Query psy2807
Match_columns 288
No_of_seqs 320 out of 2272
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 17:25:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2807.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2807hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1038 PycA Pyruvate carboxyl 100.0 9.3E-61 2E-65 479.3 19.4 241 22-263 870-1148(1149)
2 KOG0369|consensus 100.0 4.3E-57 9.2E-62 446.4 19.4 243 22-264 897-1176(1176)
3 TIGR01235 pyruv_carbox pyruvat 100.0 3.2E-53 6.9E-58 452.1 22.9 242 21-263 864-1143(1143)
4 PRK12999 pyruvate carboxylase; 100.0 1.6E-52 3.5E-57 447.8 23.1 243 21-264 866-1146(1146)
5 PRK14042 pyruvate carboxylase 100.0 4.1E-52 8.8E-57 418.6 20.4 231 21-263 329-594 (596)
6 PRK09282 pyruvate carboxylase 100.0 5E-48 1.1E-52 390.2 20.7 227 21-264 329-592 (592)
7 TIGR01108 oadA oxaloacetate de 100.0 1.9E-46 4E-51 377.9 17.2 221 21-259 324-582 (582)
8 PRK14040 oxaloacetate decarbox 100.0 2.3E-45 5E-50 370.5 18.6 224 21-263 330-593 (593)
9 PF02436 PYC_OADA: Conserved c 100.0 8.1E-33 1.7E-37 244.8 2.2 121 21-147 39-196 (196)
10 PRK12330 oxaloacetate decarbox 99.9 1.7E-24 3.7E-29 214.6 4.2 141 21-177 332-497 (499)
11 PRK14041 oxaloacetate decarbox 99.9 3.4E-24 7.4E-29 211.4 2.2 95 21-128 328-441 (467)
12 COG5016 Pyruvate/oxaloacetate 99.9 5.6E-24 1.2E-28 202.9 2.4 98 21-131 332-451 (472)
13 PRK12331 oxaloacetate decarbox 99.9 7.8E-24 1.7E-28 208.3 2.1 94 21-127 332-444 (448)
14 PRK12581 oxaloacetate decarbox 99.9 1.2E-23 2.7E-28 206.9 1.6 94 21-127 341-453 (468)
15 COG4770 Acetyl/propionyl-CoA c 99.9 9.8E-22 2.1E-26 193.7 14.3 235 14-264 365-645 (645)
16 COG0511 AccB Biotin carboxyl c 99.8 7.1E-21 1.5E-25 160.5 8.9 71 194-264 69-140 (140)
17 PRK05641 putative acetyl-CoA c 99.8 8.2E-19 1.8E-23 150.0 16.6 124 132-263 3-153 (153)
18 KOG0238|consensus 99.8 1.4E-19 3E-24 176.6 9.8 245 14-263 362-670 (670)
19 PRK06549 acetyl-CoA carboxylas 99.8 6.3E-18 1.4E-22 140.8 14.2 70 194-263 60-130 (130)
20 PRK05889 putative acetyl-CoA c 99.8 5.9E-18 1.3E-22 126.6 10.0 68 196-263 3-71 (71)
21 PRK08225 acetyl-CoA carboxylas 99.7 1.8E-16 3.8E-21 118.0 9.5 68 196-263 2-70 (70)
22 PF00364 Biotin_lipoyl: Biotin 99.7 2.4E-16 5.1E-21 118.9 8.9 66 197-262 2-74 (74)
23 PRK06748 hypothetical protein; 99.7 9.9E-16 2.1E-20 118.3 10.5 70 197-266 6-77 (83)
24 TIGR00531 BCCP acetyl-CoA carb 99.6 3.4E-15 7.3E-20 128.2 9.8 69 195-263 80-156 (156)
25 PRK07051 hypothetical protein; 99.6 1.7E-14 3.8E-19 110.4 9.8 68 196-263 4-79 (80)
26 PLN02983 biotin carboxyl carri 99.6 1.8E-14 3.9E-19 131.9 10.3 70 195-264 197-274 (274)
27 PRK06302 acetyl-CoA carboxylas 99.5 2.9E-14 6.2E-19 122.3 9.9 69 195-263 79-155 (155)
28 cd06850 biotinyl_domain The bi 99.5 1.1E-13 2.5E-18 100.0 9.4 66 197-262 1-67 (67)
29 PRK14875 acetoin dehydrogenase 99.4 4.8E-13 1E-17 125.7 10.7 68 203-270 16-84 (371)
30 TIGR02712 urea_carbox urea car 99.4 8E-13 1.7E-17 143.7 10.6 70 194-263 1131-1201(1201)
31 cd06663 Biotinyl_lipoyl_domain 99.4 5.7E-12 1.2E-16 93.8 9.2 60 203-262 13-73 (73)
32 PTZ00144 dihydrolipoamide succ 99.3 7.6E-12 1.6E-16 122.5 9.7 68 198-265 52-121 (418)
33 PLN02226 2-oxoglutarate dehydr 99.3 7E-12 1.5E-16 123.9 9.1 62 203-264 105-167 (463)
34 PRK05704 dihydrolipoamide succ 99.2 8.4E-11 1.8E-15 115.1 9.5 63 203-265 16-79 (407)
35 TIGR01347 sucB 2-oxoglutarate 99.1 4.4E-10 9.5E-15 109.9 9.6 63 203-265 14-77 (403)
36 PRK11854 aceF pyruvate dehydro 99.1 6.2E-10 1.3E-14 114.5 10.7 63 203-265 14-77 (633)
37 PRK11854 aceF pyruvate dehydro 99.0 4.2E-10 9E-15 115.7 8.5 63 202-264 217-280 (633)
38 COG0508 AceF Pyruvate/2-oxoglu 99.0 9.7E-10 2.1E-14 107.5 9.4 65 201-265 13-79 (404)
39 TIGR01348 PDHac_trf_long pyruv 99.0 2E-09 4.2E-14 109.1 9.6 66 199-264 9-75 (546)
40 TIGR01348 PDHac_trf_long pyruv 99.0 1.6E-09 3.5E-14 109.7 8.4 62 203-264 129-191 (546)
41 PLN02528 2-oxoisovalerate dehy 98.9 3E-09 6.4E-14 104.5 9.5 63 201-263 9-73 (416)
42 KOG0368|consensus 98.9 9.6E-09 2.1E-13 110.5 12.0 71 192-263 682-753 (2196)
43 TIGR02927 SucB_Actino 2-oxoglu 98.9 4E-09 8.7E-14 107.7 9.0 61 203-263 149-210 (590)
44 PRK11855 dihydrolipoamide acet 98.9 4E-09 8.6E-14 106.8 8.7 63 203-265 132-195 (547)
45 cd06849 lipoyl_domain Lipoyl d 98.9 1.7E-08 3.7E-13 72.1 9.0 63 200-262 11-74 (74)
46 PRK11855 dihydrolipoamide acet 98.9 9.2E-09 2E-13 104.2 10.2 62 203-264 15-77 (547)
47 PRK11856 branched-chain alpha- 98.7 3.7E-08 8E-13 96.4 9.3 62 203-264 16-78 (411)
48 TIGR01349 PDHac_trf_mito pyruv 98.7 6.6E-08 1.4E-12 95.5 8.6 61 203-263 13-75 (435)
49 PRK11892 pyruvate dehydrogenas 98.6 1E-07 2.2E-12 94.9 9.0 61 203-263 16-78 (464)
50 TIGR02927 SucB_Actino 2-oxoglu 98.6 1.5E-07 3.3E-12 96.2 8.9 62 203-264 16-78 (590)
51 PRK09783 copper/silver efflux 98.5 6.2E-07 1.3E-11 87.8 10.4 72 192-263 120-241 (409)
52 PLN02744 dihydrolipoyllysine-r 98.5 2.9E-07 6.3E-12 93.0 8.1 63 201-263 123-188 (539)
53 PRK13380 glycine cleavage syst 98.5 1.2E-07 2.5E-12 80.6 4.3 69 198-266 38-115 (144)
54 cd06848 GCS_H Glycine cleavage 98.4 4.2E-07 9.2E-12 71.7 6.2 54 201-254 26-80 (96)
55 KOG0559|consensus 98.4 1.1E-07 2.3E-12 90.6 2.7 62 203-264 86-148 (457)
56 TIGR00998 8a0101 efflux pump m 98.4 8.6E-07 1.9E-11 83.4 8.6 35 194-228 41-75 (334)
57 PRK10476 multidrug resistance 98.3 1.4E-06 3E-11 83.1 8.2 34 195-228 48-81 (346)
58 PRK10559 p-hydroxybenzoic acid 98.3 1.7E-06 3.6E-11 81.8 8.3 68 196-263 48-186 (310)
59 KOG0557|consensus 98.3 9.7E-07 2.1E-11 86.6 6.7 67 197-263 45-114 (470)
60 TIGR03077 not_gcvH glycine cle 98.3 1.2E-06 2.6E-11 71.3 5.5 51 203-253 29-80 (110)
61 TIGR01730 RND_mfp RND family e 98.3 2.2E-06 4.8E-11 79.4 7.8 70 195-264 26-167 (322)
62 PF13533 Biotin_lipoyl_2: Biot 98.3 1.5E-06 3.3E-11 60.7 4.7 35 196-230 3-37 (50)
63 PRK15030 multidrug efflux syst 98.2 3.9E-06 8.4E-11 81.7 8.2 68 195-262 65-206 (397)
64 PRK15136 multidrug efflux syst 98.2 4.7E-06 1E-10 81.2 8.4 35 194-228 60-94 (390)
65 PRK09578 periplasmic multidrug 98.2 4.8E-06 1E-10 80.5 8.2 69 195-263 63-205 (385)
66 PRK03598 putative efflux pump 98.2 4.9E-06 1.1E-10 78.8 7.6 33 196-228 44-76 (331)
67 PRK09859 multidrug efflux syst 98.1 6.8E-06 1.5E-10 79.6 8.2 69 195-263 61-203 (385)
68 PRK00624 glycine cleavage syst 98.1 8.9E-06 1.9E-10 66.6 6.2 65 202-266 30-103 (114)
69 PRK11578 macrolide transporter 98.0 1.3E-05 2.9E-10 77.0 7.9 34 195-228 61-94 (370)
70 TIGR00527 gcvH glycine cleavag 98.0 7E-06 1.5E-10 68.3 4.8 66 201-266 33-107 (127)
71 PRK01202 glycine cleavage syst 98.0 2E-05 4.3E-10 65.6 7.2 65 202-266 35-108 (127)
72 PRK11556 multidrug efflux syst 98.0 1.7E-05 3.7E-10 77.8 7.4 70 194-263 86-229 (415)
73 PF12700 HlyD_2: HlyD family s 97.8 2.3E-05 5.1E-10 72.8 5.1 34 194-228 20-53 (328)
74 TIGR02971 heterocyst_DevB ABC 97.8 6.6E-05 1.4E-09 70.7 8.1 33 196-228 14-49 (327)
75 TIGR03309 matur_yqeB selenium- 97.7 0.00021 4.6E-09 65.9 8.7 66 195-266 164-230 (256)
76 TIGR01843 type_I_hlyD type I s 97.5 0.00032 6.9E-09 67.6 8.4 33 195-227 43-75 (423)
77 PF01597 GCV_H: Glycine cleava 97.5 0.00029 6.3E-09 58.2 6.1 48 204-251 31-79 (122)
78 PRK06549 acetyl-CoA carboxylas 97.4 0.0012 2.7E-08 55.2 9.8 66 161-226 63-129 (130)
79 PRK12784 hypothetical protein; 97.4 0.00074 1.6E-08 51.4 7.5 69 196-264 6-76 (84)
80 KOG0558|consensus 97.4 0.00018 3.9E-09 68.8 4.6 60 204-263 79-139 (474)
81 PF13533 Biotin_lipoyl_2: Biot 97.2 0.00067 1.4E-08 47.3 5.0 33 233-265 3-36 (50)
82 COG1566 EmrA Multidrug resista 97.2 0.0012 2.5E-08 63.9 8.1 34 195-228 53-86 (352)
83 PRK05889 putative acetyl-CoA c 97.2 0.001 2.2E-08 49.4 6.0 34 194-227 38-71 (71)
84 PRK08225 acetyl-CoA carboxylas 97.2 0.00065 1.4E-08 50.1 4.8 33 195-227 38-70 (70)
85 PRK05641 putative acetyl-CoA c 97.2 0.0032 6.9E-08 54.1 9.5 67 159-226 84-152 (153)
86 PF13375 RnfC_N: RnfC Barrel s 97.0 0.0011 2.4E-08 53.1 4.5 45 204-249 39-83 (101)
87 COG0509 GcvH Glycine cleavage 97.0 0.0012 2.7E-08 55.1 4.8 51 202-252 37-88 (131)
88 PRK07051 hypothetical protein; 96.9 0.0015 3.3E-08 49.7 4.9 32 196-227 48-79 (80)
89 cd06252 M14_ASTE_ASPA_like_2 A 96.8 0.0048 1E-07 58.6 8.3 51 196-247 245-299 (316)
90 TIGR00999 8a0102 Membrane Fusi 96.7 0.0045 9.7E-08 56.1 6.9 54 198-256 91-147 (265)
91 COG0511 AccB Biotin carboxyl c 96.7 0.0018 4E-08 54.6 3.8 34 195-228 107-140 (140)
92 PRK06748 hypothetical protein; 96.6 0.0045 9.7E-08 48.0 5.0 33 196-228 43-75 (83)
93 PF13437 HlyD_3: HlyD family s 96.5 0.0085 1.9E-07 46.9 6.6 33 197-229 1-33 (105)
94 cd06253 M14_ASTE_ASPA_like_3 A 96.5 0.014 3E-07 55.1 8.9 65 195-262 229-297 (298)
95 PF00364 Biotin_lipoyl: Biotin 96.5 0.005 1.1E-07 46.1 4.7 32 195-226 43-74 (74)
96 PRK14040 oxaloacetate decarbox 96.4 0.016 3.5E-07 59.7 9.3 93 131-226 478-592 (593)
97 cd06254 M14_ASTE_ASPA_like_4 A 96.3 0.014 3E-07 54.7 7.9 52 195-247 223-276 (288)
98 COG3608 Predicted deacylase [G 96.3 0.0099 2.2E-07 57.0 6.9 58 195-253 256-320 (331)
99 PF00529 HlyD: HlyD family sec 96.3 0.0033 7.2E-08 57.8 3.5 32 197-228 3-34 (305)
100 TIGR02994 ectoine_eutE ectoine 96.3 0.018 4E-07 55.0 8.6 63 196-261 256-323 (325)
101 cd06251 M14_ASTE_ASPA_like_1 A 96.3 0.023 5E-07 53.2 8.9 63 196-261 220-285 (287)
102 cd06850 biotinyl_domain The bi 96.1 0.0095 2.1E-07 42.3 4.2 31 196-226 37-67 (67)
103 cd06250 M14_PaAOTO_like An unc 96.0 0.031 6.6E-07 54.2 8.6 65 195-262 289-358 (359)
104 TIGR01235 pyruv_carbox pyruvat 95.8 0.042 9E-07 60.7 9.7 94 161-264 1012-1107(1143)
105 PRK12999 pyruvate carboxylase; 95.7 0.043 9.3E-07 60.7 9.3 94 132-227 1042-1145(1146)
106 TIGR03794 NHPM_micro_HlyD NHPM 95.6 0.015 3.3E-07 56.9 5.0 35 194-228 57-91 (421)
107 PF09891 DUF2118: Uncharacteri 95.6 0.017 3.6E-07 49.5 4.5 53 198-250 83-136 (150)
108 PRK09282 pyruvate carboxylase 95.6 0.055 1.2E-06 55.8 9.1 69 159-227 522-591 (592)
109 PF05896 NQRA: Na(+)-transloca 95.6 0.016 3.6E-07 53.7 4.6 51 199-250 33-83 (257)
110 PRK06302 acetyl-CoA carboxylas 95.3 0.026 5.6E-07 48.5 4.6 33 195-227 123-155 (155)
111 TIGR01936 nqrA NADH:ubiquinone 95.2 0.023 4.9E-07 56.8 4.6 45 203-248 37-81 (447)
112 TIGR00531 BCCP acetyl-CoA carb 95.1 0.029 6.4E-07 48.2 4.4 33 195-227 124-156 (156)
113 PF13437 HlyD_3: HlyD family s 95.1 0.032 7E-07 43.6 4.3 31 234-264 1-32 (105)
114 cd06663 Biotinyl_lipoyl_domain 95.1 0.036 7.8E-07 40.7 4.3 32 195-226 42-73 (73)
115 cd06255 M14_ASTE_ASPA_like_5 A 95.0 0.085 1.9E-06 49.6 7.7 51 195-246 231-283 (293)
116 PRK14042 pyruvate carboxylase 94.9 0.12 2.6E-06 53.4 8.8 68 160-228 526-595 (596)
117 PRK05352 Na(+)-translocating N 94.8 0.035 7.6E-07 55.5 4.5 44 204-248 39-82 (448)
118 TIGR01000 bacteriocin_acc bact 94.7 0.038 8.3E-07 54.9 4.5 33 196-228 60-92 (457)
119 TIGR01730 RND_mfp RND family e 94.3 0.25 5.4E-06 45.7 8.8 35 195-229 134-168 (322)
120 PRK14875 acetoin dehydrogenase 94.3 0.07 1.5E-06 50.0 5.0 35 195-229 45-79 (371)
121 PF06898 YqfD: Putative stage 94.1 0.22 4.7E-06 48.7 8.2 75 162-244 162-245 (385)
122 PRK09439 PTS system glucose-sp 93.9 0.17 3.6E-06 44.3 6.3 97 161-263 22-124 (169)
123 PLN02983 biotin carboxyl carri 93.8 0.087 1.9E-06 49.1 4.6 33 195-227 241-273 (274)
124 COG2190 NagE Phosphotransferas 93.6 0.18 3.8E-06 43.6 5.8 28 201-228 83-110 (156)
125 TIGR01945 rnfC electron transp 93.6 0.08 1.7E-06 52.6 4.3 43 204-247 40-82 (435)
126 cd00210 PTS_IIA_glc PTS_IIA, P 93.4 0.25 5.5E-06 41.0 6.3 64 195-264 35-103 (124)
127 TIGR01108 oadA oxaloacetate de 93.4 0.21 4.5E-06 51.5 7.1 91 131-223 473-582 (582)
128 PRK09439 PTS system glucose-sp 93.3 0.61 1.3E-05 40.8 8.7 30 199-228 96-125 (169)
129 TIGR00998 8a0101 efflux pump m 93.2 0.12 2.5E-06 48.6 4.5 34 195-228 204-237 (334)
130 TIGR02876 spore_yqfD sporulati 93.1 0.62 1.3E-05 45.6 9.6 58 162-225 158-223 (382)
131 PLN02226 2-oxoglutarate dehydr 92.9 0.14 3E-06 51.4 4.7 34 195-228 134-167 (463)
132 PRK10476 multidrug resistance 92.7 0.15 3.2E-06 48.6 4.6 35 195-229 208-242 (346)
133 PRK15136 multidrug efflux syst 92.7 0.15 3.2E-06 49.8 4.6 32 196-227 216-247 (390)
134 PRK11578 macrolide transporter 92.7 0.34 7.4E-06 46.6 7.1 60 205-265 35-95 (370)
135 PRK11556 multidrug efflux syst 92.7 0.28 6E-06 48.3 6.5 60 205-265 61-121 (415)
136 COG2190 NagE Phosphotransferas 92.5 0.35 7.7E-06 41.7 6.1 96 160-263 6-109 (156)
137 PTZ00144 dihydrolipoamide succ 92.5 0.17 3.7E-06 50.2 4.8 35 195-229 87-121 (418)
138 TIGR02712 urea_carbox urea car 92.4 0.23 4.9E-06 55.4 6.1 69 159-227 1132-1201(1201)
139 TIGR00999 8a0102 Membrane Fusi 92.4 0.18 3.9E-06 45.6 4.4 13 163-175 92-104 (265)
140 COG1726 NqrA Na+-transporting 92.2 0.13 2.9E-06 49.8 3.5 42 206-250 40-83 (447)
141 COG0845 AcrA Membrane-fusion p 92.0 0.19 4.2E-06 46.1 4.2 32 197-228 68-99 (372)
142 PRK09859 multidrug efflux syst 92.0 0.38 8.2E-06 46.6 6.5 59 206-265 36-95 (385)
143 PRK10559 p-hydroxybenzoic acid 92.0 0.23 5.1E-06 46.9 4.8 33 195-227 154-186 (310)
144 PRK09578 periplasmic multidrug 91.9 0.4 8.7E-06 46.4 6.6 59 206-265 38-97 (385)
145 PF00358 PTS_EIIA_1: phosphoen 91.9 0.36 7.7E-06 40.5 5.3 63 194-263 38-106 (132)
146 KOG3373|consensus 91.9 0.11 2.3E-06 45.1 2.1 44 210-253 87-130 (172)
147 KOG0559|consensus 91.9 0.14 3E-06 49.7 3.1 33 196-228 116-148 (457)
148 PF04952 AstE_AspA: Succinylgl 91.8 0.68 1.5E-05 42.8 7.7 65 195-262 220-289 (292)
149 TIGR01843 type_I_hlyD type I s 91.8 0.24 5.3E-06 47.6 4.8 33 195-227 271-304 (423)
150 PRK09783 copper/silver efflux 91.8 0.24 5.1E-06 48.7 4.8 33 196-228 210-242 (409)
151 PRK03598 putative efflux pump 91.7 0.32 6.9E-06 46.0 5.4 35 195-229 203-237 (331)
152 PRK05035 electron transport co 91.7 0.16 3.4E-06 53.5 3.6 43 204-247 46-88 (695)
153 cd06849 lipoyl_domain Lipoyl d 91.7 0.32 6.8E-06 33.8 4.1 31 196-226 44-74 (74)
154 PF00358 PTS_EIIA_1: phosphoen 91.6 0.3 6.5E-06 41.0 4.5 28 201-228 80-107 (132)
155 TIGR03794 NHPM_micro_HlyD NHPM 91.6 0.4 8.8E-06 47.0 6.2 32 196-227 254-285 (421)
156 COG4656 RnfC Predicted NADH:ub 91.6 0.19 4.1E-06 50.9 3.8 39 207-247 45-83 (529)
157 COG4072 Uncharacterized protei 91.2 0.44 9.6E-06 40.3 5.0 51 196-246 92-143 (161)
158 PRK15030 multidrug efflux syst 90.9 0.56 1.2E-05 45.7 6.3 56 210-266 44-100 (397)
159 TIGR02971 heterocyst_DevB ABC 90.8 0.36 7.8E-06 45.4 4.8 34 232-265 13-50 (327)
160 PF12700 HlyD_2: HlyD family s 90.7 0.3 6.6E-06 45.2 4.1 38 224-264 15-53 (328)
161 TIGR01995 PTS-II-ABC-beta PTS 89.8 1.3 2.8E-05 46.1 8.2 20 209-228 548-567 (610)
162 PRK05704 dihydrolipoamide succ 89.6 0.51 1.1E-05 46.6 4.9 35 195-229 45-79 (407)
163 PF01551 Peptidase_M23: Peptid 88.8 0.98 2.1E-05 34.7 5.1 59 196-263 14-73 (96)
164 COG4770 Acetyl/propionyl-CoA c 88.6 0.82 1.8E-05 46.9 5.5 68 160-227 576-644 (645)
165 TIGR01347 sucB 2-oxoglutarate 88.6 0.69 1.5E-05 45.7 5.0 35 195-229 43-77 (403)
166 PRK10255 PTS system N-acetyl g 88.2 1.1 2.4E-05 46.9 6.4 64 197-263 500-602 (648)
167 COG1038 PycA Pyruvate carboxyl 88.2 1.5 3.2E-05 47.0 7.2 33 195-227 1116-1148(1149)
168 PRK09824 PTS system beta-gluco 88.1 1.8 4E-05 45.1 7.9 20 209-228 564-583 (627)
169 COG1566 EmrA Multidrug resista 87.5 0.61 1.3E-05 45.3 3.8 32 195-226 208-239 (352)
170 PRK10255 PTS system N-acetyl g 87.3 3.3 7.2E-05 43.4 9.3 20 209-228 584-603 (648)
171 COG0508 AceF Pyruvate/2-oxoglu 87.3 0.81 1.8E-05 45.2 4.6 35 195-229 45-79 (404)
172 TIGR01000 bacteriocin_acc bact 86.8 1.3 2.8E-05 44.1 5.7 34 233-266 60-94 (457)
173 PF07831 PYNP_C: Pyrimidine nu 86.8 0.76 1.6E-05 34.7 3.2 29 198-228 27-55 (75)
174 PRK09824 PTS system beta-gluco 86.5 1.3 2.9E-05 46.2 5.8 21 243-263 561-582 (627)
175 PRK05305 phosphatidylserine de 86.2 2.5 5.4E-05 37.8 6.7 63 193-256 51-115 (206)
176 PRK12784 hypothetical protein; 85.4 1.2 2.5E-05 34.2 3.5 33 234-266 7-40 (84)
177 KOG0369|consensus 84.5 2.7 5.9E-05 44.2 6.8 93 132-227 1072-1175(1176)
178 PLN02528 2-oxoisovalerate dehy 83.3 1.8 3.9E-05 42.9 4.9 34 195-228 41-74 (416)
179 PRK11856 branched-chain alpha- 82.5 2 4.3E-05 42.2 4.8 35 196-230 46-80 (411)
180 TIGR00830 PTBA PTS system, glu 82.5 8.3 0.00018 31.9 7.8 63 195-263 35-102 (121)
181 TIGR01995 PTS-II-ABC-beta PTS 82.1 3.4 7.3E-05 43.0 6.5 65 194-264 498-567 (610)
182 TIGR00830 PTBA PTS system, glu 81.6 1.4 3.1E-05 36.4 3.0 29 200-228 75-103 (121)
183 COG0845 AcrA Membrane-fusion p 81.5 4.3 9.3E-05 37.1 6.5 43 221-264 56-99 (372)
184 PRK05305 phosphatidylserine de 81.0 4.3 9.3E-05 36.3 6.1 59 199-262 145-205 (206)
185 TIGR01349 PDHac_trf_mito pyruv 80.6 2.4 5.1E-05 42.3 4.7 34 196-229 43-77 (435)
186 PRK03934 phosphatidylserine de 80.1 11 0.00024 35.1 8.7 62 194-255 68-151 (265)
187 cd00210 PTS_IIA_glc PTS_IIA, P 79.6 1.9 4.1E-05 35.8 3.1 28 200-227 75-102 (124)
188 TIGR03309 matur_yqeB selenium- 78.9 2.5 5.4E-05 39.4 3.9 40 231-271 163-203 (256)
189 TIGR00164 PS_decarb_rel phosph 78.6 7.3 0.00016 34.3 6.7 62 193-255 32-95 (189)
190 smart00878 Biotin_carb_C Bioti 78.4 0.32 6.9E-06 39.3 -1.8 58 15-77 31-94 (107)
191 TIGR00164 PS_decarb_rel phosph 77.1 7.9 0.00017 34.1 6.4 55 203-262 129-185 (189)
192 PF02785 Biotin_carb_C: Biotin 76.9 0.12 2.6E-06 41.8 -4.7 60 13-77 29-94 (107)
193 PF02749 QRPTase_N: Quinolinat 76.5 3.3 7.1E-05 31.9 3.4 25 204-228 44-68 (88)
194 PRK11892 pyruvate dehydrogenas 72.1 5 0.00011 40.4 4.3 33 196-228 46-79 (464)
195 PLN02744 dihydrolipoyllysine-r 67.2 6.2 0.00013 40.5 3.8 34 195-228 155-189 (539)
196 TIGR02645 ARCH_P_rylase putati 66.8 8.5 0.00018 39.1 4.7 33 196-228 414-470 (493)
197 PRK04350 thymidine phosphoryla 65.4 9.3 0.0002 38.8 4.7 33 196-228 406-462 (490)
198 TIGR02643 T_phosphoryl thymidi 64.6 9.7 0.00021 38.2 4.5 13 197-209 341-353 (437)
199 TIGR03327 AMP_phos AMP phospho 63.0 11 0.00023 38.5 4.6 33 196-228 415-471 (500)
200 PF02666 PS_Dcarbxylase: Phosp 62.6 31 0.00068 30.4 7.0 62 195-256 20-105 (202)
201 PRK11637 AmiB activator; Provi 60.4 12 0.00027 36.8 4.5 60 195-263 339-399 (428)
202 PRK05820 deoA thymidine phosph 58.7 14 0.00031 37.0 4.5 20 209-228 385-404 (440)
203 PF02666 PS_Dcarbxylase: Phosp 57.9 26 0.00055 31.0 5.6 62 197-260 138-201 (202)
204 TIGR00163 PS_decarb phosphatid 57.6 73 0.0016 29.1 8.7 62 194-255 33-119 (238)
205 TIGR02644 Y_phosphoryl pyrimid 55.6 18 0.00038 36.0 4.6 14 196-209 334-347 (405)
206 PRK03140 phosphatidylserine de 55.0 65 0.0014 29.8 8.1 24 230-253 136-159 (259)
207 KOG0238|consensus 52.9 12 0.00026 38.4 2.9 30 234-263 603-633 (670)
208 COG4942 Membrane-bound metallo 52.2 13 0.00028 37.0 3.0 62 195-265 331-393 (420)
209 PRK02693 apocytochrome f; Revi 51.2 66 0.0014 30.5 7.3 76 188-277 189-265 (312)
210 PRK00044 psd phosphatidylserin 50.6 76 0.0016 29.9 7.8 23 231-253 142-164 (288)
211 PRK00723 phosphatidylserine de 48.4 90 0.002 29.6 8.0 27 229-255 162-188 (297)
212 PRK04192 V-type ATP synthase s 47.6 67 0.0015 33.5 7.4 53 210-263 123-178 (586)
213 CHL00037 petA cytochrome f 46.3 76 0.0016 30.4 6.9 75 188-277 196-273 (320)
214 COG0157 NadC Nicotinate-nucleo 45.3 27 0.00058 33.0 3.8 25 204-228 63-87 (280)
215 PF01333 Apocytochr_F_C: Apocy 45.1 31 0.00068 28.4 3.7 67 197-277 4-71 (118)
216 cd01572 QPRTase Quinolinate ph 44.6 28 0.0006 32.5 3.9 26 203-228 56-81 (268)
217 KOG0368|consensus 44.4 1.1E+02 0.0025 35.5 8.8 109 133-263 604-717 (2196)
218 PRK10871 nlpD lipoprotein NlpD 44.4 14 0.0003 35.6 1.8 20 209-228 272-291 (319)
219 PRK10871 nlpD lipoprotein NlpD 43.9 70 0.0015 30.8 6.5 62 195-264 229-291 (319)
220 PRK11649 putative peptidase; P 41.4 38 0.00083 33.9 4.5 59 195-262 323-382 (439)
221 cd01134 V_A-ATPase_A V/A-type 40.6 1.1E+02 0.0023 30.2 7.3 53 210-263 54-109 (369)
222 PRK03140 phosphatidylserine de 39.1 45 0.00098 30.9 4.3 62 197-261 195-257 (259)
223 TIGR01042 V-ATPase_V1_A V-type 38.8 93 0.002 32.5 6.8 53 210-263 123-178 (591)
224 COG3608 Predicted deacylase [G 38.1 37 0.0008 32.9 3.7 31 234-265 258-289 (331)
225 cd06255 M14_ASTE_ASPA_like_5 A 38.0 42 0.00091 31.5 4.0 32 232-264 231-263 (293)
226 cd06251 M14_ASTE_ASPA_like_1 A 36.7 53 0.0012 30.6 4.5 31 233-264 220-251 (287)
227 PRK06078 pyrimidine-nucleoside 36.7 31 0.00067 34.6 3.0 20 209-228 380-399 (434)
228 PF06898 YqfD: Putative stage 36.0 47 0.001 32.5 4.2 57 197-260 161-225 (385)
229 PRK08072 nicotinate-nucleotide 35.8 41 0.00088 31.6 3.5 23 206-228 65-87 (277)
230 COG4942 Membrane-bound metallo 35.5 28 0.00061 34.7 2.5 45 196-244 297-343 (420)
231 PRK06149 hypothetical protein; 34.2 39 0.00084 37.1 3.5 34 195-228 442-496 (972)
232 PRK07217 replication factor A; 33.8 2.1E+02 0.0045 27.5 7.9 31 254-288 172-206 (311)
233 COG0688 Psd Phosphatidylserine 33.7 1.3E+02 0.0028 27.7 6.3 25 198-222 127-151 (239)
234 PRK02597 rpoC2 DNA-directed RN 33.3 67 0.0015 36.7 5.1 36 209-244 405-447 (1331)
235 COG0739 NlpD Membrane proteins 33.3 29 0.00063 31.2 2.1 20 208-227 215-234 (277)
236 TIGR01043 ATP_syn_A_arch ATP s 33.0 1.2E+02 0.0025 31.7 6.5 53 210-263 120-175 (578)
237 PRK06096 molybdenum transport 32.9 47 0.001 31.4 3.4 24 205-228 61-84 (284)
238 cd06250 M14_PaAOTO_like An unc 32.7 56 0.0012 31.7 4.0 29 234-263 291-320 (359)
239 PRK03934 phosphatidylserine de 32.7 98 0.0021 28.8 5.5 49 211-262 216-265 (265)
240 PRK05742 nicotinate-nucleotide 32.5 49 0.0011 31.1 3.5 23 206-228 67-89 (277)
241 cd06253 M14_ASTE_ASPA_like_3 A 32.2 55 0.0012 30.8 3.8 30 233-263 230-260 (298)
242 PLN02716 nicotinate-nucleotide 31.8 58 0.0013 31.2 3.9 25 204-228 77-101 (308)
243 PRK07896 nicotinate-nucleotide 31.7 51 0.0011 31.2 3.5 24 205-228 76-99 (289)
244 PRK05848 nicotinate-nucleotide 31.7 51 0.0011 30.9 3.5 25 204-228 57-81 (273)
245 cd06254 M14_ASTE_ASPA_like_4 A 31.6 63 0.0014 30.1 4.0 30 233-263 224-254 (288)
246 PRK06543 nicotinate-nucleotide 31.6 52 0.0011 31.1 3.5 24 205-228 65-88 (281)
247 cd06252 M14_ASTE_ASPA_like_2 A 30.9 65 0.0014 30.5 4.1 31 233-264 245-276 (316)
248 PRK07428 nicotinate-nucleotide 30.7 55 0.0012 31.0 3.5 24 205-228 72-95 (288)
249 cd01573 modD_like ModD; Quinol 30.7 55 0.0012 30.6 3.5 24 205-228 56-79 (272)
250 PRK06148 hypothetical protein; 30.3 33 0.00072 37.9 2.2 15 195-209 451-465 (1013)
251 PRK09016 quinolinate phosphori 30.2 56 0.0012 31.1 3.4 24 205-228 85-108 (296)
252 TIGR02994 ectoine_eutE ectoine 30.0 67 0.0014 30.8 4.0 30 234-264 257-287 (325)
253 TIGR02876 spore_yqfD sporulati 29.8 81 0.0018 30.9 4.6 56 197-260 157-222 (382)
254 cd01568 QPRTase_NadC Quinolina 29.0 68 0.0015 29.8 3.8 25 204-228 56-80 (269)
255 PRK06978 nicotinate-nucleotide 28.6 62 0.0014 30.8 3.5 24 205-228 82-105 (294)
256 PRK08385 nicotinate-nucleotide 28.6 63 0.0014 30.4 3.5 24 205-228 58-81 (278)
257 PF01333 Apocytochr_F_C: Apocy 28.3 18 0.00038 29.8 -0.2 16 209-224 46-61 (118)
258 TIGR00078 nadC nicotinate-nucl 27.8 67 0.0015 29.9 3.5 23 206-228 55-77 (265)
259 PF07831 PYNP_C: Pyrimidine nu 27.5 58 0.0013 24.4 2.5 25 238-264 30-55 (75)
260 PRK06106 nicotinate-nucleotide 27.4 79 0.0017 29.9 3.9 25 204-228 69-93 (281)
261 TIGR02645 ARCH_P_rylase putati 26.8 1.1E+02 0.0024 31.2 5.1 35 229-263 410-469 (493)
262 PRK14844 bifunctional DNA-dire 26.6 1E+02 0.0022 37.7 5.3 47 208-256 2423-2469(2836)
263 PRK02866 cyanate hydratase; Va 26.3 1.4E+02 0.003 25.6 4.8 31 42-72 39-69 (147)
264 cd06910 M14_ASTE_ASPA_like_7 A 26.2 86 0.0019 29.0 3.9 31 210-244 225-256 (272)
265 PF13240 zinc_ribbon_2: zinc-r 25.9 36 0.00079 19.8 0.9 13 275-288 5-17 (23)
266 PRK14844 bifunctional DNA-dire 25.7 1E+02 0.0022 37.7 5.1 72 195-266 2300-2445(2836)
267 TIGR01334 modD putative molybd 25.4 77 0.0017 29.9 3.4 24 205-228 60-83 (277)
268 PRK01202 glycine cleavage syst 25.4 81 0.0018 26.0 3.2 33 195-227 66-105 (127)
269 COG0213 DeoA Thymidine phospho 25.2 63 0.0014 32.4 2.9 26 201-228 375-400 (435)
270 cd00516 PRTase_typeII Phosphor 25.2 81 0.0018 29.0 3.6 26 203-228 48-73 (281)
271 CHL00117 rpoC2 RNA polymerase 24.6 1.1E+02 0.0023 35.3 4.9 43 209-251 406-456 (1364)
272 PRK11637 AmiB activator; Provi 24.6 1.1E+02 0.0024 30.1 4.5 52 195-248 304-355 (428)
273 PRK04350 thymidine phosphoryla 24.3 1.3E+02 0.0028 30.7 5.1 35 229-263 402-461 (490)
274 PRK02290 3-dehydroquinate synt 23.1 5.8E+02 0.013 24.9 9.0 12 206-217 311-322 (344)
275 PF09889 DUF2116: Uncharacteri 22.0 44 0.00095 24.2 0.9 17 267-287 4-20 (59)
276 TIGR03327 AMP_phos AMP phospho 21.5 1.6E+02 0.0034 30.3 4.9 35 229-263 411-470 (500)
277 COG1155 NtpA Archaeal/vacuolar 20.5 2.2E+02 0.0047 29.6 5.7 52 211-262 122-175 (588)
278 PRK06559 nicotinate-nucleotide 20.4 1.3E+02 0.0028 28.6 3.9 24 205-228 71-96 (290)
No 1
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=9.3e-61 Score=479.35 Aligned_cols=241 Identities=34% Similarity=0.515 Sum_probs=226.0
Q ss_pred CCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc-----
Q psy2807 22 TSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH----- 96 (288)
Q Consensus 22 ~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i----- 96 (288)
=+|||||||||||+|||+|+|||+|.||.+++.++++.++||+||++||+|.+||||+|||++||+++|+|++|+
T Consensus 870 mfGdivKVTPSSKVVGDmAl~MV~n~Lt~~dv~~~~~~l~fPdSVv~ff~G~lGqP~gGfPe~Lqk~vLkg~~p~t~Rpg 949 (1149)
T COG1038 870 MFGDIVKVTPSSKVVGDLALFMVQNDLTEEDVENDANDLDFPDSVVSFFRGELGQPPGGFPEPLQKKVLKGREPLTDRPG 949 (1149)
T ss_pred HhCCceEecccchhHHHHHHHHHhcCCCHHHHhcccccCCCcHHHHHHhhcccCCCCCCCCHHHHHHHhcCCCccccCcc
Confidence 379999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred --------------cccc----CCccccee--------------ecccCCCCCCCcccccCCCCCCceeeeeecCCceEE
Q psy2807 97 --------------TLDR----KPECDLMM--------------EDEFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAY 144 (288)
Q Consensus 97 --------------L~~~----~~deDvL~--------------~a~fg~~~~l~t~~F~~g~~~gee~~v~~~~Gk~~~ 144 (288)
|+++ .++.|++. ...||++++|||+.|||||..||+++++++.||++.
