RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2803
         (141 letters)



>d1cjwa_ d.108.1.1 (A:) Serotonin N-acetyltranferase {Sheep (Ovis
           aries) [TaxId: 9940]}
          Length = 166

 Score = 25.7 bits (55), Expect = 2.0
 Identities = 7/29 (24%), Positives = 9/29 (31%)

Query: 71  IRKMLVTNLMSLHSSPNLINFMTRLGFEP 99
           +          L     L+ F  R GF P
Sbjct: 118 VGAQPAVRRAVLMCEDALVPFYQRFGFHP 146


>d2cy2a1 d.108.1.1 (A:1-174) Probable acetyltransferase TTHA1209
           {Thermus thermophilus [TaxId: 274]}
          Length = 174

 Score = 25.3 bits (54), Expect = 2.4
 Identities = 12/57 (21%), Positives = 15/57 (26%), Gaps = 3/57 (5%)

Query: 66  LSRLSIRKMLVTNLMSLHSSPNLINFMTRLGFEP---KFTESFGVFCPEPQSKFDLS 119
              L         +  L  +P    F   LG      +  E  G    E    FDL 
Sbjct: 114 ARLLQAEGYGRMLVWVLKENPKGRGFYEHLGGVLLGEREIELGGAKLWEVAYGFDLG 170


>d1y7ra1 d.108.1.1 (A:1-133) Hypothetical protein SA2161
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 133

 Score = 25.1 bits (54), Expect = 2.4
 Identities = 7/29 (24%), Positives = 13/29 (44%)

Query: 80  MSLHSSPNLINFMTRLGFEPKFTESFGVF 108
           +SL +         + GF P   +S G++
Sbjct: 102 VSLIADYPADKLYVKFGFMPTEPDSGGMY 130


>d1i12a_ d.108.1.1 (A:) Glucosamine-phosphate N-acetyltransferase
           GNA1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 157

 Score = 24.2 bits (51), Expect = 5.3
 Identities = 5/24 (20%), Positives = 8/24 (33%)

Query: 80  MSLHSSPNLINFMTRLGFEPKFTE 103
           + L      + F  + GF     E
Sbjct: 129 IILDCDEKNVKFYEKCGFSNAGVE 152


>d1roaa_ d.17.1.2 (A:) Cystatin D {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 111

 Score = 23.8 bits (51), Expect = 6.2
 Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 2/33 (6%)

Query: 19 GAIFEQGTD--EVQSAFKFAMLTHNQNTTTRRF 49
          G I     +   VQ A  FA+  +N+      +
Sbjct: 1  GGIHATDLNDKSVQRALDFAISEYNKVINKDEY 33


>d2bi0a2 d.38.1.4 (A:186-337) Hypothetical protein Rv0216/MT0226
          {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 152

 Score = 23.8 bits (51), Expect = 8.0
 Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 14/80 (17%)

Query: 19 GAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKMLVTN 78
          GA+     D V  A + A LT N            + D           R  +       
Sbjct: 25 GAVLHSTADLVSGAPELARLTLNIA--------ATHHD----WRVSG--RRLVYGGHTIG 70

Query: 79 LMSLHSSPNLINFMTRLGFE 98
          L    ++  L N  T L +E
Sbjct: 71 LALAQATRLLPNLATVLDWE 90


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0661    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 457,980
Number of extensions: 18040
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 11
Length of query: 141
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 64
Effective length of database: 1,350,386
Effective search space: 86424704
Effective search space used: 86424704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (22.4 bits)