Query psy2803
Match_columns 141
No_of_seqs 106 out of 159
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 17:21:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2803.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2803hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpa_A Glutamate receptor 4; P 99.3 9.6E-12 3.3E-16 98.1 8.1 77 11-87 1-82 (389)
2 3hsy_A Glutamate receptor 2; l 98.6 6.1E-08 2.1E-12 78.2 7.2 69 14-86 1-72 (376)
3 3qel_B Glutamate [NMDA] recept 98.6 2E-08 6.9E-13 82.4 3.6 71 13-87 2-77 (364)
4 3o21_A Glutamate receptor 3; p 98.6 1.5E-07 5.3E-12 76.8 8.0 76 12-87 2-82 (389)
5 3h6g_A Glutamate receptor, ion 98.4 3E-07 1E-11 73.9 6.2 74 13-86 2-83 (395)
6 3saj_A Glutamate receptor 1; r 98.2 1.3E-06 4.3E-11 70.6 5.3 70 11-85 6-78 (384)
7 3kg2_A Glutamate receptor 2; I 98.2 3.1E-06 1.1E-10 74.3 7.2 68 15-86 2-72 (823)
8 3qek_A NMDA glutamate receptor 98.1 2.7E-06 9.4E-11 68.2 5.3 68 12-82 2-73 (384)
9 3om0_A Glutamate receptor, ion 97.9 1.9E-05 6.6E-10 63.4 7.0 72 14-85 3-81 (393)
10 3h5l_A Putative branched-chain 96.3 0.012 4.1E-07 47.4 7.7 75 12-86 11-95 (419)
11 4f11_A Gamma-aminobutyric acid 96.0 0.017 5.8E-07 46.7 7.0 72 12-85 11-96 (433)
12 1jdp_A NPR-C, atrial natriuret 96.0 0.0096 3.3E-07 48.4 5.4 74 13-86 7-96 (441)
13 1dp4_A Atrial natriuretic pept 95.9 0.02 7E-07 46.0 6.9 72 15-86 2-89 (435)
14 2e4u_A Metabotropic glutamate 94.5 0.042 1.4E-06 46.8 5.0 62 12-74 11-89 (555)
15 3sm9_A Mglur3, metabotropic gl 94.5 0.073 2.5E-06 44.9 6.3 62 12-74 10-88 (479)
16 3i45_A Twin-arginine transloca 94.0 0.13 4.6E-06 40.6 6.7 73 13-86 3-85 (387)
17 3n0x_A Possible substrate bind 94.0 0.095 3.3E-06 41.5 5.7 73 13-86 2-85 (374)
18 3ks9_A Mglur1, metabotropic gl 93.3 0.14 4.9E-06 43.3 6.0 51 8-58 10-81 (496)
19 4gnr_A ABC transporter substra 91.3 0.67 2.3E-05 36.0 7.1 74 11-85 3-86 (353)
20 3mq4_A Mglur7, metabotropic gl 91.3 0.45 1.5E-05 39.8 6.6 45 13-57 14-75 (481)
21 3ipc_A ABC transporter, substr 88.9 1 3.6E-05 34.7 6.4 70 15-85 2-80 (356)
22 3lop_A Substrate binding perip 85.8 1.8 6.1E-05 33.7 6.2 72 13-85 3-84 (364)
23 1usg_A Leucine-specific bindin 85.4 2.2 7.6E-05 32.5 6.4 70 15-85 2-80 (346)
24 3td9_A Branched chain amino ac 83.6 2.3 7.8E-05 33.0 5.9 71 11-85 12-92 (366)
25 3hut_A Putative branched-chain 82.9 2.7 9.1E-05 32.4 6.0 72 13-85 2-83 (358)
26 3lkb_A Probable branched-chain 82.0 9.2 0.00031 29.9 8.9 68 12-80 4-81 (392)
27 3eaf_A ABC transporter, substr 80.6 3.5 0.00012 32.5 6.0 67 13-80 2-82 (391)
28 4eyg_A Twin-arginine transloca 79.3 3.7 0.00013 31.6 5.7 70 13-85 4-83 (368)
29 3n0w_A ABC branched chain amin 78.2 2.9 0.0001 32.7 4.8 70 13-85 4-84 (379)
30 4f06_A Extracellular ligand-bi 77.9 5.1 0.00017 31.6 6.2 72 12-86 2-84 (371)
31 3i09_A Periplasmic branched-ch 75.3 4.8 0.00016 31.4 5.3 70 13-85 2-82 (375)
32 1pea_A Amidase operon; gene re 65.0 10 0.00036 29.7 5.2 71 13-84 5-85 (385)
33 4evq_A Putative ABC transporte 54.0 12 0.00041 28.8 3.7 71 12-85 13-93 (375)
34 3sg0_A Extracellular ligand-bi 44.9 8.9 0.0003 29.5 1.7 68 11-85 23-100 (386)
35 1roa_A Cystatin D; inhibitor o 40.1 58 0.002 22.4 5.2 29 17-45 10-41 (122)
36 3snr_A Extracellular ligand-bi 38.0 11 0.00037 28.6 1.1 68 11-85 3-80 (362)
37 2w9q_A Multicystatin; protease 33.1 72 0.0024 20.7 4.5 22 24-45 8-29 (87)
38 3gax_A Cystatin-C; cysteine pr 32.9 76 0.0026 21.8 4.8 28 18-45 10-39 (120)
39 1yvb_I Cystatin; cysteine prot 31.5 57 0.002 21.8 3.9 27 19-45 4-32 (111)
40 2ch9_A Cystatin F; inhibitor, 28.9 92 0.0032 22.0 4.8 28 18-45 17-46 (131)
41 3ima_B Cysteine proteinase inh 25.6 39 0.0013 22.5 2.2 28 18-45 3-34 (91)
42 3ul5_A Canecystatin-1; defense 22.1 1.1E+02 0.0037 22.6 4.2 29 17-45 45-78 (139)
No 1
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=99.27 E-value=9.6e-12 Score=98.09 Aligned_cols=77 Identities=22% Similarity=0.360 Sum_probs=68.4
Q ss_pred cccceeeEeEEecCCChHHHHHHHHHHHHhhhcccC--cceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCC
Q psy2803 11 LVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTT--RRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSS 85 (141)
Q Consensus 11 ~~p~~I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l--~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~ 85 (141)
+.|..|+|||||+.+..+.+.||++||++||++... ++++|.+.+...+.+|++.+.+++|+++ +.|++||..|.