T Consensus 950 ~~l~~~d~~a~r~~l~~~~~~~~~d~d~~sy~lyPkvf~dy~~~~~~yGd~S~L~t~~ff~gm~~gEe~~v~ie~GktLi 1029 (1149)
T COG1038 950 ELLEPADFEAIRKELEEKLGREVSDQDVASYLLYPKVFEDYQKHRETYGDVSVLPTPTFFYGLRPGEEIEVEIEKGKTLI 1029 (1149)
T ss_pred ccCCccchHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHHhcCCccccCcchhhccCCCCceEEEEecCCcEEE
Confidence 1112 46777773 445899999999999999999999999999999999
Q ss_pred EEEeecccccccCCceEEEEEeCCEEEEEEEeccchhhhhhccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEE
Q psy2807 145 VTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLI 224 (288)
Q Consensus 145 v~l~~~~~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~ 224 (288)
|++.+++ ++++.|.++++|++||+.|++.|+|.+.......++||+.+|+++|.|||||+|+++.|++||.|++||+|+
T Consensus 1030 i~l~aig-e~d~~G~r~v~felNGq~R~i~v~Drs~~~~~~~r~KAd~~Np~higApmpG~Vv~v~V~~G~~Vk~Gd~l~ 1108 (1149)
T COG1038 1030 IKLQAIG-EPDEKGMRTVYFELNGQPREIKVKDRSVGSSVVARRKADPGNPGHIGAPMPGVVVEVKVKKGDKVKKGDVLA 1108 (1149)
T ss_pred EEecccC-CCCcCCcEEEEEEeCCceeeeeecccccccccccccccCCCCccccCCCCCCceEEEEEccCCeecCCCeee
Confidence 9999999 999999999999999999999999987666666778999999999999999999999999999999999999
Q ss_pred EEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 225 VMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 225 ~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
++||||||+.|.||+||+|.+++|+.||+|.. ++|.+++
T Consensus 1109 ~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1109 VIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred ehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence 99999999999999999999999999999999 9998875
No 2
>KOG0369|consensus
Probab=100.00 E-value=4.3e-57 Score=446.44 Aligned_cols=243 Identities=40% Similarity=0.647 Sum_probs=228.0
Q ss_pred CCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc-----
Q psy2807 22 TSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH----- 96 (288)
Q Consensus 22 ~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i----- 96 (288)
-+|||||||||||||||+|+|||+|.|+++++.+|+.+++||+||++||+|++|+|++||||+|+.++|+|++.+
T Consensus 897 lLGDiiKVTPsSKvVGDLAQFMVqN~Lt~~~~~~rA~~LsFP~SVvdf~qG~iGqP~gGFPEPlRs~VLk~~~r~~gRPG 976 (1176)
T KOG0369|consen 897 LLGDIIKVTPSSKVVGDLAQFMVQNKLTRDDVERRAEELSFPKSVVDFFQGLIGQPYGGFPEPLRSKVLKGKPRLTGRPG 976 (1176)
T ss_pred HhhCeeeeccchhhHHHHHHHHHhcCCCHHHHHHHhhhcCCcHHHHHHHhcccCCCCCCCCchhHHHHhcCCCccCCCCC
Confidence 489999999999999999999999999999999999999999999999999999999999999999999987655
Q ss_pred --------------cccc---CCcccce--------------eecccCCCCCCCcccccCCCCCCceeeeeecCCceEEE
Q psy2807 97 --------------TLDR---KPECDLM--------------MEDEFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYV 145 (288)
Q Consensus 97 --------------L~~~---~~deDvL--------------~~a~fg~~~~l~t~~F~~g~~~gee~~v~~~~Gk~~~v 145 (288)
|.++ .+++||+ |++.||++..|||+.|+.|++.+|||+|+++.||+++|
T Consensus 977 ~~l~p~Dldai~keL~e~~~~~s~~Dv~sy~myP~Vf~~f~~fr~~yG~ld~lpTr~FL~~pe~~EE~~Veie~GKTL~i 1056 (1176)
T KOG0369|consen 977 AELPPLDLDAIRKELQERHGDVSECDVASYAMYPRVFEDFQKFRETYGPLDKLPTRLFLTGPEIAEEFEVEIEQGKTLII 1056 (1176)
T ss_pred CcCCccCHHHHHHHHHHhcCCCcHHHhhhhhhccHHHHHHHHHHHhcCCccccchhhhccCCCcCceEEEEeccCcEEEE
Confidence 2222 6889998 45568999999999999999999999999999999999
Q ss_pred EEeecccccccCCceEEEEEeCCEEEEEEEeccchhhhhhccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEE
Q psy2807 146 TTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIV 225 (288)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~ 225 (288)
++.+.+..+...|.|+++|++||+.|++.|.|..+..+...+|+|++++.++|.|||||+|+++.|++|+.|+|||+|++
T Consensus 1057 k~lAvg~~~~~~GqReVfFeLNGqlR~i~v~Dk~a~ke~v~~PkA~~~~~g~igAPMpG~vieikvk~G~kV~Kgqpl~V 1136 (1176)
T KOG0369|consen 1057 KLLAVGDLLKKTGQREVFFELNGQLRSIRVADKEAAKEIVTRPKADPGVKGHIGAPMPGTVIEIKVKEGAKVKKGQPLAV 1136 (1176)
T ss_pred EeeecccccccCCceEEEEEecCceeeEEeechhhhhhhcccccCCCCCcccccCCCCCceEEEEEecCceecCCCceEe
Confidence 99999845567799999999999999999999988888888999999999999999999999999999999999999999
Q ss_pred EeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 226 MSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 226 lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
|.|||||+.|.||.+|+|+++++..|+.+.. +++++|++
T Consensus 1137 LSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E~ 1176 (1176)
T KOG0369|consen 1137 LSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELEH 1176 (1176)
T ss_pred eecceeeeeecCCCCceeeEEEecCCCcccccceEEEccC
Confidence 9999999999999999999999999999999 99999864
No 3
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=100.00 E-value=3.2e-53 Score=452.06 Aligned_cols=242 Identities=34% Similarity=0.511 Sum_probs=221.2
Q ss_pred CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807 21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH---- 96 (288)
Q Consensus 21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i---- 96 (288)
.++|||||||||||||||||+|||+|+|+++++.++++.++||+|+++||+|+||+||+|||+++++++|+|++++
T Consensus 864 ~~lG~~~~VTP~Sq~vg~~A~~~v~~~l~~~~v~~~~~~~~~~~~v~~~~~G~~G~pp~~~~~~~~~~vl~~~~~~~~rp 943 (1143)
T TIGR01235 864 QMFGDIVKVTPSSKVVGDMALFMVSNDLTVDDVVEPAEELSFPDSVVEFLKGDIGQPHGGFPEPLQKKVLKGEKPITVRP 943 (1143)
T ss_pred HHcCCCceECChhHhHHHHHHHHHHhccChhhhccccccccCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCCc
Confidence 4689999999999999999999999999999999888888999999999999999999999999999999998876
Q ss_pred -----------cccc--------CCcccceeecc--------------cCCCCCCCcccccCCCCCCceeeeeecCCceE
Q psy2807 97 -----------TLDR--------KPECDLMMEDE--------------FGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTA 143 (288)
Q Consensus 97 -----------L~~~--------~~deDvL~~a~--------------fg~~~~l~t~~F~~g~~~gee~~v~~~~Gk~~ 143 (288)
++++ .++||+|.|++ ||+++.|+|+.||+|++.+|++++++++||++
T Consensus 944 ~~~l~p~~~~~~~~~~~~~~~~~~~~ed~~~y~~~p~v~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~e~~v~~~~g~~~ 1023 (1143)
T TIGR01235 944 GSLLEPADLDAIRKDLQEKHEREVSDFDVASYAMYPKVFTDFAKARDTYGPVSVLPTPAFFYGLADGEEIEVDIEKGKTL 1023 (1143)
T ss_pred cccCCcccHHHHHHHHHHHhcCCCCHHHHHHHHcCcHHHHHHHHHHHhcCCccccccccccccCCCCcEEEEEecCCcEE
Confidence 1111 57899995554 67888999999999999999999999999999
Q ss_pred EEEEeecccccccCCceEEEEEeCCEEEEEEEeccchhhhhhccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEE
Q psy2807 144 YVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVL 223 (288)
Q Consensus 144 ~v~l~~~~~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l 223 (288)
+|++.+++ +++..|.++++|++||+.+++.+.+.+.......++++++.++.+|.|||+|+|++|+|++||.|++||+|
T Consensus 1024 ~i~~~~~~-~~~~~g~r~v~fElNGq~reV~V~D~s~~~~~~~~~KAd~~~~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L 1102 (1143)
T TIGR01235 1024 IIKLQAVG-ATDSQGEREVFFELNGQPRRIKVPDRSHKAEAAVRRKADPGNPAHVGAPMPGVIIEVKVSSGQAVNKGDPL 1102 (1143)
T ss_pred EEEecccc-ccCCCCcEEEEEEECCeEEEEEecCcccccccccccccccccCceeecCCCcEEEEEEeCCCCEeCCCCEE
Confidence 99999999 88888999999999999999999987654333445677788889999999999999999999999999999
Q ss_pred EEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 224 IVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 224 ~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
++|||||||++|.||.+|+|+++++++|+.|.. ++|++|+
T Consensus 1103 ~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1103 VVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred EEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 999999999999999999999999999999999 9999874
No 4
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=1.6e-52 Score=447.79 Aligned_cols=243 Identities=33% Similarity=0.488 Sum_probs=221.0
Q ss_pred CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807 21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH---- 96 (288)
Q Consensus 21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i---- 96 (288)
.++|||||||||||||||||+|||+|.|+.+++.++++.++||+|+++|++|+||+||+|||+++++++|+|++++
T Consensus 866 ~~~G~~~~VTP~Sq~vg~~A~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~G~~~~~~~~~~~~~~l~~~~~~~~rp 945 (1146)
T PRK12999 866 RMFGDIVKVTPSSKVVGDMALFMVQNGLTPEDVYEPGEDLDFPDSVVSFLKGELGQPPGGFPEPLQKKVLKGEEPITVRP 945 (1146)
T ss_pred HHcCCCceeCccchhhHHHHHHHHhhccchhhhhccCceeeCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCCh
Confidence 4699999999999999999999999999999999998889999999999999999999999999999999998876
Q ss_pred ---c--------cc----c----CCcccceeec--------------ccCCCCCCCcccccCCCCCCceeeeeecCCceE
Q psy2807 97 ---T--------LD----R----KPECDLMMED--------------EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTA 143 (288)
Q Consensus 97 ---L--------~~----~----~~deDvL~~a--------------~fg~~~~l~t~~F~~g~~~gee~~v~~~~Gk~~ 143 (288)
| ++ + .++||+|.|+ .||+++.|+|+.||+|++.||++++++++||++
T Consensus 946 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~e~~~~~~~~gk~~ 1025 (1146)
T PRK12999 946 GELLEPVDFEAERAELEEKLGREVTDRDVLSYLLYPKVFEDYIKHREEYGDVSVLPTPTFFYGLRPGEEIEVEIEPGKTL 1025 (1146)
T ss_pred hhhCCcccHHHHHHHHHHHhcCCCCHHHHHHHHhCcHHHHHHHHHHHhcCCcccCCCchhhcccCcCceEEeecCCCcee
Confidence 1 11 1 5779999555 478999999999999999999999999999999
Q ss_pred EEEEeecccccccCCceEEEEEeCCEEEEEEEeccchhhhhhccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEE
Q psy2807 144 YVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVL 223 (288)
Q Consensus 144 ~v~l~~~~~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l 223 (288)
+|++.+++ ++++.|.++++|++||+.|+|.|.+..........+++++.++.+|.|||+|+|++|+|++||.|++||+|
T Consensus 1026 ~i~~~~~~-~~~~~g~~~~~~~vnG~~~~V~v~d~~~~~~~~~~~~a~~~~~~~v~apm~G~v~~i~v~~Gd~V~~G~~L 1104 (1146)
T PRK12999 1026 IIKLEAIG-EPDEDGMRTVYFELNGQPREVQVRDRSVKSTVAAREKADPGNPGHVGAPMPGSVVTVLVKEGDEVKAGDPL 1104 (1146)
T ss_pred EEEeeccc-CcccCCcEEEEEEECCEEEEEEEecCccccccccccccCCCCCceEeCCceEEEEEEEcCCCCEECCCCEE
Confidence 99999998 88888999999999999999999987533222234566777888999999999999999999999999999
Q ss_pred EEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 224 IVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 224 ~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
++|||||||++|+||.+|+|+++++++|+.|.. ++|++|++
T Consensus 1105 ~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~~ 1146 (1146)
T PRK12999 1105 AVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELEP 1146 (1146)
T ss_pred EEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEcC
Confidence 999999999999999999999999999999999 99999864
No 5
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=100.00 E-value=4.1e-52 Score=418.57 Aligned_cols=231 Identities=19% Similarity=0.309 Sum_probs=205.0
Q ss_pred CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807 21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH---- 96 (288)
Q Consensus 21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i---- 96 (288)
.++|||||||||||||||||+| |+|+++||+ .||+|+++|++|+||+||+|||+++++++|++++++
T Consensus 329 ~~lG~~~~VTP~Sqivg~qA~~---Nvl~g~r~~------~~~~~v~~~~~G~~G~pp~~~~~~l~~~il~~~~~~~~rp 399 (596)
T PRK14042 329 KDLGYPPLVTPTSQVVGTQAVI---NVLTGERYK------TITNEVKLYCQGKYGTPPGKISSALRKKAIGRTEVIEVRP 399 (596)
T ss_pred HHcCCCCeECCcCcEEEEEehh---hccChhhee------ECCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCCc
Confidence 4799999999999999999955 999999998 999999999999999999999999999999998776
Q ss_pred ----------cccc-----CCcccceeecccCCC-----------CCCCcccccCCCCCCc----eeeeeecCCceEEEE
Q psy2807 97 ----------TLDR-----KPECDLMMEDEFGPV-----------DRLPTRIFLNGPNIGE----EFSCEFKTGDTAYVT 146 (288)
Q Consensus 97 ----------L~~~-----~~deDvL~~a~fg~~-----------~~l~t~~F~~g~~~ge----e~~v~~~~Gk~~~v~ 146 (288)
++++ .++||+|.|++||++ +.+|+..||+|+..++ +|+|+. +||+|+|+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~ed~l~y~l~p~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~-~Gk~~~Ik 478 (596)
T PRK14042 400 GDLLPNELDQLQNEISDLALSDEDVLLYAMFPEIGRQFLEQRKNNQLIPEPLLTQSSAPDNSVMSEFDIIL-HGESYHVK 478 (596)
T ss_pred cccCCcCHHHHHHHHhhccCCHHHHHHHHhCcHHHHHHHHHHhccccCCccccccccccCCCCceEEEEEE-CCEEEEEE
Confidence 2222 588999999998743 4668888998876666 899985 69999999
Q ss_pred EeecccccccCCceEEEEEeCCEEEEEEEeccchhhhhhccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEE
Q psy2807 147 TLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM 226 (288)
Q Consensus 147 l~~~~~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~l 226 (288)
+.+++ . ++.|.++++|++||+.+.+.+.|.+........++++..++++|.|||||+|++|+|++||.|++||+|+++
T Consensus 479 l~~~g-~-~~~G~r~v~fevng~~r~v~v~d~~~~~~~~~~~~a~~~~~~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~i 556 (596)
T PRK14042 479 VAGYG-M-IEHGQQSCFLWVDGVPEEVVVQHSELHDKIERSSVNNKIGPGDITVAIPGSIIAIHVSAGDEVKAGQAVLVI 556 (596)
T ss_pred Eeccc-c-ccCCceEEEEEEcCccceeecccccccccccccccCCCCCCCeEecCcceEEEEEEeCCCCEeCCCCEEEEE
Confidence 99998 5 567899999999999999999886543333344566777788999999999999999999999999999999
Q ss_pred eccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 227 SVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 227 EamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
||||||++|+||.+|+|.++++++|+.|.. ++|++|+
T Consensus 557 EamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~ 594 (596)
T PRK14042 557 EAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVE 594 (596)
T ss_pred EecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEe
Confidence 999999999999999999999999999999 9999986
No 6
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=100.00 E-value=5e-48 Score=390.18 Aligned_cols=227 Identities=19% Similarity=0.270 Sum_probs=199.7
Q ss_pred CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807 21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH---- 96 (288)
Q Consensus 21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i---- 96 (288)
.++|||||||||||||||||+| |+++|+||+ +||+|+++|++|+||+||+|||+++++++|++++++
T Consensus 329 ~~lG~~~~VTP~Sq~vg~~A~~---nv~~~~~~~------~~~~~~~~~~~G~~G~~p~~~~~~~~~~~l~~~~~~~~rp 399 (592)
T PRK09282 329 EDLGYPPLVTPTSQIVGTQAVL---NVLTGERYK------VITKEVKDYVKGLYGRPPAPINEELRKKIIGDEEPITCRP 399 (592)
T ss_pred HHcCCCCeECChhHhHHHHHHH---HHHcCCccc------cCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCCc
Confidence 4799999999999999999966 788899998 999999999999999999999999999999998776
Q ss_pred ----------cccc-----CCc-ccceeecc--------------cCCCC--CCCcccccCCCCCCceeeeeecCCceEE
Q psy2807 97 ----------TLDR-----KPE-CDLMMEDE--------------FGPVD--RLPTRIFLNGPNIGEEFSCEFKTGDTAY 144 (288)
Q Consensus 97 ----------L~~~-----~~d-eDvL~~a~--------------fg~~~--~l~t~~F~~g~~~gee~~v~~~~Gk~~~ 144 (288)
++++ .++ ||+|.|++ ||+.. .++|+.||+|++.+++++++++ ||+|+
T Consensus 400 ~~~~~p~~~~~~~~~~~~~~~~~e~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~-Gk~~~ 478 (592)
T PRK09282 400 ADLLEPELEKARKEAEELGKSEKEDVLTYALFPQIAKKFLEEREAGELKPEPEPKEAAAAGAEGIPTEFKVEVD-GEKYE 478 (592)
T ss_pred ccccCCCHHHHHHHHHHHhcCCHHHHHHHHhCcHHHHHHHHHHhccCCcccccCCccccccCCCCCeEEEEEEC-CEEEE
Confidence 1221 345 89995554 67765 8899999999999999999997 99999
Q ss_pred EEEeecccccccCCceEEEEEeCCEEEEEEEeccchhhhhhccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEE
Q psy2807 145 VTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLI 224 (288)
Q Consensus 145 v~l~~~~~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~ 224 (288)
|++.+++ +++ .++++|++||+.+++.+.+....... .++++.++..|+|||+|+|.+|+|++||.|++||+|+
T Consensus 479 i~~~~~g-~~~---~r~~~~~~ng~~~~v~v~d~~~~~~~---~~~~~~~~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~ 551 (592)
T PRK09282 479 VKIEGVK-AEG---KRPFYLRVDGMPEEVVVEPLKEIVVG---GRPRASAPGAVTSPMPGTVVKVKVKEGDKVKAGDTVL 551 (592)
T ss_pred EEEeecc-CCC---cceEEEEecCceeeeeccCccccccc---ccCCCCCCceEeCCCcEEEEEEEeCCCCEECCCCEEE
Confidence 9999987 443 78999999999999999886432111 1445667789999999999999999999999999999
Q ss_pred EEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 225 VMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 225 ~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
+||+|||+++|+||.+|+|+++++++|+.|.. ++|+.|+|
T Consensus 552 ~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~~ 592 (592)
T PRK09282 552 VLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIEP 592 (592)
T ss_pred EEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEecC
Confidence 99999999999999999999999999999999 99999975
No 7
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=100.00 E-value=1.9e-46 Score=377.95 Aligned_cols=221 Identities=18% Similarity=0.194 Sum_probs=178.9
Q ss_pred CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807 21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH---- 96 (288)
Q Consensus 21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i---- 96 (288)
.++|||||||||||||||||+| |+|+++||+ .||+|+++|++|+||+||+|||+++++++|++++++
T Consensus 324 ~~lG~~~~VTP~Sq~vg~~A~~---nvl~~~r~~------~~~~~~~~~~~G~~G~~p~~~~~~~~~~~l~~~~~~~~~r 394 (582)
T TIGR01108 324 EDLGYPPLVTPTSQIVGTQAVL---NVLTGERYK------TITKETKGYLKGEYGRTPAPINAELQRKILGDEKPIVDCR 394 (582)
T ss_pred HHcCCCCeECCccHHHHHHHHH---hhcCHHhhe------eCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCcCCCC
Confidence 4799999999999999999965 999999998 999999999999999999999999999999987654
Q ss_pred -----------ccc----c----CCcccceeecccCCCC--CCC---cccccCCCCCCceeeeeecCCceEEEEEeeccc
Q psy2807 97 -----------TLD----R----KPECDLMMEDEFGPVD--RLP---TRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISE 152 (288)
Q Consensus 97 -----------L~~----~----~~deDvL~~a~fg~~~--~l~---t~~F~~g~~~gee~~v~~~~Gk~~~v~l~~~~~ 152 (288)
+++ . .++||+|.|++||+++ ++. ...||+|++.++++. + .++++.+.
T Consensus 395 p~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~-- 465 (582)
T TIGR01108 395 PADLLEPELDKLRAEVREAGAEKNSIEDVLTYALFPQVGLKFLENRHNPAAFEPKPEEKVIE---Q----EHAQVVGK-- 465 (582)
T ss_pred cccccCchHHHHHHHHHHhcccCCCHHHHHHHHhccHHHHHHHHhhhccccccCCCCcchhh---h----hhhhcccc--
Confidence 122 1 5789999999999886 111 113556666655443 1 13444433
Q ss_pred ccccCCceEEEEEeCCEEEEEEEeccchhhhhh---------ccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEE
Q psy2807 153 RLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLK---------LRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVL 223 (288)
Q Consensus 153 ~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~---------~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l 223 (288)
..+..+.++++|++||+.+.|.|.+........ ..++++.+++++|.|||||+|++|+|++||.|++||+|
T Consensus 466 ~~~~~g~~~~~~~vnG~~~~V~v~d~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l 545 (582)
T TIGR01108 466 YEETHASGSYTVEVEGKAFVVKVSPGGDVSQITASAPANTSGGTVAAKAGAGTPVTAPIAGSIVKVKVSEGQTVAEGEVL 545 (582)
T ss_pred ccccCCceEEEEEECCEEEEEEEcCCccccccccccccccccccccCCCCCCCeEeCCccEEEEEEEeCCCCEECCCCEE
Confidence 234457889999999999999998864321111 12234455678999999999999999999999999999
Q ss_pred EEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-cee
Q psy2807 224 IVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQ 259 (288)
Q Consensus 224 ~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L 259 (288)
++|||||||++|.||.+|+|.++++++||.|.. ++|
T Consensus 546 ~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 546 LILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred EEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 999999999999999999999999999999988 764
No 8
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=2.3e-45 Score=370.46 Aligned_cols=224 Identities=18% Similarity=0.196 Sum_probs=176.8
Q ss_pred CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807 21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH---- 96 (288)
Q Consensus 21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i---- 96 (288)
.++|||||||||||||||||+| |+|+++||+ .||+|+++|++|+||+||+|||+++++++|+|++++
T Consensus 330 ~~lG~~~~VTP~Sqivg~~A~~---N~l~~~r~~------~~~~~v~~~~~G~~G~~p~~~~~~~~~~~l~~~~~~~~rp 400 (593)
T PRK14040 330 EDLGFIPLVTPTSQIVGTQAVL---NVLTGERYK------TITKETAGVLKGEYGATPAPVNAELQARVLEGAEPITCRP 400 (593)
T ss_pred HHcCCCCeECChhHHHHHHHHH---hcCChHhhe------eCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCCh
Confidence 4799999999999999999965 999999998 999999999999999999999999999999998776
Q ss_pred ----------cccc-----------C---CcccceeecccCCCCCCCcccccCCCCCCceeeeeecCCceEEEEEeeccc
Q psy2807 97 ----------TLDR-----------K---PECDLMMEDEFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISE 152 (288)
Q Consensus 97 ----------L~~~-----------~---~deDvL~~a~fg~~~~l~t~~F~~g~~~gee~~v~~~~Gk~~~v~l~~~~~ 152 (288)
++++ . ++||+|.|++||++. ..||.+......|. .++.++...+. +
T Consensus 401 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~e~~e~~l~~~~~p~v~----~~f~~~~~~~~~~~-~~~~~~~~~~~----~- 470 (593)
T PRK14040 401 ADLLAPELDKLEAELRRQAQEKGITLAENAIDDVLTYALFPQIG----LKFLENRHNPAAFE-PVPQAEAAQPA----A- 470 (593)
T ss_pred hhhcCchHHHHHHHHHHHhhhcCCCcccCCHHHHHHHHhccHHH----HHHHHhhccccccc-CCCcccccccc----c-
Confidence 1111 1 348999999999987 56655443211010 11112211111 1
Q ss_pred ccccCCceEEEEEeCCEEEEEEEeccch---hhh-h------hccccC-CCCCCCeeecCCcEEEEEEecCCCCEEecCC
Q psy2807 153 RLNDHGERTVFFLYNGQLRSVLIRDKNQ---AKK-L------KLRSKA-DSDTAGEIGAPMPGNIIEVKAKVGQQVKKND 221 (288)
Q Consensus 153 ~~~~~~~~~~~~~vnG~~~~v~v~~~~~---~~~-~------~~~~~a-~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~ 221 (288)
..+..+.+++.|++||+.+.+.|.+... ... . ...+++ +.+++..|+|||+|+|++|+|++||.|++||
T Consensus 471 ~~~e~g~~~~~~~vnG~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd 550 (593)
T PRK14040 471 KAEPAGSETYTVEVEGKAYVVKVSEGGDISQITPAAPAAAPAAAAAAAPAAAAGEPVTAPLAGNIFKVIVTEGQTVAEGD 550 (593)
T ss_pred cCCCCCCeEEEEEECCEEEEEEECCCCccccccccccccccccccccccCCCCCceEECCccEEEEEEEeCCCCEeCCCC
Confidence 2344577899999999999999987651 110 0 111222 3445669999999999999999999999999
Q ss_pred EEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 222 VLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 222 ~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
+|+++|||||+++|+||.+|+|.++++++|+.|.. ++|++|+
T Consensus 551 ~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 593 (593)
T PRK14040 551 VLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA 593 (593)
T ss_pred EEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 99999999999999999999999999999999999 9999874
No 9
>PF02436 PYC_OADA: Conserved carboxylase domain; InterPro: IPR003379 This domain represents a conserved region in pyruvate carboxylase (PYC) (6.4.1.1 from EC), oxaloacetate decarboxylase alpha chain (OADA) (4.1.1.3 from EC), and transcarboxylase 5s subunit (2.1.3.1 from EC). The domain is found adjacent to the HMGL-like domain (IPR000891 from INTERPRO) and often close to the biotin_lipoyl domain (IPR000089 from INTERPRO) of biotin requiring enzymes.; PDB: 2NX9_B 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1S3H_A 1RQE_A 1U5J_A 1RQB_A 2QF7_B ....
