Confidence 366666532 24467899999999997643323355544332 2235566666777776 466888776553
No 49
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=77.40 E-value=6.5 Score=33.22 Aligned_cols=59 Identities=8% Similarity=-0.026 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhhccc-CcceeEEEEEEeeCCCC---hhHHHHHHHHHH----HHHhcccCCCCC
Q psy2803 28 EVQSAFKFAMLTHNQNTT-TRRFELQAYVDVINTAD---AFKLSRLSIRKM----LVTNLMSLHSSP 86 (141)
Q Consensus 28 ~~ElAFk~AI~~IN~~k~-l~~f~L~p~I~~V~~~D---SFeaSkkaC~ql----~~a~~~~~~~~~ 86 (141)
..-.|+++||+++|+... ++..+|...+..-..++ .-.....+..+. +.|++||++|+.
T Consensus 19 ~~~~a~~lAieeiN~~g~il~g~~l~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~v~aviGp~~S~~ 85 (399)
T cd06384 19 RVGPAIRMAVERIQNKGKLLRGYTITLLNKSSELNGGCSESLAPLHAVDLKLYSDPDVFFGPGCVYP 85 (399)
T ss_pred hhHHHHHHHHHHHhccCCcCCCceEEEEEeccCCccccchhhhHHHHHHHHhhcCCCEEECCCCchH
Confidence 456799999999998764 34567777765433222 122222222222 356889888754
No 50
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=73.01 E-value=12 Score=30.62 Aligned_cols=58 Identities=12% Similarity=0.055 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCC
Q psy2803 27 DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSS 85 (141)
Q Consensus 27 ~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~ 85 (141)
...+.+++.|++++|..-.....+++..+.. +.+|.-.+.+.+++++ +.+++|++++.
T Consensus 17 ~~~~~g~~~a~~~iN~~GGi~G~~i~l~~~D-~~~~p~~a~~~a~~lv~~~v~aiiG~~~s~ 77 (342)
T cd06329 17 ELVRRGLQLAADEINAKGGVDGRPIELVEED-NKGSPQEALRKAQKAIDDGVRLVVQGNSSS 77 (342)
T ss_pred HHHHHHHHHHHHHHHhcCCcCCeEEEEEecc-CCCChHHHHHHHHHHHHhCCeEEEcccchH
Confidence 4567899999999998533222244444321 2245556667777777 57788887664
No 51
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=70.97 E-value=20 Score=29.37 Aligned_cols=72 Identities=8% Similarity=0.063 Sum_probs=41.5
Q ss_pred cceeeEeEEecCC------ChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccC
Q psy2803 13 VHHIGLGAIFEQG------TDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSL 82 (141)
Q Consensus 13 p~~I~IGaIFd~~------d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~ 82 (141)
+..|+||.+++.. ......+.+.|++.+|..--....++...+.. +.+|.=.+.+.+-+++ +.+++|+.
T Consensus 4 ~~~i~iG~~~~~sG~~a~~g~~~~~g~~~a~~~~Na~gGi~G~~i~l~~~D-~~~~~~~a~~~a~~li~~~~v~avvG~~ 82 (362)
T cd06343 4 DTEIKIGNTMPLSGPASAYGVIGRTGAAYFFMINNDQGGINGRKIELIVED-DGYSPPKTVEQTRKLVESDEVFAMVGGL 82 (362)
T ss_pred CceEEEeeccCCCCchhhhcHHHHHHHHHHHHHHHhcCCcCCeEEEEEEec-CCCChHHHHHHHHHHHhhcCeEEEEecC
Confidence 5679999999863 24457789999999987532222244444331 1123223333333333 46688876
Q ss_pred CCC
Q psy2803 83 HSS 85 (141)
Q Consensus 83 ~~~ 85 (141)
.+.
T Consensus 83 ~s~ 85 (362)
T cd06343 83 GTP 85 (362)
T ss_pred CcH
Confidence 654
No 52
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=68.41 E-value=28 Score=29.33 Aligned_cols=76 Identities=12% Similarity=0.031 Sum_probs=43.4
Q ss_pred hhcccceeeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhc
Q psy2803 9 ISLVVHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNL 79 (141)
Q Consensus 9 ~~~~p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~ 79 (141)
+......|+||.+..-.. ...+.+.+.|++++|..-.....+++..+.. +..|.=.+...+=+++ +.+++
T Consensus 19 ~~~~~~~I~IG~l~plSG~~a~~G~~~~~g~~~av~~iNa~GGi~G~~ielv~~D-~~~~p~~a~~~~~~Li~~~V~~ii 97 (369)
T PRK15404 19 HAALADDIKIAIVGPMSGPVAQYGDMEFTGARQAIEDINAKGGIKGDKLEGVEYD-DACDPKQAVAVANKVVNDGIKYVI 97 (369)
T ss_pred ccccCCceEEEEeecCCCcchhcCHhHHHHHHHHHHHHHhcCCCCCeEEEEEeec-CCCCHHHHHHHHHHHHhCCceEEE
Confidence 344556899999987532 3468899999999997532222244433332 1133333333332333 56678
Q ss_pred ccCCCC
Q psy2803 80 MSLHSS 85 (141)
Q Consensus 80 ~~~~~~ 85 (141)
|+..|.
