Query psy2804
Match_columns 94
No_of_seqs 115 out of 532
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 17:22:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1054|consensus 99.8 3.9E-19 8.5E-24 140.2 3.5 83 2-84 754-849 (897)
2 KOG1052|consensus 99.3 4.2E-12 9.1E-17 101.0 5.6 80 8-90 552-634 (656)
3 KOG1053|consensus 99.1 1.2E-10 2.6E-15 95.7 4.5 66 9-76 787-852 (1258)
4 KOG4440|consensus 99.0 6.5E-12 1.4E-16 100.3 -5.0 79 7-86 784-863 (993)
5 PF00060 Lig_chan: Ligand-gate 95.7 0.0026 5.5E-08 41.2 -0.2 32 30-61 116-148 (148)
6 PF13373 DUF2407_C: DUF2407 C- 88.8 2 4.4E-05 28.8 5.8 71 18-88 46-126 (140)
7 PF12273 RCR: Chitin synthesis 87.9 0.66 1.4E-05 30.2 3.0 25 58-82 5-29 (130)
8 COG4846 CcdC Membrane protein 81.7 2.2 4.8E-05 28.8 3.3 44 42-85 115-158 (163)
9 PF06305 DUF1049: Protein of u 63.6 11 0.00023 21.4 2.8 21 54-74 25-45 (68)
10 PRK14780 lipoprotein signal pe 59.0 15 0.00033 27.2 3.5 43 47-91 199-243 (263)
11 PF06679 DUF1180: Protein of u 56.8 18 0.00039 24.9 3.4 26 49-74 93-118 (163)
12 PF04971 Lysis_S: Lysis protei 56.6 16 0.00035 21.7 2.8 29 54-82 35-63 (68)
13 PF05545 FixQ: Cbb3-type cytoc 55.5 13 0.00028 20.0 2.2 31 48-78 4-34 (49)
14 PF11189 DUF2973: Protein of u 55.3 36 0.00078 19.8 4.1 16 79-94 37-52 (65)
15 PF06645 SPC12: Microsomal sig 55.0 5.7 0.00012 23.8 0.7 33 47-79 31-63 (76)
16 PF07204 Orthoreo_P10: Orthore 54.9 5.6 0.00012 25.2 0.6 42 50-91 39-81 (98)
17 PF12273 RCR: Chitin synthesis 52.6 21 0.00046 23.1 3.1 25 53-77 4-28 (130)
18 PF09919 DUF2149: Uncharacteri 50.7 14 0.00031 23.0 2.0 25 46-70 3-27 (92)
19 PTZ00382 Variant-specific surf 50.3 9.1 0.0002 23.9 1.1 14 42-55 60-73 (96)
20 KOG4026|consensus 49.8 43 0.00094 24.0 4.5 47 41-87 149-195 (207)
21 PF14981 FAM165: FAM165 family 49.7 25 0.00054 19.4 2.6 33 47-79 3-35 (51)
22 TIGR03141 cytochro_ccmD heme e 48.5 34 0.00073 18.2 3.0 27 52-78 5-31 (45)
23 PRK08156 type III secretion sy 48.1 28 0.0006 26.8 3.6 34 54-87 179-212 (361)
24 PF15102 TMEM154: TMEM154 prot 47.2 14 0.00029 25.1 1.6 22 53-74 58-79 (146)
25 PF07301 DUF1453: Protein of u 46.7 21 0.00046 24.2 2.5 28 43-70 115-142 (148)
26 PF11190 DUF2976: Protein of u 46.6 44 0.00096 20.6 3.7 34 53-86 26-59 (87)
27 PRK12721 secretion system appa 45.8 32 0.00069 26.3 3.6 36 52-87 182-217 (349)
28 PRK05702 flhB flagellar biosyn 45.8 32 0.0007 26.4 3.6 35 53-87 190-224 (359)
29 PF11346 DUF3149: Protein of u 44.8 50 0.0011 17.7 3.6 30 47-76 7-36 (42)
30 PF04995 CcmD: Heme exporter p 44.4 43 0.00093 17.8 3.1 25 52-76 4-28 (46)
31 PRK12468 flhB flagellar biosyn 44.0 35 0.00076 26.5 3.6 33 55-87 192-224 (386)
32 PRK13109 flhB flagellar biosyn 43.8 36 0.00077 26.2 3.6 33 55-87 194-226 (358)
33 TIGR00328 flhB flagellar biosy 43.6 37 0.00079 26.0 3.6 35 53-87 183-217 (347)
34 PRK09108 type III secretion sy 43.4 37 0.00079 26.0 3.6 37 51-87 183-219 (353)
35 TIGR01404 FlhB_rel_III type II 43.1 38 0.00082 25.8 3.6 36 52-87 181-216 (342)
36 PRK09459 pspG phage shock prot 42.9 61 0.0013 19.6 3.8 13 67-79 54-66 (76)
37 PRK13415 flagella biosynthesis 41.5 70 0.0015 23.1 4.6 50 25-76 34-92 (219)
38 PRK13718 conjugal transfer pro 41.3 53 0.0011 20.1 3.4 31 49-79 43-73 (84)
39 PF07406 NICE-3: NICE-3 protei 40.5 25 0.00054 24.6 2.1 27 47-73 5-31 (186)
40 PF04184 ST7: ST7 protein; In 40.0 19 0.0004 29.3 1.6 42 46-87 39-83 (539)
41 KOG3488|consensus 39.9 30 0.00064 20.9 2.1 24 44-67 49-72 (81)
42 PRK06298 type III secretion sy 38.7 48 0.001 25.4 3.6 33 55-87 186-218 (356)
43 PF15345 TMEM51: Transmembrane 38.3 47 0.001 24.2 3.3 36 43-78 51-86 (233)
44 PF14851 FAM176: FAM176 family 38.1 31 0.00068 23.5 2.3 29 51-79 22-52 (153)
45 PF05393 Hum_adeno_E3A: Human 37.9 86 0.0019 19.6 4.0 28 55-83 37-64 (94)
46 PF08693 SKG6: Transmembrane a 37.8 14 0.0003 19.7 0.4 21 56-76 18-38 (40)
47 KOG3807|consensus 37.8 18 0.0004 28.4 1.2 46 43-88 51-99 (556)
48 PHA03099 epidermal growth fact 37.7 27 0.00058 23.4 1.8 26 53-78 105-130 (139)
49 PF03381 CDC50: LEM3 (ligand-e 36.5 46 0.00099 24.5 3.1 24 51-74 246-269 (278)
50 PF10582 Connexin_CCC: Gap jun 36.3 80 0.0017 18.5 3.6 23 52-74 43-66 (67)
51 PF10821 DUF2567: Protein of u 36.2 64 0.0014 22.3 3.6 30 50-79 45-74 (167)
52 PRK14766 lipoprotein signal pe 35.9 34 0.00073 24.3 2.2 20 47-66 156-175 (201)
53 PF12669 P12: Virus attachment 35.9 53 0.0012 18.5 2.7 8 71-78 18-25 (58)
54 PF01102 Glycophorin_A: Glycop 35.7 82 0.0018 20.6 3.9 26 57-82 69-94 (122)
55 PF11712 Vma12: Endoplasmic re 35.2 51 0.0011 21.6 2.9 19 58-76 114-132 (142)
56 PF06365 CD34_antigen: CD34/Po 35.0 48 0.001 23.6 2.9 28 52-79 100-130 (202)
57 PF05337 CSF-1: Macrophage col 33.6 14 0.0003 27.7 0.0 40 44-83 218-257 (285)
58 PHA03164 hypothetical protein; 33.5 70 0.0015 19.5 3.0 23 51-74 57-79 (88)
59 PRK06073 NADH dehydrogenase su 33.4 72 0.0016 20.8 3.4 42 47-89 4-45 (124)
60 PRK15035 cytochrome bd-II oxid 33.3 39 0.00085 27.4 2.5 30 53-82 19-48 (514)
61 TIGR02285 conserved hypothetic 33.2 14 0.00031 26.0 -0.0 21 9-29 242-262 (268)
62 PF00558 Vpu: Vpu protein; In 32.6 77 0.0017 19.4 3.2 24 57-82 12-35 (81)
63 PF15330 SIT: SHP2-interacting 32.5 1.1E+02 0.0024 19.5 4.0 25 52-76 2-26 (107)
64 PF09451 ATG27: Autophagy-rela 32.0 1.1E+02 0.0024 22.2 4.5 31 48-78 197-227 (268)
65 PF10624 TraS: Plasmid conjuga 31.9 93 0.002 21.1 3.7 32 53-84 29-60 (164)
66 PRK10797 glutamate and asparta 31.2 21 0.00046 26.0 0.6 21 9-29 252-272 (302)
67 PF07213 DAP10: DAP10 membrane 31.1 79 0.0017 19.3 3.0 33 44-79 30-62 (79)
68 PF14979 TMEM52: Transmembrane 30.5 1.3E+02 0.0029 20.5 4.3 29 50-78 22-50 (154)
69 PF01299 Lamp: Lysosome-associ 29.7 42 0.00091 24.8 2.0 20 55-74 273-292 (306)
70 MTH00030 ND3 NADH dehydrogenas 29.7 1E+02 0.0022 20.1 3.6 29 49-77 4-32 (123)
71 PF15179 Myc_target_1: Myc tar 29.4 95 0.0021 22.0 3.6 31 44-74 15-46 (197)
72 COG3115 ZipA Cell division pro 29.2 77 0.0017 24.2 3.3 28 53-80 4-31 (324)
73 COG1377 FlhB Flagellar biosynt 28.6 88 0.0019 24.3 3.6 31 56-86 193-223 (363)
74 COG4023 SBH1 Preprotein transl 28.1 81 0.0018 18.0 2.5 20 55-74 36-55 (57)
75 PF01054 MMTV_SAg: Mouse mamma 27.8 1.1E+02 0.0024 22.6 3.8 59 19-79 1-72 (313)
76 PRK15097 cytochrome d terminal 27.5 56 0.0012 26.6 2.5 29 53-81 19-47 (522)
77 PRK12773 flhB flagellar biosyn 27.5 90 0.0019 26.1 3.6 35 53-87 481-515 (646)
78 COG3340 PepE Peptidase E [Amin 27.1 21 0.00046 25.8 0.0 26 4-29 92-118 (224)
79 TIGR03745 conj_TIGR03745 integ 26.9 1.1E+02 0.0024 19.6 3.3 34 53-86 42-75 (104)
80 PF04277 OAD_gamma: Oxaloaceta 26.8 1.4E+02 0.0029 17.2 4.3 23 52-74 11-33 (79)
81 COG5035 CDC50 Cell cycle contr 26.6 1.1E+02 0.0024 23.6 3.7 36 51-86 333-368 (372)
82 COG4744 Uncharacterized conser 26.4 80 0.0017 20.6 2.6 27 42-68 20-46 (121)
83 COG1271 CydA Cytochrome bd-typ 26.1 56 0.0012 26.1 2.2 31 53-83 19-49 (457)
84 PF11359 gpUL132: Glycoprotein 25.9 73 0.0016 23.1 2.6 32 48-79 49-80 (235)
85 PF05568 ASFV_J13L: African sw 25.8 1.1E+02 0.0024 21.0 3.3 6 31-36 15-20 (189)
86 KOG4783|consensus 25.7 1.8E+02 0.004 18.4 4.3 26 54-79 66-91 (102)
87 TIGR03063 srtB_target sortase 25.5 88 0.0019 15.4 2.1 13 51-63 10-22 (29)
88 MTH00092 ND3 NADH dehydrogenas 25.4 1.6E+02 0.0034 18.7 3.8 34 55-89 6-39 (111)
89 PRK06602 NADH:ubiquinone oxido 25.4 1.3E+02 0.0027 19.3 3.5 37 51-88 9-45 (121)
90 PF12191 stn_TNFRSF12A: Tumour 25.4 23 0.00051 23.5 -0.0 20 50-69 75-94 (129)
91 KOG4564|consensus 24.8 80 0.0017 25.4 2.9 50 27-76 121-173 (473)
92 CHL00022 ndhC NADH dehydrogena 24.7 1.4E+02 0.0029 19.2 3.5 37 52-89 9-45 (120)
93 MTH00203 ND3 NADH dehydrogenas 24.5 1.7E+02 0.0038 18.4 4.0 34 54-88 5-38 (112)
94 PRK12772 bifunctional flagella 24.5 1.1E+02 0.0024 25.2 3.6 34 54-87 447-480 (609)
95 PF04483 DUF565: Protein of un 24.4 72 0.0016 18.1 1.9 16 61-76 8-23 (60)
96 PRK12659 putative monovalent c 24.4 1.5E+02 0.0033 19.0 3.7 34 50-83 72-105 (117)
97 PF08114 PMP1_2: ATPase proteo 23.6 74 0.0016 17.1 1.7 13 67-79 23-35 (43)
98 PF01307 Plant_vir_prot: Plant 23.5 93 0.002 19.7 2.5 23 49-71 6-28 (104)
99 PHA02680 ORF090 IMV phosphoryl 23.4 1E+02 0.0022 19.2 2.6 25 49-73 10-34 (91)
100 KOG3491|consensus 23.1 1E+02 0.0022 17.9 2.3 18 50-67 41-58 (65)
101 KOG1631|consensus 23.0 1.4E+02 0.0031 21.9 3.7 35 41-77 176-210 (261)
102 PRK11260 cystine transporter s 22.8 35 0.00077 23.9 0.5 19 11-29 244-262 (266)
103 PF01151 ELO: GNS1/SUR4 family 22.7 1.6E+02 0.0034 21.0 3.9 30 55-84 220-249 (250)
104 PF11027 DUF2615: Protein of u 22.7 2.2E+02 0.0047 18.2 4.5 21 51-71 53-73 (103)
105 PRK12660 putative monovalent c 22.6 1.8E+02 0.0038 18.6 3.7 36 47-82 66-101 (114)
106 PHA03170 UL37 tegument protein 22.5 61 0.0013 24.2 1.7 30 44-73 253-282 (293)
107 PRK07928 NADH dehydrogenase su 22.3 1.9E+02 0.004 18.6 3.8 31 57-88 11-41 (119)
108 KOG3653|consensus 22.3 2.6E+02 0.0056 22.9 5.2 35 48-82 149-186 (534)
109 PF15431 TMEM190: Transmembran 22.2 1.6E+02 0.0035 19.3 3.4 24 57-80 66-89 (134)
110 PRK09495 glnH glutamine ABC tr 22.0 36 0.00078 23.5 0.4 20 10-29 225-244 (247)