Probab=99.97 E-value=8.1e-33 Score=244.83 Aligned_cols=121 Identities=27% Similarity=0.381 Sum_probs=95.9
Q ss_pred CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807 21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH---- 96 (288)
Q Consensus 21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i---- 96 (288)
.++|||||||||||||||||+|||+|.+.++||+ +||+|+++|++|+||+||+|||+++++++|+++++|
T Consensus 39 ~~lG~~~~VTPsSqiVg~qA~~nV~~~~~g~r~~------~~p~~v~~~~~G~~G~pp~~~~~~l~~~vl~~~~~i~~RP 112 (196)
T PF02436_consen 39 KDLGYPPKVTPSSQIVGDQAVFNVLNGLLGERYK------DFPDSVVDYLLGKYGKPPGGFPEELRKKVLKGEEPITGRP 112 (196)
T ss_dssp HHTTS--SSTTHHHHHHHHHHHHHHTT-HHTTTS------S-BHHHHHHHTTTT---TTSS-HHHHHHHHTTS---SSSG
T ss_pred HHcCCccccCcHHHHHHHHHHHHHHhhhcCcccc------chhHHHHHHhCcccCCCCCCCCHHHHHHHhcCCCCCCCCc
Confidence 4689999999999999999999999888787887 999999999999999999999999999999998876
Q ss_pred -----------cccc--------CCcccceeec--------------ccCCCCCCCcccccCCCCCCceeeeeecCCceE
Q psy2807 97 -----------TLDR--------KPECDLMMED--------------EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTA 143 (288)
Q Consensus 97 -----------L~~~--------~~deDvL~~a--------------~fg~~~~l~t~~F~~g~~~gee~~v~~~~Gk~~ 143 (288)
++++ .+|||+|.|+ .||+++.|+|+.||+|++.+++++|+++.||++
T Consensus 113 ~~~l~p~d~~~~r~~l~~~~g~~~~dedvlsyal~P~v~~~f~~~~~~~g~~~~l~t~~~~~g~~~~ee~~v~l~~Gktl 192 (196)
T PF02436_consen 113 GDLLPPADLDKLRKELEEKAGREPTDEDVLSYALFPKVAEDFLKFRAKYGDVSVLPTPVFFYGLKPGEEISVELEPGKTL 192 (196)
T ss_dssp GGCS----HHHHHHHHHHHCTSTSCHHHHHHHHHCHHHHHHHHHHHHHHS-GGCS-HHHHHHHH-TTEEEEEESCTTEEE
T ss_pred cccCChhhHHHHHHHHHHHcCCCCCHHHHHHHhcCchhHHHHHHHHHhcCCCCcCCchhhhcCCCCCeEEEEEECCCcEE
Confidence 1111 5899999555 467899999999999999999999999889999
Q ss_pred EEEE
Q psy2807 144 YVTT 147 (288)
Q Consensus 144 ~v~l 147 (288)
+|+|
T Consensus 193 ~vkl 196 (196)
T PF02436_consen 193 IVKL 196 (196)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9986
No 10
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=99.89 E-value=1.7e-24 Score=214.60 Aligned_cols=141 Identities=12% Similarity=0.064 Sum_probs=102.2
Q ss_pred CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhh--CCCCcc--
Q psy2807 21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVL--GSLKDH-- 96 (288)
Q Consensus 21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL--~g~~~i-- 96 (288)
.++|||||||||||||||||+| |+++| ||+ .+|+|+++|++|+||+||+|||+++++++| +|++++
T Consensus 332 ~~lG~~~~VTP~Sqivg~qA~~---nv~~g-ry~------~~~~e~~~~~~G~yG~~p~~~~~e~~~~~~~~~~~~~~~~ 401 (499)
T PRK12330 332 KDAGYPPLVTPSSQIVGTQAVF---NVLMG-RYK------VLTGEFADLMLGYYGETPGERNPEVVEQAKKQAKKEPITC 401 (499)
T ss_pred HHcCCCCeeCChhHHHHHHHHH---HHHcC-ccc------cCCHHHHHHhCcCCCCCCCCCCHHHHHHHHhhCCCCCCcC
Confidence 4799999999999999999966 66667 887 889999999999999999999999999997 577776
Q ss_pred ------------cccc--------CCcccceeecccCCCCCCCcccccCCCCCCce-eeeeecCCceEEEEEeecccccc
Q psy2807 97 ------------TLDR--------KPECDLMMEDEFGPVDRLPTRIFLNGPNIGEE-FSCEFKTGDTAYVTTLSISERLN 155 (288)
Q Consensus 97 ------------L~~~--------~~deDvL~~a~fg~~~~l~t~~F~~g~~~gee-~~v~~~~Gk~~~v~l~~~~~~~~ 155 (288)
++++ .+|||+|.|++||+++ ..||........ +.+....++... ...... ...
T Consensus 402 rp~~~l~p~~~~~~~~~~~~~~~~~~~edvl~y~l~p~v~----~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~ 475 (499)
T PRK12330 402 RPADLLEPEWDKLRAEALALEGCDGSDEDVLTYALFPQVA----PKFFATRAEGPKNVGKDPAQGAAEA-AAAAGH-AGA 475 (499)
T ss_pred ChhhhcCchHHHHHHHHHHhccCCCCHHHHHHHHcCcHHH----HHHHHHHHhcccccCCchhhhhhhc-cccccc-cCc
Confidence 1211 5789999999999998 888865432221 333321111100 000000 111
Q ss_pred cCCceEEEEEeCCEEEEEEEec
Q psy2807 156 DHGERTVFFLYNGQLRSVLIRD 177 (288)
Q Consensus 156 ~~~~~~~~~~vnG~~~~v~v~~ 177 (288)
..+..++.+.++|+.+.|.|..
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~ 497 (499)
T PRK12330 476 ITGPITYKVTVGGRSHKVTVAP 497 (499)
T ss_pred ccCceEEEEEECCEEEEEEEee
Confidence 2456688999999999998853
No 11
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=99.88 E-value=3.4e-24 Score=211.44 Aligned_cols=95 Identities=18% Similarity=0.230 Sum_probs=86.1
Q ss_pred CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807 21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH---- 96 (288)
Q Consensus 21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i---- 96 (288)
.++|||||||||||||||||+| |+|+|+||+ .||+|+++|++|+||+||+|||+++++++|++++++
T Consensus 328 ~~lG~~~~VTP~Sq~vg~~A~~---Nvl~g~r~~------~~~~~~~~~~~G~~G~~p~~~~~~~~~~il~~~~~~~~rp 398 (467)
T PRK14041 328 KDLGYPPLVTPTSQIVGVQAVL---NVLTGERYK------RVTNETKNYVKGLYGRPPAPIDEELMKKILGDEKPIDCRP 398 (467)
T ss_pred HHcCCCCcCCChhHHHHHHHHH---hhcChhhee------eCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCCh
Confidence 4799999999999999999965 999999998 999999999999999999999999999999998776
Q ss_pred ----------cccc-----CCcccceeecccCCCCCCCcccccCCCC
Q psy2807 97 ----------TLDR-----KPECDLMMEDEFGPVDRLPTRIFLNGPN 128 (288)
Q Consensus 97 ----------L~~~-----~~deDvL~~a~fg~~~~l~t~~F~~g~~ 128 (288)
++++ .++||+|.|++||+++ ..||.+..
T Consensus 399 ~~~~~p~~~~~~~~~~~~~~~~e~~l~y~~~p~v~----~~f~~~~~ 441 (467)
T PRK14041 399 ADLLEPELEKARKELGILAETDEDLLIYVILGEVG----KKFLKKKY 441 (467)
T ss_pred hhccCchHHHHHHHhcccCCCHHHHHHHHcCcHHH----HHHHHhcc
Confidence 1222 5889999999999998 89998765
No 12
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=99.88 E-value=5.6e-24 Score=202.85 Aligned_cols=98 Identities=20% Similarity=0.228 Sum_probs=86.6
Q ss_pred CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCC-CCcc---
Q psy2807 21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGS-LKDH--- 96 (288)
Q Consensus 21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g-~~~i--- 96 (288)
.++|||++|||||||||+|| |.|||+||||+ .|++++++|++|+||+||+++++++++++|++ .++|
T Consensus 332 edlGypPLVTPtSQiVGtQA---vlNVl~GerYK------~It~E~~~yv~G~YGrtPapi~~el~~~ilg~~~~~i~~R 402 (472)
T COG5016 332 EDLGYPPLVTPTSQIVGTQA---VLNVLTGERYK------VITKETKDYVKGLYGRTPAPINAELIEKILGDEEKPITCR 402 (472)
T ss_pred hhcCCCCccCchhhhhhHHH---HHHHHhcchhh------HHHHHHHHHhccccCCCCCCCCHHHHHHHhCCCCCcccCC
Confidence 58999999999999999999 66999999999 99999999999999999999999999999999 4666
Q ss_pred -----------cc----cc---CCcccceeecccCCCCCCCcccccCCCCCCc
Q psy2807 97 -----------TL----DR---KPECDLMMEDEFGPVDRLPTRIFLNGPNIGE 131 (288)
Q Consensus 97 -----------L~----~~---~~deDvL~~a~fg~~~~l~t~~F~~g~~~ge 131 (288)
++ +. ..+||||+|++|++++ ..||.+....+
T Consensus 403 pADll~pe~~k~k~e~~~~~~~~~eeDVLtyalfp~va----~~Fl~~r~~~e 451 (472)
T COG5016 403 PADLLEPELDKLKKELEELAIEEEEEDVLTYALFPQVA----KKFLEGREKPE 451 (472)
T ss_pred hhhhcchHHHHHHHHHHHHhhhcccccchhhhhhHHHH----HHHHhcccccc
Confidence 11 11 3568999999999999 99998775433
No 13
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=99.88 E-value=7.8e-24 Score=208.27 Aligned_cols=94 Identities=16% Similarity=0.223 Sum_probs=83.7
Q ss_pred CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807 21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH---- 96 (288)
Q Consensus 21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i---- 96 (288)
.++|||||||||||||||||+| |+|+|+||+ .+|+|+++|++|+||+||+|||+++++++|++++++
T Consensus 332 ~~lG~~~~VTP~Sq~vg~~A~~---nvl~g~r~~------~~~~~~~~~~~G~~G~~p~~~~~~~~~~~l~~~~~~~~rp 402 (448)
T PRK12331 332 ADLGYPPLVTPLSQMVGTQALM---NVISGERYK------MVPNEIKDYVRGLYGRPPAPIAEEIKKKIIGDEEVITCRP 402 (448)
T ss_pred HHcCCCCeeCChhHHHHHHHHH---HHhcchhhc------cCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCCh
Confidence 4799999999999999999965 789999998 999999999999999999999999999999998776
Q ss_pred ----------cccc-----CCcccceeecccCCCCCCCcccccCCC
Q psy2807 97 ----------TLDR-----KPECDLMMEDEFGPVDRLPTRIFLNGP 127 (288)
Q Consensus 97 ----------L~~~-----~~deDvL~~a~fg~~~~l~t~~F~~g~ 127 (288)
++++ .++||+|.|++||+++ ..||...
T Consensus 403 ~~~~~p~~~~~~~~~~~~~~~~e~~l~y~~~p~v~----~~~~~~~ 444 (448)
T PRK12331 403 ADLIEPQLEKLREEIAEYAESEEDVLSYALFPQQA----KDFLGRR 444 (448)
T ss_pred hhcCCccHHHHHHHHHHhcCCHHHHHHHHcCcHHH----HHHHHHh
Confidence 1222 6789999999999998 8887543
No 14
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=99.87 E-value=1.2e-23 Score=206.91 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=83.2
Q ss_pred CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807 21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH---- 96 (288)
Q Consensus 21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i---- 96 (288)
.++||||||||||||||+||+| ||++|+||+ .||+|+++|++|+||+||+|||+++++++|++++++
T Consensus 341 ~~lG~p~~VTP~Sqivg~qA~~---nV~~g~ry~------~~~~ev~~~~~G~yG~~p~~~~~el~~~il~~~~~~~~rp 411 (468)
T PRK12581 341 KDLGYPPLVTPLSQMVGTQAAM---NVILGKPYQ------MVSKEIKQYLAGDYGKTPAPVNEDLKRSQIGSAPVTTNRP 411 (468)
T ss_pred HHcCCCCEECChhHHHHHHHHH---HHHcCCCch------hCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCCCCc
Confidence 4799999999999999999965 777899998 999999999999999999999999999999998776
Q ss_pred ----------cccc-----CCcccceeecccCCCCCCCcccccCCC
Q psy2807 97 ----------TLDR-----KPECDLMMEDEFGPVDRLPTRIFLNGP 127 (288)
Q Consensus 97 ----------L~~~-----~~deDvL~~a~fg~~~~l~t~~F~~g~ 127 (288)
++++ .++||+|.|++||+++ ..||...
T Consensus 412 ~~~l~p~~~~~r~~~~~~~~~~edvl~~~l~p~v~----~~f~~~~ 453 (468)
T PRK12581 412 ADQLSPEFEVLKAEVADLAQTDEDVLTYALFPSVA----KPFLTTK 453 (468)
T ss_pred ccccCccHHHHHHHHhhhcCCHHHHHHHHcCcHHH----HHHHHHH
Confidence 1222 6889999999999998 8887543
No 15
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=99.87 E-value=9.8e-22 Score=193.72 Aligned_cols=235 Identities=18% Similarity=0.268 Sum_probs=153.3
Q ss_pred ceecCCCCCCCCceeecccccchhhhHHHHHhccCchhhhhhccc------ccccchhHHHHhccccCCC-------CCC
Q psy2807 14 PVNVSPPHTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENAD------KIIFPKSVSAFFQGSIGEP-------YQG 80 (288)
Q Consensus 14 ~~~~~~~~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~------~~~~p~svv~~l~G~yG~P-------p~g 80 (288)
.||||+|...|+-|.- +|+.|+|+++++. -+++..+++.. .+..-.+|+.|+.-.+.+| -++
T Consensus 365 ~vRvDsGV~~G~~Is~----~YDpMiAKLi~~G-~dR~eAl~rl~~AL~~~~v~Gi~tn~~Fl~al~~~~~F~~g~~~T~ 439 (645)
T COG4770 365 GVRVDSGVREGDEISP----FYDPMIAKLIVHG-ADREEALDRLRRALAEFEVEGIATNIPFLRALMADPRFRGGDLDTG 439 (645)
T ss_pred ceecccCcccCCcccc----ccchHHHHHhhcC-CCHHHHHHHHHHHHHhhEecCccccHHHHHHHhcCcccccCCCcce
Confidence 4899999999999866 9999999999988 78888877764 5677789999999998888 556
Q ss_pred CCHhHHHHhhCCCCccccccCCcccce------------eecccCCCCCCCcccccCCCCCCceeeeeecCCc-eEEEEE
Q psy2807 81 FPKKLQEKVLGSLKDHTLDRKPECDLM------------MEDEFGPVDRLPTRIFLNGPNIGEEFSCEFKTGD-TAYVTT 147 (288)
Q Consensus 81 f~~~l~~~vL~g~~~iL~~~~~deDvL------------~~a~fg~~~~l~t~~F~~g~~~gee~~v~~~~Gk-~~~v~l 147 (288)
|..+.....+...++ .++.+ ..+.-++|+.+. .|-.... ..+..+.+. |+ ...+++
T Consensus 440 ~i~r~~~~~~~~~~~-------~~~~~aa~~~~~~~~~~~~~~~~pw~~~~--~w~~~~~-~~~~~~~~~-~~~~~~v~l 508 (645)
T COG4770 440 FIAREIEDLFAPAPA-------SADALAAAALLAQPALERRAESDPWASLS--GWVVTGD-AAELRVLID-GEERVEVRL 508 (645)
T ss_pred eeeecccccccCCCc-------hhhhHHHHHhhhchhhhcccccCcccccC--Cceeecc-eeeeeEEec-CCcceEEEE
Confidence 666555544421111 11222 011113444332 2211111 112222232 22 333433
Q ss_pred eec-c-c--ccccC-CceEEEEEeCCEEEEEEEeccch---------hhhhhc-c---c-cCCCCCCCeeecCCcEEEEE
Q psy2807 148 LSI-S-E--RLNDH-GERTVFFLYNGQLRSVLIRDKNQ---------AKKLKL-R---S-KADSDTAGEIGAPMPGNIIE 208 (288)
Q Consensus 148 ~~~-~-~--~~~~~-~~~~~~~~vnG~~~~v~v~~~~~---------~~~~~~-~---~-~a~~~~~~~i~apm~G~V~~ 208 (288)
... + . ..+.. ..+...+.++|......+..... .+.... . + +.....++.+.|||||+|++
T Consensus 509 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~aPMpG~v~~ 588 (645)
T COG4770 509 PAREGRERFYVDSDWDPELASAALSGRKRAVRVARAGGGLTLFWGGGSPRIAELDKLGGAKVAAASSGELLAPMPGTVVS 588 (645)
T ss_pred eccCCcceeeeeccCCccceeEEecCccccceeeecCCceEEecCCcCcccccccccccccccCCCCCceecCCCceEEE
Confidence 211 0 0 00000 11345567777777665432211 111110 1 1 12334567899999999999
Q ss_pred EecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 209 VKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 209 v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
+.|++||.|.+||+|++||||||||.|+||.+|+|+++.+++||+|.. ++|+++++
T Consensus 589 v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~~ 645 (645)
T COG4770 589 VAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFEE 645 (645)
T ss_pred EEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEecC
Confidence 999999999999999999999999999999999999999999999999 99999864
No 16
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.84 E-value=7.1e-21 Score=160.54 Aligned_cols=71 Identities=25% Similarity=0.282 Sum_probs=68.1
Q ss_pred CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
+...|+|||+|++++++|++||.|++||+||+||||||||+|.||.+|+|.+|+++.||.|.. |+|+.|++
T Consensus 69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~~ 140 (140)
T COG0511 69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIEP 140 (140)
T ss_pred cCceEecCcceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEecC
Confidence 356799999999999999999999999999999999999999999999999999999999999 99999864
No 17
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.81 E-value=8.2e-19 Score=150.02 Aligned_cols=124 Identities=23% Similarity=0.234 Sum_probs=98.4
Q ss_pred eeeeeecCCceEEEEEeecccccccCCceEEEEEeCCEEEEEEEeccchhh-----h-h----hcccc------------
Q psy2807 132 EFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAK-----K-L----KLRSK------------ 189 (288)
Q Consensus 132 e~~v~~~~Gk~~~v~l~~~~~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~-----~-~----~~~~~------------ 189 (288)
.+.+.+ +|..|.+++...+ .+.+.+.+||+.|.|.+....... . . ...|.
T Consensus 3 ~~~~~~-~g~~~~v~v~~~~-------~~~~~itvnG~~y~V~vee~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~~p~ 74 (153)
T PRK05641 3 KVKVIV-DGVEYEVEVEELG-------PGKFRVSFEGKTYEVEAKGLGIDLSAVQEQVPTPAPAPAPAVPSAPTPVAPAA 74 (153)
T ss_pred eEEEEE-CCEEEEEEEEeec-------CccEEEEECCEEEEEEEEEcccccccccccccccccccCcccccCcccccccC
Confidence 356777 4899988876543 567899999999999886522000 0 0 00010
Q ss_pred ---C-CCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 190 ---A-DSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 190 ---a-~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
+ ...+...|+|||+|+|.+|+|++||.|++||.|+++|+|||+++|.||.+|+|.+++++.||.|.. ++|++|.
T Consensus 75 ~~~~~~~~~~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I~ 153 (153)
T PRK05641 75 PAPAPASAGENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIELG 153 (153)
T ss_pred ccccCCCCCCCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEeC
Confidence 0 111356799999999999999999999999999999999999999999999999999999999999 9999873
No 18
>KOG0238|consensus
Probab=99.80 E-value=1.4e-19 Score=176.58 Aligned_cols=245 Identities=19% Similarity=0.171 Sum_probs=157.2
Q ss_pred ceecCCCCCCCCceeecccccchhhhHHHHHhccCchhhhhhccc------ccccchhHHHHhccccCCC-------CCC
Q psy2807 14 PVNVSPPHTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENAD------KIIFPKSVSAFFQGSIGEP-------YQG 80 (288)
Q Consensus 14 ~~~~~~~~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~------~~~~p~svv~~l~G~yG~P-------p~g 80 (288)
-||||+|.+.||-|.+ .|+.++|+++|+. -+++..+.+.+ .+..-.++++||+-...+| .+.
T Consensus 362 ~vRvdtgV~~g~~vs~----~YDpmiaKlvvwg-~dR~~Al~kl~~aL~~~~I~Gv~tnI~~l~~i~~~~~F~~g~V~T~ 436 (670)
T KOG0238|consen 362 GVRVDTGVRSGDEVSI----HYDPMIAKLVVWG-KDREEALNKLKDALDNYVIRGVPTNIDFLRDIISHPEFAKGNVSTK 436 (670)
T ss_pred CeeeecCcccCCcccc----cccchheeeeEec-CCHHHHHHHHHHHHhhcEEecCccchHHHHHHhcChhhhcCccccc
Confidence 3799999999999999 9999999998887 57776665543 4566689999999998888 888
Q ss_pred CCHhHHHHhhCCCCcc-------------cccc-CCcccceee---cccCCCCCCCccccc------CCCCCCce---ee
Q psy2807 81 FPKKLQEKVLGSLKDH-------------TLDR-KPECDLMME---DEFGPVDRLPTRIFL------NGPNIGEE---FS 134 (288)
Q Consensus 81 f~~~l~~~vL~g~~~i-------------L~~~-~~deDvL~~---a~fg~~~~l~t~~F~------~g~~~gee---~~ 134 (288)
|.+++++..+.++... |... ...-.-+.. ..+..+...|+..|- ..++.++. ..
T Consensus 437 fi~~~~~elf~~~~~~~~~~~~~~a~a~~l~~~~~~~a~~f~~~n~~~~~v~~~~~~~r~n~s~~~~~~~~~~e~~v~v~ 516 (670)
T KOG0238|consen 437 FIPEHQPELFAPESITPAEQLSQAAVASSLNAWASGRAYQFRLQNKDRASVFSSSPPFRFNCSLVVKITLKTGENPVHVA 516 (670)
T ss_pred cchhcCccccCccccCcHHHHHHHHHHHHHHHHhhchhhHHhhccCCccceeccCCceEEEEeeEEEEcccCCccceEEE
Confidence 9999999888875433 0000 000000000 112223333333331 13333332 33
Q ss_pred eeecCCceEEEEEeeccc-----ccccCC-ceEEEEEeC--CEEEEEEEeccc-------hhhhhhc-c--------ccC
Q psy2807 135 CEFKTGDTAYVTTLSISE-----RLNDHG-ERTVFFLYN--GQLRSVLIRDKN-------QAKKLKL-R--------SKA 190 (288)
Q Consensus 135 v~~~~Gk~~~v~l~~~~~-----~~~~~~-~~~~~~~vn--G~~~~v~v~~~~-------~~~~~~~-~--------~~a 190 (288)
|..+.+.++.|.+...+. .++..+ ...+.+..+ |....+.+.... ...+... . .+.
T Consensus 517 V~~~~~s~~si~~~~~~~~~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ve~~~~k~l~~~~s~~ 596 (670)
T KOG0238|consen 517 VRFNSDSSLSIEVDGSSYLTIKGDINVPGPLLSISVDGEGNGYQGRVIILGDEISLFSNEGVIKVEVLPPKYLSPQSSET 596 (670)
T ss_pred EEECCCCeEEEEecCCceEeeccceecccccceEEEEeccCceEEEEEEeCCeEEEEecCcceeEecCChHhhhhhhhhh
Confidence 444455555555443321 111111 112233333 333332222111 0000000 0 112
Q ss_pred CCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 191 DSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 191 ~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
....++.+.|||||.|.+++|++||.|++||.+++|+|||||+.++||.+|+|+.+.++.|++|.. ++|.+++
T Consensus 597 ~~~~s~v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 597 KEDGSGVIVAPMPGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred ccCCCCceecCCCCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 334567799999999999999999999999999999999999999999999999999999999999 9998863
No 19
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.77 E-value=6.3e-18 Score=140.84 Aligned_cols=70 Identities=29% Similarity=0.393 Sum_probs=66.9
Q ss_pred CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
+...|+|||+|+|.+|+|++||.|++||+|++||+|||+++|.||.+|+|.++++++||.|.. ++|++|.
T Consensus 60 ~~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 130 (130)
T PRK06549 60 GADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITIG 130 (130)
T ss_pred CCcEEECCCCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEeC
Confidence 456799999999999999999999999999999999999999999999999999999999999 9999873
No 20
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.75 E-value=5.9e-18 Score=126.56 Aligned_cols=68 Identities=22% Similarity=0.311 Sum_probs=65.6
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
..|+|||+|+|.+|+|++||.|++||+|+++|+|||+++|+||.+|+|.++++++|+.|.. ++|+.|+
T Consensus 3 ~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 3 EDVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred cEEeCCCCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 3699999999999999999999999999999999999999999999999999999999999 9999874
No 21
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.69 E-value=1.8e-16 Score=118.01 Aligned_cols=68 Identities=24% Similarity=0.308 Sum_probs=65.9
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
..|+|||+|+|.+|++++||.|++||+|+++|+|||+.++.||.+|+|.+++++.||.|.. ++|++|+
T Consensus 2 ~~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 2 TKVYASMAGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CeEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 4789999999999999999999999999999999999999999999999999999999999 9999875
No 22
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.67 E-value=2.4e-16 Score=118.95 Aligned_cols=66 Identities=29% Similarity=0.330 Sum_probs=63.0
Q ss_pred eeecCCcEEEEE------EecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEE
Q psy2807 197 EIGAPMPGNIIE------VKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSL 262 (288)
Q Consensus 197 ~i~apm~G~V~~------v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i 262 (288)
+|++|+.|...+ |+|++||.|++||+|+.||+|||+++|+||.+|+|.++++++|+.|.. ++|+.|
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 588999988777 999999999999999999999999999999999999999999999999 999986
No 23
>PRK06748 hypothetical protein; Validated
Probab=99.65 E-value=9.9e-16 Score=118.30 Aligned_cols=70 Identities=11% Similarity=0.115 Sum_probs=65.3
Q ss_pred eeecCCcEEEEEEecCCCCEEecCCEEEEEecc-ceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCC
Q psy2807 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM-KTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVR 266 (288)
Q Consensus 197 ~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam-Kme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~ 266 (288)
.|.|||+|+|.+|++++||.|++||+|++||+| |+..+|.||.+|+|.++++++||.|.. ++|+.|+.-.
T Consensus 6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~~~ 77 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRDDL 77 (83)
T ss_pred EEecCCcEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEECCe
Confidence 589999999999999999999999999999997 456699999999999999999999999 9999997544
No 24
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.60 E-value=3.4e-15 Score=128.21 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=65.7
Q ss_pred CCeeecCCcEEEEE-------EecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 195 AGEIGAPMPGNIIE-------VKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 195 ~~~i~apm~G~V~~-------v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
...|+|||.|++++ |+|++||.|++||+|++||||||+++|+|+.+|+|.+++++.|+.|.. ++|+.|+
T Consensus 80 ~~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 80 GHFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CCEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 35799999999998 799999999999999999999999999999999999999999999999 9999874
No 25
>PRK07051 hypothetical protein; Validated
Probab=99.57 E-value=1.7e-14 Score=110.37 Aligned_cols=68 Identities=25% Similarity=0.255 Sum_probs=65.9
Q ss_pred CeeecCCcEEEEE-------EecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 196 GEIGAPMPGNIIE-------VKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 196 ~~i~apm~G~V~~-------v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
..++||++|++++ +++++||.|++||+++.+|+|||+++|+||.+|+|.++++++|+.|.. ++|++|+
T Consensus 4 ~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred cEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 5799999999999 999999999999999999999999999999999999999999999999 9999985
No 26
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.56 E-value=1.8e-14 Score=131.90 Aligned_cols=70 Identities=20% Similarity=0.225 Sum_probs=67.0
Q ss_pred CCeeecCCcEEEEE-------EecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 195 AGEIGAPMPGNIIE-------VKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 195 ~~~i~apm~G~V~~-------v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
...|.|||+|++++ |+|++||.|++||+|++||+|||+++|+||.+|+|.+++++.||.|.. ++|++|+|
T Consensus 197 ~~~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IEP 274 (274)
T PLN02983 197 HPPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIEP 274 (274)
T ss_pred CCeEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEecC
Confidence 35799999999999 799999999999999999999999999999999999999999999999 99999865
No 27
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.54 E-value=2.9e-14 Score=122.29 Aligned_cols=69 Identities=20% Similarity=0.221 Sum_probs=66.0
Q ss_pred CCeeecCCcEEEEE-------EecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 195 AGEIGAPMPGNIIE-------VKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 195 ~~~i~apm~G~V~~-------v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
...|+|||.|++.. |+|++||.|++||+|+++|||||.++|+||.+|+|.+++++.|+.|.. ++|+.|+
T Consensus 79 ~~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 79 GHVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 35799999999998 899999999999999999999999999999999999999999999999 9999874
No 28
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.51 E-value=1.1e-13 Score=100.04 Aligned_cols=66 Identities=30% Similarity=0.424 Sum_probs=63.3
Q ss_pred eeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEE
Q psy2807 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSL 262 (288)
Q Consensus 197 ~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i 262 (288)
.|+||++|+|.+|++++||.|++||.|+.+++||+..+|+||.+|+|..++++.|+.|.. ++|+.|
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred CccCCccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 378999999999999999999999999999999999999999999999999999999999 998864
No 29
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.44 E-value=4.8e-13 Score=125.68 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=63.4
Q ss_pred cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCCCCCC
Q psy2807 203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVRKTDP 270 (288)
Q Consensus 203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~~~~~ 270 (288)
.|+|++|+|++||.|++||+|+++|+|||+++|+||.+|+|.++.+++|+.|.. ++|+.+++.....+
T Consensus 16 ~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~~~~~ 84 (371)
T PRK14875 16 EGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAEVSDA 84 (371)
T ss_pred eEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCCCCcc
Confidence 599999999999999999999999999999999999999999999999999999 99999986554333
No 30
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.40 E-value=8e-13 Score=143.66 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=66.9
Q ss_pred CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
+...|.|||+|+|++|+|++||.|++||+|++||+||||++|.||.+|+|.++++++||.|.. ++|+.|+
T Consensus 1131 ~~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1131 GAEQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred CCcEEeCCceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 345799999999999999999999999999999999999999999999999999999999999 9999874
No 31
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.35 E-value=5.7e-12 Score=93.82 Aligned_cols=60 Identities=25% Similarity=0.305 Sum_probs=57.7
Q ss_pred cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEE
Q psy2807 203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSL 262 (288)
Q Consensus 203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i 262 (288)
+|++.+|++++||.|++||+|+.+|+|||..+|+||++|+|.+++++.|+.+.. +.|+.|
T Consensus 13 ~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 13 DGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 699999999999999999999999999999999999999999999999999999 998864
No 32
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=99.30 E-value=7.6e-12 Score=122.48 Aligned_cols=68 Identities=24% Similarity=0.297 Sum_probs=62.9
Q ss_pred eecCC-cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 198 IGAPM-PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 198 i~apm-~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
+..-| .|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++||.|.. ++|++|+..
T Consensus 52 lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 52 MGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred CCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence 33445 599999999999999999999999999999999999999999999999999999 999999743
No 33
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=99.30 E-value=7e-12 Score=123.86 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=60.3
Q ss_pred cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
+|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++||.|.. ++|+.|+.
T Consensus 105 eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~ 167 (463)
T PLN02226 105 DGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISK 167 (463)
T ss_pred eEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEecc
Confidence 599999999999999999999999999999999999999999999999999999 99999974
No 34
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=99.17 E-value=8.4e-11 Score=115.05 Aligned_cols=63 Identities=19% Similarity=0.156 Sum_probs=60.7
Q ss_pred cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
.|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|.. ++|++|++.
T Consensus 16 eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~ 79 (407)
T PRK05704 16 EATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEG 79 (407)
T ss_pred eEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 499999999999999999999999999999999999999999999999999999 999999753
No 35
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=99.08 E-value=4.4e-10 Score=109.90 Aligned_cols=63 Identities=21% Similarity=0.211 Sum_probs=60.7
Q ss_pred cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
.|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|.. ++|++|+..
T Consensus 14 eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 14 EGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred eEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 399999999999999999999999999999999999999999999999999999 999999743
No 36
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.07 E-value=6.2e-10 Score=114.46 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=61.2
Q ss_pred cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
.|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++||.|.. ++|++|+..
T Consensus 14 eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 14 EVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA 77 (633)
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence 599999999999999999999999999999999999999999999999999999 999999865
No 37
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.05 E-value=4.2e-10 Score=115.72 Aligned_cols=63 Identities=22% Similarity=0.207 Sum_probs=60.7
Q ss_pred CcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 202 MPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 202 m~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
..|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|.. ++|+.|..
T Consensus 217 ~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~ 280 (633)
T PRK11854 217 DEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEV 280 (633)
T ss_pred cceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEec
Confidence 3699999999999999999999999999999999999999999999999999999 99999973
No 38
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=99.02 E-value=9.7e-10 Score=107.53 Aligned_cols=65 Identities=25% Similarity=0.256 Sum_probs=62.2
Q ss_pred CCc-EEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 201 PMP-GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 201 pm~-G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
-|. |+|++|++++||.|++||+|++||+.|..++|.||.+|+|.+|.+++|+.|.. ++|+.|+..
T Consensus 13 ~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~ 79 (404)
T COG0508 13 TMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEE 79 (404)
T ss_pred ccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecC
Confidence 364 99999999999999999999999999999999999999999999999999999 999999865
No 39
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.97 E-value=2e-09 Score=109.06 Aligned_cols=66 Identities=24% Similarity=0.285 Sum_probs=62.7
Q ss_pred ecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 199 GAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 199 ~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
.++..|+|++|+|++||.|++||+|++||+|||+++|.|+.+|+|.++++++|+.|.. ++|++|+.
T Consensus 9 g~~~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~ 75 (546)
T TIGR01348 9 GDNEEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEV 75 (546)
T ss_pred CCCCceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEec
Confidence 3447899999999999999999999999999999999999999999999999999999 99999974
No 40
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.96 E-value=1.6e-09 Score=109.69 Aligned_cols=62 Identities=29% Similarity=0.310 Sum_probs=59.9
Q ss_pred cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
.|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|.. ++|+.|+.
