Query psy2807
Match_columns 288
No_of_seqs 320 out of 2272
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 17:26:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hbl_A Pyruvate carboxylase; T 100.0 2.7E-53 9.1E-58 454.1 21.8 243 21-264 867-1147(1150)
2 3bg3_A Pyruvate carboxylase, m 100.0 1.2E-49 4.1E-54 407.8 14.0 241 22-263 440-718 (718)
3 2qf7_A Pyruvate carboxylase pr 100.0 1E-48 3.5E-53 419.3 17.8 242 21-263 884-1164(1165)
4 1rqb_A Transcarboxylase 5S sub 99.8 1.7E-22 5.8E-27 201.2 0.5 149 21-190 351-528 (539)
5 2nx9_A Oxaloacetate decarboxyl 99.8 2.6E-22 9E-27 197.0 -1.8 95 21-128 333-455 (464)
6 3n6r_A Propionyl-COA carboxyla 99.8 3.1E-20 1.1E-24 189.9 12.0 235 15-263 386-681 (681)
7 3u9t_A MCC alpha, methylcroton 99.8 5.3E-20 1.8E-24 188.0 -0.3 236 15-265 393-673 (675)
8 2kcc_A Acetyl-COA carboxylase 99.7 2.2E-16 7.4E-21 120.5 8.6 72 194-266 4-76 (84)
9 2dn8_A Acetyl-COA carboxylase 99.6 1.1E-15 3.9E-20 120.0 10.8 70 194-264 16-86 (100)
10 1z6h_A Biotin/lipoyl attachmen 99.6 1.3E-15 4.5E-20 111.7 10.2 69 197-265 1-70 (72)
11 1bdo_A Acetyl-COA carboxylase; 99.6 1.2E-15 4.1E-20 114.6 9.0 69 195-263 4-80 (80)
12 3crk_C Dihydrolipoyllysine-res 99.6 3.5E-15 1.2E-19 114.3 10.0 65 201-265 17-83 (87)
13 1dcz_A Transcarboxylase 1.3S s 99.6 7.5E-15 2.6E-19 109.1 10.7 72 192-263 5-77 (77)
14 1ghj_A E2, E2, the dihydrolipo 99.6 2.8E-15 9.6E-20 112.4 8.0 65 200-264 12-77 (79)
15 2d5d_A Methylmalonyl-COA decar 99.6 1.2E-14 4E-19 106.8 10.6 69 195-263 5-74 (74)
16 1k8m_A E2 component of branche 99.6 4.2E-15 1.4E-19 115.6 8.4 67 201-267 16-83 (93)
17 2dnc_A Pyruvate dehydrogenase 99.6 8.3E-15 2.8E-19 115.1 8.9 65 202-266 20-86 (98)
18 2ejm_A Methylcrotonoyl-COA car 99.6 2.4E-14 8.1E-19 112.4 10.8 78 193-270 12-90 (99)
19 2l5t_A Lipoamide acyltransfera 99.6 5.9E-15 2E-19 110.0 6.8 64 200-263 12-76 (77)
20 2dne_A Dihydrolipoyllysine-res 99.5 1.4E-14 4.6E-19 115.9 8.2 63 202-264 20-84 (108)
21 1gjx_A Pyruvate dehydrogenase; 99.5 3.8E-15 1.3E-19 112.1 3.6 69 198-266 10-79 (81)
22 1y8o_B Dihydrolipoyllysine-res 99.5 2.9E-14 9.8E-19 117.5 9.1 65 202-266 40-106 (128)
23 2jku_A Propionyl-COA carboxyla 99.5 3.2E-15 1.1E-19 116.4 2.6 71 193-263 23-94 (94)
24 1qjo_A Dihydrolipoamide acetyl 99.5 3.9E-14 1.3E-18 106.2 8.5 63 203-265 14-77 (80)
25 2k7v_A Dihydrolipoyllysine-res 99.5 2.6E-15 9E-20 114.4 1.5 74 197-270 4-78 (85)
26 3va7_A KLLA0E08119P; carboxyla 99.5 5E-14 1.7E-18 152.0 10.7 68 195-262 1167-1235(1236)