111 PF10355 Ytp1: Protein of unkn 21.6 1.1E+02 0.0023 22.8 2.8 51 43-93 25-80 (271)
112 PF10710 DUF2512: Protein of u 21.6 1.5E+02 0.0032 19.6 3.3 19 58-76 89-107 (136)
113 PF11446 DUF2897: Protein of u 21.5 1.3E+02 0.0027 17.0 2.5 17 53-69 7-23 (55)
114 COG2056 Predicted permease [Ge 21.4 1.2E+02 0.0026 24.0 3.1 40 41-81 181-220 (444)
115 PF05399 EVI2A: Ectropic viral 21.4 1.4E+02 0.003 21.7 3.2 17 56-72 130-146 (227)
116 PRK15010 ABC transporter lysin 21.3 40 0.00087 23.5 0.5 19 11-29 237-255 (260)
117 COG0713 NuoK NADH:ubiquinone o 21.2 2.1E+02 0.0045 18.2 3.7 31 50-80 60-90 (100)
118 PF08173 YbgT_YccB: Membrane b 21.2 1.2E+02 0.0027 14.8 3.5 21 57-77 6-26 (28)
119 PF11119 DUF2633: Protein of u 20.8 1.4E+02 0.0031 17.1 2.7 15 60-74 13-27 (59)
120 PRK04778 septation ring format 20.6 1.2E+02 0.0026 24.4 3.2 26 53-78 2-27 (569)
121 COG0635 HemN Coproporphyrinoge 20.6 30 0.00065 26.9 -0.2 25 2-26 92-117 (416)
122 PHA03231 glycoprotein BALF4; P 20.2 1.1E+02 0.0024 26.3 3.0 23 49-71 703-725 (829)
No 1
>KOG1054|consensus
Probab=99.75 E-value=3.9e-19 Score=140.19 Aligned_cols=83 Identities=49% Similarity=0.771 Sum_probs=74.3
Q ss_pred CcCCcccc-----------ccccccCCchhhHHHhhcCCCCCCCCCC--ccCccCcccccccchhHHHHHHHHHHHHHHH
Q psy2804 2 KFGGTVYF-----------GNPPNNAGELSRLQKKWWIDTSQCKSSK--SQDTHSELALSNVAGVFYILGAGLLLAMAVA 68 (94)
Q Consensus 2 ~~~~~~~~-----------~LkL~E~G~l~~L~~kW~~~~~~C~~~~--~~~~~~~L~l~~~~GvFiil~~g~~lal~i~ 68 (94)
-||+.||. +|+|+|.|.|++|++|||.+.|+|.... ..++++.|+++|++|+||||..|+++|++++
T Consensus 754 GYGiATp~Gsslr~~vNLAvLkL~E~G~LdKLkNKWWYDkGeC~sg~~ds~~ktsaLsLSnVAGvFYIL~gGl~laMlvA 833 (897)
T KOG1054|consen 754 GYGIATPKGSSLRNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYILVGGLGLAMLVA 833 (897)
T ss_pred ceeecCCCCcccccchhhhhhhhcccchHHHhhhhhcccccccCCCCCCCCcchhhcchhhccceeeeehhhHHHHHHHH
Confidence 48888884 6799999999999999999999998843 3345589999999999999999999999999
Q ss_pred HHHHHHHhhccccccc
Q psy2804 69 LVEFCYNTHMEASNNK 84 (94)
Q Consensus 69 i~e~~~~~~k~~~~~~ 84 (94)
++||+|+++.++++.+
T Consensus 834 LiEF~yksr~Eakr~k 849 (897)
T KOG1054|consen 834 LIEFCYKSRAEAKRMK 849 (897)
T ss_pred HHHHHHHhhHHHHhhh
Confidence 9999999999988877
No 2
>KOG1052|consensus
Probab=99.29 E-value=4.2e-12 Score=101.01 Aligned_cols=80 Identities=24% Similarity=0.456 Sum_probs=66.8
Q ss_pred ccccccccCCchhhHHHhhcCCC---CCCCCCCccCccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q psy2804 8 YFGNPPNNAGELSRLQKKWWIDT---SQCKSSKSQDTHSELALSNVAGVFYILGAGLLLAMAVALVEFCYNTHMEASNNK 84 (94)
Q Consensus 8 ~~~LkL~E~G~l~~L~~kW~~~~---~~C~~~~~~~~~~~L~l~~~~GvFiil~~g~~lal~i~i~e~~~~~~k~~~~~~ 84 (94)
.++|+++|.|.++++++|||... ..|+... +...|++++++|+|+++++|+++|++++++|++|++++...+++
T Consensus 552 ~~Il~l~e~g~l~~~~~kw~~~~~~~~~~~~~~---~~~~l~~~~~~g~F~i~~~g~~lal~vfi~E~~~~~~~~~~~~~ 628 (656)
T KOG1052|consen 552 RAILKLQETGILQKLKRKWFSKKPCLPKCSQTE---KTKALDLESFWGLFLILLVGYLLALLVFILELLYSRRRTLLRER 628 (656)
T ss_pred HHHHhhccccHHHHHHHHhccCCCCCCCCCCcc---cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 46889999999999999999864 3454433 46789999999999999999999999999999999988876666
Q ss_pred cccccc
Q psy2804 85 VSTIPN 90 (94)
Q Consensus 85 ~s~~~~ 90 (94)
...+.+
T Consensus 629 ~~~~~~ 634 (656)
T KOG1052|consen 629 LERVST 634 (656)
T ss_pred cccccc
Confidence 555443
No 3
>KOG1053|consensus
Probab=99.07 E-value=1.2e-10 Score=95.67 Aligned_cols=66 Identities=29% Similarity=0.413 Sum_probs=59.2
Q ss_pred cccccccCCchhhHHHhhcCCCCCCCCCCccCccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHh
Q psy2804 9 FGNPPNNAGELSRLQKKWWIDTSQCKSSKSQDTHSELALSNVAGVFYILGAGLLLAMAVALVEFCYNT 76 (94)
Q Consensus 9 ~~LkL~E~G~l~~L~~kW~~~~~~C~~~~~~~~~~~L~l~~~~GvFiil~~g~~lal~i~i~e~~~~~ 76 (94)
++|+...+|+|++|+++|.. +.|.++..+..+.+|+++||+|+|++|++|+++++++.++|+++.-
T Consensus 787 allQy~gdGeme~Le~~Wlt--gic~n~k~evmSsqLdIdnmaGvFymL~~amgLSllvfi~EHlvYw 852 (1258)
T KOG1053|consen 787 ALLQYLGDGEMEMLETLWLT--GICHNSKNEVMSSQLDIDNMAGVFYMLAVAMGLSLLVFIWEHLVYW 852 (1258)
T ss_pred HHHHHhccchHHHHHHHHhh--cccccchhhhhhcccChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999995 5788766666899999999999999999999999999999997643
No 4
>KOG4440|consensus
Probab=99.01 E-value=6.5e-12 Score=100.31 Aligned_cols=79 Identities=23% Similarity=0.423 Sum_probs=66.8
Q ss_pred cccccccccCCchhhHHHhhcCCCC-CCCCCCccCccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy2804 7 VYFGNPPNNAGELSRLQKKWWIDTS-QCKSSKSQDTHSELALSNVAGVFYILGAGLLLAMAVALVEFCYNTHMEASNNKV 85 (94)
Q Consensus 7 ~~~~LkL~E~G~l~~L~~kW~~~~~-~C~~~~~~~~~~~L~l~~~~GvFiil~~g~~lal~i~i~e~~~~~~k~~~~~~~ 85 (94)
|.++|++.|+|+|++|+++|....+ +|.+.. .+.+..|+++|++|+|++++.|++.++++.++|..|++++.+++.++
T Consensus 784 tlaIL~~hEsGfMEkLDk~Wi~~Ggpq~c~~~-~k~PatLgl~NMagvFiLV~~Gia~GifLifiEv~Ykrh~~~k~kr~ 862 (993)
T KOG4440|consen 784 TLAILKSHESGFMEKLDKTWIRYGGPQECDSR-SKAPATLGLENMAGVFILVAGGIAAGIFLIFIEVAYKRHKDAKRKRM 862 (993)
T ss_pred hHHHHHhhhcchHHHHHHHHHhcCCcchhhhh-ccCcccccccccccEEEEEecchhheeeEEEEeehhhhhhhhhhHHH
Confidence 5689999999999999999997533 333332 23688999999999999999999999999999999999988777665
Q ss_pred c
Q psy2804 86 S 86 (94)
Q Consensus 86 s 86 (94)
-
T Consensus 863 ~ 863 (993)
T KOG4440|consen 863 Q 863 (993)
T ss_pred H
Confidence 4
No 5
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=95.71 E-value=0.0026 Score=41.21 Aligned_cols=32 Identities=41% Similarity=0.662 Sum_probs=21.0
Q ss_pred CCCCCCCCc-cCccCcccccccchhHHHHHHHH
Q psy2804 30 TSQCKSSKS-QDTHSELALSNVAGVFYILGAGL 61 (94)
Q Consensus 30 ~~~C~~~~~-~~~~~~L~l~~~~GvFiil~~g~ 61 (94)
.+.|+..+. ..+..+|+++++.|+|+++++|+
T Consensus 116 ~~~c~~~~~~~~~~~~l~l~~~~g~F~il~~G~ 148 (148)
T PF00060_consen 116 KSECSSKEDDSNEPVPLTLDNLAGAFLILLIGL 148 (148)
T ss_dssp TSSSSHHHHSTT---S--SHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCCCCcccHHHHHHHHHHHHHhC
Confidence 346877432 34688999999999999999985
No 6
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=88.77 E-value=2 Score=28.76 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=44.4
Q ss_pred chhhHHHhhcCCCCCC---CCC-Cc---cCccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhc---ccccccccc
Q psy2804 18 ELSRLQKKWWIDTSQC---KSS-KS---QDTHSELALSNVAGVFYILGAGLLLAMAVALVEFCYNTHM---EASNNKVST 87 (94)
Q Consensus 18 ~l~~L~~kW~~~~~~C---~~~-~~---~~~~~~L~l~~~~GvFiil~~g~~lal~i~i~e~~~~~~k---~~~~~~~s~ 87 (94)
.+..||++|..+..+- ... .. ....+...-.+..+..--+..|+.++++..++-++|=.+. -+++.|+++
T Consensus 46 ~lR~LEe~Wmd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlL~G~liGff~g~~~~~~L~~~~~v~s~r~~~aI 125 (140)
T PF13373_consen 46 DLRQLEERWMDSGSNPAARAGGGGAGDNGDQFNSAVDASNSGHNDDLLWGLLIGFFFGLFSLFWLLREDGVFSKRQKMAI 125 (140)
T ss_pred HHHHHHHHHHhCCCcccccCCCCCCCCccccccccccccccchHHHHHHHHHHHHHHHHHhHHHHhhcccccccceeEee
Confidence 7889999999865331 100 00 0011111234566888889999999999999886654333 467777665
Q ss_pred c
Q psy2804 88 I 88 (94)
Q Consensus 88 ~ 88 (94)
.
T Consensus 126 ~ 126 (140)
T PF13373_consen 126 I 126 (140)
T ss_pred e
Confidence 4
No 7
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=87.90 E-value=0.66 Score=30.23 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccc
Q psy2804 58 GAGLLLAMAVALVEFCYNTHMEASN 82 (94)
Q Consensus 58 ~~g~~lal~i~i~e~~~~~~k~~~~ 82 (94)
++++++.++++++-+++.++|+.++
T Consensus 5 ~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444455555555555555444
No 8
>COG4846 CcdC Membrane protein involved in cytochrome C biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=81.69 E-value=2.2 Score=28.79 Aligned_cols=44 Identities=16% Similarity=0.359 Sum_probs=28.8
Q ss_pred cCcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy2804 42 HSELALSNVAGVFYILGAGLLLAMAVALVEFCYNTHMEASNNKV 85 (94)
Q Consensus 42 ~~~L~l~~~~GvFiil~~g~~lal~i~i~e~~~~~~k~~~~~~~ 85 (94)
+++++...++|+|.+++.|.++---++..--.-+..+...+.++
T Consensus 115 s~sid~geLsGMF~ilAf~MIvPWRiaMy~~Ykkl~kql~~~n~ 158 (163)
T COG4846 115 SGSIDVGELSGMFWILAFGMIVPWRIAMYFSYKKLEKQLGKVNV 158 (163)
T ss_pred cCCccHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 46788889999999999999887666543322222344444443
No 9
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=63.63 E-value=11 Score=21.36 Aligned_cols=21 Identities=19% Similarity=0.119 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy2804 54 FYILGAGLLLAMAVALVEFCY 74 (94)
Q Consensus 54 Fiil~~g~~lal~i~i~e~~~ 74 (94)
++.+++|.+++.++.....+-
T Consensus 25 l~~f~~G~llg~l~~~~~~~~ 45 (68)
T PF06305_consen 25 LIAFLLGALLGWLLSLPSRLR 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344666677777666666543
No 10
>PRK14780 lipoprotein signal peptidase; Provisional
Probab=58.98 E-value=15 Score=27.19 Aligned_cols=43 Identities=16% Similarity=0.437 Sum_probs=27.5
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHH--HHhhcccccccccccccc
Q psy2804 47 LSNVAGVFYILGAGLLLAMAVALVEFC--YNTHMEASNNKVSTIPNN 91 (94)
Q Consensus 47 l~~~~GvFiil~~g~~lal~i~i~e~~--~~~~k~~~~~~~s~~~~~ 91 (94)
+=|++-+++++++. +.++..+.+++ |++.+++...|.+...|.