T Consensus 129 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~ 191 (546)
T TIGR01348 129 KVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSV 191 (546)
T ss_pred eeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEec
Confidence 489999999999999999999999999999999999999999999999999999 99999963
No 41
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=98.94 E-value=3e-09 Score=104.49 Aligned_cols=63 Identities=14% Similarity=0.021 Sum_probs=60.2
Q ss_pred CCc-EEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 201 PMP-GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 201 pm~-G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
.|. |+|++|+|++||.|++||+|+++|+|||++++.||.+|+|.++++++|+.|.. ++|+.|+
T Consensus 9 ~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~ 73 (416)
T PLN02528 9 GIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIM 73 (416)
T ss_pred CccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 343 99999999999999999999999999999999999999999999999999999 9999986
No 42
>KOG0368|consensus
Probab=98.90 E-value=9.6e-09 Score=110.46 Aligned_cols=71 Identities=15% Similarity=0.199 Sum_probs=66.4
Q ss_pred CCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 192 SDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 192 ~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
..++..++||.||++++++|+.|+.|.+||+-+++|.|||.+++.|+.+|+| +...++|+.+.+ ++|+.++
T Consensus 682 enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~ 753 (2196)
T KOG0368|consen 682 ENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLT 753 (2196)
T ss_pred CCCcceecCCCCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEee
Confidence 4457889999999999999999999999999999999999999999999988 577999999999 9999886
No 43
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=98.90 E-value=4e-09 Score=107.71 Aligned_cols=61 Identities=16% Similarity=0.160 Sum_probs=59.7
Q ss_pred cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
.|+|++|+|++||.|++||+|+++|+||+.++|.||.+|+|.+|++++|+.|.. ++|+.|+
T Consensus 149 eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~ 210 (590)
T TIGR02927 149 EGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIG 210 (590)
T ss_pred eEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 599999999999999999999999999999999999999999999999999999 9999996
No 44
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.90 E-value=4e-09 Score=106.82 Aligned_cols=63 Identities=22% Similarity=0.235 Sum_probs=60.4
Q ss_pred cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
.|+|++|++++||.|++||.|+++|+|||.++|+||++|+|.++++++|+.|.. ++|++|...
T Consensus 132 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~ 195 (547)
T PRK11855 132 EVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVA 195 (547)
T ss_pred eeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 399999999999999999999999999999999999999999999999999999 999999743
No 45
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=98.87 E-value=1.7e-08 Score=72.06 Aligned_cols=63 Identities=22% Similarity=0.192 Sum_probs=59.4
Q ss_pred cCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEE
Q psy2807 200 APMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSL 262 (288)
Q Consensus 200 apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i 262 (288)
++-.|++.+|+++.|+.+.+|++++.+++|||...+.||.+|++.+.++..|+.+.. ++|++|
T Consensus 11 ~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 11 SMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 466799999999999999999999999999999999999999999999999999999 998864
No 46
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.87 E-value=9.2e-09 Score=104.19 Aligned_cols=62 Identities=21% Similarity=0.205 Sum_probs=60.1
Q ss_pred cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
.|+|.+|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|.. ++|+.|++
T Consensus 15 ~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~ 77 (547)
T PRK11855 15 EVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEA 77 (547)
T ss_pred eEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEecc
Confidence 499999999999999999999999999999999999999999999999999999 99999974
No 47
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=98.74 E-value=3.7e-08 Score=96.35 Aligned_cols=62 Identities=19% Similarity=0.146 Sum_probs=60.0
Q ss_pred cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
.|+|.+|+|++||.|++||+|+.+|+||+.++|.||.+|+|.++++++|+.|.. ++|+.|..
T Consensus 16 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~ 78 (411)
T PRK11856 16 EGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEE 78 (411)
T ss_pred eEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEec
Confidence 599999999999999999999999999999999999999999999999999999 99999973
No 48
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=98.66 E-value=6.6e-08 Score=95.54 Aligned_cols=61 Identities=18% Similarity=0.103 Sum_probs=59.2
Q ss_pred cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCe-ecc-ceeEEEe
Q psy2807 203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN-FMR-PLQLSLN 263 (288)
Q Consensus 203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~-V~~-~~L~~i~ 263 (288)
.|+|++|++++||.|++||+|+.+|+||+.++|.||.+|++.++++++|+. |.. ++|++|+
T Consensus 13 eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~ 75 (435)
T TIGR01349 13 TGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLV 75 (435)
T ss_pred eEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEe
Confidence 499999999999999999999999999999999999999999999999999 999 9999995
No 49
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=98.63 E-value=1e-07 Score=94.87 Aligned_cols=61 Identities=18% Similarity=0.113 Sum_probs=58.5
Q ss_pred cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCC-eecc-ceeEEEe
Q psy2807 203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDY-NFMR-PLQLSLN 263 (288)
Q Consensus 203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd-~V~~-~~L~~i~ 263 (288)
.|+|.+|++++||.|++||.|+.+|++|+.++|.||.+|+|.++++++|+ .|.. ++|++|+
T Consensus 16 eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~ 78 (464)
T PRK11892 16 EGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLL 78 (464)
T ss_pred eeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEc
Confidence 39999999999999999999999999999999999999999999999995 7999 9999995
No 50
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=98.58 E-value=1.5e-07 Score=96.17 Aligned_cols=62 Identities=21% Similarity=0.142 Sum_probs=59.5
Q ss_pred cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
.|+|.+|+|++||.|++||+|+++|+|||.++|.||.+|+|.++++++|+.|.. ++|+.|..
T Consensus 16 eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~ 78 (590)
T TIGR02927 16 EGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGE 78 (590)
T ss_pred EEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEee
Confidence 499999999999999999999999999999999999999999999999999999 99998853
No 51
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=98.50 E-value=6.2e-07 Score=87.83 Aligned_cols=72 Identities=21% Similarity=0.238 Sum_probs=62.7
Q ss_pred CCCCCeeecCCcEEEEEEe-cCCCCEEecCCEEEEEecc-----------------------------------------
Q psy2807 192 SDTAGEIGAPMPGNIIEVK-AKVGQQVKKNDVLIVMSVM----------------------------------------- 229 (288)
Q Consensus 192 ~~~~~~i~apm~G~V~~v~-V~~Gd~V~~G~~l~~lEam----------------------------------------- 229 (288)
+.....|.|+.+|.|.+++ +++||.|++||+|+.|++-
T Consensus 120 ~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~ 199 (409)
T PRK09783 120 EYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRR 199 (409)
T ss_pred CCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHH
Confidence 3345689999999999998 9999999999999999830
Q ss_pred -------ceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 230 -------KTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 230 -------Kme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
.....|+||++|+|.+..+.+|+.|.+ ++|++|.
T Consensus 200 l~~~~~~~~~~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~ 241 (409)
T PRK09783 200 LIATRKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQ 241 (409)
T ss_pred HHHcCCCCCcEEEECCCCeEEEEEECCCCCEECCCCeEEEEE
Confidence 013579999999999999999999999 9999885
No 52
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=98.50 E-value=2.9e-07 Score=92.97 Aligned_cols=63 Identities=17% Similarity=0.121 Sum_probs=59.0
Q ss_pred CCc-EEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCC-eecc-ceeEEEe
Q psy2807 201 PMP-GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDY-NFMR-PLQLSLN 263 (288)
Q Consensus 201 pm~-G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd-~V~~-~~L~~i~ 263 (288)
.|. |+|.+|++++||.|++||+|+.+|++|..+++.||.+|+|.+|++++|+ .|.. ++|+.+.
T Consensus 123 ~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~ 188 (539)
T PLN02744 123 TMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITV 188 (539)
T ss_pred CcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEEc
Confidence 443 9999999999999999999999999999999999999999999999996 7999 9999883
No 53
>PRK13380 glycine cleavage system protein H; Provisional
Probab=98.49 E-value=1.2e-07 Score=80.63 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=57.1
Q ss_pred eecCCcEEEEEEecC-CCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc---c-----eeEEEecCC
Q psy2807 198 IGAPMPGNIIEVKAK-VGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR---P-----LQLSLNGVR 266 (288)
Q Consensus 198 i~apm~G~V~~v~V~-~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~---~-----~L~~i~~~~ 266 (288)
..+.+.|.|+.+.+. +|+.|++||++++||+|||..+|.||++|+|.+++...-+.-.- + =|+.+.+..
T Consensus 38 ~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~~d 115 (144)
T PRK13380 38 YAQTMAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALEDSPELVNEDPYGEGWFFRFKPAN 115 (144)
T ss_pred HHHHhcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhhChHHhcCCCCCCCeEEEEEECC
Confidence 445688899999987 89999999999999999999999999999999999877665322 2 277776544
No 54
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.45 E-value=4.2e-07 Score=71.72 Aligned_cols=54 Identities=22% Similarity=0.200 Sum_probs=46.9
Q ss_pred CCcEEEEEEecCC-CCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCee
Q psy2807 201 PMPGNIIEVKAKV-GQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNF 254 (288)
Q Consensus 201 pm~G~V~~v~V~~-Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V 254 (288)
.+-|.|..+.... |+.|++||++++||+||+..+|.||++|+|.+++.+..+.-
T Consensus 26 ~~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~p 80 (96)
T cd06848 26 DLLGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDNP 80 (96)
T ss_pred hhCCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcCh
Confidence 4578888865544 99999999999999999999999999999999988776653
No 55
>KOG0559|consensus
Probab=98.43 E-value=1.1e-07 Score=90.62 Aligned_cols=62 Identities=16% Similarity=0.174 Sum_probs=59.4
Q ss_pred cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
.|.+..|+.++||.|++++.|+.||+.|...+|.||.+|+|.+++|++||.|.. +.|+.|++
T Consensus 86 eG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 86 EGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISP 148 (457)
T ss_pred cchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecC
Confidence 377778999999999999999999999999999999999999999999999999 99999986
No 56
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=98.42 E-value=8.6e-07 Score=83.44 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=32.3
Q ss_pred CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
....|.|+.+|.|.+++|++||.|++||+|+.|+.
T Consensus 41 ~~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~ 75 (334)
T TIGR00998 41 NQLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDP 75 (334)
T ss_pred ceEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 34679999999999999999999999999999975
No 57
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=98.34 E-value=1.4e-06 Score=83.06 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=31.8
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
...|.++++|.|.+++|++||.|++||+|+.|+.
T Consensus 48 ~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~ 81 (346)
T PRK10476 48 VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDP 81 (346)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 4579999999999999999999999999999986
No 58
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=98.33 E-value=1.7e-06 Score=81.81 Aligned_cols=68 Identities=26% Similarity=0.257 Sum_probs=59.9
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEeccc---------------------------------------------
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK--------------------------------------------- 230 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamK--------------------------------------------- 230 (288)
..|.++.+|.|.+++|++||.|++||+|+.|+.-.
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a 127 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQA 127 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 46899999999999999999999999999999610
Q ss_pred ------------------------e-eEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 231 ------------------------T-ETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 231 ------------------------m-e~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
. .+.|+||++|+|.++++++|+.|.+ ++|+.|.
T Consensus 128 ~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv 186 (310)
T PRK10559 128 NNVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALV 186 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEE
Confidence 0 2589999999999999999999999 8887764
No 59
>KOG0557|consensus
Probab=98.33 E-value=9.7e-07 Score=86.57 Aligned_cols=67 Identities=21% Similarity=0.205 Sum_probs=61.2
Q ss_pred eeecCCc-EEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCC-Ceecc-ceeEEEe
Q psy2807 197 EIGAPMP-GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLD-YNFMR-PLQLSLN 263 (288)
Q Consensus 197 ~i~apm~-G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~G-d~V~~-~~L~~i~ 263 (288)
.+.+.|. |.|++|..++||.+.+||+||+||+.|..+++.+..+|.+.+|++.+| ..|.. .+|+.|-
T Consensus 45 ALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv 114 (470)
T KOG0557|consen 45 ALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV 114 (470)
T ss_pred CCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence 3566786 999999999999999999999999999999999999999999999999 55666 9998874
No 60
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=98.29 E-value=1.2e-06 Score=71.28 Aligned_cols=51 Identities=22% Similarity=0.368 Sum_probs=43.6
Q ss_pred cEEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCe
Q psy2807 203 PGNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN 253 (288)
Q Consensus 203 ~G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~ 253 (288)
-|.|+.+.+ ++|+.|++||++++||+||+..+|.||++|+|.+++-+..+.
T Consensus 29 lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~~ 80 (110)
T TIGR03077 29 LGNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALEDD 80 (110)
T ss_pred cCCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhC
Confidence 356776665 669999999999999999999999999999999997665554
No 61
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=98.28 E-value=2.2e-06 Score=79.44 Aligned_cols=70 Identities=23% Similarity=0.270 Sum_probs=61.3
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc---------------------------------------------
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM--------------------------------------------- 229 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam--------------------------------------------- 229 (288)
...|.||.+|+|.+++|++||.|++||+|+.|+.-
T Consensus 26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~ 105 (322)
T TIGR01730 26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLD 105 (322)
T ss_pred EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 35799999999999999999999999999999741
Q ss_pred -----------c---------------eeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 230 -----------K---------------TETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 230 -----------K---------------me~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
+ -...|+||++|+|..+.+++|+.+.+ ++|+.|..
T Consensus 106 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~ 167 (322)
T TIGR01730 106 DAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVD 167 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEc
Confidence 0 02479999999999999999999999 99998863
No 62
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=98.26 E-value=1.5e-06 Score=60.69 Aligned_cols=35 Identities=46% Similarity=0.598 Sum_probs=32.1
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEeccc
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK 230 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamK 230 (288)
..|.||++|+|.+|+|++||.|++||+|++|+.-.
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 46899999999999999999999999999998743
No 63
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=98.21 E-value=3.9e-06 Score=81.69 Aligned_cols=68 Identities=12% Similarity=0.092 Sum_probs=58.7
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccc--------------------------------------------
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK-------------------------------------------- 230 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamK-------------------------------------------- 230 (288)
...|.|..+|+|.+++|++||.|++||+|+.|+.-.
T Consensus 65 ~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d 144 (397)
T PRK15030 65 IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYD 144 (397)
T ss_pred EEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 457999999999999999999999999999998410
Q ss_pred --------------------------e-eEEEEcCCCeEEEEEeeCCCCeecc-ce--eEEE
Q psy2807 231 --------------------------T-ETLIHASADGVHKVRSSNLDYNFMR-PL--QLSL 262 (288)
Q Consensus 231 --------------------------m-e~~I~Ap~~G~V~~i~v~~Gd~V~~-~~--L~~i 262 (288)
+ .+.|+||++|+|.+.++++|+.|.+ ++ |+.|
T Consensus 145 ~a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i 206 (397)
T PRK15030 145 QALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATV 206 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEE
Confidence 0 2589999999999999999999988 53 6666
No 64
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=98.20 E-value=4.7e-06 Score=81.16 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=31.9
Q ss_pred CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
+...|.|+.+|.|.+++|++||.|++||+|+.|+.
T Consensus 60 ~~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~ 94 (390)
T PRK15136 60 NQVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDP 94 (390)
T ss_pred eEEEEeccCCeEEEEEEcCCCCEECCCCEEEEECc
Confidence 34579999999999999999999999999999974
No 65
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=98.19 E-value=4.8e-06 Score=80.52 Aligned_cols=69 Identities=17% Similarity=0.163 Sum_probs=59.7
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccc--------------------------------------------
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK-------------------------------------------- 230 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamK-------------------------------------------- 230 (288)
...|.++++|+|.+++|++||.|++||+|+.|+.-.
T Consensus 63 ~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~ 142 (385)
T PRK09578 63 QAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYT 142 (385)
T ss_pred EEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 457999999999999999999999999999998510
Q ss_pred ----------e-----------------eEEEEcCCCeEEEEEeeCCCCeecc-c--eeEEEe
Q psy2807 231 ----------T-----------------ETLIHASADGVHKVRSSNLDYNFMR-P--LQLSLN 263 (288)
Q Consensus 231 ----------m-----------------e~~I~Ap~~G~V~~i~v~~Gd~V~~-~--~L~~i~ 263 (288)
+ .+.|+||++|+|.+.++++|+.|.+ + +|+.|.
T Consensus 143 ~~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~ 205 (385)
T PRK09578 143 EAVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVE 205 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEE
Confidence 0 1589999999999999999999987 3 777774
No 66
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=98.17 E-value=4.9e-06 Score=78.78 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=30.9
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
..|.|+++|.|.+++|++||.|++||+|+.|+.
T Consensus 44 i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~ 76 (331)
T PRK03598 44 VNLGFRVGGRLASLAVDEGDAVKAGQVLGELDA 76 (331)
T ss_pred EEeecccCcEEEEEEcCCCCEEcCCCEEEEECh
Confidence 479999999999999999999999999999973
No 67
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=98.14 E-value=6.8e-06 Score=79.56 Aligned_cols=69 Identities=17% Similarity=0.194 Sum_probs=59.3
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc-----------------------c---------------------
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM-----------------------K--------------------- 230 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam-----------------------K--------------------- 230 (288)
...|.++.+|+|.+++|++||.|++||+|+.|+.- +
T Consensus 61 ~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d 140 (385)
T PRK09859 61 VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYD 140 (385)
T ss_pred EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHH
Confidence 35799999999999999999999999999999841 0
Q ss_pred --------------------------e-eEEEEcCCCeEEEEEeeCCCCeecc-c--eeEEEe
Q psy2807 231 --------------------------T-ETLIHASADGVHKVRSSNLDYNFMR-P--LQLSLN 263 (288)
Q Consensus 231 --------------------------m-e~~I~Ap~~G~V~~i~v~~Gd~V~~-~--~L~~i~ 263 (288)
+ .+.|+||++|+|.+.++.+|+.|.+ + +|+.|.
T Consensus 141 ~a~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~ 203 (385)
T PRK09859 141 TARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQ 203 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEE
Confidence 0 2589999999999999999999987 4 577764
No 68
>PRK00624 glycine cleavage system protein H; Provisional
Probab=98.07 E-value=8.9e-06 Score=66.59 Aligned_cols=65 Identities=17% Similarity=0.226 Sum_probs=49.2
Q ss_pred CcEEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCC---eeccc-----eeEEEecCC
Q psy2807 202 MPGNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDY---NFMRP-----LQLSLNGVR 266 (288)
Q Consensus 202 m~G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd---~V~~~-----~L~~i~~~~ 266 (288)
+-|.|+.+.. ++|+.|++||++++||++|+..+|.||++|+|.+++-..-+ .+..+ =|+.|.+.+
T Consensus 30 ~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~~~ 103 (114)
T PRK00624 30 NLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTALEDDIQPINNAPESEGWFVVVQLDE 103 (114)
T ss_pred hcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEEECC
Confidence 3456777765 56999999999999999999999999999999999644433 33332 267776543
No 69
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=98.04 E-value=1.3e-05 Score=76.97 Aligned_cols=34 Identities=26% Similarity=0.523 Sum_probs=31.8
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
...|.|+++|.|.+++|++||.|++||+|+.|+.
T Consensus 61 ~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 61 KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred EEEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 4579999999999999999999999999999986
No 70
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=98.02 E-value=7e-06 Score=68.33 Aligned_cols=66 Identities=17% Similarity=0.123 Sum_probs=50.4
Q ss_pred CCcEEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc---c-----eeEEEecCC
Q psy2807 201 PMPGNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR---P-----LQLSLNGVR 266 (288)
Q Consensus 201 pm~G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~---~-----~L~~i~~~~ 266 (288)
...|.|..+.. ++|++|++||++++|||||+-.+|.||++|+|.+++-..-+.-.- + =|+.|.+.+
T Consensus 33 ~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~~py~~gWl~~i~~~~ 107 (127)
T TIGR00527 33 DELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALEDSPELVNEDPYGGGWLIKVKLSD 107 (127)
T ss_pred hCCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhhChHHHhCCCccCcEEEEEecCC
Confidence 34556666643 579999999999999999999999999999999988666554322 1 267776544
No 71
>PRK01202 glycine cleavage system protein H; Provisional
Probab=98.00 E-value=2e-05 Score=65.60 Aligned_cols=65 Identities=20% Similarity=0.213 Sum_probs=51.7
Q ss_pred CcEEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCC---Ceecc-----ceeEEEecCC
Q psy2807 202 MPGNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLD---YNFMR-----PLQLSLNGVR 266 (288)
Q Consensus 202 m~G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~G---d~V~~-----~~L~~i~~~~ 266 (288)
.-|.|..+.. +.|+.|++||++++||+||...+|.||++|+|.+++.+.. +.+.. .-|+.|.+.+
T Consensus 35 ~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~~ 108 (127)
T PRK01202 35 QLGDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSD 108 (127)
T ss_pred hcCCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeCC
Confidence 4566766653 5699999999999999999999999999999999955444 55553 2688888654
No 72
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.97 E-value=1.7e-05 Score=77.80 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=59.2
Q ss_pred CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccc-------------------------------------------
Q psy2807 194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK------------------------------------------- 230 (288)
Q Consensus 194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamK------------------------------------------- 230 (288)
+...|.++++|.|.++++++||.|++||+|+.|+.-.
T Consensus 86 ~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~l 165 (415)
T PRK11556 86 NTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQEL 165 (415)
T ss_pred eEEEEEccccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH
Confidence 3467999999999999999999999999999996410
Q ss_pred ---------------------------e-eEEEEcCCCeEEEEEeeCCCCeecc-c--eeEEEe
Q psy2807 231 ---------------------------T-ETLIHASADGVHKVRSSNLDYNFMR-P--LQLSLN 263 (288)
Q Consensus 231 ---------------------------m-e~~I~Ap~~G~V~~i~v~~Gd~V~~-~--~L~~i~ 263 (288)
+ .+.|+||++|+|..+.+++|+.|.+ + +|+.|.
T Consensus 166 d~~~~~~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~ 229 (415)
T PRK11556 166 DAQQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVIT 229 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEe
Confidence 0 2489999999999999999999988 3 566653
No 73
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=97.82 E-value=2.3e-05 Score=72.79 Aligned_cols=34 Identities=32% Similarity=0.548 Sum_probs=24.9
Q ss_pred CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
+...|.|+.+|.| +++|++||.|++||+|+.|+.
T Consensus 20 ~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 20 NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEEC
Confidence 3467999999999 999999999999999999996
No 74
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=97.81 E-value=6.6e-05 Score=70.73 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=30.8
Q ss_pred CeeecCCc---EEEEEEecCCCCEEecCCEEEEEec
Q psy2807 196 GEIGAPMP---GNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 196 ~~i~apm~---G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
..|.|+.+ |+|.+|+|++||.|++||+|+.|+.
T Consensus 14 ~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~ 49 (327)
T TIGR02971 14 VAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDS 49 (327)
T ss_pred EEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecC
Confidence 36889999 9999999999999999999999985
No 75
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=97.66 E-value=0.00021 Score=65.91 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=58.4
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCC
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVR 266 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~ 266 (288)
..-|+||.+|.+.. .++-||.|+|||+|+.++. ++|+||.+|+|. =.++.|-.|.+ --|+.|+|..
T Consensus 164 Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~----~~V~APidGIVr-GlirdG~~V~~G~Ki~dIDPR~ 230 (256)
T TIGR03309 164 ERVLRAPADGIVTP-TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLR-GLIHEGLTVTEGLKIGDVDPRG 230 (256)
T ss_pred eEEEECCCCeEEee-ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEE-EEecCCCCcCCCCEEEEECCCC
Confidence 34699999996665 9999999999999999985 799999999985 46889999999 8899999865
No 76
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.53 E-value=0.00032 Score=67.62 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=30.4
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
...|.||.+|.|.+++|++||.|++||+|+.++
T Consensus 43 ~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld 75 (423)
T TIGR01843 43 VKVVQHLEGGIVREILVREGDRVKAGQVLVELD 75 (423)
T ss_pred eeecccCCCcEEEEEEeCCCCEecCCCeEEEEc
Confidence 346889999999999999999999999999985
No 77
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=97.46 E-value=0.00029 Score=58.16 Aligned_cols=48 Identities=25% Similarity=0.324 Sum_probs=36.1
Q ss_pred EEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCC
Q psy2807 204 GNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLD 251 (288)
Q Consensus 204 G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~G 251 (288)
|.|+.+.+ ++|+.+++|++++.||+.|...+++||++|+|.+++-..-
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l~ 79 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEELL 79 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHHH
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccccc
Confidence 44555543 5599999999999999999999999999999999875443
No 78
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=97.45 E-value=0.0012 Score=55.22 Aligned_cols=66 Identities=21% Similarity=0.213 Sum_probs=44.1
Q ss_pred EEEEEeCCEEEEEEEeccchhhhhhc-cccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEE
Q psy2807 161 TVFFLYNGQLRSVLIRDKNQAKKLKL-RSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM 226 (288)
Q Consensus 161 ~~~~~vnG~~~~v~v~~~~~~~~~~~-~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~l 226 (288)
.+...+.|...++.+..+.....-.. ...........|.||..|+|.+|++++||.|+.||+|+.|
T Consensus 63 ~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 63 AMPSPMPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred EEECCCCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 45566677777776665432211000 0000112346899999999999999999999999999986
No 79
>PRK12784 hypothetical protein; Provisional
Probab=97.45 E-value=0.00074 Score=51.41 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=62.6
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEE-EEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETL-IHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~-I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
..|.||--|+|.++++.+++.|-+=++|+.|+.|.-+.+ |.--++|-|..+.+.+||.+.. .+|+.++.
T Consensus 6 e~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~ed 76 (84)
T PRK12784 6 EEICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLED 76 (84)
T ss_pred hhhcCccccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEee
Confidence 358899999999999999999999999999999865554 7888999999999999999999 99999874
No 80
>KOG0558|consensus
Probab=97.39 E-value=0.00018 Score=68.82 Aligned_cols=60 Identities=22% Similarity=0.079 Sum_probs=57.1
Q ss_pred EEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 204 GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 204 G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
-+|.+|+|++||.|++=|.||++.+.|...+|.+-.+|+|++++.+.+|.... ++|.-++
T Consensus 79 v~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~e 139 (474)
T KOG0558|consen 79 VTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLE 139 (474)
T ss_pred eeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeee
Confidence 47899999999999999999999999999999999999999999999999988 9988776
No 81
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.24 E-value=0.00067 Score=47.29 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=30.7
Q ss_pred EEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 233 TLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 233 ~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
..|.||++|+|.++++++||.|.+ ++|++|+..
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~ 36 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSP 36 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcH
Confidence 579999999999999999999999 999999853
No 82
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=97.22 E-value=0.0012 Score=63.93 Aligned_cols=34 Identities=35% Similarity=0.437 Sum_probs=31.1
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
-..|.+..+|+|.+|+|+.+|.|++||+|+.|+-
T Consensus 53 vv~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~ 86 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDP 86 (352)
T ss_pred EEEEcCcCceEEEEEEecCCCEecCCCeEEEECc
Confidence 3468899999999999999999999999999983
No 83
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=97.20 E-value=0.001 Score=49.38 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=31.2
Q ss_pred CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
....|.||++|+|.++++++||.|+.|++|+.|+
T Consensus 38 ~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 38 MEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred ceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 3567999999999999999999999999999884
No 84
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=97.19 E-value=0.00065 Score=50.13 Aligned_cols=33 Identities=24% Similarity=0.357 Sum_probs=31.2
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
...+.||..|+|.+++++.||.|+.||+|+.||
T Consensus 38 ~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 38 EIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred cceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 467999999999999999999999999999986
No 85
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=97.18 E-value=0.0032 Score=54.14 Aligned_cols=67 Identities=28% Similarity=0.348 Sum_probs=45.0
Q ss_pred ceEEEEEeCCEEEEEEEeccchhhhhh--ccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEE
Q psy2807 159 ERTVFFLYNGQLRSVLIRDKNQAKKLK--LRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM 226 (288)
Q Consensus 159 ~~~~~~~vnG~~~~v~v~~~~~~~~~~--~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~l 226 (288)
...+...+.|+..++.+..+.....-. ..-.+. .....|.||..|+|.+++++.||.|+.||.|+.|
T Consensus 84 ~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEam-Kme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 84 ENVVTAPMPGKILRILVREGQQVKVGQGLLILEAM-KMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeec-ccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 344566667777777666544321100 000111 1235799999999999999999999999999986
No 86
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=96.98 E-value=0.0011 Score=53.10 Aligned_cols=45 Identities=29% Similarity=0.298 Sum_probs=37.7
Q ss_pred EEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeC
Q psy2807 204 GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSN 249 (288)
Q Consensus 204 G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~ 249 (288)
|.-.+..|++||.|++||.|+.-+. -+...|.||++|+|+.|.-.
T Consensus 39 G~~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~~ 83 (101)
T PF13375_consen 39 GAPAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEKR 83 (101)
T ss_pred CCcceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEeee
Confidence 3345678999999999999999886 56789999999999987543
No 87
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.96 E-value=0.0012 Score=55.15 Aligned_cols=51 Identities=25% Similarity=0.277 Sum_probs=42.5
Q ss_pred CcEEEEEE-ecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCC
Q psy2807 202 MPGNIIEV-KAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDY 252 (288)
Q Consensus 202 m~G~V~~v-~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd 252 (288)
+-|.|+-+ +-+.|+.|++|+.+++||+-|.-.+|.||++|+|.+++-..-+
T Consensus 37 ~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~l~~ 88 (131)
T COG0509 37 QLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEALVD 88 (131)
T ss_pred hcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechhhhc
Confidence 34567666 4578999999999999999999999999999999988754433
No 88
>PRK07051 hypothetical protein; Validated
Probab=96.95 E-value=0.0015 Score=49.71 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=30.3
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
..|.||.+|+|.++.+++||.|+.||+|+.|+
T Consensus 48 ~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 48 TEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred EEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 46899999999999999999999999999986
No 89
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.82 E-value=0.0048 Score=58.61 Aligned_cols=51 Identities=25% Similarity=0.322 Sum_probs=43.3
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEecc----ceeEEEEcCCCeEEEEEe
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM----KTETLIHASADGVHKVRS 247 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam----Kme~~I~Ap~~G~V~~i~ 247 (288)
..|.||.+| ++...++.||.|++||+|++|-.. ....+|+||.+|+|....
T Consensus 245 ~~v~A~~~G-~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~ 299 (316)
T cd06252 245 CYVFAPHPG-LFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR 299 (316)
T ss_pred EEEEcCCCe-EEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee
Confidence 568999999 666889999999999999998654 346789999999997655
No 90
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=96.71 E-value=0.0045 Score=56.09 Aligned_cols=54 Identities=15% Similarity=0.136 Sum_probs=35.3
Q ss_pred eecCCcEEEEEEecCCCCEEecCCEEEEEec---cceeEEEEcCCCeEEEEEeeCCCCeecc
Q psy2807 198 IGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV---MKTETLIHASADGVHKVRSSNLDYNFMR 256 (288)
Q Consensus 198 i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa---mKme~~I~Ap~~G~V~~i~v~~Gd~V~~ 256 (288)
|+||+.|.|..+.+++|+.|..|++|+.|-. ++.+..|.....+. ++.|+.+..
T Consensus 91 i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~~~~~i~~~v~~~~~~~-----i~~g~~v~i 147 (265)
T TIGR00999 91 VRSPFDGYITQKSVTLGDYVAPQAELFRVADLGAVWVEAEVPAKDVSR-----IRKGSKATV 147 (265)
T ss_pred EECCCCeEEEEEEcCCCCEeCCCCceEEEEcCCcEEEEEEECHHHHhh-----CCCCCEEEE
Confidence 6888888888888888888888888887643 23333333322232 456776654
No 91
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=96.68 E-value=0.0018 Score=54.64 Aligned_cols=34 Identities=35% Similarity=0.467 Sum_probs=31.8
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
...|.||..|+|.+|+|+.||.|+.||+|+.|+.
T Consensus 107 eneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~~ 140 (140)
T COG0511 107 ENEIEAPADGVVKEILVKNGDPVEYGDPLAVIEP 140 (140)
T ss_pred cceecCCCCcEEEEEEecCCCccCCCCEEEEecC
Confidence 4689999999999999999999999999999873
No 92
>PRK06748 hypothetical protein; Validated
Probab=96.57 E-value=0.0045 Score=47.98 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=31.2
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
..|.||.+|+|.++++++||.|..||+|+.|+.