T Consensus 1 a~P~~I~IG~lf~~~~~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~ 80 (389)
T 4gpa_A 1 AFPSSVQIGGLFIRNTDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKR 80 (389)
T ss_dssp -CCSEEEEEEEECTTCHHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEECCCTT
T ss_pred CCCCeEEEEEEEcCCChHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHHhcCCEEEEeCCccH
Confidence 468999999999999999999999999999988653 4589999999999999999999999998 78999998876
Q ss_pred CC
Q psy2803 86 PN 87 (141)
Q Consensus 86 ~~ 87 (141)
.-
T Consensus 81 ~~ 82 (389)
T 4gpa_A 81 SV 82 (389)
T ss_dssp TH
T ss_pred HH
Confidence 53
No 2
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=98.63 E-value=6.1e-08 Score=78.25 Aligned_cols=69 Identities=20% Similarity=0.414 Sum_probs=61.0
Q ss_pred ceeeEeEEecCCChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCCC
Q psy2803 14 HHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSSP 86 (141)
Q Consensus 14 ~~I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~~ 86 (141)
.+|+||+||+......+.|+++||+++|.. ..+|+..+...+.+|++++.+++|+++ +.|++|+..|..
T Consensus 1 ~~i~IG~i~~~sg~~~~~~~~lAv~~iN~~----g~~l~~~~~d~~~~d~~~a~~~~~~li~~~V~aiiG~~~S~~ 72 (376)
T 3hsy_A 1 NSIQIGGLFPRGADQEYSAFRVGMVQFSTS----EFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (376)
T ss_dssp CEEEEEEEEETTCHHHHHHHHHHHHHTCCS----SCEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CceeEEEEeCCCCHHHHHHHHHHHHHHhcC----CeEEEEEEeecCCCChHHHHHHHHHHHhcCcEEEECCCchhH
Confidence 368999999988888899999999999976 358888888888889999999999999 688999998764
No 3
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=98.60 E-value=2e-08 Score=82.45 Aligned_cols=71 Identities=14% Similarity=0.069 Sum_probs=50.7
Q ss_pred cceeeEeEEecCCChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHh-cccCCCCCC
Q psy2803 13 VHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTN-LMSLHSSPN 87 (141)
Q Consensus 13 p~~I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~-~~~~~~~~~ 87 (141)
+..+.||+||..++. |.||+.|+.+.|... ++++|++.+.+++.+|+|++.+++|+++ +.|+ +|+..+.+-
T Consensus 2 ~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s~~~a 77 (364)
T 3qel_B 2 PPSIGIAVILVGTSD--EVAIKDAHEKDDFHH--LSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDTDQEA 77 (364)
T ss_dssp CCEEEEEEEEESSCC--HHHHTC-----------CCSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESSCCTH
T ss_pred CCceEEEEEEcccch--hhhhccccCcccccc--CCccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCCCchH
Confidence 456889999977665 899999999999653 5589999999999999999999999999 3354 566655433
No 4
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=98.57 E-value=1.5e-07 Score=76.77 Aligned_cols=76 Identities=22% Similarity=0.357 Sum_probs=64.9
Q ss_pred ccceeeEeEEecCCChHHHHHHHHHHHHhhhcccC--cceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCCC
Q psy2803 12 VVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTT--RRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSSP 86 (141)
Q Consensus 12 ~p~~I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l--~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~~ 86 (141)
.|+.|+||+||+......+.|+++||+++|+.... +..+|...+..-..+|++++.+.+|+++ +.|++|+..|..
T Consensus 2 ~~~~i~IG~i~~~sg~~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~~V~aiiG~~~S~~ 81 (389)
T 3o21_A 2 FPNTISIGGLFMRNTVQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQMS 81 (389)
T ss_dssp CCSEEEEEEEECTTCHHHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTTTCSCEEECCCTTT
T ss_pred CCceeEEEEEeCCCCHHHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEeCCChhH
Confidence 47889999999987778899999999999987654 4578988888766669999999999999 789999998765
Q ss_pred C
Q psy2803 87 N 87 (141)
Q Consensus 87 ~ 87 (141)
-
T Consensus 82 ~ 82 (389)
T 3o21_A 82 M 82 (389)
T ss_dssp H
T ss_pred H
Confidence 3
No 5
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=98.43 E-value=3e-07 Score=73.87 Aligned_cols=74 Identities=30% Similarity=0.358 Sum_probs=61.5
Q ss_pred cceeeEeEEecCCC----hHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCC
Q psy2803 13 VHHIGLGAIFEQGT----DEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHS 84 (141)
Q Consensus 13 p~~I~IGaIFd~~d----~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~ 84 (141)
|..|+||+||+... ...+.|+++||+++|+.... ++.+|...++.+...|++...+++|+++ +.|++|+..|
T Consensus 2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~~~V~aiiG~~~S 81 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHS 81 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHHHCCSCEECCSSH
T ss_pred CcceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhhcCcEEEECCCCh
Confidence 57899999998632 35789999999999987653 4578999998888889999999999998 6788998876
Q ss_pred CC
Q psy2803 85 SP 86 (141)
Q Consensus 85 ~~ 86 (141)
..
T Consensus 82 ~~ 83 (395)
T 3h6g_A 82 SS 83 (395)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 6
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=98.22 E-value=1.3e-06 Score=70.57 Aligned_cols=70 Identities=17% Similarity=0.359 Sum_probs=59.8
Q ss_pred cccceeeEeEEecCCChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCC
Q psy2803 11 LVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSS 85 (141)
Q Consensus 11 ~~p~~I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~ 85 (141)
..+..|+||+||+......+.|++.||+++|... +|+..+...+.+|++++.+++|+++ +.|++|+..|.
T Consensus 6 ~~~~~ikIG~~~~~sg~~~~~a~~lAv~~iN~~g-----~l~~~~~D~~~~d~~~a~~~~~~l~~~~V~aiiG~~~S~ 78 (384)
T 3saj_A 6 AMPNNIQIGGLFPNQQSQEHAAFRFALSQLTEPP-----KLLPQIDIVNISDSFEMTYRFCSQFSKGVYAIFGFYERR 78 (384)
T ss_dssp CCCSEEEEEEEESCSSSHHHHHHHHHHTTCCSSS-----EEEEEEEECCTTCHHHHHHHHHHHHHTTCSCEEECCCHH
T ss_pred CCCcceeEEEEecCCCHHHHHHHHHHHHHHhcCC-----ccceeeEecccCchhhHHHHHHHHHhcCeEEEECCCCHH
Confidence 4578899999999766688999999999999763 7788877777779999999999998 67899988764
No 7
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=98.17 E-value=3.1e-06 Score=74.28 Aligned_cols=68 Identities=21% Similarity=0.412 Sum_probs=60.8
Q ss_pred eeeEeEEecCCChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCCC
Q psy2803 15 HIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSSP 86 (141)
Q Consensus 15 ~I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~~ 86 (141)
+|+||+||+......+.|+++||++||++. .+|...++....+|++.+.+++|+++ +.|++||..|..