T Consensus 199 iFNlADi~I~~G~~--llv~~~li~~~~~~~~~~~~~~~~~~~~~~~ 243 (263)
T PRK14780 199 IINLFDVYIVVGVC--VLVVILIISFIIKWKKDKDSEDNKKKIADEN 243 (263)
T ss_pred eeEHHHHHHHHHHH--HHHHHHHHHHHHhhcccccchhccCcccccc
Confidence 45777777776554 44444444454 677777887787777653
No 11
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=56.76 E-value=18 Score=24.89 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=17.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHH
Q psy2804 49 NVAGVFYILGAGLLLAMAVALVEFCY 74 (94)
Q Consensus 49 ~~~GvFiil~~g~~lal~i~i~e~~~ 74 (94)
-+.=.|||+++-+.++++.+++..+.
T Consensus 93 ~l~R~~~Vl~g~s~l~i~yfvir~~R 118 (163)
T PF06679_consen 93 MLKRALYVLVGLSALAILYFVIRTFR 118 (163)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34556777777777777777776554
No 12
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=56.61 E-value=16 Score=21.67 Aligned_cols=29 Identities=7% Similarity=0.193 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy2804 54 FYILGAGLLLAMAVALVEFCYNTHMEASN 82 (94)
Q Consensus 54 Fiil~~g~~lal~i~i~e~~~~~~k~~~~ 82 (94)
+|-+..|++++++..+..+.++.+++.|+
T Consensus 35 aIGvi~gi~~~~lt~ltN~YFK~k~drr~ 63 (68)
T PF04971_consen 35 AIGVIGGIFFGLLTYLTNLYFKIKEDRRK 63 (68)
T ss_pred hHHHHHHHHHHHHHHHhHhhhhhhHhhhH
Confidence 34456667777777777777766666444
No 13
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=55.52 E-value=13 Score=20.04 Aligned_cols=31 Identities=16% Similarity=0.378 Sum_probs=18.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2804 48 SNVAGVFYILGAGLLLAMAVALVEFCYNTHM 78 (94)
Q Consensus 48 ~~~~GvFiil~~g~~lal~i~i~e~~~~~~k 78 (94)
+.+.+....++......+++.++-+.|+.++
T Consensus 4 ~~~~~~~~~~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 4 ETLQGFARSIGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3445555555666666666666667665544
No 14
>PF11189 DUF2973: Protein of unknown function (DUF2973); InterPro: IPR021355 This entry is represented by Bacteriophage Syn9, Gp224. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently they have no known function.
Probab=55.34 E-value=36 Score=19.83 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=12.7
Q ss_pred ccccccccccccccCC
Q psy2804 79 EASNNKVSTIPNNIDG 94 (94)
Q Consensus 79 ~~~~~~~s~~~~~~~~ 94 (94)
..+..+.+.=.||+|+
T Consensus 37 ~~~~~~~t~HPELLD~ 52 (65)
T PF11189_consen 37 NDRTGKVTIHPELLDE 52 (65)
T ss_pred hhccCCCCCCcccCCC
Confidence 4577788889999985
No 15
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=55.01 E-value=5.7 Score=23.79 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=26.4
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2804 47 LSNVAGVFYILGAGLLLAMAVALVEFCYNTHME 79 (94)
Q Consensus 47 l~~~~GvFiil~~g~~lal~i~i~e~~~~~~k~ 79 (94)
.+|+.-.+++.++|+++++++.+=.+=+.+++.
T Consensus 31 ~q~~~~~~~~~~~g~~~~~lv~vP~Wp~y~r~p 63 (76)
T PF06645_consen 31 TQSFSYTFYIYGAGVVLTLLVVVPPWPFYNRHP 63 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHhheeCCcHhhcCCc
Confidence 367788899999999999999988876665554
No 16
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=54.92 E-value=5.6 Score=25.16 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=19.2
Q ss_pred cchhHHHHHH-HHHHHHHHHHHHHHHHhhcccccccccccccc
Q psy2804 50 VAGVFYILGA-GLLLAMAVALVEFCYNTHMEASNNKVSTIPNN 91 (94)
Q Consensus 50 ~~GvFiil~~-g~~lal~i~i~e~~~~~~k~~~~~~~s~~~~~ 91 (94)
.+..+++.+. |+++-+++..+-++.+.++.+...+.++..|+
T Consensus 39 ~ayWpyLA~GGG~iLilIii~Lv~CC~~K~K~~~~r~~~~reL 81 (98)
T PF07204_consen 39 VAYWPYLAAGGGLILILIIIALVCCCRAKHKTSAARNTFHREL 81 (98)
T ss_pred HhhhHHhhccchhhhHHHHHHHHHHhhhhhhhHhhhhHHHHHH
Confidence 3455555444 44444444444444444544444444444443
No 17
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=52.63 E-value=21 Score=23.06 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2804 53 VFYILGAGLLLAMAVALVEFCYNTH 77 (94)
Q Consensus 53 vFiil~~g~~lal~i~i~e~~~~~~ 77 (94)
+|+|+++.+++.+++.++.---+++
T Consensus 4 l~~iii~~i~l~~~~~~~~~rRR~r 28 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHNRRRRR 28 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444444444443333333
No 18
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=50.70 E-value=14 Score=22.97 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=20.0
Q ss_pred cccccchhHHHHHHHHHHHHHHHHH
Q psy2804 46 ALSNVAGVFYILGAGLLLAMAVALV 70 (94)
Q Consensus 46 ~l~~~~GvFiil~~g~~lal~i~i~ 70 (94)
++-|+--+++++++|+.++++...-
T Consensus 3 gvvNL~Dv~LVfav~llvalv~~~n 27 (92)
T PF09919_consen 3 GVVNLFDVMLVFAVGLLVALVMSWN 27 (92)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567888999999999998887643
No 19
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=50.33 E-value=9.1 Score=23.89 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=9.0
Q ss_pred cCcccccccchhHH
Q psy2804 42 HSELALSNVAGVFY 55 (94)
Q Consensus 42 ~~~L~l~~~~GvFi 55 (94)
.+.|+..-+.|+.+
T Consensus 60 ~~~ls~gaiagi~v 73 (96)
T PTZ00382 60 RSGLSTGAIAGISV 73 (96)
T ss_pred CCCcccccEEEEEe
Confidence 35677677777554
No 20
>KOG4026|consensus
Probab=49.80 E-value=43 Score=23.98 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=40.1
Q ss_pred ccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q psy2804 41 THSELALSNVAGVFYILGAGLLLAMAVALVEFCYNTHMEASNNKVST 87 (94)
Q Consensus 41 ~~~~L~l~~~~GvFiil~~g~~lal~i~i~e~~~~~~k~~~~~~~s~ 87 (94)
+.-.|+..+++=.|+.-.+|.+.++++..+-|....++..+....+.
T Consensus 149 ~ky~lG~CsIgWaY~lAIig~~daliL~~lsf~l~~k~~~~~p~~~~ 195 (207)
T KOG4026|consen 149 GKYYLGDCSIGWAYYLAIIGILDALILAFLSFVLGTKQQRLLPEESK 195 (207)
T ss_pred CCccCccccccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccchhh
Confidence 45689999999999999999999999999999988887766665544
No 21
>PF14981 FAM165: FAM165 family
Probab=49.70 E-value=25 Score=19.44 Aligned_cols=33 Identities=27% Similarity=0.232 Sum_probs=25.6
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2804 47 LSNVAGVFYILGAGLLLAMAVALVEFCYNTHME 79 (94)
Q Consensus 47 l~~~~GvFiil~~g~~lal~i~i~e~~~~~~k~ 79 (94)
++|+--+++|+++-..+-++-+..--+|++++.
T Consensus 3 L~~vPlLlYILaaKtlilClaFAgvK~yQ~krl 35 (51)
T PF14981_consen 3 LDNVPLLLYILAAKTLILCLAFAGVKMYQRKRL 35 (51)
T ss_pred hhhchHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 467777899999888887777777778876554
No 22
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=48.47 E-value=34 Score=18.24 Aligned_cols=27 Identities=11% Similarity=0.196 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2804 52 GVFYILGAGLLLAMAVALVEFCYNTHM 78 (94)
Q Consensus 52 GvFiil~~g~~lal~i~i~e~~~~~~k 78 (94)
|.|+-..-|+.+.+++.++-..+..++
T Consensus 5 ~~yVW~sYg~t~l~l~~li~~~~~~~r 31 (45)
T TIGR03141 5 AFYVWLAYGITALVLAGLILWSLLDRR 31 (45)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666665555554444443333
No 23
>PRK08156 type III secretion system protein SpaS; Validated
Probab=48.12 E-value=28 Score=26.83 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q psy2804 54 FYILGAGLLLAMAVALVEFCYNTHMEASNNKVST 87 (94)
Q Consensus 54 Fiil~~g~~lal~i~i~e~~~~~~k~~~~~~~s~ 87 (94)
+.++...+++-++++++++.|++++-.++-|+|-
T Consensus 179 ~~l~~~~~~~~lvia~~D~~~Qr~~~~k~lkMSk 212 (361)
T PRK08156 179 VKLVLTFLACALIVLILDFIAEYFLHMKDMKMDK 212 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 4455566677788999999999988877777774
No 24
>PF15102 TMEM154: TMEM154 protein family
Probab=47.16 E-value=14 Score=25.12 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy2804 53 VFYILGAGLLLAMAVALVEFCY 74 (94)
Q Consensus 53 vFiil~~g~~lal~i~i~e~~~ 74 (94)
+.+|+.-.+++++++.++-++.
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv 79 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLV 79 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHhe
Confidence 3333333355555555555543
No 25
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=46.67 E-value=21 Score=24.21 Aligned_cols=28 Identities=18% Similarity=0.596 Sum_probs=22.9
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHH
Q psy2804 43 SELALSNVAGVFYILGAGLLLAMAVALV 70 (94)
Q Consensus 43 ~~L~l~~~~GvFiil~~g~~lal~i~i~ 70 (94)
+.++..+.+|+|++++.|.++---++..
T Consensus 115 ~~i~~~~~~~mFf~lAfgmIvpWRiamy 142 (148)
T PF07301_consen 115 GSIDPGQLSGMFFLLAFGMIVPWRIAMY 142 (148)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999887665543
No 26
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=46.60 E-value=44 Score=20.63 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q psy2804 53 VFYILGAGLLLAMAVALVEFCYNTHMEASNNKVS 86 (94)
Q Consensus 53 vFiil~~g~~lal~i~i~e~~~~~~k~~~~~~~s 86 (94)
.+++++..+..+.++.+...++..+++.|..|.+
T Consensus 26 ~~~l~gLv~~a~afi~Va~~~i~~y~eir~gK~~ 59 (87)
T PF11190_consen 26 GVLLLGLVLAAAAFIVVAKAAISTYNEIRDGKKT 59 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 3445555556666777778888888888877654
No 27
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=45.83 E-value=32 Score=26.31 Aligned_cols=36 Identities=14% Similarity=0.309 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q psy2804 52 GVFYILGAGLLLAMAVALVEFCYNTHMEASNNKVST 87 (94)
Q Consensus 52 GvFiil~~g~~lal~i~i~e~~~~~~k~~~~~~~s~ 87 (94)
-++.++...+++.++++++++.|+.++-.++-|+|-
T Consensus 182 ~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMsk 217 (349)
T PRK12721 182 LIFWLWGGLLACYLVFGILDYSFQRYKIMKQLKMSK 217 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 344455666667788999999999888777777763
No 28
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=45.80 E-value=32 Score=26.40 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q psy2804 53 VFYILGAGLLLAMAVALVEFCYNTHMEASNNKVST 87 (94)
Q Consensus 53 vFiil~~g~~lal~i~i~e~~~~~~k~~~~~~~s~ 87 (94)
++.++...+++.++++++++.|+.++-.++-|+|-
T Consensus 190 ~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMsk 224 (359)
T PRK05702 190 VLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTK 224 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 34456666677788999999999888877777774
No 29
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=44.81 E-value=50 Score=17.66 Aligned_cols=30 Identities=10% Similarity=0.293 Sum_probs=17.9
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHh
Q psy2804 47 LSNVAGVFYILGAGLLLAMAVALVEFCYNT 76 (94)
Q Consensus 47 l~~~~GvFiil~~g~~lal~i~i~e~~~~~ 76 (94)
+.|--|+.-++++...+.+...+..++.++
T Consensus 7 F~s~vGL~Sl~vI~~~igm~~~~~~~F~~k 36 (42)
T PF11346_consen 7 FGSDVGLMSLIVIVFTIGMGVFFIRYFIRK 36 (42)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456666666666666666666655433
No 30
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=44.43 E-value=43 Score=17.84 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q psy2804 52 GVFYILGAGLLLAMAVALVEFCYNT 76 (94)
Q Consensus 52 GvFiil~~g~~lal~i~i~e~~~~~ 76 (94)
|.|+...-|+.+.+++.++-..+..