T Consensus 43 ~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~ 75 (83)
T PRK06748 43 VEIKVGISGYIESLEVVEGQAIADQKLLITVRD 75 (83)
T ss_pred EEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence 489999999999999999999999999999974
No 93
>PF13437 HlyD_3: HlyD family secretion protein
Probab=96.53 E-value=0.0085 Score=46.95 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=30.9
Q ss_pred eeecCCcEEEEEEecCCCCEEecCCEEEEEecc
Q psy2807 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM 229 (288)
Q Consensus 197 ~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam 229 (288)
.|+||+.|.|..+.++.|+.|.+|++|+.|..+
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 489999999999999999999999999999864
No 94
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.50 E-value=0.014 Score=55.14 Aligned_cols=65 Identities=18% Similarity=0.127 Sum_probs=49.3
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc---ceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEE
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM---KTETLIHASADGVHKVRSSNLDYNFMR-PLQLSL 262 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam---Kme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i 262 (288)
...|.||.+| +....++.||.|++||.|+.|=.. ....+|+||.+|+|..+. ..-.|.. +.|+.|
T Consensus 229 ~~~v~A~~~G-l~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p~v~~G~~l~~i 297 (298)
T cd06253 229 VVYVNAETSG-IFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYPLVYEGSLVARI 297 (298)
T ss_pred eEEEEcCCCe-EEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCCeecCCceEEEe
Confidence 3568999999 666779999999999999988653 345689999999996543 4445555 555543
No 95
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=96.48 E-value=0.005 Score=46.09 Aligned_cols=32 Identities=31% Similarity=0.501 Sum_probs=29.8
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEE
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM 226 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~l 226 (288)
...|.||.+|+|.++++++||.|..||+|+.|
T Consensus 43 ~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 43 EMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred ceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 35799999999999999999999999999986
No 96
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=96.38 E-value=0.016 Score=59.73 Aligned_cols=93 Identities=19% Similarity=0.259 Sum_probs=58.7
Q ss_pred ceeeeeecCCceEEEEEeeccccc--------------------ccCCceEEEEEeCCEEEEEEEeccchhhhhh--ccc
Q psy2807 131 EEFSCEFKTGDTAYVTTLSISERL--------------------NDHGERTVFFLYNGQLRSVLIRDKNQAKKLK--LRS 188 (288)
Q Consensus 131 ee~~v~~~~Gk~~~v~l~~~~~~~--------------------~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~--~~~ 188 (288)
.+|.++++ |+.|.|++...+ .. +......+.-.+.|...++.+..+.....-. ..-
T Consensus 478 ~~~~~~vn-G~~~~V~v~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~i 555 (593)
T PRK14040 478 ETYTVEVE-GKAYVVKVSEGG-DISQITPAAPAAAPAAAAAAAPAAAAGEPVTAPLAGNIFKVIVTEGQTVAEGDVLLIL 555 (593)
T ss_pred eEEEEEEC-CEEEEEEECCCC-ccccccccccccccccccccccCCCCCceEECCccEEEEEEEeCCCCEeCCCCEEEEE
Confidence 35788884 999999886543 10 0011224445556666666665443211100 000
Q ss_pred cCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEE
Q psy2807 189 KADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM 226 (288)
Q Consensus 189 ~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~l 226 (288)
.+. .....|.||.+|+|.++++++||.|..||+|+.|
T Consensus 556 Eam-Kme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 592 (593)
T PRK14040 556 EAM-KMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL 592 (593)
T ss_pred ecC-ceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence 111 1245899999999999999999999999999987
No 97
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.35 E-value=0.014 Score=54.68 Aligned_cols=52 Identities=21% Similarity=0.197 Sum_probs=42.6
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc--ceeEEEEcCCCeEEEEEe
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM--KTETLIHASADGVHKVRS 247 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam--Kme~~I~Ap~~G~V~~i~ 247 (288)
...++||-+| ++...++.||.|++||+|+.+=.. .-..+|+||.+|+|.-+.
T Consensus 223 ~~~v~Ap~~G-~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~ 276 (288)
T cd06254 223 VYYVTSPASG-LWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT 276 (288)
T ss_pred CEEEecCCCe-EEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee
Confidence 4568999999 666789999999999999998332 335789999999997665
No 98
>COG3608 Predicted deacylase [General function prediction only]
Probab=96.34 E-value=0.0099 Score=56.96 Aligned_cols=58 Identities=26% Similarity=0.330 Sum_probs=48.7
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc---ceeEEEEcCCCeEEEEEe----eCCCCe
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM---KTETLIHASADGVHKVRS----SNLDYN 253 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam---Kme~~I~Ap~~G~V~~i~----v~~Gd~ 253 (288)
..-+.||-.| ++...|+.||.|++||.|+.+-.+ +.+.+|+|+.+|+|.... ++.||-
T Consensus 256 ~~~i~Ap~~G-~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~~~v~~Gdl 320 (331)
T COG3608 256 DEMIRAPAGG-LVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSLRLVQPGDL 320 (331)
T ss_pred cceeecCCCc-eEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeeccccCCCCe
Confidence 3459999999 778999999999999999999877 667899999999998765 455543
No 99
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=96.32 E-value=0.0033 Score=57.77 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=23.0
Q ss_pred eeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 197 ~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
.|.++..|.|.+++|++||.|++||+|+.|+.
T Consensus 3 ~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~ 34 (305)
T PF00529_consen 3 IVQSLVGGIVTEILVKEGQRVKKGQVLARLDP 34 (305)
T ss_dssp EE--SS-EEEEEE-S-TTEEE-TTSECEEE--
T ss_pred EEeCCCCeEEEEEEccCcCEEeCCCEEEEEEe
Confidence 57899999999999999999999999999985
No 100
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=96.30 E-value=0.018 Score=55.05 Aligned_cols=63 Identities=22% Similarity=0.163 Sum_probs=47.5
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEecc----ceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEE
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM----KTETLIHASADGVHKVRSSNLDYNFMR-PLQLS 261 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam----Kme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~ 261 (288)
.-+.||-+| +....++.||.|++||+|+.|-.. ....+|+||.+|+|...+ ..-.|.. +.|+.
T Consensus 256 ~~v~Ap~~G-i~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~~V~~Gd~l~~ 323 (325)
T TIGR02994 256 CFIFAEDDG-LIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPGLIKSGDCIAV 323 (325)
T ss_pred eEEEcCCCe-EEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCCccCCCCEEEE
Confidence 468999999 555889999999999999988653 246789999999997654 3334444 44443
No 101
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.26 E-value=0.023 Score=53.17 Aligned_cols=63 Identities=22% Similarity=0.184 Sum_probs=46.1
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEecc--ceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEE
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM--KTETLIHASADGVHKVRSSNLDYNFMR-PLQLS 261 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam--Kme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~ 261 (288)
..+.||-+|.+. ..++.||.|++||+|+.+-.. ....+|+||.+|+|..+. ..-.|.. +.|+.
T Consensus 220 ~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~~~v~~G~~l~~ 285 (287)
T cd06251 220 VWVRAPQGGLLR-SLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NLPLVNEGDALFH 285 (287)
T ss_pred eEEecCCCeEEE-EecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CCCccCCCCEEEE
Confidence 368999999655 599999999999999998542 123689999999995443 3334444 44444
No 102
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=96.09 E-value=0.0095 Score=42.31 Aligned_cols=31 Identities=35% Similarity=0.643 Sum_probs=29.1
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEE
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM 226 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~l 226 (288)
..|.||.+|.|.+++++.|+.|.+|++|+.|
T Consensus 37 ~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 37 NEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred EEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 5799999999999999999999999999875
No 103
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=96.00 E-value=0.031 Score=54.22 Aligned_cols=65 Identities=20% Similarity=0.137 Sum_probs=47.3
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc----ceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEE
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM----KTETLIHASADGVHKVRSSNLDYNFMR-PLQLSL 262 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam----Kme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i 262 (288)
...|.||-.| ++...++.||.|++||.|+.|-.. .-+.+|+||.+|+|.. ....-.|.. +.|+.|
T Consensus 289 ~~~v~Ap~~G-l~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~--~~~~~~V~~G~~l~~I 358 (359)
T cd06250 289 VEMLYAPAGG-MVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFA--RASRRFVRAGDELAKI 358 (359)
T ss_pred cEEEeCCCCe-EEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEE--ecCCccccCCCeEEEe
Confidence 3468999999 556789999999999999988542 2233469999999864 444455555 555544
No 104
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=95.85 E-value=0.042 Score=60.71 Aligned_cols=94 Identities=12% Similarity=0.024 Sum_probs=69.5
Q ss_pred EEEEEe-CCEEEEEEEeccchhhhhhccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCC
Q psy2807 161 TVFFLY-NGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASA 239 (288)
Q Consensus 161 ~~~~~v-nG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~ 239 (288)
++.+++ .|+...+++...+ ..+......+...+.|....|.|+.++.+..++.....++. -...|.||.
T Consensus 1012 e~~v~~~~g~~~~i~~~~~~---------~~~~~g~r~v~fElNGq~reV~V~D~s~~~~~~~~~KAd~~-~~~~I~a~~ 1081 (1143)
T TIGR01235 1012 EIEVDIEKGKTLIIKLQAVG---------ATDSQGEREVFFELNGQPRRIKVPDRSHKAEAAVRRKADPG-NPAHVGAPM 1081 (1143)
T ss_pred EEEEEecCCcEEEEEecccc---------ccCCCCcEEEEEEECCeEEEEEecCcccccccccccccccc-cCceeecCC
Confidence 455566 4766666543211 11222335788999999999999999998888765544321 235799999
Q ss_pred CeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 240 DGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 240 ~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
.|+|.++++++||.|.+ ++|++|+.
T Consensus 1082 ~G~v~~~~v~~Gd~V~~Gd~L~~iEa 1107 (1143)
T TIGR01235 1082 PGVIIEVKVSSGQAVNKGDPLVVLEA 1107 (1143)
T ss_pred CcEEEEEEeCCCCEeCCCCEEEEEEe
Confidence 99999999999999999 99999984
No 105
>PRK12999 pyruvate carboxylase; Reviewed
Probab=95.75 E-value=0.043 Score=60.67 Aligned_cols=94 Identities=22% Similarity=0.275 Sum_probs=62.0
Q ss_pred eeeeeecCCceEEEEEeeccc--------ccccCCceEEEEEeCCEEEEEEEeccchhhhhhc--cccCCCCCCCeeecC
Q psy2807 132 EFSCEFKTGDTAYVTTLSISE--------RLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKL--RSKADSDTAGEIGAP 201 (288)
Q Consensus 132 e~~v~~~~Gk~~~v~l~~~~~--------~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~--~~~a~~~~~~~i~ap 201 (288)
++.+++ +|+.+.|++...+. ..+......+...+.|...++.+..+.....-.. .-.+ -.....|.||
T Consensus 1042 ~~~~~v-nG~~~~V~v~d~~~~~~~~~~~~a~~~~~~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~lea-mKme~~i~Ap 1119 (1146)
T PRK12999 1042 TVYFEL-NGQPREVQVRDRSVKSTVAAREKADPGNPGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEA-MKMETTITAP 1119 (1146)
T ss_pred EEEEEE-CCEEEEEEEecCccccccccccccCCCCCceEeCCceEEEEEEEcCCCCEECCCCEEEEEEc-cccceEEecC
Confidence 477888 48888888765320 0111223456667777777777765432211100 0011 1234689999
Q ss_pred CcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 202 MPGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 202 m~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
.+|+|.++.|++||.|+.||.|++||
T Consensus 1120 ~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1120 VDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEc
Confidence 99999999999999999999999986
No 106
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=95.64 E-value=0.015 Score=56.93 Aligned_cols=35 Identities=31% Similarity=0.487 Sum_probs=32.5
Q ss_pred CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
+...|.|+.+|.|.+++|++||.|++||+|+.|+.
T Consensus 57 ~~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~ 91 (421)
T TIGR03794 57 GVDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQ 91 (421)
T ss_pred ceeEEECCCCeEEEEEECCCcCEECCCCEEEEECc
Confidence 34589999999999999999999999999999996
No 107
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=95.64 E-value=0.017 Score=49.54 Aligned_cols=53 Identities=21% Similarity=0.212 Sum_probs=40.0
Q ss_pred eecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEE-EEcCCCeEEEEEeeCC
Q psy2807 198 IGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETL-IHASADGVHKVRSSNL 250 (288)
Q Consensus 198 i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~-I~Ap~~G~V~~i~v~~ 250 (288)
..=|..|..+-..+.+|+.|++|+.|+.+.+-|-|.. ++||++|+|.-+.--+
T Consensus 83 ~l~~veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e~p 136 (150)
T PF09891_consen 83 CLVPVEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIEIP 136 (150)
T ss_dssp EEEEEESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEEET
T ss_pred EEEEecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEecC
Confidence 4457789999999999999999999999999999875 9999999998765333
No 108
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=95.62 E-value=0.055 Score=55.84 Aligned_cols=69 Identities=23% Similarity=0.311 Sum_probs=48.1
Q ss_pred ceEEEEEeCCEEEEEEEeccchhhhhhc-cccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 159 ERTVFFLYNGQLRSVLIRDKNQAKKLKL-RSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 159 ~~~~~~~vnG~~~~v~v~~~~~~~~~~~-~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
...+...+.|+..++.+..+.....-.. ..-........|.||.+|+|.++.+++||.|..||+|+.|+
T Consensus 522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 3456777788888887765543211100 00011123468999999999999999999999999999986
No 109
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=95.59 E-value=0.016 Score=53.69 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=40.2
Q ss_pred ecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCC
Q psy2807 199 GAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNL 250 (288)
Q Consensus 199 ~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~ 250 (288)
.....|..-++.|++||.|++||+|+.=- ---+.-..||.+|+|++|+--+
T Consensus 33 ~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~dK-~~p~v~ftsPvsG~V~~I~RG~ 83 (257)
T PF05896_consen 33 PDDFPGMKPKMLVKEGDRVKAGQPLFEDK-KNPGVKFTSPVSGTVKAINRGE 83 (257)
T ss_pred CcccCCCCccEEeccCCEEeCCCeeEeeC-CCCCcEEecCCCeEEEEEecCC
Confidence 34567888899999999999999999732 1123568999999999987744
No 110
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.29 E-value=0.026 Score=48.49 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=30.8
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
...|.||..|+|.+|+++.|+.|..||+|+.|+
T Consensus 123 ~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 123 MNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred ceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 458999999999999999999999999999875
No 111
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=95.23 E-value=0.023 Score=56.76 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=37.8
Q ss_pred cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEee
Q psy2807 203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSS 248 (288)
Q Consensus 203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v 248 (288)
.|.--+..|++||+|++||+|+.-... +...+.||++|+|+.|.-
T Consensus 37 ~G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 37 VGMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 366667899999999999999986532 578899999999999953
No 112
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=95.11 E-value=0.029 Score=48.22 Aligned_cols=33 Identities=33% Similarity=0.534 Sum_probs=30.9
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
...|.|+..|+|.+|+++.||.|..||+|+.|+
T Consensus 124 ~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 124 MNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred ceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 467999999999999999999999999999885
No 113
>PF13437 HlyD_3: HlyD family secretion protein
Probab=95.10 E-value=0.032 Score=43.61 Aligned_cols=31 Identities=16% Similarity=-0.012 Sum_probs=28.9
Q ss_pred EEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 234 LIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 234 ~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
+|+||++|+|..+.+++|+.|+. ++|+.|.+
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~ 32 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVD 32 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEc
Confidence 48999999999999999999999 99998875
No 114
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=95.09 E-value=0.036 Score=40.69 Aligned_cols=32 Identities=25% Similarity=0.489 Sum_probs=29.4
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEE
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM 226 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~l 226 (288)
...|.||.+|+|.+++++.|+.|..|+.|+.+
T Consensus 42 ~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 42 TSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred EEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 45799999999999999999999999999864
No 115
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.05 E-value=0.085 Score=49.60 Aligned_cols=51 Identities=14% Similarity=0.069 Sum_probs=41.4
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccc--eeEEEEcCCCeEEEEE
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK--TETLIHASADGVHKVR 246 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamK--me~~I~Ap~~G~V~~i 246 (288)
...|.||-+| +....++.|+.|++||.|+.|-..- -..+++||.+|+|..+
T Consensus 231 ~~~v~Ap~~G-i~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 231 RDWVAAIHGG-LFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred eEEEecCCCe-EEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 3468999999 6678899999999999999986431 2356899999999765
No 116
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=94.87 E-value=0.12 Score=53.41 Aligned_cols=68 Identities=24% Similarity=0.323 Sum_probs=46.8
Q ss_pred eEEEEEeCCEEEEEEEeccchhhhhh--ccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 160 RTVFFLYNGQLRSVLIRDKNQAKKLK--LRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 160 ~~~~~~vnG~~~~v~v~~~~~~~~~~--~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
..+.-.+.|...++.+..+.....-. ..-.+.. ....|.||.+|+|.++++++||.|..||+|+.||.
T Consensus 526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEamK-me~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAMK-METEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred CeEecCcceEEEEEEeCCCCEeCCCCEEEEEEecc-eeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 34566667777777766543221100 0001112 34689999999999999999999999999999974
No 117
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=94.78 E-value=0.035 Score=55.46 Aligned_cols=44 Identities=23% Similarity=0.185 Sum_probs=36.8
Q ss_pred EEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEee
Q psy2807 204 GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSS 248 (288)
Q Consensus 204 G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v 248 (288)
|.--+..|++||+|++||+|+.-.+. ....+.||++|+|+.|..
T Consensus 39 G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~ 82 (448)
T PRK05352 39 GLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR 82 (448)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence 55567899999999999999975543 468899999999999953
No 118
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.67 E-value=0.038 Score=54.89 Aligned_cols=33 Identities=30% Similarity=0.300 Sum_probs=31.1
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
..|.++..|.|.+++|++||.|++||+|+.|+.
T Consensus 60 ~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~ 92 (457)
T TIGR01000 60 SKIQSTSNNAIKENYLKENKFVKKGDLLVVYDN 92 (457)
T ss_pred EEEEcCCCcEEEEEEcCCCCEecCCCEEEEECc
Confidence 478999999999999999999999999999986
No 119
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=94.32 E-value=0.25 Score=45.65 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=32.0
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM 229 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam 229 (288)
...|+||++|.|..+.++.|+.|.+|++|+.|...
T Consensus 134 ~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 168 (322)
T TIGR01730 134 YTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDL 168 (322)
T ss_pred cCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcC
Confidence 45799999999999999999999999999998753
No 120
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=94.25 E-value=0.07 Score=50.02 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=32.5
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM 229 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam 229 (288)
...|.||..|+|.++.+++||.|..||+|+.++..
T Consensus 45 ~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~ 79 (371)
T PRK14875 45 TNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADA 79 (371)
T ss_pred eEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecC
Confidence 35799999999999999999999999999999864
No 121
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=94.08 E-value=0.22 Score=48.75 Aligned_cols=75 Identities=31% Similarity=0.342 Sum_probs=51.8
Q ss_pred EEEEeCCEEEEEEEeccchhhhhhccccCCCCCCCeeecCCcEEEEEE-------ecCCCCEEecCCEEE--EEecccee
Q psy2807 162 VFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEV-------KAKVGQQVKKNDVLI--VMSVMKTE 232 (288)
Q Consensus 162 ~~~~vnG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v-------~V~~Gd~V~~G~~l~--~lEamKme 232 (288)
+.++++|.+..+.+..... .+......+.+|.|--+|.|.++ .|++||.|++||+|+ .++....+
T Consensus 162 V~i~~~GT~l~I~v~E~~~------p~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG~i~~~~~~ 235 (385)
T PF06898_consen 162 VGIEIKGTRLIIEVVEKVD------PEEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLISGVIEIEGDE 235 (385)
T ss_pred EEEEEEeeEEEEEEEEcCC------CCcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEeeeEcCCCCc
Confidence 5578889888888865421 12223456789999999999998 589999999999998 45433333
Q ss_pred EEEEcCCCeEEE
Q psy2807 233 TLIHASADGVHK 244 (288)
Q Consensus 233 ~~I~Ap~~G~V~ 244 (288)
.. -+.+|.|.
T Consensus 236 ~~--v~A~G~V~ 245 (385)
T PF06898_consen 236 QE--VHADGDVK 245 (385)
T ss_pred eE--ECCcEEEE
Confidence 33 23445443
No 122
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=93.88 E-value=0.17 Score=44.30 Aligned_cols=97 Identities=12% Similarity=0.152 Sum_probs=52.6
Q ss_pred EEEEEeCCEEEEEE-EeccchhhhhhccccCCCCCCCeeecCCcEEEEEEecCCCCE-Ee--cC-CEEEEEeccceeEEE
Q psy2807 161 TVFFLYNGQLRSVL-IRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQ-VK--KN-DVLIVMSVMKTETLI 235 (288)
Q Consensus 161 ~~~~~vnG~~~~v~-v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~-V~--~G-~~l~~lEamKme~~I 235 (288)
.++--++|+...+. +.|+..+...-..--|-....+.|.||..|+|..+.=..-.. ++ .| +.|..+-- .++
T Consensus 22 ~i~aP~~G~vi~L~~V~D~vFs~k~mGdGvAI~P~~~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLIHiGi----DTV 97 (169)
T PRK09439 22 EIIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGI----DTV 97 (169)
T ss_pred EEEecCCeEEEEhHHCCChHhcccCccceEEEEccCCEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEEEEee----ccc
Confidence 45566778777663 444322111100000112245899999999999885322111 11 13 23333321 011
Q ss_pred EcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 236 HASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 236 ~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
. -+|.=-+.++++||.|.+ ++|++++
T Consensus 98 ~--L~G~gF~~~Vk~Gd~Vk~G~~L~~~D 124 (169)
T PRK09439 98 E--LKGEGFKRIAEEGQRVKVGDPIIEFD 124 (169)
T ss_pred c--cCCCceEEEecCCCEEeCCCEEEEEc
Confidence 1 224445788999999999 9999997
No 123
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=93.84 E-value=0.087 Score=49.12 Aligned_cols=33 Identities=33% Similarity=0.489 Sum_probs=31.0
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
...|.||..|+|.+|+++.||.|..||+|++||
T Consensus 241 eieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 241 MNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred eeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 358999999999999999999999999999986
No 124
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=93.61 E-value=0.18 Score=43.58 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=21.4
Q ss_pred CCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 201 PMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 201 pm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
.+.|.-.+.+|++||+|++||+|+...-
T Consensus 83 ~L~GegF~~~v~~Gd~Vk~Gd~Li~fDl 110 (156)
T COG2190 83 KLNGEGFESLVKEGDKVKAGDPLLEFDL 110 (156)
T ss_pred EECCcceEEEeeCCCEEccCCEEEEECH
Confidence 3445555568999999999999998764
No 125
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=93.59 E-value=0.08 Score=52.58 Aligned_cols=43 Identities=26% Similarity=0.227 Sum_probs=35.7
Q ss_pred EEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEe
Q psy2807 204 GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRS 247 (288)
Q Consensus 204 G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~ 247 (288)
|.--+..|++||+|++||+|+.-+. .....|.||++|+|++|.
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~~-~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKADG-FVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCCC-cceeeeecCCCeEEEEec
Confidence 3445678999999999999998742 357899999999999875
No 126
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=93.44 E-value=0.25 Score=41.00 Aligned_cols=64 Identities=14% Similarity=0.264 Sum_probs=40.2
Q ss_pred CCeeecCCcEEEEEEecCCCCE-Eec--C-CEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQ-VKK--N-DVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~-V~~--G-~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
.+.|.||..|+|..+.-..-.. ++. | +.|..+.. .++. .+|.=-+.++++||.|.+ ++|++++-
T Consensus 35 ~~~v~AP~~G~v~~i~~T~HA~~i~~~~G~eiLiHiGi----dTv~--l~g~gF~~~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 35 DGKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGI----DTVK--LNGEGFTSHVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred CCeEECcCCeEEEEEccCCCEEEEEeCCCcEEEEEeee----eeee--cCCCceEEEecCCCEEcCCCEEEEEcH
Confidence 5789999999998875432222 222 1 23333321 1122 234445788999999999 99999973
No 127
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=93.42 E-value=0.21 Score=51.54 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=53.4
Q ss_pred ceeeeeecCCceEEEEEeeccccccc------------------CCceEEEEEeCCEEEEEEEeccchhhhhh-ccccCC
Q psy2807 131 EEFSCEFKTGDTAYVTTLSISERLND------------------HGERTVFFLYNGQLRSVLIRDKNQAKKLK-LRSKAD 191 (288)
Q Consensus 131 ee~~v~~~~Gk~~~v~l~~~~~~~~~------------------~~~~~~~~~vnG~~~~v~v~~~~~~~~~~-~~~~a~ 191 (288)
.+|.+++ +|+.+.|++...+ .... .....+.--+.|...++.+..+.....-. ..--..
T Consensus 473 ~~~~~~v-nG~~~~V~v~d~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEa 550 (582)
T TIGR01108 473 GSYTVEV-EGKAFVVKVSPGG-DVSQITASAPANTSGGTVAAKAGAGTPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEA 550 (582)
T ss_pred eEEEEEE-CCEEEEEEEcCCc-cccccccccccccccccccCCCCCCCeEeCCccEEEEEEEeCCCCEECCCCEEEEEEe
Confidence 3688888 4999998886542 1110 01123334444555555554432211100 000001
Q ss_pred CCCCCeeecCCcEEEEEEecCCCCEEecCCEE
Q psy2807 192 SDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVL 223 (288)
Q Consensus 192 ~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l 223 (288)
-.....|.||.+|+|.++.+++||.|+.||+|
T Consensus 551 mKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 551 MKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred ccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 12346899999999999999999999999975
No 128
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=93.26 E-value=0.61 Score=40.78 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=26.0
Q ss_pred ecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 199 GAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 199 ~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
+..+.|.=.+++|++||+|++||+|+.+.-
T Consensus 96 TV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D~ 125 (169)
T PRK09439 96 TVELKGEGFKRIAEEGQRVKVGDPIIEFDL 125 (169)
T ss_pred ccccCCCceEEEecCCCEEeCCCEEEEEcH
Confidence 346778889999999999999999998874
No 129
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=93.17 E-value=0.12 Score=48.63 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=31.7
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
...|+||++|+|..+.+++|+.|..|++|+.|..
T Consensus 204 ~~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~ 237 (334)
T TIGR00998 204 RTVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVP 237 (334)
T ss_pred CcEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEc
Confidence 4689999999999999999999999999998865
No 130
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=93.13 E-value=0.62 Score=45.62 Aligned_cols=58 Identities=26% Similarity=0.245 Sum_probs=44.2
Q ss_pred EEEEeCCEEEEEEEeccchhhhhhcccc-CCCCCCCeeecCCcEEEEEE-------ecCCCCEEecCCEEEE
Q psy2807 162 VFFLYNGQLRSVLIRDKNQAKKLKLRSK-ADSDTAGEIGAPMPGNIIEV-------KAKVGQQVKKNDVLIV 225 (288)
Q Consensus 162 ~~~~vnG~~~~v~v~~~~~~~~~~~~~~-a~~~~~~~i~apm~G~V~~v-------~V~~Gd~V~~G~~l~~ 225 (288)
+.+++.|.+..+.+..... .|. .....+.+|.|-..|.|.++ .|++||.|++||.|+.
T Consensus 158 V~v~i~GTrl~i~v~Ek~~------~p~~~~~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIs 223 (382)
T TIGR02876 158 AGVRVRGTTLVIKVVEKQE------PKPVLKKAEPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLIS 223 (382)
T ss_pred EEEEEEeEEEEEEEEecCC------CCCccccCCCccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEEE
Confidence 5578888888888765421 122 23345789999999999998 5899999999999983
No 131
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=92.88 E-value=0.14 Score=51.40 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=32.0
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
...|.||..|+|.+|++++||.|+.||+|+.|+.
T Consensus 134 ~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~ 167 (463)
T PLN02226 134 TIDIASPASGVIQEFLVKEGDTVEPGTKVAIISK 167 (463)
T ss_pred eeEEecCCCeEEEEEEeCCCCEecCCCEEEEecc
Confidence 4689999999999999999999999999999974
No 132
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=92.75 E-value=0.15 Score=48.61 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=32.0
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM 229 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam 229 (288)
...|+||+.|+|.++.+++|+.|..|++|+.|-.+
T Consensus 208 ~~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~ 242 (346)
T PRK10476 208 DTTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDT 242 (346)
T ss_pred cCEEECCCCcEEEeeecCCCCCcCCCCeEEEEecC
Confidence 46899999999999999999999999999988643
No 133
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=92.72 E-value=0.15 Score=49.78 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=30.3
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
..|+||+.|+|..+.+++|+.|..|++|+.|-
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv 247 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVV 247 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEEE
Confidence 58999999999999999999999999999874
No 134
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=92.72 E-value=0.34 Score=46.56 Aligned_cols=60 Identities=10% Similarity=0.045 Sum_probs=43.2
Q ss_pred EEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 205 NIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 205 ~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
.+.-+.|+.|+.-..=..-..+++-+ +..|.|+.+|.|.++++++||.|.+ ++|+.|++.
T Consensus 35 ~v~~~~v~~~~~~~~i~~~G~v~~~~-~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 95 (370)
T PRK11578 35 TYQTLIVRPGDLQQSVLATGKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 95 (370)
T ss_pred ceEEEEEEeeeeEEEEEEEEEEEeee-EEEEecccceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence 45555555555433322334444432 4689999999999999999999999 999999864
No 135
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=92.69 E-value=0.28 Score=48.28 Aligned_cols=60 Identities=8% Similarity=-0.023 Sum_probs=48.9
Q ss_pred EEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 205 NIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 205 ~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
.|.-..++.|+.-..=+....+++. -+..|.++.+|.|.++++++||.|.+ ++|+.|++.
T Consensus 61 ~V~v~~v~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~ 121 (415)
T PRK11556 61 PVQAATATEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPR 121 (415)
T ss_pred ceEEEEEEEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCCCEecCCCEEEEECcH
Confidence 4555666777766555667788874 46789999999999999999999999 999999864
No 136
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=92.55 E-value=0.35 Score=41.73 Aligned_cols=96 Identities=14% Similarity=0.197 Sum_probs=55.1
Q ss_pred eEEEEEeCCEEEEE-EEeccchhhhhhccccCCCCCCCeeecCCcEEEEEEecCC---CCEEecCCEEEE---Eecccee
Q psy2807 160 RTVFFLYNGQLRSV-LIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKV---GQQVKKNDVLIV---MSVMKTE 232 (288)
Q Consensus 160 ~~~~~~vnG~~~~v-~v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v~V~~---Gd~V~~G~~l~~---lEamKme 232 (288)
..++--++|+...+ .|+|.-.+..+-..--|-....+.|.||..|+|..++-.. |=.-..|--|++ |++-+
T Consensus 6 ~~i~sP~~G~vv~Ls~VpD~vFs~k~mGdGiAI~P~~g~vvAPvdG~v~~iFpTkHAigi~t~~GvEiLiHiGiDTV~-- 83 (156)
T COG2190 6 EEIYSPLSGEVVPLSDVPDPVFSEKMVGDGVAIKPSEGEVVAPVDGTVVLIFPTKHAIGIETDEGVEILIHIGIDTVK-- 83 (156)
T ss_pred EEEEccCCceEEEchhCCchHhhcccccCcEEEecCCCeEEeccCcEEEEEeeCCcEEEEEcCCCcEEEEEeceeeEE--
Confidence 34555677777766 3444322111100001222346899999999999874321 222223433332 12222
Q ss_pred EEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 233 TLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 233 ~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
.+|.-=+.++++||.|.. |+|.+++
T Consensus 84 ------L~GegF~~~v~~Gd~Vk~Gd~Li~fD 109 (156)
T COG2190 84 ------LNGEGFESLVKEGDKVKAGDPLLEFD 109 (156)
T ss_pred ------ECCcceEEEeeCCCEEccCCEEEEEC
Confidence 236666889999999999 9999987
No 137
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=92.53 E-value=0.17 Score=50.17 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=32.3
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM 229 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam 229 (288)
...|.||..|+|.++++++||.|+.||+|+.|+.-
T Consensus 87 ~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 87 SVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred EEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence 46899999999999999999999999999999753
No 138
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=92.45 E-value=0.23 Score=55.35 Aligned_cols=69 Identities=19% Similarity=0.310 Sum_probs=46.2
Q ss_pred ceEEEEEeCCEEEEEEEeccchhhhhh-ccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 159 ERTVFFLYNGQLRSVLIRDKNQAKKLK-LRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 159 ~~~~~~~vnG~~~~v~v~~~~~~~~~~-~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
...+.-.+.|..+++.+..+.....-. ...-........|.||..|+|.++++++||.|+.||+|++||
T Consensus 1132 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1132 AEQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred CcEEeCCceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 344556667777777766543221100 000001123467999999999999999999999999999986
No 139
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=92.38 E-value=0.18 Score=45.56 Aligned_cols=13 Identities=8% Similarity=0.156 Sum_probs=6.6
Q ss_pred EEEeCCEEEEEEE
Q psy2807 163 FFLYNGQLRSVLI 175 (288)
Q Consensus 163 ~~~vnG~~~~v~v 175 (288)
.--+||....+.+
T Consensus 92 ~AP~dG~V~~~~~ 104 (265)
T TIGR00999 92 RSPFDGYITQKSV 104 (265)
T ss_pred ECCCCeEEEEEEc
Confidence 4455565554433
No 140
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=92.23 E-value=0.13 Score=49.78 Aligned_cols=42 Identities=24% Similarity=0.233 Sum_probs=33.2
Q ss_pred EEEEecCCCCEEecCCEEEEEeccce--eEEEEcCCCeEEEEEeeCC
Q psy2807 206 IIEVKAKVGQQVKKNDVLIVMSVMKT--ETLIHASADGVHKVRSSNL 250 (288)
Q Consensus 206 V~~v~V~~Gd~V~~G~~l~~lEamKm--e~~I~Ap~~G~V~~i~v~~ 250 (288)
=-+.+|++||.|++||+|++ .|- -.-+.||.+|+|..|+-.+
T Consensus 40 rp~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~ 83 (447)
T COG1726 40 RPSMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGE 83 (447)
T ss_pred CCcceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeeccc
Confidence 34578999999999999996 333 2469999999999887543
No 141
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=92.04 E-value=0.19 Score=46.11 Aligned_cols=32 Identities=31% Similarity=0.443 Sum_probs=30.2
Q ss_pred eeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 197 ~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
.+.++..|.|.+++|++||.|++||.|+.++.
T Consensus 68 ~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 68 EVLARVAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred eEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence 67888899999999999999999999999996
No 142
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=92.02 E-value=0.38 Score=46.60 Aligned_cols=59 Identities=8% Similarity=-0.055 Sum_probs=47.4
Q ss_pred EEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 206 IIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 206 V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
|.-..++.++....-+....+++-+ +..|.++.+|.|.++++++||.|.+ ++|+.|++.