T Consensus 98 G~~~s~ 103 (369)
T PRK15404 98 GHLCSS 103 (369)
T ss_pred cCCCch
Confidence 876654
No 53
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=67.75 E-value=14 Score=29.53 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=40.4
Q ss_pred eeeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHHH-----HHhcccCC
Q psy2803 15 HIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKML-----VTNLMSLH 83 (141)
Q Consensus 15 ~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql~-----~a~~~~~~ 83 (141)
+|+||.+.+... .....+++.|++.+|..-.....++...+. +...+-.....+.+.++ .+++|+..
T Consensus 1 ~i~IG~~~~~sG~~a~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~--D~~~~~~~a~~~~~~l~~~~~v~~vvg~~~ 78 (343)
T PF13458_consen 1 PIKIGVLVPLSGPFAPYGQDFLRGAELAVDEINAAGGINGRKIELVVY--DDGGDPAQAVQAARKLIDDDGVDAVVGPLS 78 (343)
T ss_dssp SEEEEEEE-SSSTTHHHHHHHHHHHHHHHHHHHHTTEETTEEEEEEEE--E-TT-HHHHHHHHHHHHHTSTESEEEESSS
T ss_pred CEEEEEEECCCChhhhhhHHHHHHHHHHHHHHHHhCCcCCccceeeec--cCCCChHHHHHHHHHhhhhcCcEEEEecCC
Confidence 488999998644 235678999999999863212224443322 33444566666666663 46777754
Q ss_pred C
Q psy2803 84 S 84 (141)
Q Consensus 84 ~ 84 (141)
+
T Consensus 79 s 79 (343)
T PF13458_consen 79 S 79 (343)
T ss_dssp H
T ss_pred c
Confidence 3
No 54
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=64.52 E-value=12 Score=30.23 Aligned_cols=69 Identities=10% Similarity=0.038 Sum_probs=37.4
Q ss_pred eEeEEecCC------ChHHHHHHHHHHHHhhhccc----CcceeEEEEEEeeCCCCh---hHHHHHHHHHH-HHHhcccC
Q psy2803 17 GLGAIFEQG------TDEVQSAFKFAMLTHNQNTT----TRRFELQAYVDVINTADA---FKLSRLSIRKM-LVTNLMSL 82 (141)
Q Consensus 17 ~IGaIFd~~------d~~~ElAFk~AI~~IN~~k~----l~~f~L~p~I~~V~~~DS---FeaSkkaC~ql-~~a~~~~~ 82 (141)
+||.+++-. ......+.+.|++.+|..-- ....+++..+.. +..|. .+..+++++.= +.+++|+.
T Consensus 1 ~IG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~ggi~~g~~g~~i~l~~~D-~~~~~~~a~~~~~~li~~~~v~aviG~~ 79 (345)
T cd06338 1 RIGASLSLTGPLAGGGQLTQRGYELWVEDVNAAGGIKGGGKGYPVELIYYD-DQSNPARAARAYERLITQDKVDFLLGPY 79 (345)
T ss_pred CeeEEEeCCCccccccHHHHHHHHHHHHHHHhcCCcccCCCCceEEEEEec-CCCCHHHHHHHHHHHHhhcCccEEecCC
Confidence 367777632 23457899999999997421 111233333322 22333 33334444331 67889988
Q ss_pred CCCC
Q psy2803 83 HSSP 86 (141)
Q Consensus 83 ~~~~ 86 (141)
++..
T Consensus 80 ~s~~ 83 (345)
T cd06338 80 SSGL 83 (345)
T ss_pred cchh
Confidence 7653
No 55
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=63.83 E-value=7.1 Score=32.10 Aligned_cols=59 Identities=20% Similarity=0.162 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHhhhcccC-cc-eeEEEEEEeeCCCChhHHHHHHHHH-HHHHhcccCCCC
Q psy2803 27 DEVQSAFKFAMLTHNQNTTT-RR-FELQAYVDVINTADAFKLSRLSIRK-MLVTNLMSLHSS 85 (141)
Q Consensus 27 ~~~ElAFk~AI~~IN~~k~l-~~-f~L~p~I~~V~~~DSFeaSkkaC~q-l~~a~~~~~~~~ 85 (141)
.....+++.|++.+|..--. .+ .++...-..-++..+.+..+++|+. =+.|++|++.+.