T Consensus 4 ~~yVW~sYg~t~~~l~~l~~~~~~~ 28 (46)
T PF04995_consen 4 GFYVWSSYGVTALVLAGLIVWSLRR 28 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566555555555555544444433
No 31
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=44.04 E-value=35 Score=26.51 Aligned_cols=33 Identities=6% Similarity=0.004 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q psy2804 55 YILGAGLLLAMAVALVEFCYNTHMEASNNKVST 87 (94)
Q Consensus 55 iil~~g~~lal~i~i~e~~~~~~k~~~~~~~s~ 87 (94)
.++...+++.+++++++++|++++-.++-|+|-
T Consensus 192 ~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSk 224 (386)
T PRK12468 192 FCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTK 224 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 345555566777899999999988877777774
No 32
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=43.84 E-value=36 Score=26.16 Aligned_cols=33 Identities=3% Similarity=0.143 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q psy2804 55 YILGAGLLLAMAVALVEFCYNTHMEASNNKVST 87 (94)
Q Consensus 55 iil~~g~~lal~i~i~e~~~~~~k~~~~~~~s~ 87 (94)
.++...+++.++++++++.|+.++-.++-|+|-
T Consensus 194 ~l~~~~~~~~~via~~D~~~q~~~~~k~lkMSk 226 (358)
T PRK13109 194 RLVSAVAIATIVLVALDLVWARFHWRRSLRMTK 226 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 345555666778899999999988877777774
No 33
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=43.60 E-value=37 Score=25.97 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q psy2804 53 VFYILGAGLLLAMAVALVEFCYNTHMEASNNKVST 87 (94)
Q Consensus 53 vFiil~~g~~lal~i~i~e~~~~~~k~~~~~~~s~ 87 (94)
++.++...+++.++++++++.|+.++-.++-|+|-
T Consensus 183 ~~~l~~~~~~~~~via~~D~~~qr~~~~k~lrMsk 217 (347)
T TIGR00328 183 AKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTK 217 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 34455566666788899999999888877777763
No 34
>PRK09108 type III secretion system protein HrcU; Validated
Probab=43.45 E-value=37 Score=26.04 Aligned_cols=37 Identities=11% Similarity=0.162 Sum_probs=27.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q psy2804 51 AGVFYILGAGLLLAMAVALVEFCYNTHMEASNNKVST 87 (94)
Q Consensus 51 ~GvFiil~~g~~lal~i~i~e~~~~~~k~~~~~~~s~ 87 (94)
..++.++...+++-++++++++.|+.++-.++-|+|-
T Consensus 183 ~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSk 219 (353)
T PRK09108 183 TVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSK 219 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 3344556666667788999999999988877777774
No 35
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=43.10 E-value=38 Score=25.80 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q psy2804 52 GVFYILGAGLLLAMAVALVEFCYNTHMEASNNKVST 87 (94)
Q Consensus 52 GvFiil~~g~~lal~i~i~e~~~~~~k~~~~~~~s~ 87 (94)
-++.++...+++.++++++++.|+.++-.++-|+|-
T Consensus 181 ~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMsk 216 (342)
T TIGR01404 181 LLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSK 216 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 344456666677778999999999888777777763
No 36
>PRK09459 pspG phage shock protein G; Reviewed
Probab=42.88 E-value=61 Score=19.62 Aligned_cols=13 Identities=8% Similarity=0.097 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhcc
Q psy2804 67 VALVEFCYNTHME 79 (94)
Q Consensus 67 i~i~e~~~~~~k~ 79 (94)
+.+.-++|++++.
T Consensus 54 ~~v~vW~~r~~~~ 66 (76)
T PRK09459 54 AVVVVWVIRAIKA 66 (76)
T ss_pred HHHHHHHHHHhhc
Confidence 4445566776554
No 37
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=41.55 E-value=70 Score=23.13 Aligned_cols=50 Identities=10% Similarity=0.168 Sum_probs=22.5
Q ss_pred hhcCCCCCCCCCCc---------cCccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHh
Q psy2804 25 KWWIDTSQCKSSKS---------QDTHSELALSNVAGVFYILGAGLLLAMAVALVEFCYNT 76 (94)
Q Consensus 25 kW~~~~~~C~~~~~---------~~~~~~L~l~~~~GvFiil~~g~~lal~i~i~e~~~~~ 76 (94)
-|+..+..|..... ...+.+.+..++.-++..| .+++++++++..|+-++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~qmi~aL--~~VI~Liy~l~rwL~rR 92 (219)
T PRK13415 34 ECLQHPDKCGKETPTGQQTQETAEAAASSVSAFDFVKLIGAT--LFVIFLIYALVKWLNKR 92 (219)
T ss_pred HHHhCcccccccCCccccccccccCCCCCccHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence 45655556755321 1123344444443333333 44455555555555443
No 38
>PRK13718 conjugal transfer protein TrbE; Provisional
Probab=41.27 E-value=53 Score=20.13 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=23.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2804 49 NVAGVFYILGAGLLLAMAVALVEFCYNTHME 79 (94)
Q Consensus 49 ~~~GvFiil~~g~~lal~i~i~e~~~~~~k~ 79 (94)
.+..+|+|+..|..+.+...++-.+-+.++.
T Consensus 43 ~l~a~~iI~~~gv~~~~ly~ffs~Ltkl~~~ 73 (84)
T PRK13718 43 MLAAVFVILYSGVLLFILYFFFSALTKLQKH 73 (84)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 4678888998998888888888777665544
No 39
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=40.49 E-value=25 Score=24.64 Aligned_cols=27 Identities=22% Similarity=0.118 Sum_probs=18.1
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHH
Q psy2804 47 LSNVAGVFYILGAGLLLAMAVALVEFC 73 (94)
Q Consensus 47 l~~~~GvFiil~~g~~lal~i~i~e~~ 73 (94)
.+.+.|+.+++.++.+.-.++.++-|.
T Consensus 5 ~~~lsGv~vvlv~a~g~l~~vllfIfa 31 (186)
T PF07406_consen 5 SEWLSGVNVVLVIAYGSLVFVLLFIFA 31 (186)
T ss_pred cccccceeeehhhHHHHHHHHHHHHHH
Confidence 345789988877776666666555554
No 40
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=40.01 E-value=19 Score=29.27 Aligned_cols=42 Identities=21% Similarity=0.346 Sum_probs=30.1
Q ss_pred cccccchhHHH--HHHHHHHHHHHHHHHHHHHhh-cccccccccc
Q psy2804 46 ALSNVAGVFYI--LGAGLLLAMAVALVEFCYNTH-MEASNNKVST 87 (94)
Q Consensus 46 ~l~~~~GvFii--l~~g~~lal~i~i~e~~~~~~-k~~~~~~~s~ 87 (94)
=++++.==|++ ++..+.++-+|.++|++|.++ -.+--+|+|+
T Consensus 39 f~~~ltpkfyvaltgtsslisg~i~ifEWwyF~kygtsfieqvs~ 83 (539)
T PF04184_consen 39 FLNTLTPKFYVALTGTSSLISGLILIFEWWYFRKYGTSFIEQVSV 83 (539)
T ss_pred HHhccCchheeeeccchHHHHHHHHHHHHHHHHhccchhhhhhcc
Confidence 34555666775 677788999999999999664 4556666665
No 41
>KOG3488|consensus
Probab=39.93 E-value=30 Score=20.85 Aligned_cols=24 Identities=17% Similarity=0.474 Sum_probs=18.6
Q ss_pred cccccccchhHHHHHHHHHHHHHH
Q psy2804 44 ELALSNVAGVFYILGAGLLLAMAV 67 (94)
Q Consensus 44 ~L~l~~~~GvFiil~~g~~lal~i 67 (94)
.+.+.-.+|+|.++.+|..++++.
T Consensus 49 Ai~iPvaagl~ll~lig~Fis~vM 72 (81)
T KOG3488|consen 49 AITIPVAAGLFLLCLIGTFISLVM 72 (81)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHh
Confidence 445556789999999998888765
No 42
>PRK06298 type III secretion system protein; Validated
Probab=38.65 E-value=48 Score=25.44 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q psy2804 55 YILGAGLLLAMAVALVEFCYNTHMEASNNKVST 87 (94)
Q Consensus 55 iil~~g~~lal~i~i~e~~~~~~k~~~~~~~s~ 87 (94)
.++...+++.++++++++.|+.++-.++-|+|-
T Consensus 186 ~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSk 218 (356)
T PRK06298 186 KAVTSIGIFFLVVAVLDLVYQRHNFAKELKMEK 218 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 344445567778899999999888777777763
No 43
>PF15345 TMEM51: Transmembrane protein 51
Probab=38.27 E-value=47 Score=24.23 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=24.2
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2804 43 SELALSNVAGVFYILGAGLLLAMAVALVEFCYNTHM 78 (94)
Q Consensus 43 ~~L~l~~~~GvFiil~~g~~lal~i~i~e~~~~~~k 78 (94)
..+.-..|.-.|+++++|+++-++-.+.-+.-++++
T Consensus 51 ~~~ksKt~SVAyVLVG~Gv~LLLLSICL~IR~KRr~ 86 (233)
T PF15345_consen 51 GNLKSKTFSVAYVLVGSGVALLLLSICLSIRDKRRR 86 (233)
T ss_pred CcccceeEEEEEehhhHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888887777666666555444433
No 44
>PF14851 FAM176: FAM176 family
Probab=38.14 E-value=31 Score=23.50 Aligned_cols=29 Identities=17% Similarity=0.467 Sum_probs=16.9
Q ss_pred chhHHHH--HHHHHHHHHHHHHHHHHHhhcc
Q psy2804 51 AGVFYIL--GAGLLLAMAVALVEFCYNTHME 79 (94)
Q Consensus 51 ~GvFiil--~~g~~lal~i~i~e~~~~~~k~ 79 (94)
.|+|+++ .+|+++.+.+.+....++.+++
T Consensus 22 ~aLYFv~gVC~GLlLtLcllV~risc~~r~~ 52 (153)
T PF14851_consen 22 FALYFVSGVCAGLLLTLCLLVIRISCRPRKR 52 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhheeecccc
Confidence 4666664 4566666666666666643433
No 45
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=37.88 E-value=86 Score=19.63 Aligned_cols=28 Identities=7% Similarity=0.415 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy2804 55 YILGAGLLLAMAVALVEFCYNTHMEASNN 83 (94)
Q Consensus 55 iil~~g~~lal~i~i~e~~~~~~k~~~~~ 83 (94)
+...+|+++-+++.-+ .++++|+++|+.
T Consensus 37 ~lvI~~iFil~Vilwf-vCC~kRkrsRrP 64 (94)
T PF05393_consen 37 FLVICGIFILLVILWF-VCCKKRKRSRRP 64 (94)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhhhccCC
Confidence 3344444443333333 345555555554
No 46
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=37.84 E-value=14 Score=19.71 Aligned_cols=21 Identities=19% Similarity=0.475 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy2804 56 ILGAGLLLAMAVALVEFCYNT 76 (94)
Q Consensus 56 il~~g~~lal~i~i~e~~~~~ 76 (94)
++-++.++.+++.++-++|++
T Consensus 18 vVPV~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 18 VVPVGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred EechHHHHHHHHHHhheEEec
Confidence 344444444444444444443
No 47
>KOG3807|consensus
Probab=37.84 E-value=18 Score=28.41 Aligned_cols=46 Identities=20% Similarity=0.331 Sum_probs=33.4
Q ss_pred CcccccccchhHHH--HHHHHHHHHHHHHHHHHHHhhc-cccccccccc
Q psy2804 43 SELALSNVAGVFYI--LGAGLLLAMAVALVEFCYNTHM-EASNNKVSTI 88 (94)
Q Consensus 43 ~~L~l~~~~GvFii--l~~g~~lal~i~i~e~~~~~~k-~~~~~~~s~~ 88 (94)
.++.++++.-=|++ .+..+.++-+|.++|++|.+++ .+--+|+|+-
T Consensus 51 vtmflntLTPKFYVALTGTSSLiSGlILIFEWWYF~k~gtsfieqvsv~ 99 (556)
T KOG3807|consen 51 VTMFLNTLTPKFYVALTGTSSLISGLILIFEWWYFHKHGTSFIEQVSVS 99 (556)
T ss_pred HHHHHhcCCcceEEEeecchHHHhhHHHHHHhHhhhccCcchhhhhhhh
Confidence 34556777777885 6777889999999999997654 4555566553
No 48
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=37.70 E-value=27 Score=23.42 Aligned_cols=26 Identities=8% Similarity=0.051 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2804 53 VFYILGAGLLLAMAVALVEFCYNTHM 78 (94)
Q Consensus 53 vFiil~~g~~lal~i~i~e~~~~~~k 78 (94)
+++++++|++++..++.+-.+|++++
T Consensus 105 ~il~il~~i~is~~~~~~yr~~r~~~ 130 (139)
T PHA03099 105 GIVLVLVGIIITCCLLSVYRFTRRTK 130 (139)
T ss_pred HHHHHHHHHHHHHHHHhhheeeeccc
Confidence 34444555555544444444444443
No 49
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=36.47 E-value=46 Score=24.51 Aligned_cols=24 Identities=13% Similarity=0.279 Sum_probs=12.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q psy2804 51 AGVFYILGAGLLLAMAVALVEFCY 74 (94)
Q Consensus 51 ~GvFiil~~g~~lal~i~i~e~~~ 74 (94)
+-+|+++++.+++..+++++..+.
