BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2807
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BG3|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
Length = 718
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 120/232 (51%), Gaps = 44/232 (18%)
Query: 62 FPKSVSAFFQGSIGEPYQGFPKKLQEKVLG-------------------SLKDHTLDRKP 102
FP+SV F QG IG P+ GFP+ + KVL +L+ +DR
Sbjct: 480 FPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLPRVEGRPGASLPPLDLQALEKELVDRHG 539
Query: 103 ECDLMMED-------------------EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTA 143
E ++ ED FGP+D L TR+FL GP I EEF E + G T
Sbjct: 540 E-EVTPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTL 598
Query: 144 YVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMP 203
++ L++S+ LN G+R VFF NGQLRS+L++D K++ KA D G+IGAPMP
Sbjct: 599 HIKALAVSD-LNRAGQRQVFFELNGQLRSILVKDTQAMKEMHFHPKALKDVKGQIGAPMP 657
Query: 204 GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADG----VHKVRSSNLD 251
G +I++K G +V K L V+S MK ET++ + +G VH + L+
Sbjct: 658 GKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLE 709
>pdb|3BG9|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
Length = 718
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 119/232 (51%), Gaps = 44/232 (18%)
Query: 62 FPKSVSAFFQGSIGEPYQGFPKKLQEKVLG-------------------SLKDHTLDRKP 102
FP+SV F QG IG P+ GFP+ + KVL +L+ +DR
Sbjct: 480 FPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLPRVEGRPGASLPPLDLQALEKELVDRHG 539
Query: 103 ECDLMMED-------------------EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTA 143
E ++ ED FGP+D L TR+FL GP I EEF E + G T
Sbjct: 540 E-EVTPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTL 598
Query: 144 YVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMP 203
++ L++S+ LN G+R V F NGQLRS+L++D K++ KA D G+IGAPMP
Sbjct: 599 HIKALAVSD-LNRAGQRQVAFELNGQLRSILVKDTQAMKEMHFHPKALKDVKGQIGAPMP 657
Query: 204 GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADG----VHKVRSSNLD 251
G +I++K G +V K L V+S MK ET++ + +G VH + L+
Sbjct: 658 GKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLE 709
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 110/236 (46%), Gaps = 38/236 (16%)
Query: 51 KDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHT---------LDRK 101
+ V+ + K+ FP+SV +FF+G IG+P GF K LQ +L + T +D +
Sbjct: 897 QSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEYLEPVDFE 956
Query: 102 PECDLMMEDEFGPVDR----------------------------LPTRIFLNGPNIGEEF 133
+L+ E++ GPV L T F G GE
Sbjct: 957 KVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETV 1016
Query: 134 SCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSD 193
E G + +ISE +++G RT+++ NGQ R + I+D+N ++ KAD
Sbjct: 1017 EIEIDKGKRLIIKLETISEP-DENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKS 1075
Query: 194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSN 249
IGA MPG++ EVK VG+ VK N L++ MK ET I A DGV K + N
Sbjct: 1076 NPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVN 1131
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 110/236 (46%), Gaps = 38/236 (16%)
Query: 51 KDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHT---------LDRK 101
+ V+ + K+ FP+SV +FF+G IG+P GF K LQ +L + T +D +
Sbjct: 897 QSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEYLEPVDFE 956
Query: 102 PECDLMMEDEFGPVDR----------------------------LPTRIFLNGPNIGEEF 133
+L+ E++ GPV L T F G GE
Sbjct: 957 KVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETV 1016
Query: 134 SCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSD 193
E G + +ISE +++G RT+++ NGQ R + I+D+N ++ KAD
Sbjct: 1017 EIEIDKGKRLIIKLETISEP-DENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKS 1075
Query: 194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSN 249
IGA MPG++ EVK VG+ VK N L++ MK ET I A DGV K + N
Sbjct: 1076 NPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVN 1131
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 110/236 (46%), Gaps = 38/236 (16%)
Query: 51 KDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHT---------LDRK 101
+ V+ + K+ FP+SV +FF+G IG+P GF K LQ +L + T +D +
Sbjct: 897 QSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEYLEPVDFE 956
Query: 102 PECDLMMEDEFGPVDR----------------------------LPTRIFLNGPNIGEEF 133