T Consensus 17 ~~~~~g~~la~~~iN~~gGi~G~~i~lv~~D~~~~p~~a~~~a~~Li~~~~V~aiiG~~~s~ 78 (347)
T cd06335 17 VSIRRGARLAIDEINAAGGVLGRKLELVERDDRGNPARGLQNAQELAADEKVVAVLGGLHTP 78 (347)
T ss_pred HHHHHHHHHHHHHHHhcCCcCCeEEEEEeccCCCCcHHHHHHHHHHhccCCeEEEEcCCCCH
Confidence 34678899999999976322 12 3333222222333456666667665 267788876543
No 56
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=63.67 E-value=37 Score=25.64 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=39.4
Q ss_pred eEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccCCCC
Q psy2803 17 GLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSLHSS 85 (141)
Q Consensus 17 ~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~~~~ 85 (141)
+||.++.... .+...+++.|++.+|........++...+. +...+-.....+++.+ +.+++|+..+.
T Consensus 1 ~ig~~~p~sg~~~~~~~~~~~g~~~a~~~~n~~gg~~g~~v~~~~~--d~~~~~~~~~~~~~~l~~~~v~~iig~~~~~ 77 (298)
T cd06268 1 KIGVLLPLSGPLAALGEPVRNGAELAVEEINAAGGILGRKIELVVE--DTQGDPEAAAAAARELVDDGVDAVIGPLSSG 77 (298)
T ss_pred CeeeeecCcCchhhcChhHHHHHHHHHHHHHhcCCCCCeEEEEEEe--cCCCCHHHHHHHHHHHHhCCceEEEcCCcch
Confidence 3777776532 356778999999999763222234444332 3444445555555555 46788876553
No 57
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=56.18 E-value=32 Score=27.88 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH-----HHHhcccCCCC
Q psy2803 28 EVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM-----LVTNLMSLHSS 85 (141)
Q Consensus 28 ~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql-----~~a~~~~~~~~ 85 (141)
....+.+.|++++|..-.....+++.. ..+...+-..+..+++.| +.+++|++.|.
T Consensus 17 ~~~~g~~lA~~~iNa~ggi~G~~ielv--~~D~~~~p~~a~~~a~~li~~~~v~aiiG~~~s~ 77 (332)
T cd06344 17 EILRGVAQAQTEINLQGGINGKLLKVV--IANDGNDPEIAKKVADELVKDPEILGVVGHYSSD 77 (332)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCeEEEE--EECCCCChHHHHHHHHHHhcccCceEEEcCCCcH
Confidence 345689999999996432222244443 235556788888899988 46788887554
No 58
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=55.99 E-value=51 Score=27.42 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=38.7
Q ss_pred eeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHH--HHHHHHH-----HHHhcccC
Q psy2803 16 IGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLS--RLSIRKM-----LVTNLMSL 82 (141)
Q Consensus 16 I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaS--kkaC~ql-----~~a~~~~~ 82 (141)
|+||.|..-.- .....+.+.|++.+|..--...-++.. +-.+|..... ....+.+ +.+++|++
T Consensus 1 I~IG~l~plsG~~a~~g~~~~~g~~lav~~iN~~GGi~G~~i~l----~~~Dd~~~p~~a~~~a~~Lv~~~~V~~iiG~~ 76 (359)
T TIGR03407 1 IKVGILHSLSGTMAISETTLKDAELMAIEEINASGGVLGKKIEP----VVEDGASDWPTFAEKARKLITQDKVAAVFGCW 76 (359)
T ss_pred CeEEEEeCCCCchhhcchhHHHHHHHHHHHHHhcCCCCCcEEEE----EEeCCCCCHHHHHHHHHHHHhhCCCcEEEcCC
Confidence 57888886421 335679999999999764222112222 2234544433 3344444 46788887
Q ss_pred CCCC
Q psy2803 83 HSSP 86 (141)
Q Consensus 83 ~~~~ 86 (141)
.|+.
