RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2804
(94 letters)
>gnl|CDD|215685 pfam00060, Lig_chan, Ligand-gated ion channel. This family
includes the four transmembrane regions of the
ionotropic glutamate receptors and NMDA receptors.
Length = 268
Score = 56.1 bits (136), Expect = 6e-11
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 17 GELSRLQKKWWIDTSQCKSSKSQDTHSELALSNVAGVFYILGAGL 61
GEL +L+ KWW +C + + S+L L + AG+F ILG GL
Sbjct: 224 GELQKLENKWWKKKGECSLKSTAVSSSQLGLESFAGLFLILGIGL 268
>gnl|CDD|235978 PRK07234, PRK07234, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 470
Score = 30.7 bits (70), Expect = 0.072
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 45 LALSNVAGVFYILGAGLL 62
L SNVA +FY++GA L+
Sbjct: 150 LFYSNVAMLFYLIGAVLV 167
>gnl|CDD|150497 pfam09834, DUF2061, Predicted membrane protein (DUF2061). This
domain, found in various prokaryotic proteins, has no
known function.
Length = 53
Score = 26.0 bits (58), Expect = 1.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 45 LALSNVAGVFYILGAGLLLAMAVALVEFCYNT 76
L + V Y+L L + A+AL+E NT
Sbjct: 10 LHTTVAFLVAYLLTGSLAIGGAIALIEPAVNT 41
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 27.1 bits (60), Expect = 1.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 49 NVAGVFYILGAGLLLAMAVALVEFCYNTH--MEASN 82
N G F+ L GLL+ ++ + EF Y T ME SN
Sbjct: 455 NEPGAFWGLCVGLLIGLSRMITEFAYGTGSCMEPSN 490
>gnl|CDD|234225 TIGR03480, HpnN, hopanoid biosynthesis associated RND transporter
like protein HpnN. The genomes containing members of
this family share the machinery for the biosynthesis of
hopanoid lipids. Furthermore, the genes of this family
are usually located proximal to other components of this
biological process. The proteins appear to be related to
the RND family of export proteins, particularly the
hydrophobe/amphiphile efflux-3 (HAE3) family represented
by TIGR00921.
Length = 862
Score = 27.3 bits (61), Expect = 1.2
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 46 ALSNVAGVFYILGAGLLLAMAVALV 70
+ V V L GL+L A A +
Sbjct: 292 SPRLVFAVLVTLIVGLILTAAFATL 316
>gnl|CDD|217401 pfam03169, OPT, OPT oligopeptide transporter protein. The OPT
family of oligopeptide transporters is distinct from the
ABC pfam00005 and PTR pfam00854 transporter families.
OPT transporters were first recognised in fungi (Candida
albicans and Schizosaccharomyces pombe), but this
alignment also includes orthologues from Arabidopsis
thaliana. OPT transporters are thought to have 12-14
transmembrane domains and contain the following motif:
SPYxEVRxxVxxxDDP.
Length = 619
Score = 26.1 bits (58), Expect = 3.1
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 39 QDTHSELALSN--VAGVFYILGAGLLLAMAVALVEFCYNTHM 78
D H L V +Y+ G L L + +ALV + T +
Sbjct: 336 DDPHRRLMRKYKEVPMWWYLAGLVLSLVLGIALVAALFPTQL 377
>gnl|CDD|215078 PLN00150, PLN00150, potassium ion transporter family protein;
Provisional.
Length = 779
Score = 26.0 bits (57), Expect = 3.3
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 27 WIDTSQCKSS---KSQDTHSELALSNV---AGVFYILG 58
W S + S S DT E+A N AGV YILG
Sbjct: 690 WKRPSSQEDSVSGHSSDTQDEVAFLNKCKEAGVVYILG 727
>gnl|CDD|214437 MTH00152, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 163
Score = 25.6 bits (57), Expect = 3.9
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 35 SSKSQDTHSELALSNVAGVFYILGAGLLLAMAVALVEFCYNTHM 78
SS S L S+ +F L LL+ M V++V+ CY
Sbjct: 118 SSGSLSFGGGLYSSSGWSIFVFLAVLLLIVM-VSVVKICYYEEG 160
>gnl|CDD|143653 cd07912, Tweety_N, N-terminal domain of the protein encoded by the
Drosophila tweety gene and related proteins, a family of
chloride ion channels. The protein product of the
Drosophila tweety (tty) gene is thought to form a
trans-membrane protein with five membrane-spanning
regions and a cytoplasmic C-terminus. This N-terminal
domain contains the putative transmembrane spanning
regions. Tweety has been suggested as a candidate for a
large conductance chloride channel, both in vertebrate
and insect cells. Three human homologs have been
identified and designated TTYH1-3. TTYH2 has been
associated with the progression of cancer, and
Drosophila melanogaster tweety has been assumed to play
a role in development. TTYH2, and TTYH3 bind to and are
ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase,
which most likely plays a role in controlling the
cellular levels of tweety family proteins.
Length = 418
Score = 25.8 bits (57), Expect = 4.4
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 50 VAGVFYILG----AGLLLAMAVALVEFCYNTHMEASNNKVSTIPNNI 92
V G+F ++ GL LA AVAL +FC + N S + ++I
Sbjct: 243 VCGLFALIISWLSLGLYLASAVALSDFCVDPDDYVRNQTPSGLSSDI 289
>gnl|CDD|99970 cd03796, GT1_PIG-A_like, This family is most closely related to the
GT1 family of glycosyltransferases. Phosphatidylinositol
glycan-class A (PIG-A), an X-linked gene in humans, is
necessary for the synthesis of
N-acetylglucosaminyl-phosphatidylinositol, a very early
intermediate in glycosyl phosphatidylinositol
(GPI)-anchor biosynthesis. The GPI-anchor is an
important cellular structure that facilitates the
attachment of many proteins to cell surfaces. Somatic
mutations in PIG-A have been associated with Paroxysmal
Nocturnal Hemoglobinuria (PNH), an acquired
hematological disorder.
Length = 398
Score = 25.2 bits (56), Expect = 5.2
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 75 NTHMEASNN--KVSTIPNNID 93
NT + AS + +VS IPN +D
Sbjct: 158 NTVLRASLDPERVSVIPNAVD 178
>gnl|CDD|237154 PRK12644, PRK12644, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 965
Score = 25.3 bits (56), Expect = 6.5
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 56 ILGAGLLLAMAVALV 70
+LG GL L+ ALV
Sbjct: 873 LLGTGLFLSAGTALV 887
>gnl|CDD|236015 PRK07419, PRK07419, 1,4-dihydroxy-2-naphthoate
octaprenyltransferase; Provisional.
Length = 304
Score = 24.5 bits (54), Expect = 9.9
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 57 LGAGLLLAMAVALVEFCYNTH 77
L A ++L +A +L+ FC + H
Sbjct: 177 LAASIILGLATSLILFCSHFH 197
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.130 0.394
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,466,430
Number of extensions: 331306
Number of successful extensions: 439
Number of sequences better than 10.0: 1
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 19
Length of query: 94
Length of database: 10,937,602
Length adjustment: 61
Effective length of query: 33
Effective length of database: 8,232,008
Effective search space: 271656264
Effective search space used: 271656264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)