+L+ E++ GPV L T F G GE
Sbjct: 957 KVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETV 1016
Query: 134 SCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSD 193
E G + +ISE +++G RT+++ NGQ R + I+D+N ++ KAD
Sbjct: 1017 EIEIDKGKRLIIKLETISEP-DENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKS 1075
Query: 194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSN 249
IGA MPG++ EVK VG+ VK N L++ MK ET I A DGV K + N
Sbjct: 1076 NPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVN 1131
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 110/236 (46%), Gaps = 38/236 (16%)
Query: 51 KDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHT---------LDRK 101
+ V+ + K+ FP+SV +FF+G IG+P GF K LQ +L + T +D +
Sbjct: 920 QSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEYLEPVDFE 979
Query: 102 PECDLMMEDEFGPVDR----------------------------LPTRIFLNGPNIGEEF 133
+L+ E++ GPV L T F G GE
Sbjct: 980 KVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETV 1039
Query: 134 SCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSD 193
E G + +ISE +++G RT+++ NGQ R + I+D+N ++ KAD
Sbjct: 1040 EIEIDKGKRLIIKLETISEP-DENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKS 1098
Query: 194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSN 249
IGA MPG++ EVK VG+ VK N L++ MK ET I A DGV K + N
Sbjct: 1099 NPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVN 1154
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 110/236 (46%), Gaps = 38/236 (16%)
Query: 51 KDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHT---------LDRK 101
+ V+ + K+ FP+SV +FF+G IG+P GF K LQ +L + T +D +
Sbjct: 920 QSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEYLEPVDFE 979
Query: 102 PECDLMMEDEFGPVDR----------------------------LPTRIFLNGPNIGEEF 133
+L+ E++ GPV L T F G GE
Sbjct: 980 KVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETV 1039
Query: 134 SCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSD 193
E G + +ISE +++G RT+++ NGQ R + I+D+N ++ KAD
Sbjct: 1040 EIEIDKGKRLIIKLETISEP-DENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKS 1098
Query: 194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSN 249
IGA MPG++ EVK VG+ VK N L++ MK ET I A DGV K + N
Sbjct: 1099 NPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVN 1154
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 110/236 (46%), Gaps = 38/236 (16%)
Query: 51 KDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHT---------LDRK 101
+ V+ + K+ FP+SV +FF+G IG+P GF K LQ +L + T +D +
Sbjct: 920 QSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEYLEPVDFE 979
Query: 102 PECDLMMEDEFGPVDR----------------------------LPTRIFLNGPNIGEEF 133
+L+ E++ GPV L T F G GE
Sbjct: 980 KVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETV 1039
Query: 134 SCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSD 193
E G + +ISE +++G RT+++ NGQ R + I+D+N ++ KAD
Sbjct: 1040 EIEIDKGKRLIIKLETISEP-DENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKS 1098
Query: 194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSN 249
IGA MPG++ EVK VG+ VK N L++ MK ET I A DGV K + N
Sbjct: 1099 NPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVN 1154
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 110/236 (46%), Gaps = 38/236 (16%)
Query: 51 KDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHT---------LDRK 101
+ V+ + K+ FP+SV +FF+G IG+P GF K LQ +L + T +D +
Sbjct: 920 QSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEYLEPVDFE 979
Query: 102 PECDLMMEDEFGPVDR----------------------------LPTRIFLNGPNIGEEF 133
+L+ E++ GPV L T F G GE
Sbjct: 980 KVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETV 1039
Query: 134 SCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSD 193
E G + +ISE +++G RT+++ NGQ R + I+D+N ++ KAD
Sbjct: 1040 EIEIDKGKRLIIKLETISEP-DENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKS 1098
Query: 194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSN 249
IGA MPG++ EVK VG+ VK N L++ MK ET I A DGV K + N
Sbjct: 1099 NPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVN 1154
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 105/234 (44%), Gaps = 43/234 (18%)
Query: 48 IKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHTLDRKP----- 102
+ DV+ ++ FP+SV + +G +G+P G+P+ LQ+K L K +T+ +P
