RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2804
         (94 letters)



>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat
           (Rattus norvegicus), GluR2 [TaxId: 10116]}
          Length = 260

 Score = 29.2 bits (64), Expect = 0.061
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 17  GELSRLQKKWWIDTSQC 33
           G L +L+ KWW D  +C
Sbjct: 243 GLLDKLKNKWWYDKGEC 259


>d2gtaa1 a.204.1.2 (A:1-98) Hypothetical protein YpjD {Bacillus
          subtilis [TaxId: 1423]}
          Length = 98

 Score = 24.7 bits (54), Expect = 1.4
 Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 8/46 (17%)

Query: 8  YFGNPPNN-------AGELSRLQKKWWIDTSQCKSSKSQDTHSELA 46
          YF +P           GEL+R     + +  +  +   +    E+ 
Sbjct: 24 YF-SPLAMMARLTEELGELAREVNHRYGEKPKKATEDDKSMEEEIG 68


>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 289

 Score = 25.0 bits (53), Expect = 1.7
 Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 1/19 (5%)

Query: 17  GELSRLQKKWWIDTSQCKS 35
           G +  L K W     +C S
Sbjct: 272 GFMEDLDKTWV-RYQECDS 289


>d2etda1 a.29.9.1 (A:35-183) Hypothetical protein TM0961 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 149

 Score = 23.8 bits (51), Expect = 4.1
 Identities = 5/19 (26%), Positives = 8/19 (42%)

Query: 74  YNTHMEASNNKVSTIPNNI 92
           YN  ++  N  +   P  I
Sbjct: 114 YNEAVKKYNTAIKKFPGVI 132


>d1np3a1 a.100.1.2 (A:183-327) Class I ketol-acid reductoisomerase
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 145

 Score = 23.3 bits (50), Expect = 5.9
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 60 GLLLAMAVALVEFCYNTHMEA 80
           +L    V LV+  + T +EA
Sbjct: 14 AVLCGGCVELVKAGFETLVEA 34


>d2axtb1 f.55.1.1 (B:2-489) Photosystem II core light harvesting
           protein PsbB {Thermosynechococcus elongatus [TaxId:
           146786]}
          Length = 488

 Score = 23.2 bits (50), Expect = 7.5
 Identities = 6/27 (22%), Positives = 12/27 (44%)

Query: 3   FGGTVYFGNPPNNAGELSRLQKKWWID 29
           FG  ++  +P    G +  +  +W  D
Sbjct: 161 FGPGMWVSDPYGLTGSVQPVAPEWGPD 187


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.130    0.394 

Gapped
Lambda     K      H
   0.267   0.0647    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 328,373
Number of extensions: 10698
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 12
Length of query: 94
Length of database: 2,407,596
Length adjustment: 57
Effective length of query: 37
Effective length of database: 1,624,986
Effective search space: 60124482
Effective search space used: 60124482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)