T Consensus 36 V~v~~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 36 VGVVTLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred eEEEEeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcH
Confidence 4445666666555666677777554 6789999999999999999999999 999999864
No 143
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=91.96 E-value=0.23 Score=46.92 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=30.5
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
...|+||++|.|.++.+++|+.|..|++|+.|-
T Consensus 154 ~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv 186 (310)
T PRK10559 154 RTVIRAPADGWVTNLNVYTGEFITRGSTAVALV 186 (310)
T ss_pred CCEEECCCCeEEEeEecCCCCEecCCCeeEEEE
Confidence 468999999999999999999999999999764
No 144
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=91.95 E-value=0.4 Score=46.37 Aligned_cols=59 Identities=7% Similarity=0.076 Sum_probs=45.5
Q ss_pred EEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 206 IIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 206 V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
|.-..|+.++.-..-..-..+++. -+..|.++.+|+|.++++++||.|.+ ++|+.|++.
T Consensus 38 V~v~~v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 38 ATVVTVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred eEEEEEEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCH
Confidence 334455556544444555677754 46789999999999999999999999 999999864
No 145
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=91.93 E-value=0.36 Score=40.54 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=34.1
Q ss_pred CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCC-----CeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASA-----DGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~-----~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
..+.|.||..|+|..+.-. +-.+..-..--.|.-|+=-. +|.-=+.++++||.|.. ++|++++
T Consensus 38 ~~~~v~AP~~G~v~~i~~T-------~HAi~i~s~~G~eiLiHiGidTv~L~G~gF~~~v~~G~~V~~G~~L~~~D 106 (132)
T PF00358_consen 38 SDGKVYAPVDGTVTMIFPT-------KHAIGIRSDNGVEILIHIGIDTVKLNGEGFETLVKEGDKVKAGQPLIEFD 106 (132)
T ss_dssp SSSEEEESSSEEEEEE-TT-------SSEEEEEETTSEEEEEE-SBSGGGGTTTTEEESS-TTSEE-TTEEEEEE-
T ss_pred CCCeEEEEeeEEEEEEcCC-------CCEEEEEeCCCCEEEEEEccchhhcCCcceEEEEeCCCEEECCCEEEEEc
Confidence 3568999999999887532 11222111112222222111 24445678899999999 9999887
No 146
>KOG3373|consensus
Probab=91.88 E-value=0.11 Score=45.11 Aligned_cols=44 Identities=23% Similarity=0.278 Sum_probs=39.4
Q ss_pred ecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCe
Q psy2807 210 KAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN 253 (288)
Q Consensus 210 ~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~ 253 (288)
+=+.|..|.+|+.+..+|+.|.-.+|.+|++|+|++|+-+-.+.
T Consensus 87 LPe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~En 130 (172)
T KOG3373|consen 87 LPEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEEN 130 (172)
T ss_pred cCCCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccccC
Confidence 34789999999999999999999999999999999998766554
No 147
>KOG0559|consensus
Probab=91.86 E-value=0.14 Score=49.70 Aligned_cols=33 Identities=30% Similarity=0.366 Sum_probs=31.0
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
..|.||.+|+|.+++|++||.|+.||.|+.|+-
T Consensus 116 v~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 116 VEVPSPASGVITELLVKDGDTVTPGQKLAKISP 148 (457)
T ss_pred eeccCCCcceeeEEecCCCCcccCCceeEEecC
Confidence 468999999999999999999999999999985
No 148
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=91.82 E-value=0.68 Score=42.81 Aligned_cols=65 Identities=20% Similarity=0.176 Sum_probs=50.0
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEE--EEEecc-c-eeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEE
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVL--IVMSVM-K-TETLIHASADGVHKVRSSNLDYNFMR-PLQLSL 262 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l--~~lEam-K-me~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i 262 (288)
...+.||..| ++...++.||.|++||+| ..+-.. - -..+++||.+|+| +.....-.|.. +.|+.+
T Consensus 220 ~~~~~a~~~G-~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~i--i~~~~~~~v~~G~~l~~v 289 (292)
T PF04952_consen 220 PEWVRAPAGG-LFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGII--IFIRESPYVEQGDALAKV 289 (292)
T ss_dssp CCEEESSSSE-EEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEE--ESECTSSECTTTEEEEEE
T ss_pred ceeecCCccE-EEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEE--EEeCcccccCCCCeEEEE
Confidence 4568999999 668899999999999999 654432 1 2358999999998 46667777777 777665
No 149
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.80 E-value=0.24 Score=47.64 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=30.0
Q ss_pred CCeeecCCcEEEEEEec-CCCCEEecCCEEEEEe
Q psy2807 195 AGEIGAPMPGNIIEVKA-KVGQQVKKNDVLIVMS 227 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V-~~Gd~V~~G~~l~~lE 227 (288)
...|+||++|+|..+.+ ++|+.|..|++|+.|-
T Consensus 271 ~~~i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~ 304 (423)
T TIGR01843 271 RLIIRSPVDGTVQSLKVHTVGGVVQPGETLMEIV 304 (423)
T ss_pred hcEEECCCCcEEEEEEEEccCceecCCCeeEEEe
Confidence 46899999999999986 7999999999999885
No 150
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=91.80 E-value=0.24 Score=48.73 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=31.0
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
..|+||+.|.|.+..+++|+.|..|++|+.|..
T Consensus 210 ~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d 242 (409)
T PRK09783 210 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQG 242 (409)
T ss_pred EEEECCCCeEEEEEECCCCCEECCCCeEEEEEc
Confidence 479999999999999999999999999999865
No 151
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=91.71 E-value=0.32 Score=46.01 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=32.0
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM 229 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam 229 (288)
...|+||++|.|..+.+++|+.|..|++|+.|-.+
T Consensus 203 ~~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~ 237 (331)
T PRK03598 203 DTELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLT 237 (331)
T ss_pred cCEEECCCCeEEEeccCCCCCCcCCCCeEEEEecC
Confidence 46899999999999999999999999999988653
No 152
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=91.69 E-value=0.16 Score=53.54 Aligned_cols=43 Identities=26% Similarity=0.231 Sum_probs=34.9
Q ss_pred EEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEe
Q psy2807 204 GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRS 247 (288)
Q Consensus 204 G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~ 247 (288)
|.--+..|++||+|.+||+|+.-.. -+...|+||++|+|..|.
T Consensus 46 G~~~~~~V~~GD~V~~GQ~i~~~~~-~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 46 GAEGELCVKVGDRVLKGQPLTQGDG-RMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CCCCcceeCcCCEEcCCCEeeecCC-CceeEEeCCCCeEEeeec
Confidence 3444578999999999999997543 246789999999999875
No 153
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=91.67 E-value=0.32 Score=33.80 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=28.6
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEE
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM 226 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~l 226 (288)
..+.||..|++.+++++.|+.+..|++|+.+
T Consensus 44 ~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 44 VEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 5789999999999999999999999999864
No 154
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=91.62 E-value=0.3 Score=41.01 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=21.9
Q ss_pred CCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 201 PMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 201 pm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
-+.|.-.+++|++||+|++||+|+.+.-
T Consensus 80 ~L~G~gF~~~v~~G~~V~~G~~L~~~D~ 107 (132)
T PF00358_consen 80 KLNGEGFETLVKEGDKVKAGQPLIEFDL 107 (132)
T ss_dssp GGTTTTEEESS-TTSEE-TTEEEEEE-H
T ss_pred hcCCcceEEEEeCCCEEECCCEEEEEcH
Confidence 4667788999999999999999998874
No 155
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=91.62 E-value=0.4 Score=46.98 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=30.6
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
..|+||+.|+|..+.+.+|+.|..|++|+.|.
T Consensus 254 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~ 285 (421)
T TIGR03794 254 TRIVSQHSGRVIELNYTPGQLVAAGAPLASLE 285 (421)
T ss_pred CeEEcCCCeEEEEeeCCCCCEecCCCcEEEEE
Confidence 67999999999999999999999999999985
No 156
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=91.55 E-value=0.19 Score=50.87 Aligned_cols=39 Identities=23% Similarity=0.142 Sum_probs=34.8
Q ss_pred EEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEe
Q psy2807 207 IEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRS 247 (288)
Q Consensus 207 ~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~ 247 (288)
....|++||+|.+||+|..=+. -+..++||++|+|.+|.
T Consensus 45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 3578999999999999998776 66789999999999998
No 157
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.17 E-value=0.44 Score=40.27 Aligned_cols=51 Identities=22% Similarity=0.310 Sum_probs=45.1
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEE-EEcCCCeEEEEE
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETL-IHASADGVHKVR 246 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~-I~Ap~~G~V~~i 246 (288)
.-+.-|..|.++..-+..|+.|++|++++-+.+=|-+.. +.+|.+|+|.-+
T Consensus 92 ~ll~iPvEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi 143 (161)
T COG4072 92 ELLLIPVEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI 143 (161)
T ss_pred EEEEEecCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence 345678999999999999999999999999999998876 999999998644
No 158
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=90.85 E-value=0.56 Score=45.74 Aligned_cols=56 Identities=7% Similarity=-0.004 Sum_probs=41.8
Q ss_pred ecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCC
Q psy2807 210 KAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVR 266 (288)
Q Consensus 210 ~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~ 266 (288)
.|+.++.-..-.....+++.. +..|.|..+|.|.++++++||.|.+ ++|+.|++.+
T Consensus 44 ~v~~~~~~~~~~~~G~v~a~~-~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~ 100 (397)
T PRK15030 44 TVKTEPLQITTELPGRTSAYR-IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPAT 100 (397)
T ss_pred eeeEeecceeEEEEEEEEEEE-EEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCHH
Confidence 344444333333445666643 6789999999999999999999999 9999998643
No 159
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=90.85 E-value=0.36 Score=45.37 Aligned_cols=34 Identities=9% Similarity=-0.073 Sum_probs=31.2
Q ss_pred eEEEEcCCC---eEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 232 ETLIHASAD---GVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 232 e~~I~Ap~~---G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
-..|.++.+ |+|.+|+|++||.|.+ ++|++|++.
T Consensus 13 ~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~ 50 (327)
T TIGR02971 13 VVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSR 50 (327)
T ss_pred eEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCc
Confidence 346889999 9999999999999999 999999975
No 160
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=90.67 E-value=0.3 Score=45.19 Aligned_cols=38 Identities=11% Similarity=0.059 Sum_probs=26.3
Q ss_pred EEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 224 IVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 224 ~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
..+++ =+..|.|+.+|.| ++++++||.|.+ ++|++|+.
T Consensus 15 G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 15 GTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp EEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred EEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEEC
Confidence 34444 3578999999999 999999999999 99999974
No 161
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=89.83 E-value=1.3 Score=46.06 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=15.2
Q ss_pred EecCCCCEEecCCEEEEEec
Q psy2807 209 VKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 209 v~V~~Gd~V~~G~~l~~lEa 228 (288)
.+|++||+|++||+|+...-
T Consensus 548 ~~v~~g~~V~~G~~l~~~d~ 567 (610)
T TIGR01995 548 ILVKVGDHVKAGQLLLTFDL 567 (610)
T ss_pred EEecCcCEEcCCCEEEEecH
Confidence 46788888888888887663
No 162
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=89.64 E-value=0.51 Score=46.63 Aligned_cols=35 Identities=29% Similarity=0.299 Sum_probs=32.4
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM 229 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam 229 (288)
...|.||..|+|.++++++||.|..|++|+.|+..
T Consensus 45 ~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~ 79 (407)
T PRK05704 45 VLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEG 79 (407)
T ss_pred eeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 46899999999999999999999999999999864
No 163
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=88.85 E-value=0.98 Score=34.74 Aligned_cols=59 Identities=12% Similarity=0.055 Sum_probs=30.5
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
..|.||++|+|+.+.-.. .-|..+.+--...+.. +.+. +..+.++.||.|.+ +.|+.+.
T Consensus 14 ~~V~A~~~G~V~~~~~~~----~~g~~V~i~~~~g~~~-~y~~----l~~~~v~~G~~V~~G~~IG~~g 73 (96)
T PF01551_consen 14 TPVYAPADGKVVFVGEDP----GYGNYVIIQHGNGYIT-VYGH----LDSVSVKVGDRVKAGQVIGTVG 73 (96)
T ss_dssp -EEEESSSEEEEEEEEET----TTEEEEEEEETTSEEE-EEEE----ESEESS-TTSEE-TTCEEEEEB
T ss_pred CEEEeCccEEEEEEEecc----CCccEEEEEeCCcCCE-EEec----cccccceecccccCCCEEEecC
Confidence 468888888887765422 1122232222222222 2222 34455778888888 8888776
No 164
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=88.59 E-value=0.82 Score=46.92 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=45.3
Q ss_pred eEEEEEeCCEEEEEEEeccchhhhhh-ccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 160 RTVFFLYNGQLRSVLIRDKNQAKKLK-LRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 160 ~~~~~~vnG~~~~v~v~~~~~~~~~~-~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
..+..-+.|...++.|..+.....-. ..-...-.-...|+||-.|+|.++.|++||+|..|++|+.++
T Consensus 576 ~~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~ 644 (645)
T COG4770 576 GELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644 (645)
T ss_pred CceecCCCceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence 34556666777777666543221100 000001123467999999999999999999999999999886
No 165
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=88.55 E-value=0.69 Score=45.67 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=32.4
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM 229 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam 229 (288)
...|.||..|+|.++++++|+.|+.|++|+.|+..
T Consensus 43 ~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 43 VLEVPSPADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred eeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 46899999999999999999999999999999854
No 166
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=88.18 E-value=1.1 Score=46.89 Aligned_cols=64 Identities=13% Similarity=0.201 Sum_probs=40.9
Q ss_pred eeecCCcEEEEEEecCCCCEEe---cCCEEEEEeccceeEEEEcCCCeEEEEE---------------------------
Q psy2807 197 EIGAPMPGNIIEVKAKVGQQVK---KNDVLIVMSVMKTETLIHASADGVHKVR--------------------------- 246 (288)
Q Consensus 197 ~i~apm~G~V~~v~V~~Gd~V~---~G~~l~~lEamKme~~I~Ap~~G~V~~i--------------------------- 246 (288)
.|.||+.|+++.+.=-+...-. -|+-+++.-. +..|.||++|+|..+
T Consensus 500 ~v~aP~~G~vi~l~~v~D~vFs~~~~G~GvaI~P~---~~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~ 576 (648)
T PRK10255 500 ELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPT---DKIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVA 576 (648)
T ss_pred EEEecCCcEEEEcccCcchhhhcccccCcEEEeCC---CCeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhc
Confidence 4677777777765322222221 1555555443 356777777766543
Q ss_pred --------eeCCCCeecc-ceeEEEe
Q psy2807 247 --------SSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 247 --------~v~~Gd~V~~-~~L~~i~ 263 (288)
++++||.|.+ |+|++++
T Consensus 577 l~G~gF~~~Vk~Gd~V~~G~~l~~~D 602 (648)
T PRK10255 577 LEGKGFKRLVEEGAQVSAGQPILEMD 602 (648)
T ss_pred cCCCCceEEecCCCEEcCCCEEEEEc
Confidence 4789999999 9999987
No 167
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=88.16 E-value=1.5 Score=46.96 Aligned_cols=33 Identities=36% Similarity=0.601 Sum_probs=30.8
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
...|.||..|+|.++.|+.||+|..||.|++++
T Consensus 1116 Et~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1116 ETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred ceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence 457999999999999999999999999999875
No 168
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=88.08 E-value=1.8 Score=45.10 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=15.6
Q ss_pred EecCCCCEEecCCEEEEEec
Q psy2807 209 VKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 209 v~V~~Gd~V~~G~~l~~lEa 228 (288)
.+|++||+|++||+|+..+-
T Consensus 564 ~~v~~Gd~V~~G~~l~~~D~ 583 (627)
T PRK09824 564 AHVNVGDKVNTGDLLIEFDI 583 (627)
T ss_pred EEecCCCEEcCCCEEEEEcH
Confidence 36778888888888887764
No 169
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=87.52 E-value=0.61 Score=45.31 Aligned_cols=32 Identities=28% Similarity=0.477 Sum_probs=29.5
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEE
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM 226 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~l 226 (288)
...|+||+.|.|.+..+.+||.|..|.+|+.+
T Consensus 208 ~T~IrAP~dG~V~~~~v~~G~~V~~G~~l~al 239 (352)
T COG1566 208 RTVIRAPVDGYVTNLSVRVGQYVSAGTPLMAL 239 (352)
T ss_pred CCEEECCCCceEEeecccCCCeecCCCceEEE
Confidence 45799999999999999999999999999854
No 170
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=87.31 E-value=3.3 Score=43.39 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=17.6
Q ss_pred EecCCCCEEecCCEEEEEec
Q psy2807 209 VKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 209 v~V~~Gd~V~~G~~l~~lEa 228 (288)
.+|++||+|++||+|+...-
T Consensus 584 ~~Vk~Gd~V~~G~~l~~~D~ 603 (648)
T PRK10255 584 RLVEEGAQVSAGQPILEMDL 603 (648)
T ss_pred EEecCCCEEcCCCEEEEEcH
Confidence 36999999999999998874
No 171
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=87.25 E-value=0.81 Score=45.17 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=32.3
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM 229 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam 229 (288)
...|-||..|+|.++++++||.|.-|++|+.|+.-
T Consensus 45 ~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~ 79 (404)
T COG0508 45 TMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEE 79 (404)
T ss_pred eEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecC
Confidence 35789999999999999999999999999999863
No 172
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=86.78 E-value=1.3 Score=44.11 Aligned_cols=34 Identities=9% Similarity=0.050 Sum_probs=30.9
Q ss_pred EEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCC
Q psy2807 233 TLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVR 266 (288)
Q Consensus 233 ~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~ 266 (288)
..|.++.+|+|.+|+|++||.|.+ ++|+.|++..
T Consensus 60 ~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~ 94 (457)
T TIGR01000 60 SKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNGN 94 (457)
T ss_pred EEEEcCCCcEEEEEEcCCCCEecCCCEEEEECchH
Confidence 478999999999999999999999 9999998643
No 173
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=86.77 E-value=0.76 Score=34.75 Aligned_cols=29 Identities=38% Similarity=0.512 Sum_probs=20.3
Q ss_pred eecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 198 IGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 198 i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
..-|..| +.++++.||.|++||+|++|=+
T Consensus 27 ~ID~~vG--i~l~~k~Gd~V~~Gd~l~~i~~ 55 (75)
T PF07831_consen 27 PIDPAVG--IELHKKVGDRVEKGDPLATIYA 55 (75)
T ss_dssp ---TT-E--EEESS-TTSEEBTTSEEEEEEE
T ss_pred ccCcCcC--eEecCcCcCEECCCCeEEEEEc
Confidence 3335556 4589999999999999998854
No 174
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=86.53 E-value=1.3 Score=46.16 Aligned_cols=21 Identities=10% Similarity=0.083 Sum_probs=18.2
Q ss_pred EEEEeeCCCCeecc-ceeEEEe
Q psy2807 243 HKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 243 V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
==+.++++||.|.+ |+|++++
T Consensus 561 gF~~~v~~Gd~V~~G~~l~~~D 582 (627)
T PRK09824 561 FFTAHVNVGDKVNTGDLLIEFD 582 (627)
T ss_pred CceEEecCCCEEcCCCEEEEEc
Confidence 34678899999999 9999997
No 175
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=86.19 E-value=2.5 Score=37.82 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=40.8
Q ss_pred CCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc--ceeEEEEcCCCeEEEEEeeCCCCeecc
Q psy2807 193 DTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM--KTETLIHASADGVHKVRSSNLDYNFMR 256 (288)
Q Consensus 193 ~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam--Kme~~I~Ap~~G~V~~i~v~~Gd~V~~ 256 (288)
.++..+.||..|+|..+.--..+...++ .+.+.=.| ...|.++||++|+|.++...+|...+.
T Consensus 51 ~~~~~i~SPaDG~v~~i~~v~d~~~~~~-~~~i~i~lsp~d~H~~~aP~~G~V~~~~~~~G~~~~~ 115 (206)
T PRK05305 51 TDDGLVVSPADGKVVVIEEVVPPYGDEP-RLRISIFMSVFNVHVNRAPVSGTVTKVEYRPGKFLNA 115 (206)
T ss_pred CCCCEEEeCCCcEEEEEEEECCCccCCc-eEEEEEEECcccCCEEEeCccCEEEEEEEECCeEEec
Confidence 4567799999999988854333222111 11111122 344788999999999999999985544
No 176
>PRK12784 hypothetical protein; Provisional
Probab=85.42 E-value=1.2 Score=34.22 Aligned_cols=33 Identities=12% Similarity=-0.043 Sum_probs=30.5
Q ss_pred EEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCC
Q psy2807 234 LIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVR 266 (288)
Q Consensus 234 ~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~ 266 (288)
+|.||.-|+|.++.+++++.|-. .+|+.|....
T Consensus 7 ~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~d 40 (84)
T PRK12784 7 EICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNN 40 (84)
T ss_pred hhcCccccEEEEEEEcCCceEEeeeeeeEEeecC
Confidence 59999999999999999999999 9999998655
No 177
>KOG0369|consensus
Probab=84.48 E-value=2.7 Score=44.22 Aligned_cols=93 Identities=15% Similarity=0.222 Sum_probs=55.0
Q ss_pred eeeeeecCCceEEEEEeeccc--------ccccCCceEEEEEeCCEEEEEEEeccchhhhhhccccC---CCCCCCeeec
Q psy2807 132 EFSCEFKTGDTAYVTTLSISE--------RLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKA---DSDTAGEIGA 200 (288)
Q Consensus 132 e~~v~~~~Gk~~~v~l~~~~~--------~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~~~~a---~~~~~~~i~a 200 (288)
++.+++ +|+-..|.+..... ..+.....++---+-|....++|..+..... ..|-+ .-.-...|.|
T Consensus 1072 eVfFeL-NGqlR~i~v~Dk~a~ke~v~~PkA~~~~~g~igAPMpG~vieikvk~G~kV~K--gqpl~VLSAMKMEmVv~s 1148 (1176)
T KOG0369|consen 1072 EVFFEL-NGQLRSIRVADKEAAKEIVTRPKADPGVKGHIGAPMPGTVIEIKVKEGAKVKK--GQPLAVLSAMKMEMVISS 1148 (1176)
T ss_pred EEEEEe-cCceeeEEeechhhhhhhcccccCCCCCcccccCCCCCceEEEEEecCceecC--CCceEeeecceeeeeecC
Confidence 566777 48877777643210 0011111222233445555666654322111 11111 1123457899
Q ss_pred CCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 201 PMPGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 201 pm~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
|+.|+|.++.+..|+.|..||.+++||
T Consensus 1149 P~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1149 PHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred CCCceeeEEEecCCCcccccceEEEcc
Confidence 999999999999999999999999987
No 178
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=83.25 E-value=1.8 Score=42.86 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=31.5
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
...+.||..|+|.+|++++|+.|+.|++|+.|+.
T Consensus 41 ~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~ 74 (416)
T PLN02528 41 TIEITSRYKGKVAQINFSPGDIVKVGETLLKIMV 74 (416)
T ss_pred eEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEec
Confidence 4678999999999999999999999999999974
No 179
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=82.51 E-value=2 Score=42.21 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=32.2
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEeccc
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK 230 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamK 230 (288)
..|.||..|+|.++.+++|+.|..|++|+.|+...
T Consensus 46 ~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 46 VEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred EEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 57999999999999999999999999999997543
No 180
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=82.46 E-value=8.3 Score=31.89 Aligned_cols=63 Identities=14% Similarity=0.251 Sum_probs=37.6
Q ss_pred CCeeecCCcEEEEEEecCCCCE-Ee--cC-CEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQ-VK--KN-DVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~-V~--~G-~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
.+.|.||..|+|..+.-..-.. ++ .| +.|..+-- .++.- +|.=-+.++++||.|.+ ++|++++
T Consensus 35 ~~~v~AP~~G~v~~v~~T~HA~gi~~~~G~evLiHiGi----dTV~L--~G~gF~~~v~~Gd~V~~G~~l~~~D 102 (121)
T TIGR00830 35 DGKVVAPVDGKIGKIFPTKHAFGIESDSGVEILIHIGI----DTVKL--NGEGFTSHVEEGQRVKKGDPLLEFD 102 (121)
T ss_pred CCeEEccCCeEEEEEccCCCEEEEEeCCCcEEEEEeee----ceeec--CCCceEEEecCCCEEcCCCEEEEEc
Confidence 4789999999998875422111 11 12 22333221 11111 23345778999999999 9999987
No 181
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=82.10 E-value=3.4 Score=43.03 Aligned_cols=65 Identities=18% Similarity=0.296 Sum_probs=39.0
Q ss_pred CCCeeecCCcEEEEEEecCCCCE-Ee--cC-CEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 194 TAGEIGAPMPGNIIEVKAKVGQQ-VK--KN-DVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 194 ~~~~i~apm~G~V~~v~V~~Gd~-V~--~G-~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
..+.|.||..|+|..+.=..=.- ++ .| +.|..+-- + ++. -+|.--+.++++||.|.+ |+|.+++-
T Consensus 498 ~~~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eiliHiGi---d-Tv~--l~g~gF~~~v~~g~~V~~G~~l~~~d~ 567 (610)
T TIGR01995 498 TEGEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGI---D-TVE--LNGEGFEILVKVGDHVKAGQLLLTFDL 567 (610)
T ss_pred CCCEEECCCCeEEEEEcCCCCEEEEEECCCcEEEEEecc---c-hhc--cCCCCeEEEecCcCEEcCCCEEEEecH
Confidence 45789999999998874321111 11 12 22322221 0 111 224445788999999999 99999973
No 182
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=81.57 E-value=1.4 Score=36.38 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=24.4
Q ss_pred cCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 200 APMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 200 apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
..+.|.=.+++|++||+|++||+|+.+.-
T Consensus 75 V~L~G~gF~~~v~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 75 VKLNGEGFTSHVEEGQRVKKGDPLLEFDL 103 (121)
T ss_pred eecCCCceEEEecCCCEEcCCCEEEEEcH
Confidence 34566778899999999999999998863
No 183
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=81.52 E-value=4.3 Score=37.10 Aligned_cols=43 Identities=9% Similarity=-0.031 Sum_probs=34.5
Q ss_pred CEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 221 DVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 221 ~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
.....+++ .-...|.++..|.|.++++++||.|.. ++|+.+++
T Consensus 56 ~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 56 RAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred eeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence 33444554 333478888999999999999999999 99999987
No 184
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=80.99 E-value=4.3 Score=36.28 Aligned_cols=59 Identities=8% Similarity=0.098 Sum_probs=43.6
Q ss_pred ecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc--ceeEEE
Q psy2807 199 GAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR--PLQLSL 262 (288)
Q Consensus 199 ~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~--~~L~~i 262 (288)
.+-+.+.|.. .+++|+.+++||.+..++-- ....+.-|.+ .++.+++||.|.. ++|+.+
T Consensus 145 ~~~~~r~I~~-~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi~~~ 205 (206)
T PRK05305 145 AGLIARRIVC-YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVLARL 205 (206)
T ss_pred CeEEccEEEE-eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEEEEc
Confidence 3344455544 57899999999999988743 4666777766 2789999999998 566654
No 185
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=80.63 E-value=2.4 Score=42.30 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=31.8
Q ss_pred CeeecCCcEEEEEEecCCCCE-EecCCEEEEEecc
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQ-VKKNDVLIVMSVM 229 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~-V~~G~~l~~lEam 229 (288)
..|.||..|+|.++++++|+. |..|++|++|+..
T Consensus 43 ~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~ 77 (435)
T TIGR01349 43 MEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEE 77 (435)
T ss_pred eEEcCCCCEEEEEEEECCCCEEecCCCEEEEEecc
Confidence 689999999999999999999 9999999999764
No 186
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=80.07 E-value=11 Score=35.07 Aligned_cols=62 Identities=13% Similarity=-0.044 Sum_probs=40.0
Q ss_pred CCCeeecCCcEEEEEE-ecCCCCEEe---------------------cCCEEEEEeccceeEEEEcCCCeEEEEEeeCCC
Q psy2807 194 TAGEIGAPMPGNIIEV-KAKVGQQVK---------------------KNDVLIVMSVMKTETLIHASADGVHKVRSSNLD 251 (288)
Q Consensus 194 ~~~~i~apm~G~V~~v-~V~~Gd~V~---------------------~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~G 251 (288)
++..|.||..|+|..+ .+++++... .|..+..-=+-...|-++||++|+|.+...-+|
T Consensus 68 ~~~~ivSPaDG~v~~~~~i~~~~~~~vKg~~y~l~~lL~~~~~~~~~~g~~~~iyLsp~dYHr~hsP~~G~v~~~~~ipG 147 (265)
T PRK03934 68 DPNIFISPCDSLITECGSLEEDKALQIKGMEYSIEELLGESNSELVNGFDYINFYLSPKDYHRYHAPCDLEILEARYIPG 147 (265)
T ss_pred CCCEEEECCCcEEEEEEEECCCCEEEECCccccHHHHcCCcchhhcCCcEEEEEEECcceEEEEeccCCcEEEEEEEcCC
Confidence 3456777777777776 455554321 233333323455678899999999999988888
Q ss_pred Ceec
Q psy2807 252 YNFM 255 (288)
Q Consensus 252 d~V~ 255 (288)
+.-+
T Consensus 148 ~~~~ 151 (265)
T PRK03934 148 KLYP 151 (265)
T ss_pred eeec
Confidence 7443
No 187
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=79.56 E-value=1.9 Score=35.79 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=24.0
Q ss_pred cCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 200 APMPGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 200 apm~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
..+.|.=.+++|++||+|++||+|+.+.
T Consensus 75 v~l~g~gF~~~vk~Gd~V~~G~~l~~~D 102 (124)
T cd00210 75 VKLNGEGFTSHVEEGQRVKQGDKLLEFD 102 (124)
T ss_pred eecCCCceEEEecCCCEEcCCCEEEEEc
Confidence 3456777889999999999999999876
No 188
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=78.86 E-value=2.5 Score=39.36 Aligned_cols=40 Identities=18% Similarity=0.340 Sum_probs=34.7
Q ss_pred eeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCCCCCCC
Q psy2807 231 TETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVRKTDPL 271 (288)
Q Consensus 231 me~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~~~~~~ 271 (288)
-|.-|+||.+|++.. .++-||.|.+ +.|+.++..+-..|.
T Consensus 163 ~Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~~~V~APi 203 (256)
T TIGR03309 163 HERVLRAPADGIVTP-TKAIGDSVKKGDVIATVGDVPVVAPI 203 (256)
T ss_pred ceEEEECCCCeEEee-ccCCCCEEeCCCEEEEEcCEEEEccC
Confidence 377899999999976 9999999999 999999876666665
No 189
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=78.65 E-value=7.3 Score=34.34 Aligned_cols=62 Identities=15% Similarity=0.027 Sum_probs=41.4
Q ss_pred CCCCeeecCCcEEEEEEecCCCCEEecCCEEEE-E-eccceeEEEEcCCCeEEEEEeeCCCCeec
Q psy2807 193 DTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIV-M-SVMKTETLIHASADGVHKVRSSNLDYNFM 255 (288)
Q Consensus 193 ~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~-l-EamKme~~I~Ap~~G~V~~i~v~~Gd~V~ 255 (288)
.++..|.||..|+|..+.- .-+....|+.+.+ + =+-...|-++||++|+|.++...+|+...
T Consensus 32 ~~~~~ivSPaDG~v~~i~~-~~~~~~~g~~~~i~I~Lsp~DyHr~haP~~G~v~~~~~~~G~~~~ 95 (189)
T TIGR00164 32 QGPEAVLSPADGRIDVVER-ARRPFPDGDGLKISIFMSPFDVHVNRAPAGGKVTYVKHIDGSFVP 95 (189)
T ss_pred CCCCEEEeCCCcEEEEEEe-eccccCCCcEEEEEEEcCCcccceEEcccccEEEEEEEECCeEee
Confidence 4567799999999987631 1112223433332 1 24456788999999999999999997554
No 190
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=78.45 E-value=0.32 Score=39.28 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=45.0
Q ss_pred eecCCCCCCCCceeecccccchhhhHHHHHhccCchhhhhhccc------ccccchhHHHHhccccCCC
Q psy2807 15 VNVSPPHTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENAD------KIIFPKSVSAFFQGSIGEP 77 (288)
Q Consensus 15 ~~~~~~~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~------~~~~p~svv~~l~G~yG~P 77 (288)
||+|++...|+-| ++.|+.++|+++|+. -+++...++.. .+...++++.|++..+.+|
T Consensus 31 vR~Dt~~~~G~~v----~~~yDsmlAKliv~g-~~R~~A~~rl~~aL~e~~i~Gv~TN~~~l~~ll~~~ 94 (107)
T smart00878 31 VRVDSGVYEGYEV----PPYYDSMIAKLIVHG-ETREEAIARLRRALDEFRIEGVKTNIPFLRALLRHP 94 (107)
T ss_pred EEEEccCcCCCCc----CcchhhhceEEEEEc-CCHHHHHHHHHHHHHhCEEECccCCHHHHHHHhcCH
Confidence 8999999999854 449999999998886 67777766653 4566788888888876654
No 191
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=77.11 E-value=7.9 Score=34.13 Aligned_cols=55 Identities=9% Similarity=0.125 Sum_probs=41.3
Q ss_pred cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc--ceeEEE
Q psy2807 203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR--PLQLSL 262 (288)
Q Consensus 203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~--~~L~~i 262 (288)
.+.|+. .+++|+.+++||.+..++ +-....+..|.+ .++.+++||.|.. ++|+.+
T Consensus 129 ~~~i~~-~~~~g~~v~kGeeiG~f~-fGStv~ll~p~~---~~~~v~~G~~V~~G~tli~~~ 185 (189)
T TIGR00164 129 ARRIVC-YVKEGEKVSRGQRIGMIR-FGSRVDLYLPEN---AQAQVKVGEKVTAGETVLARL 185 (189)
T ss_pred ccEEEE-ecCCCCEEecCcEEEEEe-cCCeEEEEEcCC---CccccCCCCEEEeceEEEEEe
Confidence 344433 568999999999999887 335667777876 3788999999998 566654
No 192
>PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis. It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A ....