T Consensus 246 gi~ylvvg~i~~v~~i~~~~~~~~ 269 (278)
T PF03381_consen 246 GIAYLVVGGICLVLAIIFLIIHYF 269 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555444
No 50
>PF10582 Connexin_CCC: Gap junction channel protein cysteine-rich domain; InterPro: IPR019570 The connexins are a family of integral membrane proteins that oligomerise to form intercellular channels that are clustered at gap junctions. These channels are specialised sites of cell-cell contact that allow the passage of ions, intracellular metabolites and messenger molecules (with molecular weight less than 1-2kDa) from the cytoplasm of one cell to its opposing neighbours. They are found in almost all vertebrate cell types, and somewhat similar proteins have been cloned from plant species. Invertebrates utilise a different family of molecules, innexins, that share a similar predicted secondary structure to the vertebrate connexins, but have no sequence identity to them []. Vertebrate gap junction channels are thought to participate in diverse biological functions. For instance, in the heart they permit the rapid cell-cell transfer of action potentials, ensuring coordinated contraction of the cardiomyocytes. They are also responsible for neurotransmission at specialised 'electrical' synapses. In non-excitable tissues, such as the liver, they may allow metabolic cooperation between cells. In the brain, glial cells are extensively-coupled by gap junctions; this allows waves of intracellular Ca2+ to propagate through nervous tissue, and may contribute to their ability to spatially-buffer local changes in extracellular K+ concentration []. The connexin protein family is encoded by at least 13 genes in rodents, with many homologues cloned from other species. They show overlapping tissue expression patterns, most tissues expressing more than one connexin type. Their conductances, permeability to different molecules, phosphorylation and voltage-dependence of their gating, have been found to vary. Possible communication diversity is increased further by the fact that gap junctions may be formed by the association of different connexin isoforms from apposing cells. However, in vitro studies have shown that not all possible combinations of connexins produce active channels [, ]. Hydropathy analysis predicts that all cloned connexins share a common transmembrane (TM) topology. Each connexin is thought to contain 4 TM domains, with two extracellular and three cytoplasmic regions. This model has been validated for several of the family members by in vitro biochemical analysis. Both N- and C-termini are thought to face the cytoplasm, and the third TM domain has an amphipathic character, suggesting that it contributes to the lining of the formed-channel. Amino acid sequence identity between the isoforms is ~50-80%, with the TM domains being well conserved. Both extracellular loops contain characteristically conserved cysteine residues, which likely form intramolecular disulphide bonds. By contrast, the single putative intracellular loop (between TM domains 2 and 3) and the cytoplasmic C terminus are highly variable among the family members. Six connexins are thought to associate to form a hemi-channel, or connexon. Two connexons then interact (likely via the extracellular loops of their connexins) to form the complete gap junction channel. NH2-*** *** *************-COOH ** ** ** ** ** ** ** ** Cytoplasmic ---**----**-----**----**---------------- ** ** ** ** Membrane ** ** ** ** ---**----**-----**----**---------------- ** ** ** ** Extracellular ** ** ** ** ** ** Two sets of nomenclature have been used to identify the connexins. The first, and most commonly used, classifies the connexin molecules according to molecular weight, such as connexin43 (abbreviated to Cx43), indicating a connexin of molecular weight close to 43kDa. However, studies have revealed cases where clear functional homologues exist across species that have quite different molecular masses; therefore, an alternative nomenclature was proposed based on evolutionary considerations, which divides the family into two major subclasses, alpha and beta, each with a number of members []. Due to their ubiquity and overlapping tissue distributions, it has proved difficult to elucidate the functions of individual connexin isoforms. To circumvent this problem, particular connexin-encoding genes have been subjected to targeted-disruption in mice, and the phenotype of the resulting animals investigated. Around half the connexin isoforms have been investigated in this manner []. Further insight into the functional roles of connexins has come from the discovery that a number of human diseases are caused by mutations in connexin genes. For instance, mutations in Cx32 give rise to a form of inherited peripheral neuropathy called X-linked dominant Charcot-Marie-Tooth disease []. Similarly, mutations in Cx26 are responsible for both autosomal recessive and dominant forms of nonsyndromic deafness, a disorder characterised by hearing loss, with no apparent effects on other organ systems. This entry represents the cysteine rich domain of the connexins.; PDB: 2ZW3_F.
Probab=36.32 E-value=80 Score=18.50 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=16.9
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHHH
Q psy2804 52 GVFYI-LGAGLLLAMAVALVEFCY 74 (94)
Q Consensus 52 GvFii-l~~g~~lal~i~i~e~~~ 74 (94)
=+|++ ..+...+++++.++|++|
T Consensus 43 tIfl~fM~~~s~vsi~L~l~El~~ 66 (67)
T PF10582_consen 43 TIFLIFMFAVSCVSILLNLAELFY 66 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34553 566677899999999875
No 51
>PF10821 DUF2567: Protein of unknown function (DUF2567); InterPro: IPR021213 This is a bacterial family of proteins with unknown function.
Probab=36.16 E-value=64 Score=22.33 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=25.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2804 50 VAGVFYILGAGLLLAMAVALVEFCYNTHME 79 (94)
Q Consensus 50 ~~GvFiil~~g~~lal~i~i~e~~~~~~k~ 79 (94)
|.+.+++++.++..+++..+.-+.++.+|-
T Consensus 45 F~a~a~f~~l~lv~Gvvaav~~W~~R~~RG 74 (167)
T PF10821_consen 45 FDADALFVLLGLVLGVVAAVAVWLWRRRRG 74 (167)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 888999999999999999999888876654
No 52
>PRK14766 lipoprotein signal peptidase; Provisional
Probab=35.86 E-value=34 Score=24.30 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=13.3
Q ss_pred ccccchhHHHHHHHHHHHHH
Q psy2804 47 LSNVAGVFYILGAGLLLAMA 66 (94)
Q Consensus 47 l~~~~GvFiil~~g~~lal~ 66 (94)
.=|++-+++.+++++++.++
T Consensus 156 iFNvADi~I~iG~~l~vi~l 175 (201)
T PRK14766 156 VFNLADLYVNIAIGLTILFT 175 (201)
T ss_pred EEEhHHHHHHHHHHHHHHHH
Confidence 45778888877766655333
No 53
>PF12669 P12: Virus attachment protein p12 family
Probab=35.86 E-value=53 Score=18.53 Aligned_cols=8 Identities=0% Similarity=-0.180 Sum_probs=3.8
Q ss_pred HHHHHhhc
Q psy2804 71 EFCYNTHM 78 (94)
Q Consensus 71 e~~~~~~k 78 (94)
..+|+.++
T Consensus 18 r~~~k~~K 25 (58)
T PF12669_consen 18 RKFIKDKK 25 (58)
T ss_pred HHHHHHhh
Confidence 55554433
No 54
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.71 E-value=82 Score=20.61 Aligned_cols=26 Identities=8% Similarity=0.103 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccc
Q psy2804 57 LGAGLLLAMAVALVEFCYNTHMEASN 82 (94)
Q Consensus 57 l~~g~~lal~i~i~e~~~~~~k~~~~ 82 (94)
..+|+..+++..++-..|-.+|..+|
T Consensus 69 Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 69 IIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444444333333444444433
No 55
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=35.18 E-value=51 Score=21.63 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy2804 58 GAGLLLAMAVALVEFCYNT 76 (94)
Q Consensus 58 ~~g~~lal~i~i~e~~~~~ 76 (94)
.+|++.+++++++|.....
T Consensus 114 llgl~~al~vlvAEv~l~~ 132 (142)
T PF11712_consen 114 LLGLFGALLVLVAEVVLYI 132 (142)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566667777777775443
No 56
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=35.03 E-value=48 Score=23.61 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=14.8
Q ss_pred hhHHH-HHHH--HHHHHHHHHHHHHHHhhcc
Q psy2804 52 GVFYI-LGAG--LLLAMAVALVEFCYNTHME 79 (94)
Q Consensus 52 GvFii-l~~g--~~lal~i~i~e~~~~~~k~ 79 (94)
++||. +..| +.+++++..+-++|++|..
T Consensus 100 ~~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs~ 130 (202)
T PF06365_consen 100 PTLIALVTSGSFLLLAILLGAGYCCHQRRSW 130 (202)
T ss_pred eEEEehHHhhHHHHHHHHHHHHHHhhhhccC
Confidence 36664 4455 5555555555566654443
No 57
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=33.56 E-value=14 Score=27.67 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=0.0
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy2804 44 ELALSNVAGVFYILGAGLLLAMAVALVEFCYNTHMEASNN 83 (94)
Q Consensus 44 ~L~l~~~~GvFiil~~g~~lal~i~i~e~~~~~~k~~~~~ 83 (94)
+-+.+.-+-||++|+-++++.++-.-.=.+|+.|++++++
T Consensus 218 ss~pq~p~~vf~lLVPSiILVLLaVGGLLfYr~rrRs~~e 257 (285)
T PF05337_consen 218 SSDPQLPGFVFYLLVPSIILVLLAVGGLLFYRRRRRSHRE 257 (285)
T ss_dssp ----------------------------------------
T ss_pred CCCCCCCcccccccccchhhhhhhccceeeeccccccccc
Confidence 3455556677887776666555544444455555555444
No 58
>PHA03164 hypothetical protein; Provisional
Probab=33.51 E-value=70 Score=19.54 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=14.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q psy2804 51 AGVFYILGAGLLLAMAVALVEFCY 74 (94)
Q Consensus 51 ~GvFiil~~g~~lal~i~i~e~~~ 74 (94)
.+.|++| .|+++|+++.++-.+|
T Consensus 57 tftFlvL-tgLaIamILfiifvly 79 (88)
T PHA03164 57 TFTFLVL-TGLAIAMILFIIFVLY 79 (88)
T ss_pred eeehHHH-HHHHHHHHHHHHHHHH
Confidence 4666655 4677777776666554
No 59
>PRK06073 NADH dehydrogenase subunit A; Validated
Probab=33.37 E-value=72 Score=20.85 Aligned_cols=42 Identities=12% Similarity=-0.004 Sum_probs=23.9
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Q psy2804 47 LSNVAGVFYILGAGLLLAMAVALVEFCYNTHMEASNNKVSTIP 89 (94)
Q Consensus 47 l~~~~GvFiil~~g~~lal~i~i~e~~~~~~k~~~~~~~s~~~ 89 (94)
+++...+++.+.+++++++.....-.+...++ ..++|.+-.|
T Consensus 4 ~~~~~~i~l~~~l~~~~~~~~l~l~~ll~p~~-~~~~K~~~YE 45 (124)
T PRK06073 4 MQAALAFGLVIVLGLAAGVGTYKLLKLILPSK-PTPLKVSRYE 45 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCcccCCccc
Confidence 34555666666666666666666655544433 3455555443
No 60
>PRK15035 cytochrome bd-II oxidase subunit 1; Provisional
Probab=33.31 E-value=39 Score=27.37 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy2804 53 VFYILGAGLLLAMAVALVEFCYNTHMEASN 82 (94)
Q Consensus 53 vFiil~~g~~lal~i~i~e~~~~~~k~~~~ 82 (94)
.|+....+++++++++++|.+|-+.++..-
T Consensus 19 H~lFvpltiGL~~~lai~E~~~~rtg~~~y 48 (514)
T PRK15035 19 HFLFVPLTLGLIFLLAIMETIYVVTGKTIY 48 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 466788888999999999999987666443
No 61
>TIGR02285 conserved hypothetical protein. Members of this family are found in several Proteobacteria, including Pseudomonas putida KT2440, Bdellovibrio bacteriovorus HD100 (three members), Aeromonas hydrophila, and Chromobacterium violaceum ATCC 12472. The function is unknown.
Probab=33.25 E-value=14 Score=26.03 Aligned_cols=21 Identities=10% Similarity=0.077 Sum_probs=17.7
Q ss_pred cccccccCCchhhHHHhhcCC
Q psy2804 9 FGNPPNNAGELSRLQKKWWID 29 (94)
Q Consensus 9 ~~LkL~E~G~l~~L~~kW~~~ 29 (94)
++.+|.++|++++|.+||+..
T Consensus 242 ~L~~l~~dG~~~~i~~k~~~~ 262 (268)
T TIGR02285 242 ALSELNVDPKYYKYFDRWLSP 262 (268)
T ss_pred HHHHHhhCHHHHHHHHHhCCH
Confidence 345789999999999999953
No 62
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=32.55 E-value=77 Score=19.37 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccc
Q psy2804 57 LGAGLLLAMAVALVEFCYNTHMEASN 82 (94)
Q Consensus 57 l~~g~~lal~i~i~e~~~~~~k~~~~ 82 (94)
+.+.+++++++..+ .|..+++-++
T Consensus 12 liv~~iiaIvvW~i--v~ieYrk~~r 35 (81)
T PF00558_consen 12 LIVALIIAIVVWTI--VYIEYRKIKR 35 (81)
T ss_dssp HHHHHHHHHHHHHH--H---------
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 34444444444433 3444444333
No 63
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=32.49 E-value=1.1e+02 Score=19.48 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q psy2804 52 GVFYILGAGLLLAMAVALVEFCYNT 76 (94)
Q Consensus 52 GvFiil~~g~~lal~i~i~e~~~~~ 76 (94)
++..++++-++++++..+.-+..++
T Consensus 2 ~Ll~il~llLll~l~asl~~wr~~~ 26 (107)
T PF15330_consen 2 LLLGILALLLLLSLAASLLAWRMKQ 26 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555666666655554443
No 64
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=31.98 E-value=1.1e+02 Score=22.21 Aligned_cols=31 Identities=26% Similarity=0.076 Sum_probs=16.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2804 48 SNVAGVFYILGAGLLLAMAVALVEFCYNTHM 78 (94)
Q Consensus 48 ~~~~GvFiil~~g~~lal~i~i~e~~~~~~k 78 (94)
...+|-|-.+.+-+++++++.++--.|.+++
T Consensus 197 ~~~~g~f~wl~i~~~l~~~~Y~i~g~~~n~~ 227 (268)
T PF09451_consen 197 SGGWGFFTWLFIILFLFLAAYLIFGSWYNYN 227 (268)
T ss_pred cccccHHHHHHHHHHHHHHHHhhhhhheeec
Confidence 4566755545555555555555554554443
No 65
>PF10624 TraS: Plasmid conjugative transfer entry exclusion protein TraS; InterPro: IPR018898 Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer []. TraS on the recipient cell is known to form an interaction with TraG on the donor cell [].