T Consensus 2 ~ikIG~l~~~tg~~~~~a~~lAveeiN~~~----~~l~~~~~D~~~~~~~~a~~~~~~l~~~~V~aiiG~~~S~~ 72 (823)
T 3kg2_A 2 SIQIGGLFPRGADQEYSAFRVGMVQFSTSE----FRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (823)
T ss_dssp EEEEEEEEETTCHHHHHHHHHHHHHTCCSS----CEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred cceEEEEeCCCChHHHHHHHHHHHHHhcCC----eEEEEEEEEcCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Confidence 689999999877788999999999999874 68899988888889999999999998 689999998765
No 8
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=98.12 E-value=2.7e-06 Score=68.21 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=54.9
Q ss_pred ccceeeEeEEecCCChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccC
Q psy2803 12 VVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSL 82 (141)
Q Consensus 12 ~p~~I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~ 82 (141)
.+++|+||+||+.. ..+.|++.||+++|........+|...+.. +..|++++.+++|++| +.|++|++
T Consensus 2 ~~~~i~IG~i~~~s--~~~~~~~lAv~~iN~~~~~~~~~l~~~~~d-~~~d~~~a~~~~~~~Li~~~V~aiiG~~ 73 (384)
T 3qek_A 2 DPKIVNIGAVLSTK--KHEQIFREAVNQANKRHFTRKIQLQATSVT-HRPNAIQMALSVCEDLISSQVYAILVSH 73 (384)
T ss_dssp CCEEEEEEEEESSH--HHHHHHHHHHHHHHHHSCCSSEEEEEEEEE-CCSSHHHHHHHHHHHTGGGTEEEEEECC
T ss_pred CceEEEEeEEeeCc--hHHHHHHHHHHHHhccccCCceEEEEEEec-ccCCHHHHHHHHHHHHHHcCceEEEEec
Confidence 46789999999876 678999999999998653334667666554 6789999999999975 58899953
No 9
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=97.93 E-value=1.9e-05 Score=63.43 Aligned_cols=72 Identities=13% Similarity=0.127 Sum_probs=59.2
Q ss_pred ceeeEeEEecCCC---hHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCC
Q psy2803 14 HHIGLGAIFEQGT---DEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSS 85 (141)
Q Consensus 14 ~~I~IGaIFd~~d---~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~ 85 (141)
..|+||+||+... ...+.|+++||+++|+.... +..+|...+..-..+++..+.+++|+++ +.|++|+..|.
T Consensus 3 ~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~ 81 (393)
T 3om0_A 3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILPKGVVSVLGPSSSP 81 (393)
T ss_dssp CEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGGGCCSCEECCSSCH
T ss_pred cceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHHhcCcEEEECCCCch
Confidence 4699999998643 24789999999999987653 4478888888776667899999999988 78999999983
No 10
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=96.34 E-value=0.012 Score=47.38 Aligned_cols=75 Identities=8% Similarity=-0.059 Sum_probs=51.0
Q ss_pred ccceeeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhccc
Q psy2803 12 VVHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMS 81 (141)
Q Consensus 12 ~p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~ 81 (141)
....|+||.++.... ...+.+++.|++++|..-.....++...+..-...|.-.+.+.+++++ +.+++|+
T Consensus 11 ~~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~aiiG~ 90 (419)
T 3h5l_A 11 SSDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGILGRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALIAG 90 (419)
T ss_dssp --CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBTTBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEEECS
T ss_pred cCCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcCceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEEEcc
Confidence 456899999998643 456789999999999764322335555544322236666667777776 5789999
Q ss_pred CCCCC
Q psy2803 82 LHSSP 86 (141)
Q Consensus 82 ~~~~~ 86 (141)
+.|.+
T Consensus 91 ~~s~~ 95 (419)
T 3h5l_A 91 YNLEN 95 (419)
T ss_dssp CCSSC
T ss_pred ccchh
Confidence 98875
No 11
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=96.00 E-value=0.017 Score=46.70 Aligned_cols=72 Identities=11% Similarity=0.051 Sum_probs=53.7
Q ss_pred ccceeeEeEEecCCC--------hHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH-----HHH
Q psy2803 12 VVHHIGLGAIFEQGT--------DEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM-----LVT 77 (141)
Q Consensus 12 ~p~~I~IGaIFd~~d--------~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql-----~~a 77 (141)
....|+||++++-.. .....|+++|++++|+. .. +..+|...+.. +..|.-.+.+.+++++ +.|
T Consensus 11 ~~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g~l~g~~l~l~~~D-~~~~~~~a~~~a~~li~~~~~v~a 88 (433)
T 4f11_A 11 SSPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-SLLRPYFLDLRLYD-TECDNAKGLKAFYDAIKYGPNHLM 88 (433)
T ss_dssp CCCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-TTTTTCEEEEEEEE-CTTCHHHHHHHHHHHHHHSCCCSE
T ss_pred CCCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc-CCCCCCEEEEEEec-CCCCHHHHHHHHHHHHhcCCceEE
Confidence 456899999998533 24678999999999987 43 34577766553 3367889999999988 356
Q ss_pred hcccCCCC
Q psy2803 78 NLMSLHSS 85 (141)
Q Consensus 78 ~~~~~~~~ 85 (141)
++|+.+|.
T Consensus 89 viG~~~S~ 96 (433)
T 4f11_A 89 VFGGVCPS 96 (433)
T ss_dssp EEECCSHH
T ss_pred EECCCcch
Confidence 88887764
No 12
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=95.98 E-value=0.0096 Score=48.39 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=47.4
Q ss_pred cceeeEeEEecCCC------hHHHHHHHHHHHHhhhccc-----CcceeEEEEEEeeCCCCh--hHHHHHHHHH---HHH
Q psy2803 13 VHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTT-----TRRFELQAYVDVINTADA--FKLSRLSIRK---MLV 76 (141)
Q Consensus 13 p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~-----l~~f~L~p~I~~V~~~DS--FeaSkkaC~q---l~~ 76 (141)
...|+||++++... .....|+++||++||++.. ++..+|...+..-.-+.. ..+.+..|.. =+.
T Consensus 7 ~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~a~~~~~~~~~~~~~~~v~ 86 (441)
T 1jdp_A 7 PQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRVAAARGAKPD 86 (441)
T ss_dssp CCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTHHHHHHHHHHHHTTTCCCS
T ss_pred CCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchhHHHHHHHHHHhhccCCce
Confidence 46799999998633 2467899999999998754 345677777654322222 2234556753 257
Q ss_pred HhcccCCCCC
Q psy2803 77 TNLMSLHSSP 86 (141)
Q Consensus 77 a~~~~~~~~~ 86 (141)
|++|+.+|..
T Consensus 87 aiiG~~~S~~ 96 (441)
T 1jdp_A 87 LILGPVCEYA 96 (441)
T ss_dssp EEECCCSHHH
T ss_pred EEECCCchhh
Confidence 7888887654
No 13
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=95.87 E-value=0.02 Score=45.98 Aligned_cols=72 Identities=4% Similarity=-0.038 Sum_probs=48.9
Q ss_pred eeeEeEEecCCC------hHHHH-HHHHHHHHhhhcccC-cceeEEEEEEeeCC----CChhHHHHHHHHHH----HHHh
Q psy2803 15 HIGLGAIFEQGT------DEVQS-AFKFAMLTHNQNTTT-RRFELQAYVDVINT----ADAFKLSRLSIRKM----LVTN 78 (141)
Q Consensus 15 ~I~IGaIFd~~d------~~~El-AFk~AI~~IN~~k~l-~~f~L~p~I~~V~~----~DSFeaSkkaC~ql----~~a~ 78 (141)
.|+||++|.-.. ..... |+++||+++|+.... +..+|...+..-.. .++-.+...+++++ +.|+
T Consensus 2 ~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~av 81 (435)
T 1dp4_A 2 DLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAVF 81 (435)
T ss_dssp EEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSEE
T ss_pred ceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceEE
Confidence 589999998531 13344 999999999987654 35677777664311 12346667777777 5678
Q ss_pred cccCCCCC
Q psy2803 79 LMSLHSSP 86 (141)
Q Consensus 79 ~~~~~~~~ 86 (141)
+|+.+|..