Probab=76.95 E-value=0.12 Score=41.82 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=48.0
Q ss_pred cceecCCCCCCCCceeecccccchhhhHHHHHhccCchhhhhhccc------ccccchhHHHHhccccCCC
Q psy2807 13 VPVNVSPPHTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENAD------KIIFPKSVSAFFQGSIGEP 77 (288)
Q Consensus 13 ~~~~~~~~~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~------~~~~p~svv~~l~G~yG~P 77 (288)
--||||++...|+-|.- .|..++|+.+|+. -+++...++.. .+...+++++|++..+.+|
T Consensus 29 ~gvRvDt~~~~G~~v~~----~yDsmiaKliv~g-~~R~~Ai~~l~~AL~e~~I~Gv~TNi~fl~~ll~~~ 94 (107)
T PF02785_consen 29 PGVRVDTGVYSGYEVSP----YYDSMIAKLIVHG-PDREEAIARLRRALAETVIEGVKTNIPFLRALLAHP 94 (107)
T ss_dssp TTEEEEESESTTCEE-S----SSSSEEEEEEEEE-SSHHHHHHHHHHHHHHHEEESSSHSHHHHHHHHTSH
T ss_pred CCeeEEecCccccccCC----Cchhhhhhheeec-cchHHHHHHHHhhcceEEEECccCCHHHHHHHhCCc
Confidence 34899999999996544 9999999998876 57877776654 5777899999999888766
No 193
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=76.48 E-value=3.3 Score=31.87 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=20.1
Q ss_pred EEEEEEecCCCCEEecCCEEEEEec
Q psy2807 204 GNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 204 G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
|.-++|++++|+.|++||+|+.++.
T Consensus 44 ~~~v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 44 GLEVEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp TEEEEESS-TT-EEETTCEEEEEEE
T ss_pred cEEEEEEeCCCCCccCCcEEEEEEe
Confidence 5567799999999999999999874
No 194
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=72.07 E-value=5 Score=40.41 Aligned_cols=33 Identities=24% Similarity=0.218 Sum_probs=30.5
Q ss_pred CeeecCCcEEEEEEecCCCC-EEecCCEEEEEec
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQ-QVKKNDVLIVMSV 228 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd-~V~~G~~l~~lEa 228 (288)
..+.||..|+|.++++++|+ .|+.|++|++|+.
T Consensus 46 ~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~ 79 (464)
T PRK11892 46 MEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLE 79 (464)
T ss_pred eeecCCCceEEEEEEecCCCcEeCCCCEEEEEcc
Confidence 67899999999999999996 7999999999975
No 195
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=67.19 E-value=6.2 Score=40.55 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=30.3
Q ss_pred CCeeecCCcEEEEEEecCCCC-EEecCCEEEEEec
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQ-QVKKNDVLIVMSV 228 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd-~V~~G~~l~~lEa 228 (288)
..++.||-.|+|.++++++|+ .|+.|++|+++..
T Consensus 155 ~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~~ 189 (539)
T PLN02744 155 TVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITVE 189 (539)
T ss_pred eeEecCCCCcEEEEEEecCCCcccCCCCEEEEEcc
Confidence 367899999999999999996 7999999998843
No 196
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=66.78 E-value=8.5 Score=39.14 Aligned_cols=33 Identities=39% Similarity=0.560 Sum_probs=23.2
Q ss_pred CeeecCCcEEEEEE------------------------ecCCCCEEecCCEEEEEec
Q psy2807 196 GEIGAPMPGNIIEV------------------------KAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 196 ~~i~apm~G~V~~v------------------------~V~~Gd~V~~G~~l~~lEa 228 (288)
..|.||-.|+|..+ +++.||+|++||+|++|=|
T Consensus 414 ~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a 470 (493)
T TIGR02645 414 ADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYA 470 (493)
T ss_pred EEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEEC
Confidence 35789999999885 5666666666666666543
No 197
>PRK04350 thymidine phosphorylase; Provisional
Probab=65.41 E-value=9.3 Score=38.82 Aligned_cols=33 Identities=33% Similarity=0.574 Sum_probs=24.6
Q ss_pred CeeecCCcEEEEEE------------------------ecCCCCEEecCCEEEEEec
Q psy2807 196 GEIGAPMPGNIIEV------------------------KAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 196 ~~i~apm~G~V~~v------------------------~V~~Gd~V~~G~~l~~lEa 228 (288)
..|.||..|+|..+ +++.||.|++||+|++|=|
T Consensus 406 ~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a 462 (490)
T PRK04350 406 HDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHA 462 (490)
T ss_pred EEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEec
Confidence 35889999999885 5677777777777776654
No 198
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=64.62 E-value=9.7 Score=38.16 Aligned_cols=13 Identities=23% Similarity=0.253 Sum_probs=9.8
Q ss_pred eeecCCcEEEEEE
Q psy2807 197 EIGAPMPGNIIEV 209 (288)
Q Consensus 197 ~i~apm~G~V~~v 209 (288)
.|.|+..|.|.++
T Consensus 341 ~v~A~~~G~v~~i 353 (437)
T TIGR02643 341 PVYADREGYVSEM 353 (437)
T ss_pred EEECCCCeEEEEe
Confidence 5678888888775
No 199
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=62.99 E-value=11 Score=38.47 Aligned_cols=33 Identities=36% Similarity=0.558 Sum_probs=24.6
Q ss_pred CeeecCCcEEEEEE------------------------ecCCCCEEecCCEEEEEec
Q psy2807 196 GEIGAPMPGNIIEV------------------------KAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 196 ~~i~apm~G~V~~v------------------------~V~~Gd~V~~G~~l~~lEa 228 (288)
..|.||-.|+|..+ +++.||.|++||+|++|=|
T Consensus 415 ~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a 471 (500)
T TIGR03327 415 YTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYA 471 (500)
T ss_pred EEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEEC
Confidence 35788999998875 5677777777777777654
No 200
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=62.56 E-value=31 Score=30.43 Aligned_cols=62 Identities=11% Similarity=0.073 Sum_probs=39.7
Q ss_pred CCeeecCCcEEEEEE-ecCCCCEEe-----------------------cCCEEEEEeccceeEEEEcCCCeEEEEEeeCC
Q psy2807 195 AGEIGAPMPGNIIEV-KAKVGQQVK-----------------------KNDVLIVMSVMKTETLIHASADGVHKVRSSNL 250 (288)
Q Consensus 195 ~~~i~apm~G~V~~v-~V~~Gd~V~-----------------------~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~ 250 (288)
+..|.||..|+|..+ .++.++.+. .|..+..-=+-.--|-.+||.+|+|.+...-+
T Consensus 20 ~~~ivSPaDG~v~~~~~i~~~~~~~iKg~~y~l~~ll~~~~~~~~~~~~g~~i~i~Lsp~DyHr~haPv~G~v~~~~~i~ 99 (202)
T PF02666_consen 20 PDAIVSPADGKVLVIGEIEEDSLFQIKGQPYSLRELLGDPSPLAEPFQGGTFIVIYLSPFDYHRNHAPVDGRVEEVRYIP 99 (202)
T ss_pred CCEEEeCcCcEEEeeEEECCCceEEEecCcCCHHHHhCccccceeccCCceEEEEEcCCCcceEEEecCCEEEEEEEEEC
Confidence 347888888888887 554433221 12222221122334779999999999999999
Q ss_pred CCeecc
Q psy2807 251 DYNFMR 256 (288)
Q Consensus 251 Gd~V~~ 256 (288)
|+..+.
T Consensus 100 G~~~~v 105 (202)
T PF02666_consen 100 GKLLPV 105 (202)
T ss_pred cccccc
Confidence 988654
No 201
>PRK11637 AmiB activator; Provisional
Probab=60.37 E-value=12 Score=36.80 Aligned_cols=60 Identities=10% Similarity=-0.018 Sum_probs=33.3
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
...|.|+.+|+|+.+..-. .-|..| +|+=-.--..+.+.. ..+.|.+||.|.. ++|+.+.
T Consensus 339 g~~v~A~~~G~V~~~~~~~----~~G~~v-ii~hg~g~~t~Y~~~----~~~~v~~G~~V~~G~~ig~~g 399 (428)
T PRK11637 339 GTEVKAIADGRVLLADWLQ----GYGLVV-VVEHGKGDMSLYGYN----QSALVSVGAQVRAGQPIALVG 399 (428)
T ss_pred CCeEEecCCeEEEEeeccC----CcccEE-EEEeCCCcEEEccCC----CcCCCCCcCEECCCCeEEeec
Confidence 3468888888887652211 123333 333222223444442 3456778888877 8777775
No 202
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=58.74 E-value=14 Score=37.04 Aligned_cols=20 Identities=20% Similarity=0.484 Sum_probs=14.2
Q ss_pred EecCCCCEEecCCEEEEEec
Q psy2807 209 VKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 209 v~V~~Gd~V~~G~~l~~lEa 228 (288)
++++.||.|++||+|++|=+
T Consensus 385 l~~k~G~~V~~Gd~l~~i~~ 404 (440)
T PRK05820 385 LHARLGDRVDAGEPLATLHA 404 (440)
T ss_pred EccCCcCEECCCCeEEEEeC
Confidence 45777777777777777654
No 203
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=57.87 E-value=26 Score=30.99 Aligned_cols=62 Identities=19% Similarity=0.147 Sum_probs=44.9
Q ss_pred eeecCCcEEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeE
Q psy2807 197 EIGAPMPGNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQL 260 (288)
Q Consensus 197 ~i~apm~G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~ 260 (288)
.|.|-+-|+|+-..- ++|+.|++||.+..++- --...+--|.+ .+.+..+++|+.|.. +.|+
T Consensus 138 ~Vga~~v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~-~~~~~~v~~g~~V~~Ge~i~ 201 (202)
T PF02666_consen 138 QVGALLVGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKD-KIFEWSVKPGQKVRAGETIG 201 (202)
T ss_pred EeccceeceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCC-CccccccCCCCEEEeeeEEe
Confidence 467777788876654 69999999999998873 33344444433 333889999999988 7765
No 204
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=57.61 E-value=73 Score=29.08 Aligned_cols=62 Identities=15% Similarity=0.105 Sum_probs=39.9
Q ss_pred CCCeeecCCcEEEEEE-ecCCCCEEe-----------------------cCC-EEEEEeccceeEEEEcCCCeEEEEEee
Q psy2807 194 TAGEIGAPMPGNIIEV-KAKVGQQVK-----------------------KND-VLIVMSVMKTETLIHASADGVHKVRSS 248 (288)
Q Consensus 194 ~~~~i~apm~G~V~~v-~V~~Gd~V~-----------------------~G~-~l~~lEamKme~~I~Ap~~G~V~~i~v 248 (288)
++..|.||..|+|..+ .++.++.+. .|. -+..-=+-.-.|-++||++|+|.+...
T Consensus 33 ~~~~ivSPaDG~v~~~~~i~~~~~~~vKG~~ysl~~lL~~~~~~~~~f~~G~~~i~iyLsp~DYHr~hsPv~G~v~~~~~ 112 (238)
T TIGR00163 33 EPNALVSPADGVISEVGIINPNQILQVKGMDYSLEELLGEKNPLSPYFRNGGFFVVTYLSPRDYHRFHSPCDCRLRKMRY 112 (238)
T ss_pred CCCEEEECCCceeEEEEEecCCcEEEEcCCcccHHHHcCCChhHHHhccCCeEEEEEEECccceeEEeccCCcEEEEEEE
Confidence 4566888888888877 455554321 011 111112345568899999999999988
Q ss_pred CCCCeec
Q psy2807 249 NLDYNFM 255 (288)
Q Consensus 249 ~~Gd~V~ 255 (288)
-+|+.-+
T Consensus 113 ipG~~~~ 119 (238)
T TIGR00163 113 FPGDLFS 119 (238)
T ss_pred cCccEec
Confidence 8887543
No 205
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=55.62 E-value=18 Score=35.96 Aligned_cols=14 Identities=36% Similarity=0.472 Sum_probs=10.8
Q ss_pred CeeecCCcEEEEEE
Q psy2807 196 GEIGAPMPGNIIEV 209 (288)
Q Consensus 196 ~~i~apm~G~V~~v 209 (288)
..|.||-.|+|..+
T Consensus 334 ~~v~a~~~G~v~~i 347 (405)
T TIGR02644 334 EEVKAEKSGYISEI 347 (405)
T ss_pred EEEECCCCeEEEEe
Confidence 35788888888875
No 206
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=55.03 E-value=65 Score=29.83 Aligned_cols=24 Identities=13% Similarity=-0.033 Sum_probs=18.4
Q ss_pred ceeEEEEcCCCeEEEEEeeCCCCe
Q psy2807 230 KTETLIHASADGVHKVRSSNLDYN 253 (288)
Q Consensus 230 Kme~~I~Ap~~G~V~~i~v~~Gd~ 253 (288)
+-.|-.+||++|+|.+...-.|..
T Consensus 136 ~DYHr~h~Pv~G~v~~~~~i~G~l 159 (259)
T PRK03140 136 SHYHRIHSPISGTVTEQFVLGRKS 159 (259)
T ss_pred cceEEEeccCCcEEEEEEECCCce
Confidence 445788899999888887777754
No 207
>KOG0238|consensus
Probab=52.85 E-value=12 Score=38.40 Aligned_cols=30 Identities=13% Similarity=0.005 Sum_probs=27.6
Q ss_pred EEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 234 LIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 234 ~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
.+.||..|+|.++++++||.|.. +.|..+.
T Consensus 603 v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~ 633 (670)
T KOG0238|consen 603 VIVAPMPGIIEKVLVKPGDKVKEGQELVVLI 633 (670)
T ss_pred ceecCCCCeeeeeeccchhhhcccCceEEEE
Confidence 58999999999999999999999 8877776
No 208
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=52.17 E-value=13 Score=37.02 Aligned_cols=62 Identities=5% Similarity=-0.063 Sum_probs=39.9
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
...|.||-+|+|+=- |.-=.-| .+++|+.-+-.+.|.+-- ..|.|++|+.|.. ++|+.+...
T Consensus 331 Ga~V~A~AdG~VvyA----~~l~GYG-~vvIldhG~gy~slyg~~----~~i~v~~G~~V~AGepIa~~G~s 393 (420)
T COG4942 331 GATVKAIADGRVVYA----DWLRGYG-LVVILDHGGGYHSLYGGN----QSILVNPGQFVKAGEPIALVGSS 393 (420)
T ss_pred CCeeeeecCceEEec----hhhccCc-eEEEEEcCCccEEEeccc----ceeeecCCCEeecCCchhhccCC
Confidence 357888888887531 1111122 345677777777776643 4577888888888 888888643
No 209
>PRK02693 apocytochrome f; Reviewed
Probab=51.22 E-value=66 Score=30.55 Aligned_cols=76 Identities=12% Similarity=0.146 Sum_probs=49.8
Q ss_pred ccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCC
Q psy2807 188 SKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVR 266 (288)
Q Consensus 188 ~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~ 266 (288)
|....++.....|+..|+|.+|.-. ++|.-.++|++-.-+..+..=-.| -++.|++||.|.. ++|.
T Consensus 189 P~G~kSNN~v~~as~~G~i~~I~~~-----e~Gg~~vtI~~~dG~~v~~~iP~G--peliV~eG~~v~~dqpLT------ 255 (312)
T PRK02693 189 PTGEKSNNNVFTASAAGTITSIETG-----EDGGYVVTITTEDGEAVTETIPAG--PELIVKEGDTVEAGDPLT------ 255 (312)
T ss_pred CCCccccCceecccCCcEEEEEEec-----CCCceEEEEEcCCCCEEEEecCCC--CeEEEecCcEEecCCccc------
Confidence 3345566678899999999999764 346666666654333222111223 2577999999999 8885
Q ss_pred CCCCCCCCCCc
Q psy2807 267 KTDPLTFGRGT 277 (288)
Q Consensus 267 ~~~~~~~~~~~ 277 (288)
+.||--|-||
T Consensus 256 -nnPNVGGFGQ 265 (312)
T PRK02693 256 -NDPNVGGFGQ 265 (312)
T ss_pred -CCCCccccCc
Confidence 4777666665
No 210
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=50.65 E-value=76 Score=29.85 Aligned_cols=23 Identities=13% Similarity=-0.016 Sum_probs=14.6
Q ss_pred eeEEEEcCCCeEEEEEeeCCCCe
Q psy2807 231 TETLIHASADGVHKVRSSNLDYN 253 (288)
Q Consensus 231 me~~I~Ap~~G~V~~i~v~~Gd~ 253 (288)
--|-.+||++|+|.+...-+|+.
T Consensus 142 DYHr~HsPv~G~v~~~~~i~G~~ 164 (288)
T PRK00044 142 DYHRVHMPCDGTLREMIYVPGDL 164 (288)
T ss_pred eeeEEeccCCcEEEEEEEeCCcc
Confidence 34666777777776666666653
No 211
>PRK00723 phosphatidylserine decarboxylase; Provisional
Probab=48.45 E-value=90 Score=29.61 Aligned_cols=27 Identities=7% Similarity=0.009 Sum_probs=21.5
Q ss_pred cceeEEEEcCCCeEEEEEeeCCCCeec
Q psy2807 229 MKTETLIHASADGVHKVRSSNLDYNFM 255 (288)
Q Consensus 229 mKme~~I~Ap~~G~V~~i~v~~Gd~V~ 255 (288)
-+-.|-.+||++|+|.+...-+|+.-+
T Consensus 162 p~DYHR~HsPv~G~v~~~~~i~G~l~~ 188 (297)
T PRK00723 162 PTDYHRFHFPDSGICEETRKIKGHYYS 188 (297)
T ss_pred CCeEEEEEccCCcEEEEEEEECCeEee
Confidence 344688999999999999888887443
No 212
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=47.57 E-value=67 Score=33.49 Aligned_cols=53 Identities=21% Similarity=0.166 Sum_probs=39.1
Q ss_pred ecCCCCEEecCCEEEEEecc-ceeEEEEcCC--CeEEEEEeeCCCCeeccceeEEEe
Q psy2807 210 KAKVGQQVKKNDVLIVMSVM-KTETLIHASA--DGVHKVRSSNLDYNFMRPLQLSLN 263 (288)
Q Consensus 210 ~V~~Gd~V~~G~~l~~lEam-Kme~~I~Ap~--~G~V~~i~v~~Gd~V~~~~L~~i~ 263 (288)
.+++||.|..||.+..+.-- -.+|.|-.|. .|++..| +.+|+.--.+.++++.
T Consensus 123 ~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i-~~~G~ytv~~~i~~~~ 178 (586)
T PRK04192 123 TVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI-VSEGDYTVDDTIAVLE 178 (586)
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE-ccCCCceeeeEEEEEE
Confidence 58999999999999986643 4677777775 5888766 4566654337777776
No 213
>CHL00037 petA cytochrome f
Probab=46.34 E-value=76 Score=30.38 Aligned_cols=75 Identities=11% Similarity=0.043 Sum_probs=49.4
Q ss_pred ccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEE-eccceeEEE-EcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 188 SKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM-SVMKTETLI-HASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 188 ~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~l-EamKme~~I-~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
|....++.....|+..|+|.+|.-++ +|...++| ++-.-+..+ .-|... ++.|++||.|.. ++|.
T Consensus 196 P~G~KSNNnv~~as~~G~I~~I~~~e-----kGg~~vti~~t~~G~~v~~~iP~Gp---~LiVs~G~~v~~~qpLT---- 263 (320)
T CHL00037 196 PDGSKSNNTVYNATAAGIVSKILRKE-----KGGYEITIVDTSDGRQVVDIIPPGP---ELLVSEGESIKLDQPLT---- 263 (320)
T ss_pred CCCcccCCcccccccCcEEEEEEEcC-----CCcEEEEEEecCCCCEEEEeeCCCC---eEEEecCceEecCCccc----
Confidence 33445566778999999999998754 55555555 433322221 223333 567999999999 8886
Q ss_pred CCCCCCCCCCCCc
Q psy2807 265 VRKTDPLTFGRGT 277 (288)
Q Consensus 265 ~~~~~~~~~~~~~ 277 (288)
+.||--|-||
T Consensus 264 ---nnPNVGGFGQ 273 (320)
T CHL00037 264 ---NNPNVGGFGQ 273 (320)
T ss_pred ---CCCCcCccCc
Confidence 4788766666
No 214
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=45.34 E-value=27 Score=33.05 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=22.4
Q ss_pred EEEEEEecCCCCEEecCCEEEEEec
Q psy2807 204 GNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 204 G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
..-..|.+++|+.|++||+|+.++.
T Consensus 63 ~i~~~~~~~DG~~v~~g~~i~~~~G 87 (280)
T COG0157 63 SIEIQWLVKDGDRVKPGDVLAEIEG 87 (280)
T ss_pred ceEEEEEcCCCCEeCCCCEEEEEec
Confidence 3566799999999999999999996
No 215
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=45.10 E-value=31 Score=28.40 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=32.0
Q ss_pred eeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCCCCCCCCCCC
Q psy2807 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVRKTDPLTFGR 275 (288)
Q Consensus 197 ~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~~~~~~~~~~ 275 (288)
...|+..|+|.+|.-++ +|.-.++|++-.-+..+..=-.| -++.|++||.|.. ++|.. .||--|-
T Consensus 4 v~~As~~G~I~~I~~~e-----kgg~~vtI~~~dG~~v~~~IP~G--peLiV~eG~~V~~dqpLT~-------nPNVGGF 69 (118)
T PF01333_consen 4 VYNASAAGTITKITRKE-----KGGYEVTIETSDGETVVETIPAG--PELIVSEGQSVKADQPLTN-------NPNVGGF 69 (118)
T ss_dssp --B-SSSEEEEEEEEET-----TSEEEEEEETTTSEEEEEEEESS--S-BS--TT-EETTT-BSB-------------EE
T ss_pred eEcccCCeEEEEEEEcC-----CCCEEEEEECCCCCEEEEecCCC--CeEEEcCCCEEecCCcccC-------CCCcCcc
Confidence 46788999999997644 56666666654432211110112 1567899999999 88863 5664444
Q ss_pred Cc
Q psy2807 276 GT 277 (288)
Q Consensus 276 ~~ 277 (288)
||
T Consensus 70 GQ 71 (118)
T PF01333_consen 70 GQ 71 (118)
T ss_dssp EE
T ss_pred Cc
Confidence 43
No 216
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=44.60 E-value=28 Score=32.46 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=23.6
Q ss_pred cEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 203 PGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 203 ~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
+|.-+.|.+++|+.|++||+|+.++.
T Consensus 56 ~~l~v~~~~~dG~~v~~g~~i~~i~G 81 (268)
T cd01572 56 PGIEVEWLVKDGDRVEPGQVLATVEG 81 (268)
T ss_pred CCeEEEEEeCCCCEecCCCEEEEEEE
Confidence 46678899999999999999999995
No 217
>KOG0368|consensus
Probab=44.38 E-value=1.1e+02 Score=35.55 Aligned_cols=109 Identities=12% Similarity=0.120 Sum_probs=73.0
Q ss_pred eeeee-cCCceEEEEEeecccccccCCceEEEEEeCCEEEEEEEeccchhhhhhccccCCCCCCCeeecCCcEEEEEEec
Q psy2807 133 FSCEF-KTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKA 211 (288)
Q Consensus 133 ~~v~~-~~Gk~~~v~l~~~~~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v~V 211 (288)
|.|++ -+|..|.+++...+ ..++.+.+||....+.++.-. .+.+.-...|+...+..
T Consensus 604 ~~vdli~e~~kY~lkV~rss-------~~~y~l~mngs~~~v~v~~L~---------------dggLli~~~Gks~t~y~ 661 (2196)
T KOG0368|consen 604 FDVDLIYEGNKYTLKVVRSS-------SGTYVLRMNGSEVTVGVHQLS---------------DGGLLISLDGKSYTIYW 661 (2196)
T ss_pred ceeEEEecCcEEEEEEEecC-------CceEEEEEcCcEEEEEEEEec---------------CCcEEEEECCceEEEEE
Confidence 34443 35888888776544 456788888888877665311 11222223333334333
Q ss_pred C---CCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 212 K---VGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 212 ~---~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
+ .|-.+.-|---+.+|.-.=-+.++||..|...+..|+.|+.|.+ ++.|+++
T Consensus 662 keev~~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiE 717 (2196)
T KOG0368|consen 662 KEEVDGYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIE 717 (2196)
T ss_pred eeccceEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCeeeehe
Confidence 3 24455667777888874444679999999999999999999999 9999887
No 218
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=44.37 E-value=14 Score=35.56 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=17.5
Q ss_pred EecCCCCEEecCCEEEEEec
Q psy2807 209 VKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 209 v~V~~Gd~V~~G~~l~~lEa 228 (288)
+.|++||.|++||.|+.+-.
T Consensus 272 i~Vk~Gq~V~~Gq~Ig~~G~ 291 (319)
T PRK10871 272 MLVREQQEVKAGQKIATMGS 291 (319)
T ss_pred cccCCcCEECCCCeEEeEcC
Confidence 57999999999999998765
No 219
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=43.94 E-value=70 Score=30.81 Aligned_cols=62 Identities=11% Similarity=0.064 Sum_probs=41.1
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
...|.|+..|+|+.+ |+...---.+++|.--.-...+.+.. .++.|++||.|.. |.|+++..
T Consensus 229 G~pV~Aaa~G~Vv~a----g~~~~gyGn~ViI~H~~g~~S~Yahl----~~i~Vk~Gq~V~~Gq~Ig~~G~ 291 (319)
T PRK10871 229 GQAIIATADGRVVYA----GNALRGYGNLIIIKHNDDYLSAYAHN----DTMLVREQQEVKAGQKIATMGS 291 (319)
T ss_pred CCeEEeccCeEEEEE----eeccCCcceEEEEEeCCceEEEeeCC----CccccCCcCEECCCCeEEeEcC
Confidence 357999999999877 32222212344454333345566654 3568999999999 99999874
No 220
>PRK11649 putative peptidase; Provisional
Probab=41.37 E-value=38 Score=33.88 Aligned_cols=59 Identities=8% Similarity=-0.087 Sum_probs=29.9
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEE
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSL 262 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i 262 (288)
...|.|+.+|+|+...-.. ..|-. ++|+--.--..+.+..+ ++.+++|+.|.. +.|+.+
T Consensus 323 GtpV~A~~dG~V~~~~~~~----~~G~~-v~I~Hg~~y~t~Y~hLs----~~~v~~Gq~V~~Gq~IG~v 382 (439)
T PRK11649 323 GTPVLAVGDGEVVVAKRSG----AAGNY-VAIRHGRQYTTRYMHLR----KLLVKPGQKVKRGDRIALS 382 (439)
T ss_pred CCeEEEecCcEEEEEEEEc----CCceE-EEEECCCceEEEecccC----cccCCCcCEECCCCeEEEE
Confidence 3578999999987643211 12222 22221111123334332 245667777777 766665
No 221
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=40.61 E-value=1.1e+02 Score=30.20 Aligned_cols=53 Identities=19% Similarity=0.158 Sum_probs=37.4
Q ss_pred ecCCCCEEecCCEEEEEe-ccceeEEEEcCC--CeEEEEEeeCCCCeeccceeEEEe
Q psy2807 210 KAKVGQQVKKNDVLIVMS-VMKTETLIHASA--DGVHKVRSSNLDYNFMRPLQLSLN 263 (288)
Q Consensus 210 ~V~~Gd~V~~G~~l~~lE-amKme~~I~Ap~--~G~V~~i~v~~Gd~V~~~~L~~i~ 263 (288)
.+++||.|..||.+..+. .--.+|.|-.|. .|+|+.+ ...|+.--.+.+++++
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~-~~~g~~~~~~~~~~~~ 109 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAGDYTVDDVILEVE 109 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE-ecCCCeeEEEEEEEEE
Confidence 479999999999999775 323688887775 7999874 3457643334445544
No 222
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=39.06 E-value=45 Score=30.89 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=41.7
Q ss_pred eeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEE
Q psy2807 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLS 261 (288)
Q Consensus 197 ~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~ 261 (288)
.|.|-+.|.|+ ...+|+.|++||.+...+-- -...+--|.+-.--...+.+|+.|.. +.|+.
T Consensus 195 ~Vga~~Vg~I~--~~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~V~~Ge~ig~ 257 (259)
T PRK03140 195 KVGAMFVNSIE--LTHERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQEVRLGEKIGT 257 (259)
T ss_pred EEeeEEeeEEE--EecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCEEEcChhhcc
Confidence 46677778777 35689999999999988744 34444444432222456788888877 77654
No 223
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=38.76 E-value=93 Score=32.50 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=39.5
Q ss_pred ecCCCCEEecCCEEEEE-eccceeEEEEcCC--CeEEEEEeeCCCCeeccceeEEEe
Q psy2807 210 KAKVGQQVKKNDVLIVM-SVMKTETLIHASA--DGVHKVRSSNLDYNFMRPLQLSLN 263 (288)
Q Consensus 210 ~V~~Gd~V~~G~~l~~l-EamKme~~I~Ap~--~G~V~~i~v~~Gd~V~~~~L~~i~ 263 (288)
.+++||.|..|+.+.++ |.--.+|.|-.|. +|+|+.+ ..+|+.--.+.+++++
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~ytv~~~i~~~~ 178 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGNYTVDDTVLEVE 178 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCCceeeeEEEEEe
Confidence 58999999999999954 4555678887775 5999876 4567754337777775
No 224
>COG3608 Predicted deacylase [General function prediction only]
Probab=38.09 E-value=37 Score=32.86 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=28.0
Q ss_pred EEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 234 LIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 234 ~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
-|+||.+|.| .-+++.||.|.+ +.|+.+-+.
T Consensus 258 ~i~Ap~~G~v-~~~v~lGd~VeaG~~la~i~~~ 289 (331)
T COG3608 258 MIRAPAGGLV-EFLVDLGDKVEAGDVLATIHDP 289 (331)
T ss_pred eeecCCCceE-EEeecCCCcccCCCeEEEEecC
Confidence 4899999988 578999999999 999999875
No 225
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=37.99 E-value=42 Score=31.46 Aligned_cols=32 Identities=9% Similarity=-0.035 Sum_probs=27.9
Q ss_pred eEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 232 ETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 232 e~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
...|+||.+|.+. -.++.|+.|.+ ++|++|-.
T Consensus 231 ~~~v~Ap~~Gi~~-~~~~~G~~V~~Gq~lg~I~d 263 (293)
T cd06255 231 RDWVAAIHGGLFE-PSVPAGDTIPAGQPLGRVVD 263 (293)
T ss_pred eEEEecCCCeEEE-EecCCCCEecCCCEEEEEEC
Confidence 4579999999885 67999999999 99999964
No 226
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=36.68 E-value=53 Score=30.61 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=27.6
Q ss_pred EEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 233 TLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 233 ~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
..|+||.+|.+. ..++.||.|.+ ++|++|-.
T Consensus 220 ~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~d 251 (287)
T cd06251 220 VWVRAPQGGLLR-SLVKLGDKVKKGQLLATITD 251 (287)
T ss_pred eEEecCCCeEEE-EecCCCCEECCCCEEEEEEC
Confidence 679999999986 48999999999 99999953
No 227
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=36.65 E-value=31 Score=34.62 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=17.7
Q ss_pred EecCCCCEEecCCEEEEEec
Q psy2807 209 VKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 209 v~V~~Gd~V~~G~~l~~lEa 228 (288)
++++.||.|++||+|++|=+
T Consensus 380 l~~k~g~~V~~g~~l~~i~~ 399 (434)
T PRK06078 380 LRKKVGDSVKKGESLATIYA 399 (434)
T ss_pred eccCCcCEeCCCCeEEEEeC
Confidence 47899999999999998864
No 228
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=36.05 E-value=47 Score=32.48 Aligned_cols=57 Identities=11% Similarity=0.053 Sum_probs=41.3
Q ss_pred eeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEe-------eCCCCeecc-ceeE
Q psy2807 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRS-------SNLDYNFMR-PLQL 260 (288)
Q Consensus 197 ~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~-------v~~Gd~V~~-~~L~ 260 (288)
=|..-..|+-..+.|.+-... ....+..-..|.|..+|+|.++. |++||.|.+ |+|.
T Consensus 161 WV~i~~~GT~l~I~v~E~~~p-------~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLI 225 (385)
T PF06898_consen 161 WVGIEIKGTRLIIEVVEKVDP-------EEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLI 225 (385)
T ss_pred EEEEEEEeeEEEEEEEEcCCC-------CcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEE
Confidence 367788899888888765543 11123334579999999999987 567888888 8875
No 229
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.79 E-value=41 Score=31.63 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=21.1
Q ss_pred EEEEecCCCCEEecCCEEEEEec
Q psy2807 206 IIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 206 V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
-+.|++++|+.|++|++++.++.
T Consensus 65 ~v~~~~~dG~~v~~g~~i~~~~G 87 (277)
T PRK08072 65 EVELHKKDGDLVKKGEIIATVQG 87 (277)
T ss_pred EEEEEeCCCCEEcCCCEEEEEEE
Confidence 46899999999999999999985
No 230
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=35.49 E-value=28 Score=34.71 Aligned_cols=45 Identities=27% Similarity=0.284 Sum_probs=30.8
Q ss_pred CeeecCCcEEEEEEe--cCCCCEEecCCEEEEEeccceeEEEEcCCCeEEE
Q psy2807 196 GEIGAPMPGNIIEVK--AKVGQQVKKNDVLIVMSVMKTETLIHASADGVHK 244 (288)
Q Consensus 196 ~~i~apm~G~V~~v~--V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~ 244 (288)
+.+.-|..|.|+.-+ -..|..+-+|.+|.. .--++|+||.+|+|.