27 1iyu_A E2P, dihydrolipoamide a 99.5 7.5E-14 2.6E-18 104.6 7.9 63 203-266 13-76 (79)
28 1pmr_A Dihydrolipoyl succinylt 99.4 3.6E-15 1.2E-19 112.3 -2.9 64 201-264 14-78 (80)
29 1zko_A Glycine cleavage system 99.2 8.2E-12 2.8E-16 103.8 5.1 69 198-266 39-116 (136)
30 2k32_A A; NMR {Campylobacter j 99.1 7.2E-11 2.5E-15 94.2 7.1 69 197-265 3-102 (116)
31 3dva_I Dihydrolipoyllysine-res 99.1 4.8E-12 1.6E-16 123.1 0.0 62 203-264 16-78 (428)
32 1zy8_K Pyruvate dehydrogenase 99.1 7.8E-12 2.7E-16 112.3 0.0 61 203-263 17-79 (229)
33 1hpc_A H protein of the glycin 98.9 6E-10 2.1E-14 92.0 2.5 69 198-266 30-107 (131)
34 3a7l_A H-protein, glycine clea 98.8 4.3E-09 1.5E-13 86.5 4.2 69 198-266 31-108 (128)
35 1onl_A Glycine cleavage system 98.7 3.4E-09 1.2E-13 87.1 2.6 68 199-266 31-107 (128)
36 3fpp_A Macrolide-specific effl 98.5 2.2E-07 7.5E-12 86.0 7.6 69 195-263 31-188 (341)
37 3ne5_B Cation efflux system pr 98.5 3.4E-07 1.2E-11 87.9 9.1 69 195-263 121-239 (413)
38 3lnn_A Membrane fusion protein 98.5 3.9E-07 1.3E-11 84.9 8.7 71 193-263 55-203 (359)
39 2f1m_A Acriflavine resistance 98.4 9.7E-08 3.3E-12 86.0 3.8 69 195-263 22-164 (277)
40 3klr_A Glycine cleavage system 98.3 7.1E-07 2.4E-11 73.0 6.1 65 202-266 30-103 (125)
41 1vf7_A Multidrug resistance pr 98.2 7E-07 2.4E-11 84.2 4.8 70 195-264 43-172 (369)
42 3tzu_A GCVH, glycine cleavage 98.1 2.9E-06 9.8E-11 70.4 5.3 48 202-249 47-95 (137)
43 3mxu_A Glycine cleavage system 98.1 3.8E-06 1.3E-10 70.1 6.1 50 204-253 54-104 (143)
44 4dk0_A Putative MACA; alpha-ha 98.0 3.3E-07 1.1E-11 85.6 -3.2 35 194-228 31-65 (369)
45 1ax3_A Iiaglc, glucose permeas 97.7 2.7E-05 9.3E-10 66.2 5.0 67 193-263 10-116 (162)
46 3hgb_A Glycine cleavage system 97.7 4.5E-05 1.5E-09 64.4 6.1 46 204-249 59-105 (155)
47 3cdx_A Succinylglutamatedesucc 97.7 0.00017 5.9E-09 67.9 10.2 73 196-271 268-346 (354)
48 1f3z_A EIIA-GLC, glucose-speci 97.7 4.1E-05 1.4E-09 65.1 5.2 64 196-263 13-116 (161)
49 2gpr_A Glucose-permease IIA co 97.6 4.4E-05 1.5E-09 64.4 4.9 64 196-263 8-111 (154)
50 3na6_A Succinylglutamate desuc 97.4 0.00058 2E-08 63.8 10.2 69 194-265 256-329 (331)
51 3fmc_A Putative succinylglutam 97.1 0.0016 5.5E-08 61.8 8.8 65 196-263 291-362 (368)
52 1bdo_A Acetyl-COA carboxylase; 97.0 0.00074 2.5E-08 49.6 4.9 32 196-227 49-80 (80)
53 2l5t_A Lipoamide acyltransfera 96.9 0.00094 3.2E-08 48.7 4.8 33 195-227 44-76 (77)
54 2dn8_A Acetyl-COA carboxylase 96.9 0.00032 1.1E-08 54.3 2.1 45 220-264 5-50 (100)
55 1z6h_A Biotin/lipoyl attachmen 96.9 0.0011 3.6E-08 47.5 4.7 34 195-228 36-69 (72)