T Consensus 77 ~S~~ 80 (359)
T TIGR03407 77 TSAS 80 (359)
T ss_pred cHHH
Confidence 6654
No 59
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=52.16 E-value=71 Score=25.51 Aligned_cols=68 Identities=6% Similarity=-0.068 Sum_probs=36.7
Q ss_pred eeEeEEecCC------ChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccCCC
Q psy2803 16 IGLGAIFEQG------TDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSLHS 84 (141)
Q Consensus 16 I~IGaIFd~~------d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~~~ 84 (141)
|+||.+.+-. ......+++.|++.+|........++...+.. +.+|.=...+.+.+++ +.++++++.+
T Consensus 1 i~IG~~~~lsG~~a~~g~~~~~~~~~a~~~iN~~ggi~G~~v~l~~~D-~~~d~~~~~~~~~~l~~~~~v~avig~~~s 78 (336)
T cd06326 1 IVLGQSAPLSGPAAALGRAYRAGAQAYFDAVNAAGGVNGRKIELVTLD-DGYEPERTVANTRKLIEDDKVFALFGYVGT 78 (336)
T ss_pred CEEEEeccCCCcchhhHHHHHHHHHHHHHHHHhcCCcCCceEEEEEeC-CCCChHHHHHHHHHHHhhcCcEEEEeCCCc
Confidence 5788888632 13457799999999997532222233332221 1112223334455544 4567776544
No 60
>PF00031 Cystatin: Cystatin domain; InterPro: IPR000010 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The cystatins are cysteine proteinase inhibitors belonging to MEROPS inhibitor family I25, clan IH [, , ]. They mainly inhibit peptidases belonging to peptidase families C1 (papain family) and C13 (legumain family). The cystatin family includes: The Type 1 cystatins, which are intracellular cystatins that are present in the cytosol of many cell types, but can also appear in body fluids at significant concentrations. They are single-chain polypeptides of about 100 residues, which have neither disulphide bonds nor carbohydrate side chains. The Type 2 cystatins, which are mainly extracellular secreted polypeptides synthesised with a 19-28 residue signal peptide. They are broadly distributed and found in most body fluids. The Type 3 cystatins, which are multidomain proteins. The mammalian representatives of this group are the kininogens. There are three different kininogens in mammals: H- (high molecular mass, IPR002395 from INTERPRO) and L- (low molecular mass) kininogen which are found in a number of species, and T-kininogen that is found only in rat. Unclassified cystatins. These are cystatin-like proteins found in a range of organisms: plant phytocystatins, fetuin in mammals, insect cystatins and a puff adder venom cystatin which inhibits metalloproteases of the MEROPS peptidase family M12 (astacin/adamalysin). Also a number of the cystatins-like proteins have been shown to be devoid of inhibitory activity. All true cystatins inhibit cysteine peptidases of the papain family (MEROPS peptidase family C1), and some also inhibit legumain family enzymes (MEROPS peptidase family C13). These peptidases play key roles in physiological processes, such as intracellular protein degradation (cathepsins B, H and L), are pivotal in the remodelling of bone (cathepsin K), and may be important in the control of antigen presentation (cathepsin S, mammalian legumain). Moreover, the activities of such peptidases are increased in pathophysiological conditions, such as cancer metastasis and inflammation. Additionally, such peptidases are essential for several pathogenic parasites and bacteria. Thus in animals cystatins not only have capacity to regulate normal body processes and perhaps cause disease when down-regulated, but in other organisms may also participate in defence against biotic and abiotic stress. ; GO: 0004869 cysteine-type endopeptidase inhibitor activity; PDB: 3L0R_B 2W9P_K 2W9Q_A 3S67_A 3QRD_D 1R4C_G 3GAX_A 1TIJ_B 1G96_A 3NX0_A ....
Probab=50.28 E-value=44 Score=22.49 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=18.9
Q ss_pred CCChHHHHHHHHHHHHhhhccc
Q psy2803 24 QGTDEVQSAFKFAMLTHNQNTT 45 (141)
Q Consensus 24 ~~d~~~ElAFk~AI~~IN~~k~ 45 (141)
.++++.+.+-++|+..+|+..+
T Consensus 8 ~~dp~v~~~~~~al~~~N~~~~ 29 (94)
T PF00031_consen 8 PNDPEVQEAAEFALDKFNEQSN 29 (94)
T ss_dssp TTSHHHHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHHhCc
Confidence 4678889999999999999863
No 61
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=48.96 E-value=68 Score=26.46 Aligned_cols=66 Identities=14% Similarity=0.086 Sum_probs=37.7
Q ss_pred eEeEEecCC------ChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChh--HHHHHHHHHH-----HHHhcccCC
Q psy2803 17 GLGAIFEQG------TDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAF--KLSRLSIRKM-----LVTNLMSLH 83 (141)
Q Consensus 17 ~IGaIFd~~------d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSF--eaSkkaC~ql-----~~a~~~~~~ 83 (141)
+||.+..-. ......+.+.|++.+|..-....-+++. +-.+|.. ......++.| +.+++|++.
T Consensus 1 kIG~~~plsG~~a~~G~~~~~g~~la~~~iN~~GGi~G~~iel----v~~D~~~~p~~a~~~a~~Li~~~~V~~iiG~~~ 76 (348)
T cd06355 1 KVGILHSLSGTMAISETTLKDAELLAIEEINAAGGVLGRKIEA----VVEDGASDWPTFAEKARKLLTQDKVAAVFGCWT 76 (348)
T ss_pred CeEEEEcCCCcccccchhHHHHHHHHHHHHHhcCCCCCcEEEE----EEeCCCCCHHHHHHHHHHHHHhCCCcEEEeccc
Confidence 366666532 1345789999999999763222213332 2224433 3444556665 467888877
Q ss_pred CCC
Q psy2803 84 SSP 86 (141)
Q Consensus 84 ~~~ 86 (141)
|..