T Consensus 82 iG~~~S~~ 89 (435)
T 1dp4_A 82 LGPGCVYS 89 (435)
T ss_dssp ECCCSHHH
T ss_pred ECCCChHH
Confidence 88876644
No 14
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=94.49 E-value=0.042 Score=46.84 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=42.7
Q ss_pred ccceeeEeEEecCCC----------------hHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH
Q psy2803 12 VVHHIGLGAIFEQGT----------------DEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM 74 (141)
Q Consensus 12 ~p~~I~IGaIFd~~d----------------~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql 74 (141)
....|+||++|.-.. .....|+++||++||++..+ ++.+|...+..- -+|.-.+.+.+.+++
T Consensus 11 ~~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~-~~~~~~a~~~a~~~l 89 (555)
T 2e4u_A 11 IEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDT-CSRDTYALEQSLEFV 89 (555)
T ss_dssp ECCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEEC-TTCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEEC-CCChHHHHHHHHHHH
Confidence 345799999997421 13467999999999998754 467888887642 345556666655554
No 15
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=94.46 E-value=0.073 Score=44.91 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=41.0
Q ss_pred ccceeeEeEEecC----------------CChHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH
Q psy2803 12 VVHHIGLGAIFEQ----------------GTDEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM 74 (141)
Q Consensus 12 ~p~~I~IGaIFd~----------------~d~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql 74 (141)
.+.-|.|||+|.- ..-+...|+++||++||++..+ ++.+|.+.+..- -.|.-.+.+.+-+++
T Consensus 10 ~~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~-~~~~~~a~~~~~~ll 88 (479)
T 3sm9_A 10 IEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDT-CSRDTYALEQSLEFV 88 (479)
T ss_dssp ECCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEEC-TTCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEec-CCChHHHHHHHHHHH
Confidence 3445789999964 1234567999999999998764 468888887652 234444444444443
No 16
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=94.00 E-value=0.13 Score=40.60 Aligned_cols=73 Identities=12% Similarity=0.033 Sum_probs=48.7
Q ss_pred cceeeEeEEecCCC-----hHHHHHHHHHHHHhhhcccCcc-eeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccC
Q psy2803 13 VHHIGLGAIFEQGT-----DEVQSAFKFAMLTHNQNTTTRR-FELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSL 82 (141)
Q Consensus 13 p~~I~IGaIFd~~d-----~~~ElAFk~AI~~IN~~k~l~~-f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~ 82 (141)
...|+||.++.... .....+++.|++++|+...... .++...+.. +.+|.-.+.+.+++++ +.|++|+.
T Consensus 3 ~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D-~~~~~~~~~~~~~~li~~~~v~aiiG~~ 81 (387)
T 3i45_A 3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRD-DGGDPGKAVTAAQELLTRHGVHALAGTF 81 (387)
T ss_dssp CCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEE-CTTCHHHHHHHHHHHHHHHCCSEEEECC
T ss_pred CCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEec-CCCCHHHHHHHHHHHHHhcCCEEEECCc
Confidence 35799999998533 2367899999999998753222 244444332 3356777777777776 45788887
Q ss_pred CCCC
Q psy2803 83 HSSP 86 (141)
Q Consensus 83 ~~~~ 86 (141)
.+..
T Consensus 82 ~s~~ 85 (387)
T 3i45_A 82 LSHV 85 (387)
T ss_dssp SHHH
T ss_pred chHH
Confidence 6543
No 17
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=93.97 E-value=0.095 Score=41.51 Aligned_cols=73 Identities=4% Similarity=0.020 Sum_probs=49.2
Q ss_pred cceeeEeEEecCCC------hHHHHHHHHHHHHhhhccc-CcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhccc
Q psy2803 13 VHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTT-TRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMS 81 (141)
Q Consensus 13 p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~-l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~ 81 (141)
.+.|+||.++.-.. .....+++.|++++|.... ....++...+.. +.+|.-.+.+.+++++ +.|++|+
T Consensus 2 ~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi~G~~i~l~~~D-~~~~~~~a~~~~~~li~~~~v~aiiG~ 80 (374)
T 3n0x_A 2 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKD-DQSKPDLSKAALAEAYQDDGADIAIGT 80 (374)
T ss_dssp --CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEETTEEEEEEEEE-CTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCcCCEEEEEEEec-CCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 35799999998642 3567899999999997421 222344444332 4467788888888887 5678888
Q ss_pred CCCCC
Q psy2803 82 LHSSP 86 (141)
Q Consensus 82 ~~~~~ 86 (141)
+.|..
T Consensus 81 ~~s~~ 85 (374)
T 3n0x_A 81 SSSAA 85 (374)
T ss_dssp SSHHH
T ss_pred CCcHH
Confidence 87653
No 18
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=93.25 E-value=0.14 Score=43.31 Aligned_cols=51 Identities=12% Similarity=0.081 Sum_probs=36.4
Q ss_pred hhhcccceeeEeEEecCC------------------C--hHHHHHHHHHHHHhhhcccC-cceeEEEEEEee
Q psy2803 8 LISLVVHHIGLGAIFEQG------------------T--DEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVI 58 (141)
Q Consensus 8 ~~~~~p~~I~IGaIFd~~------------------d--~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V 58 (141)
.....+.-|-|||+|.-. . -+...|+.+||++||++..+ ++.+|.+.+..-
T Consensus 10 ~~~~~~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~ 81 (496)
T 3ks9_A 10 SVARMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDS 81 (496)
T ss_dssp CCEEECCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEEC
T ss_pred cceecCCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEc
Confidence 334445567899999521 1 23467999999999998764 568999998753
No 19
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=91.25 E-value=0.67 Score=35.98 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=42.7
Q ss_pred cccceeeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcc
Q psy2803 11 LVVHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLM 80 (141)
Q Consensus 11 ~~p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~ 80 (141)
...++|+||.+++-.- .....+.+.|++++|..-....-+++..+.. +..|.=.+.+.+-+++ +.+++|
T Consensus 3 ~~~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~Gr~ielv~~D-~~~~p~~a~~~a~~li~~~~v~~i~g 81 (353)
T 4gnr_A 3 VEEKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDGKQIEVVDKD-NKSETAEAASVTTNLVTQSKVSAVVG 81 (353)
T ss_dssp ---CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBEEEEEEEE-CTTCHHHHHHHHHHHHHTSCCSEEEC
T ss_pred CCCCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEec-CCCCHHHHHHHHHHHHhhCCceEEec
Confidence 4457899999998532 3467799999999998643222244443331 2234444444444444 355667
Q ss_pred cCCCC
Q psy2803 81 SLHSS 85 (141)
Q Consensus 81 ~~~~~ 85 (141)
+++|.