56 1qjo_A Dihydrolipoamide acetyl 96.8 0.00085 2.9E-08 49.2 3.7 34 195-228 43-76 (80)
57 1iyu_A E2P, dihydrolipoamide a 96.8 0.0016 5.6E-08 47.7 4.9 34 195-228 41-74 (79)
58 1ghj_A E2, E2, the dihydrolipo 96.7 0.0021 7.1E-08 47.1 4.9 34 195-228 44-77 (79)
59 2d5d_A Methylmalonyl-COA decar 96.6 0.0025 8.6E-08 45.5 4.9 32 196-227 43-74 (74)
60 1dcz_A Transcarboxylase 1.3S s 96.5 0.002 7E-08 46.6 3.9 33 195-227 45-77 (77)
61 1k8m_A E2 component of branche 96.3 0.0044 1.5E-07 47.3 4.7 34 195-228 47-80 (93)
62 2k7v_A Dihydrolipoyllysine-res 96.3 0.0018 6E-08 48.4 2.4 35 195-229 39-73 (85)
63 3crk_C Dihydrolipoyllysine-res 96.3 0.0051 1.8E-07 46.1 4.8 34 195-228 48-82 (87)
64 2qj8_A MLR6093 protein; struct 96.1 0.018 6.3E-07 53.3 8.7 64 197-263 259-327 (332)
65 3hbl_A Pyruvate carboxylase; T 95.9 0.013 4.6E-07 63.0 7.8 95 132-228 1043-1147(1150)
66 2kcc_A Acetyl-COA carboxylase 95.6 0.0046 1.6E-07 46.1 2.1 31 234-264 7-38 (84)
67 2dnc_A Pyruvate dehydrogenase 95.6 0.0092 3.2E-07 46.0 3.9 35 195-229 50-85 (98)
68 2jku_A Propionyl-COA carboxyla 95.5 0.0022 7.6E-08 49.0 0.0 33 195-227 62-94 (94)
69 2dne_A Dihydrolipoyllysine-res 95.5 0.012 4.2E-07 46.2 4.3 34 195-228 50-84 (108)
70 1pmr_A Dihydrolipoyl succinylt 95.4 0.0027 9.4E-08 46.7 0.2 34 195-228 45-78 (80)
71 2k32_A A; NMR {Campylobacter j 95.4 0.015 5E-07 45.5 4.5 33 233-265 2-35 (116)
72 1y8o_B Dihydrolipoyllysine-res 95.3 0.018 6.1E-07 46.8 4.8 34 195-228 70-104 (128)
73 1f3z_A EIIA-GLC, glucose-speci 95.2 0.022 7.5E-07 48.1 5.1 33 196-228 50-117 (161)
74 1gjx_A Pyruvate dehydrogenase; 95.2 0.0031 1.1E-07 46.3 -0.2 34 195-228 44-77 (81)
75 2ejm_A Methylcrotonoyl-COA car 95.2 0.013 4.6E-07 44.9 3.4 35 195-229 51-85 (99)
76 2gpr_A Glucose-permease IIA co 94.9 0.026 9E-07 47.3 4.7 20 209-228 93-112 (154)
77 3d4r_A Domain of unknown funct 94.9 0.053 1.8E-06 45.9 6.5 55 197-251 102-157 (169)
78 3n6r_A Propionyl-COA carboxyla 94.7 0.068 2.3E-06 54.4 8.0 32 196-227 650-681 (681)
79 1ax3_A Iiaglc, glucose permeas 94.6 0.022 7.5E-07 48.2 3.6 18 210-227 99-116 (162)
80 2qf7_A Pyruvate carboxylase pr 94.2 0.043 1.5E-06 59.2 5.4 95 132-227 1060-1164(1165)
81 2f1m_A Acriflavine resistance 94.0 0.071 2.4E-06 47.3 5.7 46 219-265 10-56 (277)
82 3fpp_A Macrolide-specific effl 93.8 0.048 1.7E-06 49.8 4.4 56 209-265 9-65 (341)
83 3bg3_A Pyruvate carboxylase, m 93.2 0.035 1.2E-06 57.0 2.7 95 132-227 615-718 (718)
84 3u9t_A MCC alpha, methylcroton 92.5 0.12 4E-06 52.7 5.2 34 195-228 639-672 (675)