T Consensus 77 S~~ 79 (348)
T cd06355 77 SAS 79 (348)
T ss_pred hhh
Confidence 653
No 62
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=44.53 E-value=76 Score=26.04 Aligned_cols=70 Identities=9% Similarity=-0.056 Sum_probs=40.2
Q ss_pred EeEEecCC------ChHHHHHHHHHHHHhhhcccCc---c-eeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccCC
Q psy2803 18 LGAIFEQG------TDEVQSAFKFAMLTHNQNTTTR---R-FELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSLH 83 (141)
Q Consensus 18 IGaIFd~~------d~~~ElAFk~AI~~IN~~k~l~---~-f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~~ 83 (141)
||.|..-. ....+.+++.|++.+|...... + .++...+..- ..|.-.+.+.+-+++ +.+++|+.+
T Consensus 2 IG~l~plsG~~a~~g~~~~~g~~lA~~~iN~~GGi~~~G~~~~iel~~~D~-~~~p~~a~~~~~~li~~~~v~~iiG~~~ 80 (347)
T cd06336 2 IGFSGPLSGPAAAWGLPGLRGVQLAAEEINAAGGIKVGGKKYKVEIVSYDD-KYDPAEAAANARRLVQQDGVKFILGPIG 80 (347)
T ss_pred cceeccCcCcccccChhhHHHHHHHHHHHHhcCCcccCCceeeEEEEEecC-CCCHHHHHHHHHHHHhhcCceEEEeCCC
Confidence 56665532 1346789999999999764221 1 2344433321 134445555555555 467888877
Q ss_pred CCCCc
Q psy2803 84 SSPNL 88 (141)
Q Consensus 84 ~~~~~ 88 (141)
++...
T Consensus 81 s~~~~ 85 (347)
T cd06336 81 GGITA 85 (347)
T ss_pred Cchhh
Confidence 76543
No 63
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=42.61 E-value=87 Score=26.73 Aligned_cols=68 Identities=12% Similarity=0.055 Sum_probs=38.0
Q ss_pred eeEeEEecCC------ChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH-----HHHhcccCCC
Q psy2803 16 IGLGAIFEQG------TDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM-----LVTNLMSLHS 84 (141)
Q Consensus 16 I~IGaIFd~~------d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql-----~~a~~~~~~~ 84 (141)
|+||.+..-. ....+.+.+.|++++|..--...-+++..+ .+....=..+...-+.+ +.+++|++.|
T Consensus 1 IkIG~~~plSG~~a~~G~~~~~G~~lAv~~iNa~GGi~Gr~ielv~--~D~~~~p~~a~~~a~~li~~d~v~~viG~~~S 78 (374)
T TIGR03669 1 IKLGVLEDRSGNFALVGTPKWHASQLAIEEINKSGGILGRQIELID--PDPQSDNERYQELTRRLLNRDKVDALWAGYSS 78 (374)
T ss_pred CEEEEEeCCCCCchhccHHHHHHHHHHHHHHHhcCCCCCceeEEEE--eCCCCCHHHHHHHHHHHHHhCCCCEEEcCCch
Confidence 5788888642 134678999999999975322111333222 23222333344444444 4568888766
Q ss_pred C
Q psy2803 85 S 85 (141)
Q Consensus 85 ~ 85 (141)
.
T Consensus 79 ~ 79 (374)
T TIGR03669 79 A 79 (374)
T ss_pred H
Confidence 4
No 64
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=41.69 E-value=1.2e+02 Score=25.27 Aligned_cols=68 Identities=16% Similarity=0.125 Sum_probs=36.7
Q ss_pred eEeEEecCC------ChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCC-ChhHHHHHHHHHH----HHHhcccCCCC
Q psy2803 17 GLGAIFEQG------TDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTA-DAFKLSRLSIRKM----LVTNLMSLHSS 85 (141)
Q Consensus 17 ~IGaIFd~~------d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~-DSFeaSkkaC~ql----~~a~~~~~~~~ 85 (141)
+||.+.+-. ......+++.|++.+|..--....++...+. +.. |.=.+...+=+++ +.+++|++.+.
T Consensus 1 kIG~~~plSG~~a~~g~~~~~g~~la~~~iN~~GGi~G~~ielv~~--D~~~~p~~a~~~a~~li~~~~V~aiiG~~~s~ 78 (360)
T cd06357 1 RVGVLFSRTGVTAAIERSQRNGALLAIEEINAAGGVLGRELEPVEY--DPGGDPDAYRALAERLLREDGVRVIFGCYTSS 78 (360)
T ss_pred CeEEEEcCCCCchhccHHHHHHHHHHHHHHhhcCCCCCeEEEEEEE--CCCCCHHHHHHHHHHHHhhCCCcEEEeCccHH
Confidence 477777542 2456789999999999763222223333222 222 2222222233333 67788887765
Q ss_pred C
Q psy2803 86 P 86 (141)
Q Consensus 86 ~ 86 (141)
.
T Consensus 79 ~ 79 (360)
T cd06357 79 S 79 (360)
T ss_pred H
Confidence 4
No 65
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=37.75 E-value=1.3e+02 Score=24.43 Aligned_cols=67 Identities=9% Similarity=0.031 Sum_probs=35.4
Q ss_pred eEeEEecCC------ChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH-----HHHhcccCCCC
Q psy2803 17 GLGAIFEQG------TDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM-----LVTNLMSLHSS 85 (141)
Q Consensus 17 ~IGaIFd~~------d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql-----~~a~~~~~~~~ 85 (141)
+||.+.+.. ......+++.|++.+|..-.....++...+. +...+=..+..+.+-+ +.+++|++++.