T Consensus 82 ~~~s~ 86 (353)
T 4gnr_A 82 PATSG 86 (353)
T ss_dssp CCSHH
T ss_pred cccCc
Confidence 66554
No 20
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=91.25 E-value=0.45 Score=39.81 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=33.7
Q ss_pred cceeeEeEEecCC----------------ChHHHHHHHHHHHHhhhcccC-cceeEEEEEEe
Q psy2803 13 VHHIGLGAIFEQG----------------TDEVQSAFKFAMLTHNQNTTT-RRFELQAYVDV 57 (141)
Q Consensus 13 p~~I~IGaIFd~~----------------d~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~ 57 (141)
...|.|||+|.-. .-+...|+.+||++||++..+ ++.+|.+.+..
T Consensus 14 ~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D 75 (481)
T 3mq4_A 14 EGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILD 75 (481)
T ss_dssp CCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEE
T ss_pred CCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEe
Confidence 3468999999631 124567999999999998764 46788888764
No 21
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=88.89 E-value=1 Score=34.71 Aligned_cols=70 Identities=7% Similarity=-0.042 Sum_probs=45.3
Q ss_pred eeeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCC
Q psy2803 15 HIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSS 85 (141)
Q Consensus 15 ~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~ 85 (141)
+|+||.++.... .....+++.|++++|........++...+.. ..+|.-...+.+++++ +.+++|+..+.
T Consensus 2 ~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi~G~~~~l~~~d-~~~~~~~~~~~~~~l~~~~v~~iig~~~s~ 80 (356)
T 3ipc_A 2 DVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGD-DVSDPKQGISVANKFVADGVKFVVGHANSG 80 (356)
T ss_dssp CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBCEEEEEEE-CTTCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred eEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCCCCeEEEEEEec-CCCCHHHHHHHHHHHHHCCCcEEEcCCCcH
Confidence 589999998532 3467799999999998643222344443332 2345666666677776 56688876653
No 22
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=85.85 E-value=1.8 Score=33.68 Aligned_cols=72 Identities=8% Similarity=-0.040 Sum_probs=43.0
Q ss_pred cceeeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccC
Q psy2803 13 VHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSL 82 (141)
Q Consensus 13 p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~ 82 (141)
...|+||.++.... .....+++.|++++|..-.....++...+.. +.+|.=.+.+.+.+++ +.+++|++
T Consensus 3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D-~~~~~~~~~~~~~~l~~~~~v~~iig~~ 81 (364)
T 3lop_A 3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGINGETIRLVARD-DEQKIEQTVRNVRDMARVDNPVALLTVV 81 (364)
T ss_dssp --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEE-CTTCHHHHHHHHHHHHHHSCEEEEECCC
T ss_pred CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcCCeEEEEEEeC-CCCCHHHHHHHHHHHHhhcCcEEEEecC
Confidence 35799999998632 2457789999999997643222234433322 2234444555555555 35688876
Q ss_pred CCC
Q psy2803 83 HSS 85 (141)
Q Consensus 83 ~~~ 85 (141)
.+.
T Consensus 82 ~s~ 84 (364)
T 3lop_A 82 GTA 84 (364)
T ss_dssp CHH
T ss_pred CCH
Confidence 654
No 23
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=85.35 E-value=2.2 Score=32.47 Aligned_cols=70 Identities=13% Similarity=0.019 Sum_probs=42.8
Q ss_pred eeeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCC
Q psy2803 15 HIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSS 85 (141)
Q Consensus 15 ~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~ 85 (141)
.|+||.++.... .....+++.|++++|+.......++...+.. ..+|.-...+.+.+++ +.+++|+..+.
T Consensus 2 ~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~d-~~~~~~~~~~~~~~l~~~~v~~iig~~~s~ 80 (346)
T 1usg_A 2 DIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYD-DACDPKQAVAVANKIVNDGIKYVIGHLCSS 80 (346)
T ss_dssp CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEE-CTTCHHHHHHHHHHHHHTTCCEEECCSSHH
T ss_pred cEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeC-CCCCHHHHHHHHHHHHhCCCCEEEcCCCcH
Confidence 588999998643 2456789999999998643333344433322 2245444555555554 46678876543
No 24
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=83.59 E-value=2.3 Score=32.98 Aligned_cols=71 Identities=8% Similarity=0.054 Sum_probs=44.0
Q ss_pred cccceeeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcc
Q psy2803 11 LVVHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLM 80 (141)
Q Consensus 11 ~~p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~ 80 (141)
+.+.+++||.+..-.. .....+++.|++++|. . ...++...+.. ..+|.-.+.+.+++++ +.+++|
T Consensus 12 ~~~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~-i--~G~~i~l~~~D-~~~~~~~~~~~~~~l~~~~~v~~iiG 87 (366)
T 3td9_A 12 HMRKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT-V--LGEEVELVLLD-TRSEKTEAANAAARAIDKEKVLAIIG 87 (366)
T ss_dssp ----CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE-E--TTEEEEEEEEE-CTTCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred hhcceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh-c--CCeEEEEEEec-CCCCHHHHHHHHHHHhccCCeEEEEc
Confidence 3456789999998533 3467799999999997 1 12244443332 2356666666677766 567888
Q ss_pred cCCCC
Q psy2803 81 SLHSS 85 (141)
Q Consensus 81 ~~~~~ 85 (141)
+..+.
T Consensus 88 ~~~s~ 92 (366)
T 3td9_A 88 EVASA 92 (366)
T ss_dssp CSSHH
T ss_pred cCCch
Confidence 77654
No 25
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=82.89 E-value=2.7 Score=32.41 Aligned_cols=72 Identities=14% Similarity=0.028 Sum_probs=44.2
Q ss_pred cceeeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccC
Q psy2803 13 VHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSL 82 (141)
Q Consensus 13 p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~ 82 (141)
...|+||.|+.... .....+++.|++++|........++...+.. ..+|.-...+.+.+++ +.+++|+.
T Consensus 2 ~~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~G~~~~l~~~d-~~~~~~~~~~~~~~l~~~~~v~~iig~~ 80 (358)
T 3hut_A 2 SLALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYAD-SRDDADQARTIARAFVDDPRVVGVLGDF 80 (358)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEE-CTTCHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred CccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCCCeEEEEEEec-CCCCHHHHHHHHHHHhccCCcEEEEcCC
Confidence 35789999998632 3567899999999997643222233333322 2245555555566665 45678876
Q ss_pred CCC
Q psy2803 83 HSS 85 (141)
Q Consensus 83 ~~~ 85 (141)
.+.