Sbjct: 911 LTVADVVSPDREVSFPESVVSMLKGDLGQPPSGWPEALQKKALKGEKPYTV--RPGSLLK 968
Query: 103 ECDL----------------------------------MMEDEFGPVDRLPTRIFLNGPN 128
E DL + D +GPV LPT + G
Sbjct: 969 EADLDAERKVIEKKLEREVSDFEFASYLMYPKVFTDFALASDTYGPVSVLPTPAYFYGLA 1028
Query: 129 IGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQ-AKKLKLR 187
GEE + + G T + ++S + G TVFF NGQ R + + D+ A +R
Sbjct: 1029 DGEELFADIEKGKTLVIVNQAVSA-TDSQGMVTVFFELNGQPRRIKVPDRAHGATGAAVR 1087
Query: 188 SKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADG 241
KA+ A +GAPMPG I V GQ V DVL+ + MK ET IHA DG
Sbjct: 1088 RKAEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDG 1141
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 105/234 (44%), Gaps = 43/234 (18%)
Query: 48 IKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHTLDRKP----- 102
+ DV+ ++ FP+SV + +G +G+P G+P+ LQ+K L K +T+ +P
Sbjct: 911 LTVADVVSPDREVSFPESVVSMLKGDLGQPPSGWPEALQKKALKGEKPYTV--RPGSLLK 968
Query: 103 ECDL----------------------------------MMEDEFGPVDRLPTRIFLNGPN 128
E DL + D +GPV LPT + G
Sbjct: 969 EADLDAERKVIEKKLEREVSDFEFASYLMYPKVFTDFALASDTYGPVSVLPTPAYFYGLA 1028
Query: 129 IGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQ-AKKLKLR 187
GEE + + G T + ++S + G TVFF NGQ R + + D+ A +R
Sbjct: 1029 DGEELFADIEKGKTLVIVNQAVSA-TDSQGMVTVFFELNGQPRRIKVPDRAHGATGAAVR 1087
Query: 188 SKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADG 241
KA+ A +GAPMPG I V GQ V DVL+ + MK ET IHA DG
Sbjct: 1088 RKAEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDG 1141
>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|C Chain C, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|E Chain E, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|G Chain G, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|I Chain I, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|K Chain K, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 681
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 173 VLIRDKNQAKKLKLR-SKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKT 231
V +R QA+ +L K DT+ + PMPG I++V +VGQ+V++ L + MK
Sbjct: 589 VHVRTPRQAELARLMPEKLPPDTSKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAMKM 648
Query: 232 ETLIHASADGV 242
E ++ A GV
Sbjct: 649 ENILRAEKKGV 659
>pdb|1DCZ|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s)
pdb|1DD2|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s)
Length = 77
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADG-VHKV 245
GEI AP+ G + ++ K G VK ++V+ MK ET I+A DG V KV
Sbjct: 9 GEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKV 59
>pdb|2D5D|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2D5D|B Chain B, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2EVB|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form I
pdb|2EJF|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJF|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJG|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
pdb|2EJG|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
Length = 74
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 198 IGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHK 244
+ APMPG ++ V +VG +V+ L+V+ MK E I + DGV K
Sbjct: 8 VSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVK 54
>pdb|2EJM|A Chain A, Solution Structure Of Ruh-072, An Apo-Biotnyl Domain Form
Human Acetyl Coenzyme A Carboxylase
Length = 99
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 28/52 (53%)
Query: 193 DTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHK 244
+T G APM G I +V K G +VK D L+VM MK E I + DG K
Sbjct: 12 ETQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVK 63
>pdb|3U9S|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|C Chain C, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|E Chain E, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|G Chain G, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|I Chain I, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|K Chain K, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9T|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Free Enzyme
Length = 655
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKV 245
G + APM G+I+ V + GQ V+ L+V+ MK E I A GV K
Sbjct: 583 GGLSAPMNGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKA 632