T Consensus 1 kIG~~~plsG~~a~~g~~~~~g~~la~~~iN~~gGi~G~~i~l~~~--D~~~~p~~a~~~a~~Li~~~~v~aviG~~~s~ 78 (333)
T cd06358 1 RIGLLVPLSGPAGIFGPSCEAAAELAVEEINAAGGILGREVELVIV--DDGSPPAEAAAAAARLVDEGGVDAIIGWHTSA 78 (333)
T ss_pred CeEEEecCcCchhhcchhHHHHHHHHHHHHHhcCCcCCcEEEEEEE--CCCCChHHHHHHHHHHHHhCCCcEEEecCcHH
Confidence 367777632 2345678999999999654322224433322 2222222333334433 45677776543
No 66
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=35.64 E-value=1.6e+02 Score=23.33 Aligned_cols=66 Identities=11% Similarity=0.018 Sum_probs=36.6
Q ss_pred eEeEEecCC------ChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH-----HHHhcccCCCC
Q psy2803 17 GLGAIFEQG------TDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM-----LVTNLMSLHSS 85 (141)
Q Consensus 17 ~IGaIFd~~------d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql-----~~a~~~~~~~~ 85 (141)
+||.+++-. ......+++.|++.+|. --....++...+. +...+-+...++-+.+ +.+++|+.++.
T Consensus 1 ~IG~~~~lsG~~~~~g~~~~~g~~~a~~~iN~-ggi~g~~i~l~~~--d~~~~~~~a~~~~~~li~~~~v~~vig~~~s~ 77 (312)
T cd06333 1 KIGAILSLTGPAASLGIPEKKTLELLPDEINA-GGIGGEKVELIVL--DDGSDPTKAVTNARKLIEEDKVDAIIGPSTTP 77 (312)
T ss_pred CeeEEeecCCcchhhCHHHHHHHHHHHHHHhc-CCcCCeEEEEEEe--cCCCCHHHHHHHHHHHHhhCCeEEEECCCCCH
Confidence 367776532 24467899999999997 4333334444332 3333333443333333 45677776553
No 67
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=34.29 E-value=1.2e+02 Score=24.51 Aligned_cols=65 Identities=9% Similarity=0.158 Sum_probs=36.7
Q ss_pred eEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH-----HHHhcccCCCC
Q psy2803 17 GLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM-----LVTNLMSLHSS 85 (141)
Q Consensus 17 ~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql-----~~a~~~~~~~~ 85 (141)
+||.++.... .....+++.|++++|..- ...+++..+. +...+=......++.+ +.+++|++++.
T Consensus 1 ~IG~~~plsG~~a~~g~~~~~g~~lAv~~inggi--~G~~i~l~~~--D~~~~p~~a~~~~~~lv~~~~v~~viG~~~s~ 76 (333)
T cd06359 1 KIGFITTLSGPAAALGQDMRDGFQLALKQLGGKL--GGLPVEVVVE--DDGLKPDVAKQAAERLIKRDKVDFVTGVVFSN 76 (333)
T ss_pred CeEEEEecccchhhhhHHHHHHHHHHHHHhCCcc--CCEEEEEEec--CCCCChHHHHHHHHHHHhhcCCcEEEccCCcH
Confidence 3666665422 345778999999998332 2223333322 3322334555566666 35688887765
No 68
>KOG4440|consensus
Probab=34.05 E-value=88 Score=30.99 Aligned_cols=63 Identities=10% Similarity=0.189 Sum_probs=43.8
Q ss_pred hhhcccceeeEeEEecCCChHHHHHHHHHHHHhhhcccCcceeEEEEEEee-CCCChhHHHHHHHHHH
Q psy2803 8 LISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVI-NTADAFKLSRLSIRKM 74 (141)
Q Consensus 8 ~~~~~p~~I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V-~~~DSFeaSkkaC~ql 74 (141)
.+++.|...+||+..-+ ...|.-|+.+++..|+.- .+. +++..-+.| -..+.-.+.-.+|++|
T Consensus 28 va~~np~t~nig~Vlst--~~~ee~F~~t~~hln~~~-~s~-k~~~~aksv~~d~n~i~t~~~VC~~l 91 (993)
T KOG4440|consen 28 VAACNPKTVNIGAVLST--RKHEEMFRETVNHLNKRH-GSW-KIQLNAKSVTHDPNAIQTALSVCEDL 91 (993)
T ss_pred hcCCCccceeeeeeeec--hhHHHHHHHHHHHhhccc-cce-EEEEccccccCCCcHHHHHHHHHHHH
Confidence 35678889999999865 445778999999999542 222 333322222 2245788999999999
No 69
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=33.37 E-value=1.4e+02 Score=24.16 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCC-ChhHHHHHHHHHH----HHHhcccCCCCC
Q psy2803 27 DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTA-DAFKLSRLSIRKM----LVTNLMSLHSSP 86 (141)
Q Consensus 27 ~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~-DSFeaSkkaC~ql----~~a~~~~~~~~~ 86 (141)
.....+.+.|++++|..-.....++...+. +.. |.=.+.+.+=+++ +.+++|++.|+.