T Consensus 81 ~s~ 83 (358)
T 3hut_A 81 SST 83 (358)
T ss_dssp SHH
T ss_pred CcH
Confidence 653
No 26
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=82.02 E-value=9.2 Score=29.90 Aligned_cols=68 Identities=9% Similarity=-0.108 Sum_probs=43.4
Q ss_pred ccceeeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcc
Q psy2803 12 VVHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLM 80 (141)
Q Consensus 12 ~p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~ 80 (141)
..+.|+||.++.... .....+++.|++++|........++...+.. +.+|.-...+.+++++ +.+++|
T Consensus 4 a~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~~i~l~~~D-~~~~~~~~~~~~~~li~~~~V~~iig 81 (392)
T 3lkb_A 4 GQQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVPGVVFNCVVRD-DQYNNANTQRFFEEAVDRFKIPVFLS 81 (392)
T ss_dssp CCEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSSTTEEEEEEEEE-CTTCHHHHHHHHHHHHHTTCCSCEEE
T ss_pred cCCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcCCeEeEEEEec-CCCCHHHHHHHHHHHHhhcCcEEEEe
Confidence 356899999998532 2467899999999998643323344444332 2345555556666665 456777
No 27
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=80.60 E-value=3.5 Score=32.49 Aligned_cols=67 Identities=6% Similarity=0.000 Sum_probs=40.7
Q ss_pred cceeeEeEEecCCC------hHHHHHHHHHHHHhhhcccC--cce--eEEEEEEeeCCCChhHHHHHHHHHH----HHHh
Q psy2803 13 VHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTT--RRF--ELQAYVDVINTADAFKLSRLSIRKM----LVTN 78 (141)
Q Consensus 13 p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l--~~f--~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~ 78 (141)
...|+||.+++... .....+++.|++++|..-.. ... ++...+.. +.+|.=.+.+.+.+++ +.++
T Consensus 2 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D-~~~~~~~a~~~~~~li~~~~V~~i 80 (391)
T 3eaf_A 2 SLTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRD-YAYNPTTAEEYYREFRDRYGVIAI 80 (391)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEE-CTTCHHHHHHHHHHHHHTTCCSEE
T ss_pred CccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeC-CCCCHHHHHHHHHHHHhhcCcEEE
Confidence 35799999998532 34677999999999986422 222 44444332 2234444444455554 4678
Q ss_pred cc
Q psy2803 79 LM 80 (141)
Q Consensus 79 ~~ 80 (141)
+|
T Consensus 81 iG 82 (391)
T 3eaf_A 81 IG 82 (391)
T ss_dssp EE
T ss_pred EE
Confidence 88
No 28
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=79.29 E-value=3.7 Score=31.60 Aligned_cols=70 Identities=11% Similarity=0.084 Sum_probs=43.8
Q ss_pred cceeeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccC
Q psy2803 13 VHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSL 82 (141)
Q Consensus 13 p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~ 82 (141)
...|+||.++.... .....+++.|++++|.. ....++...+.. +.+|.-.+.+.+.+++ +.+++|+.
T Consensus 4 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~~--i~G~~i~l~~~D-~~~~~~~~~~~~~~li~~~~v~~iiG~~ 80 (368)
T 4eyg_A 4 EDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGDT--VAGKKIEVILKD-DAAIPDNTKRLAQELIVNDKVNVIAGFG 80 (368)
T ss_dssp CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCSE--ETTEEEEEEEEE-CTTCHHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCCC--CCCeEEEEEEeC-CCCCHHHHHHHHHHHHhcCCcEEEECCC
Confidence 46799999998632 34677899999998852 122244444332 2245555555566655 45788877
Q ss_pred CCC
Q psy2803 83 HSS 85 (141)
Q Consensus 83 ~~~ 85 (141)
.+.
T Consensus 81 ~s~ 83 (368)
T 4eyg_A 81 ITP 83 (368)
T ss_dssp SHH
T ss_pred ccH
Confidence 654
No 29
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=78.21 E-value=2.9 Score=32.72 Aligned_cols=70 Identities=7% Similarity=-0.000 Sum_probs=42.6
Q ss_pred cceeeEeEEecCC-------ChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhccc
Q psy2803 13 VHHIGLGAIFEQG-------TDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMS 81 (141)
Q Consensus 13 p~~I~IGaIFd~~-------d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~ 81 (141)
.+.|+||.+++.. ......+++.|++++|..- ...++...+.. +.+|.-.+.+.+++++ +.+++|+
T Consensus 4 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i~ggi--~G~~i~l~~~D-~~~~~~~a~~~~~~li~~~~v~~iiG~ 80 (379)
T 3n0w_A 4 TGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDVGGKA--LGQPVKLVSAD-YQMKTDVALSIAREWFDRDGVDAIFDV 80 (379)
T ss_dssp --CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHTTTEE--TTEECEEEEEE-CTTCHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred CCcEEEEEEeCCccccccccCHHHHHHHHHHHHHhcCCC--CCeEEEEEEeC-CCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 4579999999742 1346789999999996432 12234433332 3345666666666665 4578887
Q ss_pred CCCC
Q psy2803 82 LHSS 85 (141)
Q Consensus 82 ~~~~ 85 (141)
..|.
T Consensus 81 ~~s~ 84 (379)
T 3n0w_A 81 VNSG 84 (379)
T ss_dssp CCHH
T ss_pred CCcH
Confidence 7654
No 30
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=77.91 E-value=5.1 Score=31.58 Aligned_cols=72 Identities=7% Similarity=-0.015 Sum_probs=40.9
Q ss_pred ccceeeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH-----HHHhcc
Q psy2803 12 VVHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM-----LVTNLM 80 (141)
Q Consensus 12 ~p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql-----~~a~~~ 80 (141)
..++|+||.++.-.- .....+++.|++++|..- ..-+++..+.. +.+..=..+....+.| +.+++|
T Consensus 2 ~Ad~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~nggi--~G~~ielv~~D-~~~~~p~~a~~~a~~Li~~d~V~aiiG 78 (371)
T 4f06_A 2 NADTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHGNKV--AGHTVEFVYRD-EVSPNPAQSKALAQELIVKEKVQYLAG 78 (371)
T ss_dssp --CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHCSEE--TTEEEEEEEEE-CCSSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhCCCC--CCEEEEEEEEc-CCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 457899999998532 345678999999988331 12234333321 1121234444445544 467888
Q ss_pred cCCCCC
Q psy2803 81 SLHSSP 86 (141)
Q Consensus 81 ~~~~~~ 86 (141)
++.|..