T Consensus 297 G~l~~PV~G~il~rFG~~~~gg~~wkG~vi~a----~~Ga~V~A~AdG~Vv 343 (420)
T COG4942 297 GQLAWPVTGRILRRFGQADGGGLRWKGMVIGA----SAGATVKAIADGRVV 343 (420)
T ss_pred CCcCCCCCCcHHHHhcccCCCCccccceEEec----CCCCeeeeecCceEE
Confidence 567778888887764 344556666665543 235789999999764
No 231
>PRK06149 hypothetical protein; Provisional
Probab=34.19 E-value=39 Score=37.11 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=28.6
Q ss_pred CCeeecCCcEEEEEEe---------------------cCCCCEEecCCEEEEEec
Q psy2807 195 AGEIGAPMPGNIIEVK---------------------AKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~---------------------V~~Gd~V~~G~~l~~lEa 228 (288)
...|.||++|+|.... +++||.|++||.|+.+-+
T Consensus 442 gt~v~Ap~~G~v~~~~~~~~~l~~~~~f~~l~g~~~~~~~g~~v~~G~~~~~~g~ 496 (972)
T PRK06149 442 GTAVAAPFAGTVVRDGQGHLTLRGDALELHLDGVEPAVEDGAAVRAGDPLGSVAG 496 (972)
T ss_pred CCeEECccCcEEEEecCCceEecCCCcEEEEecccccCCCCCeecCCchheecCC
Confidence 4679999999988751 788999999999998775
No 232
>PRK07217 replication factor A; Reviewed
Probab=33.78 E-value=2.1e+02 Score=27.55 Aligned_cols=31 Identities=10% Similarity=0.053 Sum_probs=23.0
Q ss_pred ecc-ceeEEEecCC---CCCCCCCCCCcccccCCceecC
Q psy2807 254 FMR-PLQLSLNGVR---KTDPLTFGRGTQISSAQFEWCT 288 (288)
Q Consensus 254 V~~-~~L~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~ 288 (288)
+.. -.|..|.+.+ +-||. ++|++-++. ..||
T Consensus 172 vei~G~lVdi~~GsglI~rCP~-~~C~Rvl~~---g~C~ 206 (311)
T PRK07217 172 VEVEGALVDIQSGSGLIKRCPE-EDCTRVLQN---GRCS 206 (311)
T ss_pred ccceeEEEEEeCCCCCeecCCc-cccCccccC---CCCC
Confidence 444 5677888777 88998 999999954 4565
No 233
>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]
Probab=33.68 E-value=1.3e+02 Score=27.73 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=13.9
Q ss_pred eecCCcEEEEEEecCCCCEEecCCE
Q psy2807 198 IGAPMPGNIIEVKAKVGQQVKKNDV 222 (288)
Q Consensus 198 i~apm~G~V~~v~V~~Gd~V~~G~~ 222 (288)
.+||..|+|.++.--+|.....+..
T Consensus 127 ~haP~~G~i~~~~~~~G~~~~v~~~ 151 (239)
T COG0688 127 NHAPVDGTIIEVRYVPGKFFSANLD 151 (239)
T ss_pred EeCCCCCEEEEEEEECCceeccChh
Confidence 4556666666555555555555443
No 234
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=33.32 E-value=67 Score=36.66 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=29.8
Q ss_pred EecCCCCEEecCCEEEEEecc-------ceeEEEEcCCCeEEE
Q psy2807 209 VKAKVGQQVKKNDVLIVMSVM-------KTETLIHASADGVHK 244 (288)
Q Consensus 209 v~V~~Gd~V~~G~~l~~lEam-------Kme~~I~Ap~~G~V~ 244 (288)
++|+.||.|+++|+|+++-+- |-.-.|+|+.+|.|.
T Consensus 405 l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI~ 447 (1331)
T PRK02597 405 LFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEVR 447 (1331)
T ss_pred EEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEEE
Confidence 689999999999999999883 233479999999664
No 235
>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]
Probab=33.29 E-value=29 Score=31.15 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=18.1
Q ss_pred EEecCCCCEEecCCEEEEEe
Q psy2807 208 EVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 208 ~v~V~~Gd~V~~G~~l~~lE 227 (288)
++.|++||.|++||.|..+-
T Consensus 215 ~~~V~~G~~V~~G~~Ig~~G 234 (277)
T COG0739 215 SILVKEGQKVKAGQVIGYVG 234 (277)
T ss_pred hhccCCCCEeccCCEEEEec
Confidence 68899999999999999874
No 236
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=33.04 E-value=1.2e+02 Score=31.72 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=38.1
Q ss_pred ecCCCCEEecCCEEEEE-eccceeEEEEcC--CCeEEEEEeeCCCCeeccceeEEEe
Q psy2807 210 KAKVGQQVKKNDVLIVM-SVMKTETLIHAS--ADGVHKVRSSNLDYNFMRPLQLSLN 263 (288)
Q Consensus 210 ~V~~Gd~V~~G~~l~~l-EamKme~~I~Ap--~~G~V~~i~v~~Gd~V~~~~L~~i~ 263 (288)
.+++||.|..||.+.++ |.--.||.|-.| ..|+|+.| ..+|+.--.+.++.++
T Consensus 120 ~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i-~~~g~~~~~~~v~~~~ 175 (578)
T TIGR01043 120 TVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI-AEEGDYTVEDTIAVVD 175 (578)
T ss_pred ccccCccccCCceEEEEecccceeeeeecCCCCcceEEEe-ccCCCceeeeeEEEEe
Confidence 48999999999999976 555567876555 47999877 4456643336666665
No 237
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=32.94 E-value=47 Score=31.41 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=21.7
Q ss_pred EEEEEecCCCCEEecCCEEEEEec
Q psy2807 205 NIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 205 ~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
.-++|+++.|+.|++|++|+.++.
T Consensus 61 ~~v~~~~~dG~~v~~G~~i~~~~G 84 (284)
T PRK06096 61 LTIDDAVSDGSQANAGQRLISAQG 84 (284)
T ss_pred CEEEEEeCCCCEeCCCCEEEEEEe
Confidence 457899999999999999999985
No 238
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=32.70 E-value=56 Score=31.70 Aligned_cols=29 Identities=10% Similarity=-0.007 Sum_probs=26.0
Q ss_pred EEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 234 LIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 234 ~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
-|+||.+|.+. -.++.||.|.+ ++|++|-
T Consensus 291 ~v~Ap~~Gl~~-~~~~~Gd~V~~G~~lg~I~ 320 (359)
T cd06250 291 MLYAPAGGMVV-YRAAPGDWVEAGDVLAEIL 320 (359)
T ss_pred EEeCCCCeEEE-EecCCCCEecCCCEEEEEE
Confidence 49999999885 67899999999 9999985
No 239
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=32.67 E-value=98 Score=28.75 Aligned_cols=49 Identities=8% Similarity=-0.018 Sum_probs=34.7
Q ss_pred cCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEE
Q psy2807 211 AKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSL 262 (288)
Q Consensus 211 V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i 262 (288)
+.+|+.|++||.+...+- --...+--|. |.+ ++.+++|+.|.. +.|+.|
T Consensus 216 ~~~~~~v~kGee~G~F~f-GSTVvllf~~-~~~-~~~v~~g~~V~~Ge~ig~~ 265 (265)
T PRK03934 216 EYENLKLKKGEELGNFEM-GSTIVLFSQK-GSL-EFNLKAGKSVKFGESIGEI 265 (265)
T ss_pred ccCCceEccccEeeEEcc-CCEEEEEEeC-Ccc-eEccCCCCEEEcchhhccC
Confidence 345999999999998874 3344444444 333 577999999988 877653
No 240
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.45 E-value=49 Score=31.09 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=21.4
Q ss_pred EEEEecCCCCEEecCCEEEEEec
Q psy2807 206 IIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 206 V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
-++|.+++|+.|++|++|+.++.
T Consensus 67 ~~~~~~~dG~~v~~g~~i~~i~G 89 (277)
T PRK05742 67 AVHWQVADGERVSANQVLFHLEG 89 (277)
T ss_pred EEEEEeCCCCEEcCCCEEEEEEE
Confidence 47899999999999999999996
No 241
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=32.18 E-value=55 Score=30.81 Aligned_cols=30 Identities=13% Similarity=0.167 Sum_probs=26.4
Q ss_pred EEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 233 TLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 233 ~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
..|+||.+|.+. -.++.||.|.+ ++|++|-
T Consensus 230 ~~v~A~~~Gl~~-~~~~~G~~V~~Gq~lg~i~ 260 (298)
T cd06253 230 VYVNAETSGIFV-PAKHLGDIVKRGDVIGEIV 260 (298)
T ss_pred EEEEcCCCeEEE-ECcCCCCEECCCCEEEEEe
Confidence 468999999885 56899999999 9999985
No 242
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=31.76 E-value=58 Score=31.20 Aligned_cols=25 Identities=20% Similarity=-0.013 Sum_probs=22.2
Q ss_pred EEEEEEecCCCCEEecCCEEEEEec
Q psy2807 204 GNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 204 G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
+.-++|.++.|+.|++|++|+.++.
T Consensus 77 ~~~v~~~~~dG~~v~~G~~i~~v~G 101 (308)
T PLN02716 77 SLKVEWAAIDGDFVHKGLKFGKVTG 101 (308)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEE
Confidence 3567799999999999999999985
No 243
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.71 E-value=51 Score=31.24 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=21.6
Q ss_pred EEEEEecCCCCEEecCCEEEEEec
Q psy2807 205 NIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 205 ~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
.-++|.+++|+.|++||+|+.++.
T Consensus 76 ~~v~~~~~dG~~v~~g~~i~~i~G 99 (289)
T PRK07896 76 YEVLDRVEDGARVPPGQALLTVTA 99 (289)
T ss_pred eEEEEEcCCCCEecCCCEEEEEEE
Confidence 456799999999999999999985
No 244
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.68 E-value=51 Score=30.90 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.0
Q ss_pred EEEEEEecCCCCEEecCCEEEEEec
Q psy2807 204 GNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 204 G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
|.-+.|.+++|+.|++||+|+.++-
T Consensus 57 ~~~~~~~~~dG~~v~~g~~i~~i~G 81 (273)
T PRK05848 57 GIECVFTIKDGERFKKGDILMEIEG 81 (273)
T ss_pred CCEEEEEcCCCCEecCCCEEEEEEE
Confidence 3457899999999999999999985
No 245
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=31.58 E-value=63 Score=30.11 Aligned_cols=30 Identities=10% Similarity=0.047 Sum_probs=26.3
Q ss_pred EEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 233 TLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 233 ~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
..++||.+|.+. -.++.||.|.+ ++|+++-
T Consensus 224 ~~v~Ap~~G~~~-~~~~~G~~V~~G~~lg~i~ 254 (288)
T cd06254 224 YYVTSPASGLWY-PFVKAGDTVQKGALLGYVT 254 (288)
T ss_pred EEEecCCCeEEE-EecCCCCEecCCCEEEEEE
Confidence 468999999885 66899999999 9999984
No 246
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.56 E-value=52 Score=31.10 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=21.7
Q ss_pred EEEEEecCCCCEEecCCEEEEEec
Q psy2807 205 NIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 205 ~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
.-+.|.++.|+.|++||+|+.++.
T Consensus 65 ~~v~~~~~dG~~v~~G~~i~~~~G 88 (281)
T PRK06543 65 ITVTLAVADGERFEAGDILATVTG 88 (281)
T ss_pred eEEEEEeCCCCEecCCCEEEEEEe
Confidence 467899999999999999999985
No 247
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=30.87 E-value=65 Score=30.50 Aligned_cols=31 Identities=10% Similarity=0.082 Sum_probs=27.0
Q ss_pred EEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 233 TLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 233 ~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
.-|+||.+|.+. -.++.|+.|.+ ++|++|-.
T Consensus 245 ~~v~A~~~G~~~-~~~~~G~~V~~G~~lg~i~d 276 (316)
T cd06252 245 CYVFAPHPGLFE-PLVDLGDEVSAGQVAGRIHF 276 (316)
T ss_pred EEEEcCCCeEEE-EecCCCCEEcCCCEEEEEEC
Confidence 468999999885 67999999999 99999853
No 248
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.73 E-value=55 Score=30.99 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=21.5
Q ss_pred EEEEEecCCCCEEecCCEEEEEec
Q psy2807 205 NIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 205 ~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
.-++|++++|+.|++||+++.++.
T Consensus 72 ~~~~~~~~dG~~v~~g~~i~~~~G 95 (288)
T PRK07428 72 VSFTPLVAEGAACESGQVVAEIEG 95 (288)
T ss_pred EEEEEEcCCCCEecCCCEEEEEEE
Confidence 456799999999999999999985
No 249
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=30.70 E-value=55 Score=30.56 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.7
Q ss_pred EEEEEecCCCCEEecCCEEEEEec
Q psy2807 205 NIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 205 ~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
.-+.|.+++|+.|++||+|+.++.
T Consensus 56 ~~v~~~~~dG~~v~~g~~i~~i~G 79 (272)
T cd01573 56 LEVDLAAASGSRVAAGAVLLEAEG 79 (272)
T ss_pred cEEEEEcCCCCEecCCCEEEEEEE
Confidence 566789999999999999999996
No 250
>PRK06148 hypothetical protein; Provisional
Probab=30.27 E-value=33 Score=37.89 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=11.4
Q ss_pred CCeeecCCcEEEEEE
Q psy2807 195 AGEIGAPMPGNIIEV 209 (288)
Q Consensus 195 ~~~i~apm~G~V~~v 209 (288)
...|.||.+|+|..+
T Consensus 451 gt~v~A~~~G~V~~~ 465 (1013)
T PRK06148 451 GTPVYAPLAGTVRSV 465 (1013)
T ss_pred CCeeecccCceEEEe
Confidence 456888888888765
No 251
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=30.17 E-value=56 Score=31.13 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.6
Q ss_pred EEEEEecCCCCEEecCCEEEEEec
Q psy2807 205 NIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 205 ~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
.-++|++++|+.|++|++|+.++.
T Consensus 85 ~~v~~~~~dG~~v~~G~~i~~i~G 108 (296)
T PRK09016 85 VTIEWHVDDGDVITANQTLFELTG 108 (296)
T ss_pred eEEEEEcCCCCEecCCCEEEEEEE
Confidence 357899999999999999999985
No 252
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=30.04 E-value=67 Score=30.78 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=26.9
Q ss_pred EEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 234 LIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 234 ~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
-++||.+|.+. -.++.||.|.+ ++|++|-.
T Consensus 257 ~v~Ap~~Gi~~-~~v~~G~~V~~G~~lg~I~d 287 (325)
T TIGR02994 257 FIFAEDDGLIE-FMIDLGDPVSKGDVIARVYP 287 (325)
T ss_pred EEEcCCCeEEE-EecCCCCEeCCCCEEEEEEC
Confidence 49999999885 67999999999 99999965
No 253
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=29.85 E-value=81 Score=30.92 Aligned_cols=56 Identities=25% Similarity=0.208 Sum_probs=39.7
Q ss_pred eeecCCcEEEEEEecCCCCEEecCCEEEEEecccee--EEEEcCCCeEEEEEe-------eCCCCeecc-ceeE
Q psy2807 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTE--TLIHASADGVHKVRS-------SNLDYNFMR-PLQL 260 (288)
Q Consensus 197 ~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme--~~I~Ap~~G~V~~i~-------v~~Gd~V~~-~~L~ 260 (288)
=+.+-..|+-..+.|.+...... .-+.+ ..|.|..+|+|.++. |++||.|.+ |+|.
T Consensus 157 WV~v~i~GTrl~i~v~Ek~~~p~--------~~~~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLI 222 (382)
T TIGR02876 157 WAGVRVRGTTLVIKVVEKQEPKP--------VLKKAEPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLI 222 (382)
T ss_pred EEEEEEEeEEEEEEEEecCCCCC--------ccccCCCccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEE
Confidence 47778889888888877653111 11333 379999999999987 457777888 7775
No 254
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=29.00 E-value=68 Score=29.79 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.4
Q ss_pred EEEEEEecCCCCEEecCCEEEEEec
Q psy2807 204 GNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 204 G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
|.-+.|.+++|+.|++|++|+.++.
T Consensus 56 ~~~v~~~~~dG~~v~~g~~i~~i~G 80 (269)
T cd01568 56 GIEVEWLVKDGDRVEAGQVLLEVEG 80 (269)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEE
Confidence 4567799999999999999999996
No 255
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.59 E-value=62 Score=30.80 Aligned_cols=24 Identities=4% Similarity=0.109 Sum_probs=21.6
Q ss_pred EEEEEecCCCCEEecCCEEEEEec
Q psy2807 205 NIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 205 ~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
.-++|.++.|+.|++|++|+.++.
T Consensus 82 ~~v~~~~~dG~~v~~G~~i~~~~G 105 (294)
T PRK06978 82 IEVTWRYREGDRMTADSTVCELEG 105 (294)
T ss_pred eEEEEEcCCCCEeCCCCEEEEEEe
Confidence 457899999999999999999985
No 256
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.59 E-value=63 Score=30.44 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.5
Q ss_pred EEEEEecCCCCEEecCCEEEEEec
Q psy2807 205 NIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 205 ~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
.-+.|++++|+.|++|++|+.++.
T Consensus 58 ~~v~~~~~dG~~v~~g~~i~~i~G 81 (278)
T PRK08385 58 VKVEVRKRDGEEVKAGEVILELKG 81 (278)
T ss_pred CEEEEEcCCCCEecCCCEEEEEEE
Confidence 456789999999999999999985
No 257
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=28.31 E-value=18 Score=29.84 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=10.4
Q ss_pred EecCCCCEEecCCEEE
Q psy2807 209 VKAKVGQQVKKNDVLI 224 (288)
Q Consensus 209 v~V~~Gd~V~~G~~l~ 224 (288)
+.|++||.|++||+|-
T Consensus 46 LiV~eG~~V~~dqpLT 61 (118)
T PF01333_consen 46 LIVSEGQSVKADQPLT 61 (118)
T ss_dssp BS--TT-EETTT-BSB
T ss_pred EEEcCCCEEecCCccc
Confidence 6799999999999974
No 258
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=27.77 E-value=67 Score=29.88 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.7
Q ss_pred EEEEecCCCCEEecCCEEEEEec
Q psy2807 206 IIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 206 V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
-+.|.+++|+.|++|++|+.++.
T Consensus 55 ~v~~~~~dG~~v~~g~~i~~i~G 77 (265)
T TIGR00078 55 QVEWLVKDGDRVEPGEVVAEVEG 77 (265)
T ss_pred EEEEEeCCCCEecCCCEEEEEEE
Confidence 35789999999999999999985
No 259
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=27.49 E-value=58 Score=24.43 Aligned_cols=25 Identities=8% Similarity=0.056 Sum_probs=18.9
Q ss_pred CCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 238 SADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 238 p~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
|..|+ .++++.||.|.. ++|++|=.
T Consensus 30 ~~vGi--~l~~k~Gd~V~~Gd~l~~i~~ 55 (75)
T PF07831_consen 30 PAVGI--ELHKKVGDRVEKGDPLATIYA 55 (75)
T ss_dssp TT-EE--EESS-TTSEEBTTSEEEEEEE
T ss_pred cCcCe--EecCcCcCEECCCCeEEEEEc
Confidence 44565 589999999999 99999853
No 260
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.38 E-value=79 Score=29.87 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=22.3
Q ss_pred EEEEEEecCCCCEEecCCEEEEEec
Q psy2807 204 GNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 204 G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
+.-++|+++.|+.|++|++|+.++.
T Consensus 69 ~~~~~~~~~dG~~v~~g~~i~~i~G 93 (281)
T PRK06106 69 EIEMRRHLPDGAAVAPGDVIATISG 93 (281)
T ss_pred ceEEEEEeCCCCEEcCCCEEEEEEE
Confidence 3567899999999999999999985
No 261
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=26.80 E-value=1.1e+02 Score=31.25 Aligned_cols=35 Identities=14% Similarity=0.055 Sum_probs=27.9
Q ss_pred cceeEEEEcCCCeEEEE------------------------EeeCCCCeecc-ceeEEEe
Q psy2807 229 MKTETLIHASADGVHKV------------------------RSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 229 mKme~~I~Ap~~G~V~~------------------------i~v~~Gd~V~~-~~L~~i~ 263 (288)
-+-.++|+|+.+|.|.. ++++.||.|.. ++|++|-
T Consensus 410 ~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~ 469 (493)
T TIGR02645 410 GIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIY 469 (493)
T ss_pred CCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEE
Confidence 35567788888887765 56889999999 9999985
No 262
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=26.57 E-value=1e+02 Score=37.73 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=40.3
Q ss_pred EEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc
Q psy2807 208 EVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR 256 (288)
Q Consensus 208 ~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~ 256 (288)
.++|++|+.|++||.|+.-..- ..+|-|..+|+|.-..+.+|-++..
T Consensus 2423 ~l~v~~g~~V~~g~~la~wdp~--~~piisE~~G~v~f~d~~~g~t~~~ 2469 (2836)
T PRK14844 2423 KLYVDEGGSVKIGDKVAEWDPY--TLPIITEKTGTVSYQDLKDGISITE 2469 (2836)
T ss_pred EEEecCCCEecCCCEEEEEcCC--CcceEeecceEEEEEEEecceeEEE
Confidence 3789999999999999998764 3579999999999888888888755
No 263
>PRK02866 cyanate hydratase; Validated
Probab=26.26 E-value=1.4e+02 Score=25.63 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=17.5
Q ss_pred HHHhccCchhhhhhcccccccchhHHHHhcc
Q psy2807 42 CLRQLLIKAKDVMENADKIIFPKSVSAFFQG 72 (288)
Q Consensus 42 ~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G 72 (288)
++=+|-++.+..+.-++-+.++++.+..|+.
T Consensus 39 ~lGQ~~ls~e~A~kla~~LgL~~~~~~~l~~ 69 (147)
T PRK02866 39 LLGQMTLPAEEAEKVAELLGLDEDAVALLQE 69 (147)
T ss_pred HhCCCCCCHHHHHHHHHHhCCCHHHHHHHhc
Confidence 3344556666555555556666666665554
No 264
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=26.20 E-value=86 Score=29.01 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=26.1
Q ss_pred ecCCCCEEec-CCEEEEEeccceeEEEEcCCCeEEE
Q psy2807 210 KAKVGQQVKK-NDVLIVMSVMKTETLIHASADGVHK 244 (288)
Q Consensus 210 ~V~~Gd~V~~-G~~l~~lEamKme~~I~Ap~~G~V~ 244 (288)
.++.|+.+.+ |++|+.-. ..+++||.+|.|.
T Consensus 225 ~~~~~~~~~~~G~~la~~~----~~~~~ap~~g~vl 256 (272)
T cd06910 225 PFRGGETIPRAGTVIAHDG----GEPIRTPYDDCVL 256 (272)
T ss_pred CcCCcceeccCCcEEEEeC----CeEEeCCCCCEEE
Confidence 4677999999 99999853 4899999999764
No 265
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=25.92 E-value=36 Score=19.80 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=9.5
Q ss_pred CCcccccCCceecC
Q psy2807 275 RGTQISSAQFEWCT 288 (288)
Q Consensus 275 ~~~~~~~~~~~~~~ 288 (288)
||.+|+ ++-.|||
T Consensus 5 CG~~~~-~~~~fC~ 17 (23)
T PF13240_consen 5 CGAEIE-DDAKFCP 17 (23)
T ss_pred cCCCCC-CcCcchh
Confidence 888886 5667775
No 266
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=25.68 E-value=1e+02 Score=37.72 Aligned_cols=72 Identities=17% Similarity=0.096 Sum_probs=54.6
Q ss_pred CCeeecCCcEEEEE--------EecCCCCEEecCCEEEEEec-----------cce------------eEEEEcCCCeEE
Q psy2807 195 AGEIGAPMPGNIIE--------VKAKVGQQVKKNDVLIVMSV-----------MKT------------ETLIHASADGVH 243 (288)
Q Consensus 195 ~~~i~apm~G~V~~--------v~V~~Gd~V~~G~~l~~lEa-----------mKm------------e~~I~Ap~~G~V 243 (288)
.-.|+||+.+.-.. |...-|..|.-|+.+.+|-| |.. +..|+|+.+|+|
T Consensus 2300 ~v~IRS~ltC~s~~gvC~~CYG~~La~~~~V~iGeaVGiIAAQSIGEPGTQLTMRTFHtGGvas~~~~~~~i~~~~~G~v 2379 (2836)
T PRK14844 2300 VVKIRSPLTCEISPGVCSLCYGRDLATGKIVSIGEAVGVIAAQSVGEPGTQLTMRTFHIGGVMTRGVESSNIIASINAKI 2379 (2836)
T ss_pred EEEEcCCeeECCCCCChhhccCccccCCCcccccccceeeeecccCCCcceeeeeheeeccccccccccceeEeccCceE
Confidence 34688888775533 67889999999999999987 322 235888888876
Q ss_pred E------------------------------------------EEeeCCCCeecc-ceeEEEecCC
Q psy2807 244 K------------------------------------------VRSSNLDYNFMR-PLQLSLNGVR 266 (288)
Q Consensus 244 ~------------------------------------------~i~v~~Gd~V~~-~~L~~i~~~~ 266 (288)
+ .++|+.|+.|.. +.|++.+|-.
T Consensus 2380 ~~~~~~~v~~~~g~~iv~sr~~~~~i~d~~g~~~~~~~i~yga~l~v~~g~~V~~g~~la~wdp~~ 2445 (2836)
T PRK14844 2380 KLNNSNIIIDKNGNKIVISRSCEVVLIDSLGSEKLKHSVPYGAKLYVDEGGSVKIGDKVAEWDPYT 2445 (2836)
T ss_pred EeccceeEEcCCCcEEEEecccEEEEEecCCcEEEEEecccccEEEecCCCEecCCCEEEEEcCCC
Confidence 4 356889999999 9999988643
No 267
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=25.39 E-value=77 Score=29.85 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=21.7
Q ss_pred EEEEEecCCCCEEecCCEEEEEec
Q psy2807 205 NIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 205 ~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
.-+.|+++.|+.|++|+.|+.++.
T Consensus 60 ~~~~~~~~dG~~v~~g~~i~~~~G 83 (277)
T TIGR01334 60 ASIDYAVPSGSRALAGTLLLEAKG 83 (277)
T ss_pred CEEEEEeCCCCEeCCCCEEEEEEe
Confidence 467899999999999999999985
No 268
>PRK01202 glycine cleavage system protein H; Provisional
Probab=25.38 E-value=81 Score=25.99 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=22.4
Q ss_pred CCeeecCCcEEEEEEecC---CCCEEe---cCC-EEEEEe
Q psy2807 195 AGEIGAPMPGNIIEVKAK---VGQQVK---KND-VLIVMS 227 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~---~Gd~V~---~G~-~l~~lE 227 (288)
...|.||++|+|++++.+ ..+.+. .|+ -|+.|+
T Consensus 66 ~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~ 105 (127)
T PRK01202 66 ASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIK 105 (127)
T ss_pred eeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEE
Confidence 357999999999999544 445555 344 555554
No 269
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=25.24 E-value=63 Score=32.37 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=21.5
Q ss_pred CCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 201 PMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 201 pm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
++.| +.++++.|+.|++|++|++|=|
T Consensus 375 ~~aG--i~l~kk~ge~Vk~Gd~l~tiya 400 (435)
T COG0213 375 KGAG--IYLHKKLGEKVKKGDPLATIYA 400 (435)
T ss_pred cccc--eEEEecCCCeeccCCeEEEEec
Confidence 3445 4578999999999999999877
No 270
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=25.21 E-value=81 Score=28.96 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=24.0
Q ss_pred cEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 203 PGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 203 ~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
++....+.+.+|+.|++|++++.+|.
T Consensus 48 ~~~~~~~~~~eG~~v~~g~~vl~i~G 73 (281)
T cd00516 48 PGPLVILAVPEGTVVEPGEPLLTIEG 73 (281)
T ss_pred CCceEEEECCCCCEecCCCEEEEEEE
Confidence 67788899999999999999999996
No 271
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=24.58 E-value=1.1e+02 Score=35.27 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=33.5
Q ss_pred EecCCCCEEecCCEEEEEeccc--------eeEEEEcCCCeEEEEEeeCCC
Q psy2807 209 VKAKVGQQVKKNDVLIVMSVMK--------TETLIHASADGVHKVRSSNLD 251 (288)
Q Consensus 209 v~V~~Gd~V~~G~~l~~lEamK--------me~~I~Ap~~G~V~~i~v~~G 251 (288)
++|+.||.|++||.|++..+-. -..+|.|..+|.|.--....|
T Consensus 406 l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v~~~~~~~~ 456 (1364)
T CHL00117 406 LLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEMHWSTDVYH 456 (1364)
T ss_pred EEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEEEcccccCC
Confidence 5799999999999999998732 236899999998765544443
No 272
>PRK11637 AmiB activator; Provisional
Probab=24.56 E-value=1.1e+02 Score=30.14 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=27.1
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEee
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSS 248 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v 248 (288)
.+.+.-|.+|.|+.=+=..-+.+....-+. |.+-. -.+|+|+.+|+|.....
T Consensus 304 ~g~~~~Pv~g~i~~~fg~~~~~~~~~~Gi~-i~~~~-g~~v~A~~~G~V~~~~~ 355 (428)
T PRK11637 304 RGQAFWPVRGPTLHRFGEQLQGELRWKGMV-IGASE-GTEVKAIADGRVLLADW 355 (428)
T ss_pred CCCCccCCCCCccCCCCCCCCCCCCCCCEE-eecCC-CCeEEecCCeEEEEeec
Confidence 356777888876543211101111112222 22222 35899999999987643
No 273
>PRK04350 thymidine phosphorylase; Provisional
Probab=24.31 E-value=1.3e+02 Score=30.71 Aligned_cols=35 Identities=9% Similarity=0.053 Sum_probs=27.9
Q ss_pred cceeEEEEcCCCeEEEE------------------------EeeCCCCeecc-ceeEEEe
Q psy2807 229 MKTETLIHASADGVHKV------------------------RSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 229 mKme~~I~Ap~~G~V~~------------------------i~v~~Gd~V~~-~~L~~i~ 263 (288)
-+-..+|.||.+|.|.. ++++.||.|.. ++|++|-
T Consensus 402 a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~ 461 (490)
T PRK04350 402 GDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIH 461 (490)
T ss_pred CCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEe
Confidence 45567788888887765 56789999999 9999985
No 274
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=23.06 E-value=5.8e+02 Score=24.93 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=7.4
Q ss_pred EEEEecCCCCEE
Q psy2807 206 IIEVKAKVGQQV 217 (288)
Q Consensus 206 V~~v~V~~Gd~V 217 (288)
|.-..+++||+|
T Consensus 311 vsVt~Lk~GD~V 322 (344)
T PRK02290 311 VSVVDLKPGDEV 322 (344)
T ss_pred eeeeecCCCCEE
Confidence 444567777765
No 275
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=21.97 E-value=44 Score=24.24 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=13.9
Q ss_pred CCCCCCCCCCcccccCCceec
Q psy2807 267 KTDPLTFGRGTQISSAQFEWC 287 (288)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~ 287 (288)
+.||+ ||.||+++ -.||
T Consensus 4 kHC~~---CG~~Ip~~-~~fC 20 (59)
T PF09889_consen 4 KHCPV---CGKPIPPD-ESFC 20 (59)
T ss_pred CcCCc---CCCcCCcc-hhhh
Confidence 67888 99999987 4566
No 276
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=21.55 E-value=1.6e+02 Score=30.29 Aligned_cols=35 Identities=11% Similarity=0.016 Sum_probs=27.5
Q ss_pred cceeEEEEcCCCeEEEE------------------------EeeCCCCeecc-ceeEEEe
Q psy2807 229 MKTETLIHASADGVHKV------------------------RSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 229 mKme~~I~Ap~~G~V~~------------------------i~v~~Gd~V~~-~~L~~i~ 263 (288)
-+-..+|+||.+|.|.. ++++.||.|.. ++|++|-
T Consensus 411 a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~ 470 (500)
T TIGR03327 411 GDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIY 470 (500)
T ss_pred CCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEE
Confidence 34466778888877765 46789999999 9999985
No 277
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=20.52 E-value=2.2e+02 Score=29.59 Aligned_cols=52 Identities=12% Similarity=0.006 Sum_probs=32.2
Q ss_pred cCCCCEEecCCEEEEEe-ccceeEE-EEcCCCeEEEEEeeCCCCeeccceeEEE
Q psy2807 211 AKVGQQVKKNDVLIVMS-VMKTETL-IHASADGVHKVRSSNLDYNFMRPLQLSL 262 (288)
Q Consensus 211 V~~Gd~V~~G~~l~~lE-amKme~~-I~Ap~~G~V~~i~v~~Gd~V~~~~L~~i 262 (288)
+++||.|..||.|.++. .--+.+- +..+.+|.+..+....|+.--.+.++++
T Consensus 122 ~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~ytv~d~ia~v 175 (588)
T COG1155 122 VKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGEYTVEDVIATV 175 (588)
T ss_pred cccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCCceeeEEEEEE
Confidence 58999999999999765 3324222 2333345555566667776433556655
No 278
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.37 E-value=1.3e+02 Score=28.59 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=20.6
Q ss_pred EEEEEec--CCCCEEecCCEEEEEec
Q psy2807 205 NIIEVKA--KVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 205 ~V~~v~V--~~Gd~V~~G~~l~~lEa 228 (288)
....|++ +.|+.|++|++|+.++.
T Consensus 71 ~~~~~~~~~~dG~~v~~G~~i~~v~G 96 (290)
T PRK06559 71 VTFQNPHQFKDGDRLTSGDLVLEIIG 96 (290)
T ss_pred EEEEEeecCCCCCEecCCCEEEEEEE
Confidence 3556777 99999999999999985
Done!