T Consensus 17 ~~~~~g~~~a~~~iN~~ggi~G~~i~l~~~--D~~~~~~~a~~~a~~li~~~~V~~i~G~~~s~~ 79 (340)
T cd06349 17 TQWKRAFDLALDEINAAGGVGGRPLNIVFE--DSKSDPRQAVTIAQKFVADPRIVAVLGDFSSGV 79 (340)
T ss_pred ccHHHHHHHHHHHHHhhCCcCCeEEEEEEe--CCCCChHHHHHHHHHHhccCCeEEEECCCccHh
Confidence 345678999999999764333334444433 222 3333333344444 467888876654
No 70
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=29.75 E-value=89 Score=25.52 Aligned_cols=68 Identities=18% Similarity=0.108 Sum_probs=35.7
Q ss_pred EeEEecCCC------hHHHHHHHHHHHHhhhccc-CcceeEEEEEEe--eCCCChhHHHHHHHHHH-HHHhcccCCCC
Q psy2803 18 LGAIFEQGT------DEVQSAFKFAMLTHNQNTT-TRRFELQAYVDV--INTADAFKLSRLSIRKM-LVTNLMSLHSS 85 (141)
Q Consensus 18 IGaIFd~~d------~~~ElAFk~AI~~IN~~k~-l~~f~L~p~I~~--V~~~DSFeaSkkaC~ql-~~a~~~~~~~~ 85 (141)
||.+.+..- .....+++.|++.+|+... ...-+++..+.. -++..+-...+++.+.= +.|++|+.+|.
T Consensus 2 IG~~~~lsG~~a~~G~~~~~g~~lav~~inn~~ggi~G~~i~lv~~D~~~~p~~a~~~~~~li~~~~V~avvG~~~S~ 79 (333)
T cd06328 2 IGLITDLSGPLAAYGKQTLTGFMLGLEYATGGTMQVDGRPIEVIVKDDAGNPEVAVSLARELIGDDGVDILVGSTSSG 79 (333)
T ss_pred eEEEEecCCchhhhhHHHHHHHHHHHHHHHhcCCCcCCEEEEEEEecCCCChHHHHHHHHHHHHhcCCeEEEccCCcH
Confidence 666665421 4567899999999975421 221233333221 11112333444444442 67788877764
No 71
>cd00042 CY Substituted updates: Jan 30, 2002
Probab=26.32 E-value=1.7e+02 Score=20.07 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=18.3
Q ss_pred CCChHHHHHHHHHHHHhhhccc
Q psy2803 24 QGTDEVQSAFKFAMLTHNQNTT 45 (141)
Q Consensus 24 ~~d~~~ElAFk~AI~~IN~~k~ 45 (141)
.++++.+.+-++|++.+|+..+
T Consensus 8 ~~d~~~~~~~~~a~~~~N~~~~ 29 (105)
T cd00042 8 ANDPEVQELADFAVAEYNKKSN 29 (105)
T ss_pred CCCHHHHHHHHHHHHHHHhhcC
Confidence 3567889999999999998764
No 72
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=24.69 E-value=1.6e+02 Score=24.82 Aligned_cols=75 Identities=13% Similarity=0.140 Sum_probs=42.7
Q ss_pred ceeeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH-----HHHhcccC
Q psy2803 14 HHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM-----LVTNLMSL 82 (141)
Q Consensus 14 ~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql-----~~a~~~~~ 82 (141)
+.|+||.+..-.- .+...+-+.|++.+|..-....-+++..+. +....=.......+.+ +.+++|+.
T Consensus 9 ~~IkIGv~~plsG~~A~~G~~~~~ga~lAv~~iNa~Ggi~G~~velv~~--D~~~dp~~a~~~A~~li~~~~V~~vvG~~ 86 (366)
T COG0683 9 DTIKIGVVLPLSGPAAAYGQQIKNGAELAVEEINAAGGILGRKVELVVE--DDASDPATAAAVARKLITQDGVDAVVGPT 86 (366)
T ss_pred CceEEEEEecCCchhhhhChHHHHHHHHHHHHHhhhCCcCCceEEEEEe--cCCCChHHHHHHHHHHHhhcCceEEEEec
Confidence 4699999998522 345677889999999764211111333322 2112233333334443 56788888
Q ss_pred CCCCCcch
Q psy2803 83 HSSPNLIN 90 (141)
Q Consensus 83 ~~~~~~~~ 90 (141)
.|.+-.+-
T Consensus 87 ~S~~~~a~ 94 (366)
T COG0683 87 TSGVALAA 94 (366)
T ss_pred cCcccccc
Confidence 77665443
No 73
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=23.75 E-value=3.2e+02 Score=22.27 Aligned_cols=67 Identities=12% Similarity=-0.001 Sum_probs=35.3
Q ss_pred eEeEEecCC------ChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHH-HHH----HHHhcccCCCC
Q psy2803 17 GLGAIFEQG------TDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSI-RKM----LVTNLMSLHSS 85 (141)
Q Consensus 17 ~IGaIFd~~------d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC-~ql----~~a~~~~~~~~ 85 (141)
+||.+.+-. ......+++.|++.+|..--...-++...+. +...+=+.+...= +++ +.+++|+++|.