>pdb|1O78|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (1.3s)
[10-48] Deletion Mutant
Length = 84
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADG-VHKV 245
GEI AP+ G + ++ K G VK ++V+ MK ET I+A DG V KV
Sbjct: 16 GEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKV 66
>pdb|2IGN|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGO|A Chain A, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|B Chain B, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|D Chain D, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|C Chain C, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|E Chain E, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|F Chain F, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|H Chain H, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|G Chain G, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|3LSM|A Chain A, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3LSM|B Chain B, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3PL8|A Chain A, Pyranose 2-Oxidase H167a Complex With
3-Deoxy-3-Fluoro-Beta-D-Glucose
Length = 623
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 14/109 (12%)
Query: 159 ERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAG--------------EIGAPMPG 204
ER V N ++ S+ I D + ++++ TAG ++G P P
Sbjct: 284 ERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPA 343
Query: 205 NIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN 253
N E+ +G + + ++ +VM TE + +D + L Y+
Sbjct: 344 NPPELLPSLGSYITEQSLVFCQTVMSTELIDSVKSDMTIRGTPGELTYS 392
>pdb|3K4M|A Chain A, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|B Chain B, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|C Chain C, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|D Chain D, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|E Chain E, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|F Chain F, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|G Chain G, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|H Chain H, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
Length = 623
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 14/109 (12%)
Query: 159 ERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAG--------------EIGAPMPG 204
ER V N ++ S+ I D + ++++ TAG ++G P P
Sbjct: 284 ERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPA 343
Query: 205 NIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN 253
N E+ +G + + ++ +VM TE + +D + L Y+
Sbjct: 344 NPPELLPSLGSYITEQSLVFCQTVMSTELIDSVKSDMTIRGTPGELTYS 392
>pdb|3K4J|A Chain A, Pyranose 2-Oxidase H450q Mutant
Length = 623
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 14/109 (12%)
Query: 159 ERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAG--------------EIGAPMPG 204
ER V N ++ S+ I D + ++++ TAG ++G P P
Sbjct: 284 ERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPA 343
Query: 205 NIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN 253
N E+ +G + + ++ +VM TE + +D + L Y+
Sbjct: 344 NPPELLPSLGSYITEQSLVFCQTVMSTELIDSVKSDMTIRGTPGELTYS 392
>pdb|3FDY|A Chain A, Pyranose 2-Oxidase Thermostable Triple Mutant,
T169gE542KV546C
Length = 623
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 14/109 (12%)
Query: 159 ERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAG--------------EIGAPMPG 204
ER V N ++ S+ I D + ++++ TAG ++G P P
Sbjct: 284 ERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPA 343
Query: 205 NIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN 253
N E+ +G + + ++ +VM TE + +D + L Y+
Sbjct: 344 NPPELLPSLGSYITEQSLVFCQTVMSTELIDSVKSDMTIRGTPGELTYS 392
>pdb|1TT0|A Chain A, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|B Chain B, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|C Chain C, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|D Chain D, Crystal Structure Of Pyranose 2-Oxidase
pdb|2IGK|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase
Length = 623
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 14/109 (12%)
Query: 159 ERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAG--------------EIGAPMPG 204
ER V N ++ S+ I D + ++++ TAG ++G P P
Sbjct: 284 ERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPA 343
Query: 205 NIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN 253