85 3our_B EIIA, phosphotransferas 92.1 0.19 6.3E-06 43.3 5.3 19 245-263 119-138 (183)
86 3our_B EIIA, phosphotransferas 92.0 0.2 6.7E-06 43.1 5.3 27 202-228 113-139 (183)
87 3lnn_A Membrane fusion protein 91.9 0.11 3.7E-06 47.8 3.8 56 210-265 34-91 (359)
88 2xha_A NUSG, transcription ant 91.4 0.27 9.3E-06 42.6 5.5 31 209-245 23-53 (193)
89 1vf7_A Multidrug resistance pr 90.2 0.16 5.5E-06 47.3 3.2 56 209-265 21-77 (369)
90 3ne5_B Cation efflux system pr 89.2 0.4 1.4E-05 45.5 5.2 56 209-264 97-155 (413)
91 3va7_A KLLA0E08119P; carboxyla 88.6 0.37 1.3E-05 52.4 5.0 31 196-226 1205-1235(1236)
92 2xhc_A Transcription antitermi 87.9 0.7 2.4E-05 43.5 5.8 32 208-245 62-93 (352)
93 2auk_A DNA-directed RNA polyme 87.4 0.72 2.5E-05 39.6 5.2 46 209-256 64-109 (190)
94 3dva_I Dihydrolipoyllysine-res 87.2 0.12 3.9E-06 50.0 0.0 35 195-229 45-79 (428)
95 4dk0_A Putative MACA; alpha-ha 87.2 0.079 2.7E-06 48.8 -1.1 55 210-265 11-66 (369)
96 2xha_A NUSG, transcription ant 87.0 0.11 3.6E-06 45.2 -0.3 45 210-260 84-157 (193)
97 1zy8_K Pyruvate dehydrogenase 85.8 0.15 5.1E-06 45.2 0.0 34 195-228 46-80 (229)
98 2bco_A Succinylglutamate desuc 83.4 0.62 2.1E-05 43.5 3.0 59 197-262 265-326 (350)
99 3it5_A Protease LASA; metallop 81.5 1.9 6.4E-05 36.7 5.1 14 196-209 49-62 (182)
100 1zko_A Glycine cleavage system 77.6 0.96 3.3E-05 36.9 1.9 34 195-228 74-114 (136)
101 2ztj_A Homocitrate synthase; ( 73.9 0.86 3E-05 43.0 0.8 33 19-54 307-339 (382)
102 3tuf_B Stage II sporulation pr 72.1 3.6 0.00012 36.7 4.4 21 208-228 134-154 (245)
103 3nyy_A Putative glycyl-glycine 70.6 4.8 0.00016 35.9 4.9 17 247-263 183-200 (252)
104 2hsi_A Putative peptidase M23; 69.2 5.9 0.0002 35.9 5.2 59 196-263 191-250 (282)
105 2gu1_A Zinc peptidase; alpha/b 65.0 7.6 0.00026 36.1 5.2 16 195-210 242-257 (361)
106 1uou_A Thymidine phosphorylase 61.9 8.3 0.00028 37.6 5.0 23 207-229 413-435 (474)
107 1brw_A PYNP, protein (pyrimidi 60.6 9 0.00031 36.9 4.9 20 209-228 380-399 (433)
108 3h5q_A PYNP, pyrimidine-nucleo 60.3 9 0.00031 36.9 4.9 18 210-227 384-401 (436)
109 2dsj_A Pyrimidine-nucleoside ( 60.1 9.2 0.00031 36.7 4.9 20 209-228 372-391 (423)
110 2tpt_A Thymidine phosphorylase 51.4 9 0.00031 37.0 3.2 21 209-229 385-405 (440)
111 1qwy_A Peptidoglycan hydrolase 46.2 10 0.00036 34.6 2.6 18 209-226 239-256 (291)
112 2xhc_A Transcription antitermi 45.1 4.3 0.00015 38.1 -0.1 29 210-244 124-152 (352)
113 1qpo_A Quinolinate acid phosph 42.9 20 0.00069 32.4 4.0 25 204-228 70-94 (284)