T Consensus 1 ~IG~~~~lSG~~a~~G~~~~~g~~la~~~iNa~gGi~Gr~v~lv~~--D~~~~p~~a~~~~~~Li~~~~V~aiiG~~~s~ 78 (334)
T cd06356 1 KVGSLEDRSGNFALYGTPKVHATQLAVDEINASGGILGREVELVDY--DTQSDNERYQQYAQRLALQDKVDVVWGGISSA 78 (334)
T ss_pred CeEEEecCCCchhhccHHHHHHHHHHHHHHHhcCCCCCceEEEEEE--CCCCCHHHHHHHHHHHHHhCCCCEEEeCcchH
Confidence 367666532 2456788999999999643221113333322 2221223333333 333 56788887764
No 74
>COG3790 Predicted membrane protein [Function unknown]
Probab=22.94 E-value=20 Score=26.69 Aligned_cols=19 Identities=32% Similarity=0.578 Sum_probs=16.7
Q ss_pred hcCCCccccccceeccCCC
Q psy2803 94 RLGFEPKFTESFGVFCPEP 112 (141)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~ 112 (141)
-+||+|+=.=--|+|||-+
T Consensus 65 GVGFrpr~~~wqg~FsPll 83 (97)
T COG3790 65 GVGFRPRSVLWQGIFSPLL 83 (97)
T ss_pred cccCchHHHHHHHHhhhHH
Confidence 3899999888889999965
No 75
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=21.91 E-value=28 Score=26.93 Aligned_cols=10 Identities=50% Similarity=1.358 Sum_probs=7.7
Q ss_pred cccceeccCC
Q psy2803 102 TESFGVFCPE 111 (141)
Q Consensus 102 ~~~~~~~~~~ 111 (141)
-|-||++||.
T Consensus 10 de~~G~~CPT 19 (146)
T PF08702_consen 10 DEDFGSYCPT 19 (146)
T ss_dssp STTTTEEEE-
T ss_pred CccccCCCCC
Confidence 3789999995
No 76
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=21.21 E-value=1.8e+02 Score=23.42 Aligned_cols=54 Identities=9% Similarity=0.020 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH-----HHHhcccCCCC
Q psy2803 28 EVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM-----LVTNLMSLHSS 85 (141)
Q Consensus 28 ~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql-----~~a~~~~~~~~ 85 (141)
....+.+.|++++| .- ....++...+. +....-.......+.+ +.+++|++.+.
T Consensus 19 ~~~~g~~la~~~iN-gg-i~G~~v~l~~~--D~~~~p~~a~~~~~~l~~~~~V~aviG~~~s~ 77 (334)
T cd06327 19 GSVEAAELAVEDFG-GG-VLGRPIELVVA--DHQNKADVAAAKAREWIDRDGVDMIVGGPNSA 77 (334)
T ss_pred HHHHHHHHHHHHhc-CC-ccCeEEEEEEe--cCCCCchHHHHHHHHHHhhcCceEEECCccHH
Confidence 45678999999999 32 22224433322 3333344555556665 35677776543
No 77
>KOG1056|consensus
Probab=20.47 E-value=1.9e+02 Score=29.03 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=39.1
Q ss_pred hhcccceeeEeEEecC----------------CChHHHHHHHHHHHHhhhccc-CcceeEEEEEEeeCCCChhHHH
Q psy2803 9 ISLVVHHIGLGAIFEQ----------------GTDEVQSAFKFAMLTHNQNTT-TRRFELQAYVDVINTADAFKLS 67 (141)
Q Consensus 9 ~~~~p~~I~IGaIFd~----------------~d~~~ElAFk~AI~~IN~~k~-l~~f~L~p~I~~V~~~DSFeaS 67 (141)
....+..|-|||+|.- ..-+.-.|-.+|++++|+ +. +++.||-+.+..--..|.+...
T Consensus 25 ~~~~~gdi~lgglFpvh~k~~~~~~cg~~~~~~gi~r~eAml~al~~iN~-~~lLp~~kLG~~i~DTCs~~t~ale 99 (878)
T KOG1056|consen 25 VARIPGDIILGGLFPVHEKGGGAPQCGRIREPRGIQRLEAMLFALDEINN-PDLLPNIKLGARILDTCSRSTYALE 99 (878)
T ss_pred eccCCCCeEEcceeeecccCCCCCcccccccchhHHHHHHHHHHHHHhcC-cccCCCceeeeeEeeccCCcHHHHH
Confidence 4455667779999842 111234588999999999 65 4669999988765555555443
Done!