N E+ +G + + ++ +VM TE + +D + L Y+
Sbjct: 344 NPPELLPSLGSYITEQSLVFCQTVMSTELIDSVKSDMTIRGTPGELTYS 392
>pdb|3K4C|A Chain A, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|B Chain B, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|C Chain C, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|D Chain D, Pyranose 2-Oxidase H167aT169G MUTANT
Length = 623
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 14/109 (12%)
Query: 159 ERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAG--------------EIGAPMPG 204
ER V N ++ S+ I D + ++++ TAG ++G P P
Sbjct: 284 ERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPA 343
Query: 205 NIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN 253
N E+ +G + + ++ +VM TE + +D + L Y+
Sbjct: 344 NPPELLPSLGSYITEQSLVFCQTVMSTELIDSVKSDMTIRGTPGELTYS 392
>pdb|3BLY|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542kL537W
Length = 623
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 14/109 (12%)
Query: 159 ERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAG--------------EIGAPMPG 204
ER V N ++ S+ I D + ++++ TAG ++G P P
Sbjct: 284 ERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPA 343
Query: 205 NIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN 253
N E+ +G + + ++ +VM TE + +D + L Y+
Sbjct: 344 NPPELLPSLGSYITEQSLVFCQTVMSTELIDSVKSDMTIRGTPGELTYS 392
>pdb|2IGM|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
Length = 623
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 14/109 (12%)
Query: 159 ERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAG--------------EIGAPMPG 204
ER V N ++ S+ I D + ++++ TAG ++G P P
Sbjct: 284 ERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPA 343
Query: 205 NIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN 253
N E+ +G + + ++ +VM TE + +D + L Y+
Sbjct: 344 NPPELLPSLGSYITEQSLVFCQTVMSTELIDSVKSDMTIRGTPGELTYS 392
>pdb|3K4B|A Chain A, Pyranose 2-Oxidase T169s Mutant
pdb|3LSK|A Chain A, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|B Chain B, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|C Chain C, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|D Chain D, Pyranose 2-Oxidase T169s Acetate Complex
Length = 623
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 14/109 (12%)
Query: 159 ERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAG--------------EIGAPMPG 204
ER V N ++ S+ I D + ++++ TAG ++G P P
Sbjct: 284 ERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPA 343
Query: 205 NIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN 253
N E+ +G + + ++ +VM TE + +D + L Y+
Sbjct: 344 NPPELLPSLGSYITEQSLVFCQTVMSTELIDSVKSDMTIRGTPGELTYS 392
>pdb|3LSH|A Chain A, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|B Chain B, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|C Chain C, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|D Chain D, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSI|A Chain A, Pyranose 2-Oxidase T169a, Tetragonal
pdb|3LSI|B Chain B, Pyranose 2-Oxidase T169a, Tetragonal
Length = 623
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 14/109 (12%)
Query: 159 ERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAG--------------EIGAPMPG 204
ER V N ++ S+ I D + ++++ TAG ++G P P
Sbjct: 284 ERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPA 343
Query: 205 NIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN 253
N E+ +G + + ++ +VM TE + +D + L Y+
Sbjct: 344 NPPELLPSLGSYITEQSLVFCQTVMSTELIDSVKSDMTIRGTPGELTYS 392
>pdb|3BG6|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|B Chain B, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|C Chain C, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|D Chain D, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|E Chain E, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|F Chain F, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|G Chain G, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|H Chain H, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
Length = 623
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 14/109 (12%)
Query: 159 ERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAG--------------EIGAPMPG 204
ER V N ++ S+ I D + ++++ TAG ++G P P
Sbjct: 284 ERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPA 343