114 3fmc_A Putative succinylglutam 40.9 21 0.00071 33.3 3.9 31 233-264 291-322 (368)
115 1ci3_M Protein (cytochrome F); 39.3 54 0.0019 28.9 6.0 75 188-277 162-238 (249)
116 1x1o_A Nicotinate-nucleotide p 38.9 21 0.00072 32.3 3.5 23 206-228 73-95 (286)
117 3tqv_A Nicotinate-nucleotide p 38.3 22 0.00075 32.3 3.5 23 206-228 76-98 (287)
118 2b7n_A Probable nicotinate-nuc 38.3 24 0.0008 31.6 3.7 22 207-228 60-81 (273)
119 1o4u_A Type II quinolic acid p 37.9 20 0.00069 32.4 3.2 23 206-228 72-94 (285)
120 3csq_A Morphogenesis protein 1 37.8 10 0.00035 34.9 1.2 21 208-228 250-270 (334)
121 3vr4_A V-type sodium ATPase ca 37.6 82 0.0028 31.5 7.7 52 210-263 130-184 (600)
122 3na6_A Succinylglutamate desuc 37.3 28 0.00095 31.8 4.1 31 233-264 258-289 (331)
123 3lu0_D DNA-directed RNA polyme 36.8 27 0.00092 38.3 4.3 47 208-256 1002-1048(1407)
124 3paj_A Nicotinate-nucleotide p 36.8 22 0.00077 32.8 3.3 25 204-228 107-131 (320)
125 3gnn_A Nicotinate-nucleotide p 36.2 24 0.00084 32.2 3.4 23 206-228 87-109 (298)
126 3l0g_A Nicotinate-nucleotide p 36.0 27 0.00092 32.0 3.7 24 205-228 84-107 (300)
127 2lmc_B DNA-directed RNA polyme 35.9 5.6 0.00019 29.7 -0.7 16 209-224 67-82 (84)
128 1qwy_A Peptidoglycan hydrolase 35.7 77 0.0026 28.8 6.7 60 195-263 195-257 (291)
129 1q90_A Apocytochrome F; membra 33.9 92 0.0032 28.1 6.6 77 188-277 161-239 (292)
130 1e2w_A Cytochrome F; electron 33.6 90 0.0031 27.6 6.4 77 188-277 161-239 (251)
131 1qap_A Quinolinic acid phospho 33.3 24 0.00083 32.0 2.9 25 204-228 84-108 (296)
132 1hcz_A Cytochrome F; electron 31.7 66 0.0023 28.4 5.3 75 188-277 161-238 (252)
133 1uou_A Thymidine phosphorylase 31.0 55 0.0019 31.8 5.2 24 239-264 410-434 (474)
134 2jbm_A Nicotinate-nucleotide p 31.0 28 0.00095 31.6 2.9 22 207-228 73-94 (299)
135 2jxm_B Cytochrome F; copper, e 29.8 73 0.0025 28.1 5.2 74 188-277 163-238 (249)
136 2auk_A DNA-directed RNA polyme 29.2 31 0.0011 29.2 2.8 19 209-227 168-186 (190)
137 2dsj_A Pyrimidine-nucleoside ( 28.4 60 0.0021 31.0 4.9 24 238-263 366-390 (423)
138 3a7l_A H-protein, glycine clea 26.7 30 0.001 27.5 2.0 33 195-227 66-105 (128)
139 3slu_A M23 peptidase domain pr 25.3 44 0.0015 31.3 3.2 59 195-263 256-315 (371)
140 1yw4_A Succinylglutamate desuc 25.3 11 0.00037 34.8 -1.0 45 200-244 268-317 (341)
141 1brw_A PYNP, protein (pyrimidi 24.4 82 0.0028 30.1 5.0 52 197-264 337-399 (433)
142 3cdx_A Succinylglutamatedesucc 21.7 77 0.0026 29.0 4.1 31 233-264 268-299 (354)