T Consensus 79 ~~~S~~ 84 (371)
T 4f06_A 79 LYFTPN 84 (371)
T ss_dssp CCSHHH
T ss_pred cccccc
Confidence 887654
No 31
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=75.31 E-value=4.8 Score=31.35 Aligned_cols=70 Identities=13% Similarity=0.035 Sum_probs=43.3
Q ss_pred cceeeEeEEecCC-------ChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhccc
Q psy2803 13 VHHIGLGAIFEQG-------TDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMS 81 (141)
Q Consensus 13 p~~I~IGaIFd~~-------d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~ 81 (141)
.+.|+||.+++.. ......+++.|++++|..- ...++...+.. +.+|.-.+.+.+++++ +.+++|+
T Consensus 2 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~~ggi--~G~~i~l~~~D-~~~~~~~a~~~~~~li~~~~v~~iiG~ 78 (375)
T 3i09_A 2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADFGGKV--NGKPIEVVYAD-HQNKADIAASKAREWMDRGGLDLLVGG 78 (375)
T ss_dssp CSSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHHTSEE--TTEEEEEEEEE-CTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CCCeEEEEEeCCCcccccccCHHHHHHHHHHHHHhCCCC--CCeEEEEEEec-CCCCHHHHHHHHHHHHhhCCCEEEECC
Confidence 3579999999741 1346789999999995331 22244433332 3345666666666665 3568887
Q ss_pred CCCC
Q psy2803 82 LHSS 85 (141)
Q Consensus 82 ~~~~ 85 (141)
..+.
T Consensus 79 ~~s~ 82 (375)
T 3i09_A 79 TNSA 82 (375)
T ss_dssp SCHH
T ss_pred CCcH
Confidence 6654
No 32
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=64.98 E-value=10 Score=29.68 Aligned_cols=71 Identities=8% Similarity=-0.021 Sum_probs=40.3
Q ss_pred cceeeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccC
Q psy2803 13 VHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSL 82 (141)
Q Consensus 13 p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~ 82 (141)
...++||.++.... .....+++.|++++|........++...+.. ..+|.-...+.+++++ +.+++|+.
T Consensus 5 ~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~G~~l~l~~~d-~~~~~~~~~~~~~~l~~~~~v~~iig~~ 83 (385)
T 1pea_A 5 QERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQD-PGGDPDRYRLCAEDFIRNRGVRFLVGCY 83 (385)
T ss_dssp ---CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBTTBCCEEEEEC-CTTCHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred CCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCCCeEEEEEEeC-CCCCHHHHHHHHHHHHhhCCcEEEECCC
Confidence 45688999997632 2456789999999997632222233333221 2234444455555555 35678876
Q ss_pred CC
Q psy2803 83 HS 84 (141)
Q Consensus 83 ~~ 84 (141)
.+
T Consensus 84 ~s 85 (385)
T 1pea_A 84 MS 85 (385)
T ss_dssp SH
T ss_pred ch
Confidence 54
No 33
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=53.97 E-value=12 Score=28.76 Aligned_cols=71 Identities=7% Similarity=0.098 Sum_probs=40.2
Q ss_pred ccceeeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhccc
Q psy2803 12 VVHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMS 81 (141)
Q Consensus 12 ~p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~ 81 (141)
....|+||.++.... .....+++.|++++|.. ....++...+.. ..+|.-...+.+.+++ +.+++|+
T Consensus 13 ~~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~ng~--~~g~~~~l~~~d-~~~~~~~~~~~~~~l~~~~~v~~iig~ 89 (375)
T 4evq_A 13 QAGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGK--LGGRSISFVKVD-DESAPPKATELTTKLIQSEKADVLIGT 89 (375)
T ss_dssp --CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTTTE--ETTEEEEEEEEE-CTTCHHHHHHHHHCCCCCSCCSEEEEC
T ss_pred hCCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhCCC--cCCEEEEEEEec-CCCCHHHHHHHHHHHHhcCCceEEEcC
Confidence 346799999998532 34677899999999832 222234333322 2234444444444443 4567776
Q ss_pred CCCC
Q psy2803 82 LHSS 85 (141)
Q Consensus 82 ~~~~ 85 (141)
..+.
T Consensus 90 ~~s~ 93 (375)
T 4evq_A 90 VHSG 93 (375)
T ss_dssp SSHH
T ss_pred CccH
Confidence 6543
No 34
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=44.89 E-value=8.9 Score=29.48 Aligned_cols=68 Identities=7% Similarity=-0.017 Sum_probs=38.6
Q ss_pred cccceeeEeEEecCCCh------HHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcc
Q psy2803 11 LVVHHIGLGAIFEQGTD------EVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLM 80 (141)
Q Consensus 11 ~~p~~I~IGaIFd~~d~------~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~ 80 (141)
.....|+||.++..... ....+++.|++++|. .++...+.. +.+|.-...+.+.+++ +.+++|
T Consensus 23 ~a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~G------~~i~l~~~d-~~~~~~~~~~~~~~l~~~~~v~~iig 95 (386)
T 3sg0_A 23 AAQAEIKIGITMSASGPGAALGQPQSKTVAALPKEIGG------EKVTYFALD-DESDPTKAAQNARKLLSEEKVDVLIG 95 (386)
T ss_dssp --CCCEEEEEEECCSSTTHHHHHHHHHHGGGSCSEETT------EEEEEEEEE-CTTCHHHHHHHHHHHHHTSCCSEEEC
T ss_pred cCCCceEEEEEeccCCchhhhcHHHHHHHHHHHHHcCC------EEEEEEEec-CCCCHHHHHHHHHHHHhhcCceEEEC
Confidence 34578999999985332 345566666666641 133333221 2345555566666665 467888
Q ss_pred cCCCC
Q psy2803 81 SLHSS 85 (141)
Q Consensus 81 ~~~~~ 85 (141)
+..+.
T Consensus 96 ~~~s~ 100 (386)
T 3sg0_A 96 SSLTP 100 (386)
T ss_dssp CSSHH
T ss_pred CCCch
Confidence 76654
No 35
>1roa_A Cystatin D; inhibitor of cysteine pepidases, protein binding; 1.80A {Homo sapiens} SCOP: d.17.1.2 PDB: 1rn7_A
Probab=40.07 E-value=58 Score=22.38 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=21.5
Q ss_pred eEeEEec--CCChHHHHHHHHHHHHhhhc-cc
Q psy2803 17 GLGAIFE--QGTDEVQSAFKFAMLTHNQN-TT 45 (141)
Q Consensus 17 ~IGaIFd--~~d~~~ElAFk~AI~~IN~~-k~ 45 (141)
..||.-+ .++.+.+.+-++|+..+|+. .+
T Consensus 10 ~~Gg~~~~~~~d~~v~~~a~~Av~~~N~~~s~ 41 (122)
T 1roa_A 10 LAGGIHATDLNDKSVQRALDFAISEYNKVINK 41 (122)
T ss_dssp --CCEEEECTTSHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCeECCCCCHHHHHHHHHHHHHHHhcccC
Confidence 4666543 56788899999999999987 54
No 36
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=38.03 E-value=11 Score=28.63 Aligned_cols=68 Identities=12% Similarity=0.026 Sum_probs=37.6
Q ss_pred cccceeeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcc
Q psy2803 11 LVVHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLM 80 (141)
Q Consensus 11 ~~p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~ 80 (141)
+....|+||.++.... .....+++.|++++|. .++...+.. ..+|.-...+.+.+++ +.+++|
T Consensus 3 aa~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~g------~~i~l~~~d-~~~~~~~~~~~~~~l~~~~~v~~iig 75 (362)
T 3snr_A 3 AETNEITVGISVTTTGPAAALGIPERNALEFVVKEISG------HPIKIIVLD-DGGDPTAATTNARRFVTESKADVIMG 75 (362)
T ss_dssp -CCCCEEEEEEECCSSTTHHHHHHHHHGGGGSCSEETT------EEEEEEEEE-CTTCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCeEEEEEecccCchhhcCHHHHHHHHHHHHHhCC------eEEEEEEec-CCCCHHHHHHHHHHHHhccCceEEEc
Confidence 3456899999998532 1244566666666641 133333221 2245555555556655 466788
Q ss_pred cCCCC
Q psy2803 81 SLHSS 85 (141)
Q Consensus 81 ~~~~~ 85 (141)
+..+.