Probab=31.85 E-value=93 Score=21.10 Aligned_cols=32 Identities=16% Similarity=0.054 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q psy2804 53 VFYILGAGLLLAMAVALVEFCYNTHMEASNNK 84 (94)
Q Consensus 53 vFiil~~g~~lal~i~i~e~~~~~~k~~~~~~ 84 (94)
+|+++++.+=..+++.++--+-++++.+...|
T Consensus 29 ~fil~f~~lWqglFiwlF~qIrkKr~v~defk 60 (164)
T PF10624_consen 29 IFILLFIVLWQGLFIWLFIQIRKKRNVSDEFK 60 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchhc
Confidence 57777777777777777766655555444434
No 66
>PRK10797 glutamate and aspartate transporter subunit; Provisional
Probab=31.19 E-value=21 Score=26.05 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=17.9
Q ss_pred cccccccCCchhhHHHhhcCC
Q psy2804 9 FGNPPNNAGELSRLQKKWWID 29 (94)
Q Consensus 9 ~~LkL~E~G~l~~L~~kW~~~ 29 (94)
++.+++++|.+++|.+||+..
T Consensus 252 ~L~~l~~~G~l~~i~~kw~~~ 272 (302)
T PRK10797 252 TIAQAQTSGEAEKWFDKWFKN 272 (302)
T ss_pred HHHHHHhCchHHHHHHHHcCC
Confidence 345788999999999999974
No 67
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=31.09 E-value=79 Score=19.26 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=22.2
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2804 44 ELALSNVAGVFYILGAGLLLAMAVALVEFCYNTHME 79 (94)
Q Consensus 44 ~L~l~~~~GvFiil~~g~~lal~i~i~e~~~~~~k~ 79 (94)
+++..-++|+ +.+-.+++++|...-|.+.+.++
T Consensus 30 ~ls~g~LaGi---V~~D~vlTLLIv~~vy~car~r~ 62 (79)
T PF07213_consen 30 PLSPGLLAGI---VAADAVLTLLIVLVVYYCARPRR 62 (79)
T ss_pred ccCHHHHHHH---HHHHHHHHHHHHHHHHhhccccc
Confidence 4555556654 46777888888888887765443
No 68
>PF14979 TMEM52: Transmembrane 52
Probab=30.49 E-value=1.3e+02 Score=20.49 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=17.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2804 50 VAGVFYILGAGLLLAMAVALVEFCYNTHM 78 (94)
Q Consensus 50 ~~GvFiil~~g~~lal~i~i~e~~~~~~k 78 (94)
++-+-++.+.-+..++...++.|++.+|+
T Consensus 22 IwLill~~~llLLCG~ta~C~rfCClrk~ 50 (154)
T PF14979_consen 22 IWLILLIGFLLLLCGLTASCVRFCCLRKQ 50 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33333334444555778888898887766
No 69
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=29.67 E-value=42 Score=24.77 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2804 55 YILGAGLLLAMAVALVEFCY 74 (94)
Q Consensus 55 iil~~g~~lal~i~i~e~~~ 74 (94)
+=+++|++|+.++.++-..|
T Consensus 273 vPIaVG~~La~lvlivLiaY 292 (306)
T PF01299_consen 273 VPIAVGAALAGLVLIVLIAY 292 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33556666666665554444
No 70
>MTH00030 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=29.67 E-value=1e+02 Score=20.11 Aligned_cols=29 Identities=10% Similarity=0.276 Sum_probs=19.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2804 49 NVAGVFYILGAGLLLAMAVALVEFCYNTH 77 (94)
Q Consensus 49 ~~~GvFiil~~g~~lal~i~i~e~~~~~~ 77 (94)
.+..++..+.+|++++......-.+-..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 32 (123)
T MTH00030 4 EFKTIFFSTLLGVGIILLLVSISFTLGNS 32 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 35667777777777777766666665443
No 71
>PF15179 Myc_target_1: Myc target protein 1
Probab=29.39 E-value=95 Score=22.03 Aligned_cols=31 Identities=10% Similarity=0.227 Sum_probs=18.1
Q ss_pred cccccccchhHHH-HHHHHHHHHHHHHHHHHH
Q psy2804 44 ELALSNVAGVFYI-LGAGLLLAMAVALVEFCY 74 (94)
Q Consensus 44 ~L~l~~~~GvFii-l~~g~~lal~i~i~e~~~ 74 (94)
..+.+++-=.|.+ +++|++++.+|+++-.+.
T Consensus 15 ~f~~~~lIlaF~vSm~iGLviG~li~~Lltwl 46 (197)
T PF15179_consen 15 NFDWEDLILAFCVSMAIGLVIGALIWALLTWL 46 (197)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555655 677777777666554443
No 72
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=29.18 E-value=77 Score=24.17 Aligned_cols=28 Identities=21% Similarity=0.093 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy2804 53 VFYILGAGLLLAMAVALVEFCYNTHMEA 80 (94)
Q Consensus 53 vFiil~~g~~lal~i~i~e~~~~~~k~~ 80 (94)
+-.||.+.-++|++..++-=+|.+|++.
T Consensus 4 Lr~ILIIvG~IAIiaLLvhGlWtsRkE~ 31 (324)
T COG3115 4 LRLILIIVGAIAIIALLVHGLWTSRKER 31 (324)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhcchhh
Confidence 3355666666677777777788776653
No 73
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.58 E-value=88 Score=24.30 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccc
Q psy2804 56 ILGAGLLLAMAVALVEFCYNTHMEASNNKVS 86 (94)
Q Consensus 56 il~~g~~lal~i~i~e~~~~~~k~~~~~~~s 86 (94)
++.....+.+++++++++|+.++-.++-|+|
T Consensus 193 ~~l~~~~~~liia~~D~~~qr~~~~k~lkMt 223 (363)
T COG1377 193 LLLAVLLLLLIVAAFDYFYQRFQYIKKLKMT 223 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 4455556667788899999887776666655
No 74
>COG4023 SBH1 Preprotein translocase subunit Sec61beta [Intracellular trafficking and secretion]
Probab=28.11 E-value=81 Score=18.02 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2804 55 YILGAGLLLAMAVALVEFCY 74 (94)
Q Consensus 55 iil~~g~~lal~i~i~e~~~ 74 (94)
+++.+++.+++++.+..+++
T Consensus 36 ~vV~~~~av~~lvi~A~~f~ 55 (57)
T COG4023 36 LVVYAGIAVAILVIAAHIFA 55 (57)
T ss_pred hhHHHHHHHHHHHHHHHHhc
Confidence 56778888888888777653
No 75
>PF01054 MMTV_SAg: Mouse mammary tumour virus superantigen; InterPro: IPR001213 The Mouse mammary tumor virus (MMTV) is a milk-transmitted type B retrovirus. The superantigen (SAg) is encoded in the long terminal repeat [].
Probab=27.75 E-value=1.1e+02 Score=22.62 Aligned_cols=59 Identities=20% Similarity=0.393 Sum_probs=31.2
Q ss_pred hhhHHHhhcCCCCCCCCCC---------ccCcc---CcccccccchhHHH-HHHHHHHHHHHHHHHHHHHhhcc
Q psy2804 19 LSRLQKKWWIDTSQCKSSK---------SQDTH---SELALSNVAGVFYI-LGAGLLLAMAVALVEFCYNTHME 79 (94)
Q Consensus 19 l~~L~~kW~~~~~~C~~~~---------~~~~~---~~L~l~~~~GvFii-l~~g~~lal~i~i~e~~~~~~k~ 79 (94)
|.+|++||..+ ..|+.-. +.+++ ..++.++- .++++ .-.|+.+-++=.+.|...+.++.
T Consensus 1 mprlqqkwlns-recptlr~eaakglfptkddpsa~~~mspsdk-di~i~ccklgiallclgllgevavra~ra 72 (313)
T PF01054_consen 1 MPRLQQKWLNS-RECPTLRREAAKGLFPTKDDPSACTRMSPSDK-DILILCCKLGIALLCLGLLGEVAVRARRA 72 (313)
T ss_pred Cchhhhhhccc-ccCCCchhhhhcCCCCCCCCchhhccCCCCcC-ceEEeehhhhHHHHHHHHHHHHHHHHHhh
Confidence 45789999985 4688511 11121 13333332 33332 34455555566677777665543
No 76
>PRK15097 cytochrome d terminal oxidase subunit 1; Provisional
Probab=27.54 E-value=56 Score=26.57 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy2804 53 VFYILGAGLLLAMAVALVEFCYNTHMEAS 81 (94)
Q Consensus 53 vFiil~~g~~lal~i~i~e~~~~~~k~~~ 81 (94)
.|+....+++++++++++|.+|-+.++..
T Consensus 19 H~lFvpltiGL~~llai~E~~~~rtg~~~ 47 (522)
T PRK15097 19 HFLFVPLTLGMAFLLAIMETVYVLSGKQI 47 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 35667788899999999999997766544
No 77
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=27.47 E-value=90 Score=26.10 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q psy2804 53 VFYILGAGLLLAMAVALVEFCYNTHMEASNNKVST 87 (94)
Q Consensus 53 vFiil~~g~~lal~i~i~e~~~~~~k~~~~~~~s~ 87 (94)
++.++...+++.++++++++.|+.++-.++-|+|-
T Consensus 481 l~~Lvl~vllvllVIAiiD~~~QR~~f~KkLKMSK 515 (646)
T PRK12773 481 SFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTP 515 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 44456666677788999999999888877777763
No 78
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=27.08 E-value=21 Score=25.84 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=21.6
Q ss_pred CCccccccc-cccCCchhhHHHhhcCC
Q psy2804 4 GGTVYFGNP-PNNAGELSRLQKKWWID 29 (94)
Q Consensus 4 ~~~~~~~Lk-L~E~G~l~~L~~kW~~~ 29 (94)
|+-|--+|+ |+|.|..+.|+++|=..
T Consensus 92 GGNTF~LL~~lke~gld~iIr~~vk~G 118 (224)
T COG3340 92 GGNTFNLLQELKETGLDDIIRERVKAG 118 (224)
T ss_pred CchHHHHHHHHHHhCcHHHHHHHHHcC
Confidence 566777886 89999999999999753
No 79
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=26.88 E-value=1.1e+02 Score=19.56 Aligned_cols=34 Identities=15% Similarity=0.062 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q psy2804 53 VFYILGAGLLLAMAVALVEFCYNTHMEASNNKVS 86 (94)
Q Consensus 53 vFiil~~g~~lal~i~i~e~~~~~~k~~~~~~~s 86 (94)
.|++++..+..+.++.+....+..+++-++.|.+
T Consensus 42 g~~llgL~i~a~aFi~Va~~a~~ty~Ei~~Gk~~ 75 (104)
T TIGR03745 42 GGILLGLLIAAIAFIGVAYHALGTYHEIRTGKAT 75 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhh
Confidence 3456666666667777777778888887776654
No 80
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=26.80 E-value=1.4e+02 Score=17.25 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy2804 52 GVFYILGAGLLLAMAVALVEFCY 74 (94)
Q Consensus 52 GvFiil~~g~~lal~i~i~e~~~ 74 (94)
|+.++..+=.++.+++.++..+.
T Consensus 11 Gm~iVF~~L~lL~~~i~l~~~~~ 33 (79)
T PF04277_consen 11 GMGIVFLVLILLILVISLMSKLI 33 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445566666666663
No 81
>COG5035 CDC50 Cell cycle control protein [Cell division and chromosome partitioning / Transcription / Signal transduction mechanisms]
Probab=26.64 E-value=1.1e+02 Score=23.60 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=25.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q psy2804 51 AGVFYILGAGLLLAMAVALVEFCYNTHMEASNNKVS 86 (94)
Q Consensus 51 ~GvFiil~~g~~lal~i~i~e~~~~~~k~~~~~~~s 86 (94)
+-+++|.++-+++.-+++.++++++-|+.+...-.+
T Consensus 333 GI~ylivg~ical~~~if~~~~~f~pR~~~Dh~yLn 368 (372)
T COG5035 333 GIVYLIVGGICALLGLIFLIKWLFKPRKMADHSYLN 368 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCcccCCccccc
Confidence 335566777777777888888888877776555443
No 82
>COG4744 Uncharacterized conserved protein [Function unknown]
Probab=26.38 E-value=80 Score=20.65 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=21.0
Q ss_pred cCcccccccchhHHHHHHHHHHHHHHH
Q psy2804 42 HSELALSNVAGVFYILGAGLLLAMAVA 68 (94)
Q Consensus 42 ~~~L~l~~~~GvFiil~~g~~lal~i~ 68 (94)
..-.++.|+--+|+++.++++++++..
T Consensus 20 dPmtGvANLfDaamVfsva~LI~lv~S 46 (121)
T COG4744 20 DPMTGVANLFDAAMVFSVALLIALVMS 46 (121)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 334588899999999888888877765
No 83
>COG1271 CydA Cytochrome bd-type quinol oxidase, subunit 1 [Energy production and conversion]
Probab=26.07 E-value=56 Score=26.11 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy2804 53 VFYILGAGLLLAMAVALVEFCYNTHMEASNN 83 (94)
Q Consensus 53 vFiil~~g~~lal~i~i~e~~~~~~k~~~~~ 83 (94)
.|+....+++++++++++|.+|-+.++..-+
T Consensus 19 HilFv~lTiGl~~~lai~e~~~~~t~d~~y~ 49 (457)
T COG1271 19 HILFVPLTIGLAFMLAIMETLYVKTKDEIYK 49 (457)
T ss_pred HHHHHhHHhhHHHHHHHHHHHHHHcCcHHHH
Confidence 3556788888999999999999887765433
No 84
>PF11359 gpUL132: Glycoprotein UL132; InterPro: IPR021023 Glycoprotein UL132 is a low-abundance structural component of Human herpesvirus 5 []. The function of this protein is not fully understood.