Query: 205 NIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN 253
N E+ +G + + ++ +VM TE + +D + L Y+
Sbjct: 344 NPPELLPSLGSYITEQSLVFCQTVMSTELIDSVKSDMTIRGTPGELTYS 392
>pdb|3K4K|A Chain A, Pyranose 2-Oxidase F454n Mutant
pdb|3K4L|A Chain A, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
pdb|3K4L|B Chain B, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
Length = 623
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 14/109 (12%)
Query: 159 ERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAG--------------EIGAPMPG 204
ER V N ++ S+ I D + ++++ TAG ++G P P
Sbjct: 284 ERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPA 343
Query: 205 NIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN 253
N E+ +G + + ++ +VM TE + +D + L Y+
Sbjct: 344 NPPELLPSLGSYITEQSLVFCQTVMSTELIDSVKSDMTIRGTPGELTYS 392
>pdb|3BG7|A Chain A, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|B Chain B, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|C Chain C, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|D Chain D, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|E Chain E, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|F Chain F, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|G Chain G, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|H Chain H, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
Length = 623
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 14/109 (12%)
Query: 159 ERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAG--------------EIGAPMPG 204
ER V N ++ S+ I D + ++++ TAG ++G P P
Sbjct: 284 ERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPA 343
Query: 205 NIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN 253
N E+ +G + + ++ +VM TE + +D + L Y+
Sbjct: 344 NPPELLPSLGSYITEQSLVFCQTVMSTELIDSVKSDMTIRGTPGELTYS 392
>pdb|3K4N|A Chain A, Pyranose 2-Oxidase F454aS455AY456A MUTANT
pdb|3K4N|B Chain B, Pyranose 2-Oxidase F454aS455AY456A MUTANT
Length = 623
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 14/109 (12%)
Query: 159 ERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAG--------------EIGAPMPG 204
ER V N ++ S+ I D + ++++ TAG ++G P P
Sbjct: 284 ERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPA 343
Query: 205 NIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN 253
N E+ +G + + ++ +VM TE + +D + L Y+
Sbjct: 344 NPPELLPSLGSYITEQSLVFCQTVMSTELIDSVKSDMTIRGTPGELTYS 392
>pdb|2F5V|A Chain A, Reaction Geometry And Thermostability Mutant Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp
Length = 595
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 14/109 (12%)
Query: 159 ERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAG--------------EIGAPMPG 204
ER V N ++ S+ I D + ++++ TAG ++G P P
Sbjct: 256 ERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPT 315
Query: 205 NIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN 253
N E+ +G + + ++ +VM TE + +D + L Y+
Sbjct: 316 NPPELLPSLGSYITEQSLVFCQTVMSTELIDSVKSDMTIRGTPGELTYS 364
>pdb|2F6C|A Chain A, Reaction Geometry And Thermostability Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp.,
Thermostability Mutant E542k
Length = 595
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 14/109 (12%)
Query: 159 ERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAG--------------EIGAPMPG 204
ER V N ++ S+ I D + ++++ TAG ++G P P
Sbjct: 256 ERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPT 315
Query: 205 NIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN 253
N E+ +G + + ++ +VM TE + +D + L Y+
Sbjct: 316 NPPELLPSLGSYITEQSLVFCQTVMSTELIDSVKSDMTIRGTPGELTYS 364
>pdb|4DK0|A Chain A, Crystal Structure Of Maca From Actinobacillus
Actinomycetemcomitans
Length = 369
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 197 EIGAPMPGNIIEVKAKVGQQVKKNDVL 223
++GA + G I ++ K+GQQVKK D+L
Sbjct: 34 DVGAQVSGKITKLYVKLGQQVKKGDLL 60
>pdb|4DK1|A Chain A, Crystal Structure Of Maca-Mexa Chimeric Protein,
Containing The Pseudomonas Aeruginosa Mexa Alpha-Hairpin
Domain.
pdb|4DK1|B Chain B, Crystal Structure Of Maca-Mexa Chimeric Protein,
Containing The Pseudomonas Aeruginosa Mexa Alpha-Hairpin
Domain.
pdb|4DK1|C Chain C, Crystal Structure Of Maca-Mexa Chimeric Protein,
Containing The Pseudomonas Aeruginosa Mexa Alpha-Hairpin
Domain.