T Consensus 76 ~~~s~ 80 (362)
T 3snr_A 76 SSVTP 80 (362)
T ss_dssp CSSHH
T ss_pred CCCcH
Confidence 76654
No 37
>2w9q_A Multicystatin; protease inhibitor, thiol protease inhibitor, hydrolase inhibitor; 2.50A {Solanum tuberosum} PDB: 2w9p_A
Probab=33.10 E-value=72 Score=20.67 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=18.4
Q ss_pred CCChHHHHHHHHHHHHhhhccc
Q psy2803 24 QGTDEVQSAFKFAMLTHNQNTT 45 (141)
Q Consensus 24 ~~d~~~ElAFk~AI~~IN~~k~ 45 (141)
.++++.+.+-++|+..+|+..+
T Consensus 8 ~~d~~v~~~~~fAv~~~n~~~n 29 (87)
T 2w9q_A 8 PNNTKFQELARFAIQDYNKKQN 29 (87)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHhhcC
Confidence 5678889999999999998653
No 38
>3gax_A Cystatin-C; cysteine protease inhibitor, 3D domain swapping, protein AGG amyloid, protein engineering, twinning; 1.70A {Homo sapiens} SCOP: d.17.1.2 PDB: 1g96_A 1tij_A 3qrd_A 3ps8_A 3nx0_A 3sva_A 3s67_A 1r4c_A
Probab=32.89 E-value=76 Score=21.81 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=20.8
Q ss_pred EeEEec--CCChHHHHHHHHHHHHhhhccc
Q psy2803 18 LGAIFE--QGTDEVQSAFKFAMLTHNQNTT 45 (141)
Q Consensus 18 IGaIFd--~~d~~~ElAFk~AI~~IN~~k~ 45 (141)
.||.-+ .++.+.+.+-++|+..+|+..+
T Consensus 10 ~Gg~~~~~~~d~~v~~~a~~av~~~N~~sn 39 (120)
T 3gax_A 10 VGGPMDASVEEEGVRRALDFAVGEYNKASN 39 (120)
T ss_dssp --CCEEECTTSHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCEeCCCCCHHHHHHHHHHHHHHHhccC
Confidence 566543 4678889999999999998754
No 39
>1yvb_I Cystatin; cysteine protease-inhibitor complex, hydrolase-hydrolase INH complex; 2.70A {Gallus gallus} SCOP: d.17.1.2 PDB: 1a67_A 1cew_I 1a90_A
Probab=31.52 E-value=57 Score=21.77 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=20.5
Q ss_pred eEEec--CCChHHHHHHHHHHHHhhhccc
Q psy2803 19 GAIFE--QGTDEVQSAFKFAMLTHNQNTT 45 (141)
Q Consensus 19 GaIFd--~~d~~~ElAFk~AI~~IN~~k~ 45 (141)
||.-+ .++.+.+.|-++|++.+|+..+
T Consensus 4 Gg~~~~~~~d~~v~~~~~~av~~~N~~s~ 32 (111)
T 1yvb_I 4 GAPVPVDENDEGLQRALQFAMAEYNRASN 32 (111)
T ss_dssp TCEECCCTTCHHHHHHHHHHHHHHHHHCC
T ss_pred CCceECCCCCHHHHHHHHHHHHHHHHhCC
Confidence 44443 4667889999999999998754
No 40
>2ch9_A Cystatin F; inhibitor, cysteine protease inhibitor, glycoprotein; HET: NAG FUL; 2.10A {Homo sapiens}
Probab=28.90 E-value=92 Score=21.96 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=21.8
Q ss_pred EeEEec--CCChHHHHHHHHHHHHhhhccc
Q psy2803 18 LGAIFE--QGTDEVQSAFKFAMLTHNQNTT 45 (141)
Q Consensus 18 IGaIFd--~~d~~~ElAFk~AI~~IN~~k~ 45 (141)
.||.-+ .++.+.+.|-++|++.+|+..+
T Consensus 17 ~Gg~~~~~~~d~ev~e~a~~Av~~~N~~sn 46 (131)
T 2ch9_A 17 PGFPKTIKTNDPGVLQAARYSVEKFNNCTN 46 (131)
T ss_dssp CCCCEECCTTCHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCeeCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 566543 4678889999999999998654
No 41
>3ima_B Cysteine proteinase inhibitor; cystatin, tarocystatin, cecpi, papain, phytocystatin, allergen, disulfide bond, hydrolase, protease; 2.03A {Colocasia esculenta} SCOP: d.17.1.0
Probab=25.57 E-value=39 Score=22.49 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=20.8
Q ss_pred EeEEecC----CChHHHHHHHHHHHHhhhccc
Q psy2803 18 LGAIFEQ----GTDEVQSAFKFAMLTHNQNTT 45 (141)
Q Consensus 18 IGaIFd~----~d~~~ElAFk~AI~~IN~~k~ 45 (141)
.||+-+. ++++.+.+-++|+..+|+..+
T Consensus 3 ~GG~~~~~~~~~d~~v~~~a~fav~~~n~~~n 34 (91)
T 3ima_B 3 MGGIVDVEGAQNSAEVEELARFAVDEHNKKEN 34 (91)
T ss_dssp BTCEEC------CHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccCcCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 4666653 578889999999999998643
No 42
>3ul5_A Canecystatin-1; defense, hydrolase inhibitor; 2.30A {Saccharum officinarum} PDB: 3ul6_A*
Probab=22.15 E-value=1.1e+02 Score=22.63 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=17.8
Q ss_pred eEeEEecC-----CChHHHHHHHHHHHHhhhccc
Q psy2803 17 GLGAIFEQ-----GTDEVQSAFKFAMLTHNQNTT 45 (141)
Q Consensus 17 ~IGaIFd~-----~d~~~ElAFk~AI~~IN~~k~ 45 (141)
..||+-+. ++.+++.+-++|+..+|+..+
T Consensus 45 ~~GG~~~i~~~~~ndpeVqela~fAV~e~Nkksn 78 (139)
T 3ul5_A 45 MVGDVRDAPAGHENDLEAIELARFAVAEHNSKTN 78 (139)
T ss_dssp -----------CTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCcccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 36887765 578889999999999998643
Done!