Probab=25.93 E-value=73 Score=23.12 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=25.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2804 48 SNVAGVFYILGAGLLLAMAVALVEFCYNTHME 79 (94)
Q Consensus 48 ~~~~GvFiil~~g~~lal~i~i~e~~~~~~k~ 79 (94)
.-++-+||++.+.+++++++..+--+|-..+.
T Consensus 49 kvL~IliYcVTg~sllsli~VtvaalYsSC~~ 80 (235)
T PF11359_consen 49 KVLAILIYCVTGFSLLSLIVVTVAALYSSCCR 80 (235)
T ss_pred HHHhhheeeehhHHHHHHHHHHHHHHHHHHHh
Confidence 44566888888999999999999999876543
No 85
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=25.76 E-value=1.1e+02 Score=21.03 Aligned_cols=6 Identities=33% Similarity=0.783 Sum_probs=3.6
Q ss_pred CCCCCC
Q psy2804 31 SQCKSS 36 (94)
Q Consensus 31 ~~C~~~ 36 (94)
+.|-..
T Consensus 15 ~ecls~ 20 (189)
T PF05568_consen 15 GECLSP 20 (189)
T ss_pred hhhcCC
Confidence 567654
No 86
>KOG4783|consensus
Probab=25.72 E-value=1.8e+02 Score=18.44 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2804 54 FYILGAGLLLAMAVALVEFCYNTHME 79 (94)
Q Consensus 54 Fiil~~g~~lal~i~i~e~~~~~~k~ 79 (94)
.+.-+++.++++-+++.-++|+..+.
T Consensus 66 ~iySaI~aVVavHvalglyiy~A~~~ 91 (102)
T KOG4783|consen 66 DIYSAICAVVAVHVALGLYIYRAIYA 91 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556666777777778888776554
No 87
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=25.47 E-value=88 Score=15.41 Aligned_cols=13 Identities=31% Similarity=0.393 Sum_probs=8.7
Q ss_pred chhHHHHHHHHHH
Q psy2804 51 AGVFYILGAGLLL 63 (94)
Q Consensus 51 ~GvFiil~~g~~l 63 (94)
-++|.++.+++.+
T Consensus 10 i~ly~~l~~~s~~ 22 (29)
T TIGR03063 10 IGLYAVLFLGSGL 22 (29)
T ss_pred HHHHHHHHHHHHH
Confidence 4788887766543
No 88
>MTH00092 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=25.44 E-value=1.6e+02 Score=18.66 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Q psy2804 55 YILGAGLLLAMAVALVEFCYNTHMEASNNKVSTIP 89 (94)
Q Consensus 55 iil~~g~~lal~i~i~e~~~~~~k~~~~~~~s~~~ 89 (94)
.++..++++++++....++...++ +.++|.|..|
T Consensus 6 ~~~~~~~~l~~~l~~l~~~l~~~~-~~~~K~s~yE 39 (111)
T MTH00092 6 FVFLFTLLLLMLLYLLNFFLSVKK-FDLLKVSSFE 39 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCC-CCcccCCccC
Confidence 345566666666666665543333 2355655443
No 89
>PRK06602 NADH:ubiquinone oxidoreductase subunit A; Validated
Probab=25.41 E-value=1.3e+02 Score=19.32 Aligned_cols=37 Identities=11% Similarity=0.054 Sum_probs=18.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Q psy2804 51 AGVFYILGAGLLLAMAVALVEFCYNTHMEASNNKVSTI 88 (94)
Q Consensus 51 ~GvFiil~~g~~lal~i~i~e~~~~~~k~~~~~~~s~~ 88 (94)
.++.+.+..+.+++.++....++...++ ..++|.|..
T Consensus 9 ~~~~~~~~~~~~i~~~~~~l~~~l~~~~-~~~~K~s~y 45 (121)
T PRK06602 9 LPFLIFLIVAIGLGILLLVAGKLLGPRA-PDREKNSPY 45 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCCccc
Confidence 3444444455555555555555443332 245555443
No 90
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=25.38 E-value=23 Score=23.50 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=2.5
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q psy2804 50 VAGVFYILGAGLLLAMAVAL 69 (94)
Q Consensus 50 ~~GvFiil~~g~~lal~i~i 69 (94)
+..+-.|++..+.+.+++.+
T Consensus 75 ~~l~~pi~~sal~v~lVl~l 94 (129)
T PF12191_consen 75 FPLLWPILGSALSVVLVLAL 94 (129)
T ss_dssp SSSS----------------
T ss_pred cceehhhhhhHHHHHHHHHH
Confidence 66666666555555555555
No 91
>KOG4564|consensus
Probab=24.84 E-value=80 Score=25.36 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=24.6
Q ss_pred cCCCCCCCCCCccCccCc---ccccccchhHHHHHHHHHHHHHHHHHHHHHHh
Q psy2804 27 WIDTSQCKSSKSQDTHSE---LALSNVAGVFYILGAGLLLAMAVALVEFCYNT 76 (94)
Q Consensus 27 ~~~~~~C~~~~~~~~~~~---L~l~~~~GvFiil~~g~~lal~i~i~e~~~~~ 76 (94)
|.+.+.|........... .-++...-++++--.-++++++++++-|.+.+
T Consensus 121 W~nyt~C~~~~~~~~~~~~~~~~~~~~~~lytvGyslSl~sL~vAl~If~~FR 173 (473)
T KOG4564|consen 121 WTNYTACGKNEEEEERQLDREYFLELLKILYTVGYSLSLVSLLVALIIFLYFR 173 (473)
T ss_pred CCCchhccCcchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444567887543211111 11111222444444555667777777777654
No 92
>CHL00022 ndhC NADH dehydrogenase subunit 3
Probab=24.71 E-value=1.4e+02 Score=19.22 Aligned_cols=37 Identities=14% Similarity=0.066 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Q psy2804 52 GVFYILGAGLLLAMAVALVEFCYNTHMEASNNKVSTIP 89 (94)
Q Consensus 52 GvFiil~~g~~lal~i~i~e~~~~~~k~~~~~~~s~~~ 89 (94)
.+++.+.++.++++++.....+...+ .+.++|.|..|
T Consensus 9 ~i~~~~~~~~~l~~~~~~l~~~l~~~-~~~~~k~s~yE 45 (120)
T CHL00022 9 IFWAFLIISSLIPILAFLISGLLAPI-SKGPEKLSSYE 45 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC-CCCcccCCCcC
Confidence 34344445556666555555544333 23355555443
No 93
>MTH00203 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=24.50 E-value=1.7e+02 Score=18.37 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Q psy2804 54 FYILGAGLLLAMAVALVEFCYNTHMEASNNKVSTI 88 (94)
Q Consensus 54 Fiil~~g~~lal~i~i~e~~~~~~k~~~~~~~s~~ 88 (94)
++.+..++++++++....++.. .+...++|-|..
T Consensus 5 ~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~K~s~y 38 (112)
T MTH00203 5 MLFFLIALLLSLILLFIAFWLP-KVNPDGEKLSPY 38 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-ccCCCcccCccc
Confidence 4445566666666666666542 222234554433
No 94
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=24.47 E-value=1.1e+02 Score=25.20 Aligned_cols=34 Identities=12% Similarity=0.238 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q psy2804 54 FYILGAGLLLAMAVALVEFCYNTHMEASNNKVST 87 (94)
Q Consensus 54 Fiil~~g~~lal~i~i~e~~~~~~k~~~~~~~s~ 87 (94)
+.++....++.++++++++.|++++-.++-|+|-
T Consensus 447 ~~l~~~~~~~~~via~~D~~~q~~~~~k~lkMsk 480 (609)
T PRK12772 447 ISIFFRITLIMIIIAVADYVYQKYQYNKDLRMTK 480 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 3345555566778899999999888777777763
No 95
>PF04483 DUF565: Protein of unknown function (DUF565); InterPro: IPR007572 This family represents Ycf20, it is found in cyanobacteria and is also encoded in plant and algal chloroplasts; its function is unknown. As the family is exclusively found in phototrophic organisms it may therefore play a role in photosynthesis.
Probab=24.40 E-value=72 Score=18.14 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHh
Q psy2804 61 LLLAMAVALVEFCYNT 76 (94)
Q Consensus 61 ~~lal~i~i~e~~~~~ 76 (94)
++.++++.+.|.+-+.
T Consensus 8 i~a~~iv~~~E~i~~l 23 (60)
T PF04483_consen 8 IAAAIIVLFIEVISRL 23 (60)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556677777776543
No 96
>PRK12659 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=24.40 E-value=1.5e+02 Score=19.00 Aligned_cols=34 Identities=0% Similarity=-0.014 Sum_probs=25.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy2804 50 VAGVFYILGAGLLLAMAVALVEFCYNTHMEASNN 83 (94)
Q Consensus 50 ~~GvFiil~~g~~lal~i~i~e~~~~~~k~~~~~ 83 (94)
..-+|+++++.+..|...++.-..|+.++.....
T Consensus 72 lpQAlvLTaIVIg~Av~a~~lvl~~r~~~~~~t~ 105 (117)
T PRK12659 72 LPQALILTAIVIGFGVQAFAIVLIKRAYQVVGTD 105 (117)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcccCcc
Confidence 4678888888888888888887788777654443
No 97
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=23.59 E-value=74 Score=17.09 Aligned_cols=13 Identities=15% Similarity=0.189 Sum_probs=6.3
Q ss_pred HHHHHHHHHhhcc
Q psy2804 67 VALVEFCYNTHME 79 (94)
Q Consensus 67 i~i~e~~~~~~k~ 79 (94)
..+.-++|++...
T Consensus 23 ~iva~~iYRKw~a 35 (43)
T PF08114_consen 23 GIVALFIYRKWQA 35 (43)
T ss_pred HHHHHHHHHHHHH
Confidence 3344456655443
No 98
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=23.48 E-value=93 Score=19.73 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=16.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH
Q psy2804 49 NVAGVFYILGAGLLLAMAVALVE 71 (94)
Q Consensus 49 ~~~GvFiil~~g~~lal~i~i~e 71 (94)
|..-.++++++|+.+++++.+..
T Consensus 6 d~sk~~l~~aiG~~lal~i~~lt 28 (104)
T PF01307_consen 6 DYSKSYLAAAIGVSLALIIFTLT 28 (104)
T ss_pred CCccchhHHHHHHHHHHHHHHhh
Confidence 34566788888888888877653
No 99
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=23.37 E-value=1e+02 Score=19.21 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=12.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHH
Q psy2804 49 NVAGVFYILGAGLLLAMAVALVEFC 73 (94)
Q Consensus 49 ~~~GvFiil~~g~~lal~i~i~e~~ 73 (94)
++.|+++.=.+=+++|++.+++||-
T Consensus 10 y~s~vli~GIiLL~~ACIFAfidFS 34 (91)
T PHA02680 10 YYSGVLICGVLLLTAACVFAFVDFS 34 (91)
T ss_pred hccHHHHHHHHHHHHHHHHhhhhhh
Confidence 4556654433444445555555543
No 100
>KOG3491|consensus
Probab=23.10 E-value=1e+02 Score=17.89 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=13.3
Q ss_pred cchhHHHHHHHHHHHHHH
Q psy2804 50 VAGVFYILGAGLLLAMAV 67 (94)
Q Consensus 50 ~~GvFiil~~g~~lal~i 67 (94)
+-|+|+.+.+|+.+--+|
T Consensus 41 LlglFvFVVcGSa~FqII 58 (65)
T KOG3491|consen 41 LLGLFVFVVCGSALFQII 58 (65)
T ss_pred HHHHHHHHhhcHHHHHHH
Confidence 568999999988764444
No 101
>KOG1631|consensus
Probab=23.04 E-value=1.4e+02 Score=21.93 Aligned_cols=35 Identities=31% Similarity=0.338 Sum_probs=22.9
Q ss_pred ccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2804 41 THSELALSNVAGVFYILGAGLLLAMAVALVEFCYNTH 77 (94)
Q Consensus 41 ~~~~L~l~~~~GvFiil~~g~~lal~i~i~e~~~~~~ 77 (94)
+.+.|+-+++ --+++.+|+++-+++..-.++-+..
T Consensus 176 ~~~gl~GETv--FL~~lligl~llllv~~~q~L~~~s 210 (261)
T KOG1631|consen 176 DDSGLSGETV--FLYILLIGLSLLLLVLSQQFLSKLS 210 (261)
T ss_pred cCCCcccchh--HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445655543 2346788888888888888876663
No 102
>PRK11260 cystine transporter subunit; Provisional
Probab=22.82 E-value=35 Score=23.89 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=16.3
Q ss_pred cccccCCchhhHHHhhcCC
Q psy2804 11 NPPNNAGELSRLQKKWWID 29 (94)
Q Consensus 11 LkL~E~G~l~~L~~kW~~~ 29 (94)
-+++++|.++++.+||+..
