RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2804
         (94 letters)



>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane,
           glycoprotein, transport, membrane, postsynaptic cell
           membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus
           norvegicus}
          Length = 823

 Score = 76.8 bits (188), Expect = 3e-18
 Identities = 39/73 (53%), Positives = 47/73 (64%), Gaps = 2/73 (2%)

Query: 17  GELSRLQKKWWIDTSQC--KSSKSQDTHSELALSNVAGVFYILGAGLLLAMAVALVEFCY 74
           G L +L+ KWW D  +C  K S S++  S L+LSNVAGVFYIL  GL LAM VAL+EFCY
Sbjct: 748 GLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCY 807

Query: 75  NTHMEASNNKVST 87
            +  EA   K   
Sbjct: 808 KSRAEAKRMKGLV 820


>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor,
           membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus
           norvegicus} SCOP: c.94.1.1
          Length = 312

 Score = 32.5 bits (73), Expect = 0.010
 Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 17  GELSRLQKKWWIDTSQCKSSKSQDTHSELALSN 49
           G+L  +++KWW   + C   +S++  S L + N
Sbjct: 276 GKLHMMKEKWW-RGNGCPEEESKEA-SALGVQN 306


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.8 bits (69), Expect = 0.051
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 13/53 (24%)

Query: 42   HSEL----ALSNVAGVF------YILGA-GLLLAMAVALVEFCY-NTHMEASN 82
            HS L    AL+++A V        ++   G+ + +AV   E    N  M A N
Sbjct: 1762 HS-LGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813



 Score = 26.2 bits (57), Expect = 2.1
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 4/36 (11%)

Query: 33  CKSSKSQDTHSELALSNVAGVFYILGAGLLLAMAVA 68
            K      T  EL  S + G       GL+ A+A+A
Sbjct: 253 AKLLGF--TPGELR-SYLKGAT-GHSQGLVTAVAIA 284


>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial
           agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane
           protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP:
           c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A*
           1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A*
           1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A
           1my0_A ...
          Length = 263

 Score = 29.6 bits (66), Expect = 0.097
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 17  GELSRLQKKWWIDTSQCKS 35
           G L +L+ KWW D  +C S
Sbjct: 245 GLLDKLKNKWWYDKGECGS 263


>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane,
           ionotropic glutamate receptors, transmembrane, membrane
           protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
          Length = 265

 Score = 29.6 bits (66), Expect = 0.10
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 17  GELSRLQKKWWIDTSQC 33
           G++  L+ KWW    QC
Sbjct: 247 GDMDILKHKWWPKNGQC 263


>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell
           junction, cell membrane, glycoprotein, ION transport,
           ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus
           norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A*
           3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A*
           2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A*
           2i0c_A* ...
          Length = 259

 Score = 25.0 bits (54), Expect = 4.3
 Identities = 5/18 (27%), Positives = 10/18 (55%)

Query: 17  GELSRLQKKWWIDTSQCK 34
           G+L  +++KWW      +
Sbjct: 242 GKLHMMKEKWWRGNGCPE 259


>1m4u_A Noggin; BMP antagonist, BMP-7, bone morphogenetic protein, C knot,
           hormone-growth factor complex; HET: NAG; 2.42A {Homo
           sapiens} SCOP: g.17.1.7
          Length = 206

 Score = 24.7 bits (53), Expect = 4.9
 Identities = 6/35 (17%), Positives = 13/35 (37%)

Query: 1   MKFGGTVYFGNPPNNAGELSRLQKKWWIDTSQCKS 35
           ++F   +  G     + +L R  + W    + C  
Sbjct: 97  LEFSEGLAQGKKQRLSKKLRRKLQMWLWSQTFCPV 131


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.130    0.394 

Gapped
Lambda     K      H
   0.267   0.0797    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,343,598
Number of extensions: 59969
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 10
Length of query: 94
Length of database: 6,701,793
Length adjustment: 61
Effective length of query: 33
Effective length of database: 4,998,612
Effective search space: 164954196
Effective search space used: 164954196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)