pdb|4DK1|D Chain D, Crystal Structure Of Maca-Mexa Chimeric Protein,
Containing The Pseudomonas Aeruginosa Mexa Alpha-Hairpin
Domain
Length = 341
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 197 EIGAPMPGNIIEVKAKVGQQVKKNDVL 223
++GA + G I ++ K+GQQVKK D+L
Sbjct: 34 DVGAQVSGKITKLYVKLGQQVKKGDLL 60
>pdb|1YCF|A Chain A, Oxidized (Di-Ferric) Fpra From Moorella Thermoacetica
pdb|1YCF|B Chain B, Oxidized (Di-Ferric) Fpra From Moorella Thermoacetica
pdb|1YCF|C Chain C, Oxidized (Di-Ferric) Fpra From Moorella Thermoacetica
pdb|1YCF|D Chain D, Oxidized (Di-Ferric) Fpra From Moorella Thermoacetica
pdb|1YCG|A Chain A, X-Ray Structures Of Moorella Thermoacetica Fpra. Novel
Diiron Site Structure And Mechanistic Insights Into A
Scavenging Nitric Oxide Reductase
pdb|1YCG|B Chain B, X-Ray Structures Of Moorella Thermoacetica Fpra. Novel
Diiron Site Structure And Mechanistic Insights Into A
Scavenging Nitric Oxide Reductase
pdb|1YCG|C Chain C, X-Ray Structures Of Moorella Thermoacetica Fpra. Novel
Diiron Site Structure And Mechanistic Insights Into A
Scavenging Nitric Oxide Reductase
pdb|1YCG|D Chain D, X-Ray Structures Of Moorella Thermoacetica Fpra. Novel
Diiron Site Structure And Mechanistic Insights Into A
Scavenging Nitric Oxide Reductase
pdb|1YCH|A Chain A, X-Ray Crystal Structures Of Moorella Thermoacetica Fpra.
Novel Diiron Site Structure And Mechanistic Insights
Into A Scavenging Nitric Oxide Reductase
pdb|1YCH|B Chain B, X-Ray Crystal Structures Of Moorella Thermoacetica Fpra.
Novel Diiron Site Structure And Mechanistic Insights
Into A Scavenging Nitric Oxide Reductase
pdb|1YCH|C Chain C, X-Ray Crystal Structures Of Moorella Thermoacetica Fpra.
Novel Diiron Site Structure And Mechanistic Insights
Into A Scavenging Nitric Oxide Reductase
pdb|1YCH|D Chain D, X-Ray Crystal Structures Of Moorella Thermoacetica Fpra.
Novel Diiron Site Structure And Mechanistic Insights
Into A Scavenging Nitric Oxide Reductase
Length = 398
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 172 SVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM-- 229
+++ + ++ +K+ L K + + G I PG IIE A+ + K +I M
Sbjct: 204 NLITKKLDEIQKINLAIKTIAPSHGIIWRKDPGRIIEAYARWAEGQGKAKAVIAYDTMWL 263
Query: 230 KTETLIHASADGV 242
TE + HA DG+
Sbjct: 264 STEKMAHALMDGL 276
>pdb|1TZL|A Chain A, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|B Chain B, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|C Chain C, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|D Chain D, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|E Chain E, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|F Chain F, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|G Chain G, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|H Chain H, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp
Length = 622
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 14/109 (12%)
Query: 159 ERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAG--------------EIGAPMPG 204
ER V N ++ S+ I D + ++++ TAG ++G P P
Sbjct: 283 ERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPT 342
Query: 205 NIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN 253
N E+ +G + + ++ +V TE + +D + L Y+
Sbjct: 343 NPPELLPSLGSYITEQSLVFCQTVXSTELIDSVKSDXTIRGTPGELTYS 391
>pdb|1Z6H|A Chain A, Solution Structure Of Bacillus Subtilis Blap Biotinylated-
Form
pdb|1Z7T|A Chain A, Solution Structure Of Bacillus Subtilis Blap Apo-Form
pdb|2B8F|A Chain A, Solution Structure Of Bacillus Subtilis Blap Apo Form
(Energy Minimized Mean Structure)
pdb|2B8G|A Chain A, Solution Structure Of Bacillus Subtilis Blap Biotinylated-
Form (Energy Minimized Mean Structure)
Length = 72
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 198 IGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHK 244
+ M GN+ +V K G Q++K + ++ MK E I A G+ K
Sbjct: 2 VSIQMAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVK 48
>pdb|3GM8|A Chain A, Crystal Structure Of A Beta-glycosidase From Bacteroides
Vulgatus
Length = 801
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 181 AKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDV 222
K LK++ D T G +GA +P +++ + K+ + + N +
Sbjct: 283 GKSLKIKGVCDHHTVGAVGAAVPDDLLHYRLKLLKDMGCNAI 324
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,466,509
Number of Sequences: 62578
Number of extensions: 345297
Number of successful extensions: 876
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 801
Number of HSP's gapped (non-prelim): 68
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)