T Consensus 244 ~~~~~~g~~~~i~~k~~~~ 262 (266)
T PRK11260 244 AEMQKDGTLKALSEKWFGA 262 (266)
T ss_pred HHHHhCCcHHHHHHHhcCC
Confidence 3678899999999999975
No 103
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=22.72 E-value=1.6e+02 Score=21.04 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccc
Q psy2804 55 YILGAGLLLAMAVALVEFCYNTHMEASNNK 84 (94)
Q Consensus 55 iil~~g~~lal~i~i~e~~~~~~k~~~~~~ 84 (94)
..+..+..++.++.+.+|.++.+...++.|
T Consensus 220 ~~~~~~~~~s~l~LF~~Fy~~~Y~~~~~~k 249 (250)
T PF01151_consen 220 AILGLVYYVSYLYLFINFYIKSYIKKKKKK 249 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCCCCC
Confidence 467778888999999999988877766554
No 104
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=22.65 E-value=2.2e+02 Score=18.15 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=13.8
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q psy2804 51 AGVFYILGAGLLLAMAVALVE 71 (94)
Q Consensus 51 ~GvFiil~~g~~lal~i~i~e 71 (94)
.+.|++..+-+++|++++++.
T Consensus 53 ~~~~~~~~~w~~~A~~ly~~R 73 (103)
T PF11027_consen 53 NSMFMMMMLWMVLAMALYLLR 73 (103)
T ss_pred ccHHHHHHHHHHHHHHHHHcC
Confidence 457777777666666666554
No 105
>PRK12660 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=22.61 E-value=1.8e+02 Score=18.57 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=27.1
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy2804 47 LSNVAGVFYILGAGLLLAMAVALVEFCYNTHMEASN 82 (94)
Q Consensus 47 l~~~~GvFiil~~g~~lal~i~i~e~~~~~~k~~~~ 82 (94)
.+-+.-+|+++++.+..|...++.-..|+.++....
T Consensus 66 ~dPlpQalvLTaIVIg~av~a~lL~l~~r~~~~~~t 101 (114)
T PRK12660 66 VDPLLQAIVLTAIVIGFGMTAFLLVLVYRTYKVTKE 101 (114)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 344678889988888888888888888877765443
No 106
>PHA03170 UL37 tegument protein; Provisional
Probab=22.49 E-value=61 Score=24.21 Aligned_cols=30 Identities=13% Similarity=0.363 Sum_probs=20.9
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHH
Q psy2804 44 ELALSNVAGVFYILGAGLLLAMAVALVEFC 73 (94)
Q Consensus 44 ~L~l~~~~GvFiil~~g~~lal~i~i~e~~ 73 (94)
...+.++.|+|++.+.+..+-++..++-++
T Consensus 253 ~~ql~~~~GlFf~~gGa~~ml~LfCclSm~ 282 (293)
T PHA03170 253 ITQSMSAAGLFFLAGGAFTMLLLLCCLSMI 282 (293)
T ss_pred cchhhhheeeeeeeccHHHHHHHHHHHHHH
Confidence 445568899999888777666665555544
No 107
>PRK07928 NADH dehydrogenase subunit A; Validated
Probab=22.34 E-value=1.9e+02 Score=18.57 Aligned_cols=31 Identities=10% Similarity=0.015 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccc
Q psy2804 57 LGAGLLLAMAVALVEFCYNTHMEASNNKVSTI 88 (94)
Q Consensus 57 l~~g~~lal~i~i~e~~~~~~k~~~~~~~s~~ 88 (94)
+.++++++++..+.-.+...++ +.++|.|-.
T Consensus 11 ~~~~~~~~~~~~~~~~~l~~~~-~~~~K~s~y 41 (119)
T PRK07928 11 GALAAAFAVVSVVVASLVGPKR-YNRAKLEAY 41 (119)
T ss_pred HHHHHHHHHHHHHHHHHhCCCC-CCcccCCcc
Confidence 3444455555554554443332 335555443
No 108
>KOG3653|consensus
Probab=22.25 E-value=2.6e+02 Score=22.92 Aligned_cols=35 Identities=26% Similarity=0.224 Sum_probs=20.1
Q ss_pred cccchhHHHHHH---HHHHHHHHHHHHHHHHhhccccc
Q psy2804 48 SNVAGVFYILGA---GLLLAMAVALVEFCYNTHMEASN 82 (94)
Q Consensus 48 ~~~~GvFiil~~---g~~lal~i~i~e~~~~~~k~~~~ 82 (94)
....-+++++.. .+++++++..+-+.|+.+|.++.
T Consensus 149 ~~~~~~~~al~~~~~v~~l~~lvi~~~~~~r~~k~~~~ 186 (534)
T KOG3653|consen 149 NDGEVLIYALIPLLLVSLLAALVILAFLGYRQRKNARE 186 (534)
T ss_pred ccCceehhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 333344444443 55566666666667777777664
No 109
>PF15431 TMEM190: Transmembrane protein 190
Probab=22.22 E-value=1.6e+02 Score=19.31 Aligned_cols=24 Identities=17% Similarity=0.301 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Q psy2804 57 LGAGLLLAMAVALVEFCYNTHMEA 80 (94)
Q Consensus 57 l~~g~~lal~i~i~e~~~~~~k~~ 80 (94)
..+|..+-++..+.-|+|.+++..
T Consensus 66 wtC~gll~Li~~iclFWWAkRrd~ 89 (134)
T PF15431_consen 66 WTCGGLLLLICSICLFWWAKRRDM 89 (134)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhch
Confidence 556666677777788888887765
No 110
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed
Probab=22.04 E-value=36 Score=23.47 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.4
Q ss_pred ccccccCCchhhHHHhhcCC
Q psy2804 10 GNPPNNAGELSRLQKKWWID 29 (94)
Q Consensus 10 ~LkL~E~G~l~~L~~kW~~~ 29 (94)
+.++.++|.++++.+||+..
T Consensus 225 l~~~~~~g~~~~i~~k~~~~ 244 (247)
T PRK09495 225 LKTLKENGTYAEIYKKWFGT 244 (247)
T ss_pred HHHHHHCCcHHHHHHHHcCC
Confidence 34578899999999999853
No 111
>PF10355 Ytp1: Protein of unknown function (Ytp1); InterPro: IPR018827 This entry represents a conserved sequence region found a family of fungal proteins. It appears to contain regions similar to mitochondrial electron transport proteins. The C-terminal domain is hydrophobic and negatively charged. There are consensus sites for both N-linked glycosylation and cAMP-dependent protein kinase phosphorylation [].
Probab=21.57 E-value=1.1e+02 Score=22.85 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=31.6
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHH--HHHhhccc---ccccccccccccC
Q psy2804 43 SELALSNVAGVFYILGAGLLLAMAVALVEF--CYNTHMEA---SNNKVSTIPNNID 93 (94)
Q Consensus 43 ~~L~l~~~~GvFiil~~g~~lal~i~i~e~--~~~~~k~~---~~~~~s~~~~~~~ 93 (94)
+-|----.+|+|+..++-......-...+. .|+++... ..++....+|++|
T Consensus 25 ~cLAH~IkGg~F~~yGiltl~rylg~~~~~GwaWn~~~~~~~~~~~~~~~S~Ef~e 80 (271)
T PF10355_consen 25 QCLAHFIKGGIFFWYGILTLARYLGIFAELGWAWNRKPSRPNRFWRRRGPSQEFVE 80 (271)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHcchhhhccccccccccccCCCCHHHHH
Confidence 344445678999988887666666666665 56553222 2345666677765
No 112
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=21.56 E-value=1.5e+02 Score=19.62 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy2804 58 GAGLLLAMAVALVEFCYNT 76 (94)
Q Consensus 58 ~~g~~lal~i~i~e~~~~~ 76 (94)
...+..|+++.++|+++++
T Consensus 89 ~~allsA~~i~v~E~fFH~ 107 (136)
T PF10710_consen 89 WAALLSAVLIGVGEYFFHR 107 (136)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345668899999999866
No 113
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=21.49 E-value=1.3e+02 Score=16.96 Aligned_cols=17 Identities=18% Similarity=0.423 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy2804 53 VFYILGAGLLLAMAVAL 69 (94)
Q Consensus 53 vFiil~~g~~lal~i~i 69 (94)
+.+++++|++++-+.++
T Consensus 7 lIIviVlgvIigNia~L 23 (55)
T PF11446_consen 7 LIIVIVLGVIIGNIAAL 23 (55)
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 45566666666665554
No 114
>COG2056 Predicted permease [General function prediction only]
Probab=21.41 E-value=1.2e+02 Score=24.02 Aligned_cols=40 Identities=20% Similarity=0.400 Sum_probs=29.2
Q ss_pred ccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy2804 41 THSELALSNVAGVFYILGAGLLLAMAVALVEFCYNTHMEAS 81 (94)
Q Consensus 41 ~~~~L~l~~~~GvFiil~~g~~lal~i~i~e~~~~~~k~~~ 81 (94)
...+++++.+...-.+-+.|++++++++++-. |++.|+-+
T Consensus 181 a~~~~~~~~V~~am~ip~lgMi~GLl~ai~~~-YrKpReY~ 220 (444)
T COG2056 181 AGVSLSVNQVPKAMWIPGLGMIVGLLLAIFVS-YRKPREYQ 220 (444)
T ss_pred cCCCcchhhhHHHHHHHHHHHHHHHHHHHHHh-hcCCcccc
Confidence 34567777888888999999999999887653 44444433
No 115
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=21.41 E-value=1.4e+02 Score=21.71 Aligned_cols=17 Identities=12% Similarity=0.254 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2804 56 ILGAGLLLAMAVALVEF 72 (94)
Q Consensus 56 il~~g~~lal~i~i~e~ 72 (94)
+|.+-+++|++++++-+
T Consensus 130 mLIClIIIAVLfLICT~ 146 (227)
T PF05399_consen 130 MLICLIIIAVLFLICTL 146 (227)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444443333
No 116
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional
Probab=21.33 E-value=40 Score=23.53 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=16.3
Q ss_pred cccccCCchhhHHHhhcCC
Q psy2804 11 NPPNNAGELSRLQKKWWID 29 (94)
Q Consensus 11 LkL~E~G~l~~L~~kW~~~ 29 (94)
.++.++|.+++|.+||+..
T Consensus 237 ~~l~~~G~~~~i~~ky~~~ 255 (260)
T PRK15010 237 GELRQDGTYDKMAKKYFDF 255 (260)
T ss_pred HHHHhCCcHHHHHHHhcCC
Confidence 3688899999999999863
No 117
>COG0713 NuoK NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]
Probab=21.16 E-value=2.1e+02 Score=18.21 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=24.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy2804 50 VAGVFYILGAGLLLAMAVALVEFCYNTHMEA 80 (94)
Q Consensus 50 ~~GvFiil~~g~~lal~i~i~e~~~~~~k~~ 80 (94)
+-.+|++..+..-.+.-+++.--+|++++.-
T Consensus 60 vfaifvitvAAaE~aVGLailv~~yR~~~ti 90 (100)
T COG0713 60 VFAIFVITVAAAEAAVGLAILVALYRRRGTI 90 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 4578888888888888888888888887653
No 118
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=21.15 E-value=1.2e+02 Score=14.77 Aligned_cols=21 Identities=24% Similarity=0.293 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy2804 57 LGAGLLLAMAVALVEFCYNTH 77 (94)
Q Consensus 57 l~~g~~lal~i~i~e~~~~~~ 77 (94)
-..|+.+|+...++.-+|-.+
T Consensus 6 WilG~~lA~~~~i~~a~wlE~ 26 (28)
T PF08173_consen 6 WILGVLLACAFGILNAMWLEK 26 (28)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 455666777777766666443
No 119
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=20.77 E-value=1.4e+02 Score=17.14 Aligned_cols=15 Identities=20% Similarity=0.425 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy2804 60 GLLLAMAVALVEFCY 74 (94)
Q Consensus 60 g~~lal~i~i~e~~~ 74 (94)
.+.++.++++..++|
T Consensus 13 VLLISfiIlfgRl~Y 27 (59)
T PF11119_consen 13 VLLISFIILFGRLIY 27 (59)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555555
No 120
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=20.65 E-value=1.2e+02 Score=24.45 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2804 53 VFYILGAGLLLAMAVALVEFCYNTHM 78 (94)
Q Consensus 53 vFiil~~g~~lal~i~i~e~~~~~~k 78 (94)
+.+++.+.+++.+++.+.-++++++.
T Consensus 2 ~~~~ii~i~ii~i~~~~~~~~~rr~~ 27 (569)
T PRK04778 2 MIYLIIAIVVIIIIAYLAGLILRKRN 27 (569)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555554556665543
No 121
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=20.62 E-value=30 Score=26.92 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.0
Q ss_pred CcCCcccccccccc-CCchhhHHHhh
Q psy2804 2 KFGGTVYFGNPPNN-AGELSRLQKKW 26 (94)
Q Consensus 2 ~~~~~~~~~LkL~E-~G~l~~L~~kW 26 (94)
-||+|||-+|+-.+ +-.++.|++.|
T Consensus 92 ~~GGGTPslL~~~~l~~ll~~l~~~~ 117 (416)
T COG0635 92 YFGGGTPSLLSPEQLERLLKALRELF 117 (416)
T ss_pred EECCCccccCCHHHHHHHHHHHHHhc
Confidence 38999999998777 67788888887
No 122
>PHA03231 glycoprotein BALF4; Provisional
Probab=20.24 E-value=1.1e+02 Score=26.32 Aligned_cols=23 Identities=13% Similarity=-0.042 Sum_probs=12.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH
Q psy2804 49 NVAGVFYILGAGLLLAMAVALVE 71 (94)
Q Consensus 49 ~~~GvFiil~~g~~lal~i~i~e 71 (94)
-|+|+++++.++.++.+++.+..
T Consensus 703 PFGg~~iillvia~vv~v~l~~r 725 (829)
T PHA03231 703 PFGGLAIGLLVIAVLVAVFLAYR 725 (829)
T ss_pred chHHHHHHHHHHHHhhhhhHHHH
Confidence 36666666655555444444443
Done!