143 2hsi_A Putative peptidase M23; 21.1 73 0.0025 28.6 3.7 18 230-247 188-205 (282)
No 1
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=100.00 E-value=2.7e-53 Score=454.11 Aligned_cols=243 Identities=30% Similarity=0.463 Sum_probs=221.1
Q ss_pred CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807 21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH---- 96 (288)
Q Consensus 21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i---- 96 (288)
.++|||||||||||||||||+|||+|+|+++++.++++.++||+|+++||+|+||+||+|||++|++++|+|++++
T Consensus 867 ~~~g~~~~vtp~sq~vg~~a~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~G~~g~~~~~~~~~~~~~~~~~~~~~~~rp 946 (1150)
T 3hbl_A 867 FLFGDIVKVAPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARP 946 (1150)
T ss_dssp HHTTSCCCCTTHHHHHHHHHHHHHHTTCCTTHHHHSGGGCCCCHHHHHHTTTSSCCCTTCCCHHHHHHHHTTCCCCSSCG
T ss_pred HHcCCCceECchhHHHHHHHHHHHHcCCChhhhhcccccccCCHHHHHHhCcCCCCCCCCCCHHHHHHHhcCCCCccCCc
Confidence 3689999999999999999999999999999999888889999999999999999999999999999999998776
Q ss_pred ---c--------ccc--------CCcccceeec--------------ccCCCCCCCcccccCCCCCCceeeeeecCCceE
Q psy2807 97 ---T--------LDR--------KPECDLMMED--------------EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTA 143 (288)
Q Consensus 97 ---L--------~~~--------~~deDvL~~a--------------~fg~~~~l~t~~F~~g~~~gee~~v~~~~Gk~~ 143 (288)
| +++ .++||+|.|+ .||+++.|||+.||+|++.||++++++++||++
T Consensus 947 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 1026 (1150)
T 3hbl_A 947 GEYLEPVDFEKVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNGETVEIEIDKGKRL 1026 (1150)
T ss_dssp GGGSCCCCHHHHHHHHHHHSCSCCCHHHHHHHHHSHHHHHHHHHHHHHHCCGGGSCHHHHHHCCCTTCEEEEEEETTEEE
T ss_pred cccCChhhHHHHHHHHHHhhCCCCCHHHHHHHHcCCHHHHHHHHHHHhcCCcccCCchhhhcCCCCCceEEEEccCCcEE
Confidence 1 111 4789999544 478999999999999999999999999999999
Q ss_pred EEEEeecccccccCCceEEEEEeCCEEEEEEEeccchhhhhhccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEE
Q psy2807 144 YVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVL 223 (288)
Q Consensus 144 ~v~l~~~~~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l 223 (288)
.|++.+++ .+++.|.++++|++||+.+++.|.+..........+++++.+..+|.|||+|+|++|+|++||.|++||+|
T Consensus 1027 ~i~l~~~~-~~~~~g~~~~~~e~nG~~~~v~v~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l 1105 (1150)
T 3hbl_A 1027 IIKLETIS-EPDENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPL 1105 (1150)
T ss_dssp EEEEEEEC-CCCTTSEEEEEEEETTEEEEEEEECCCSSSCCCCCCBCCTTCSSEEECSSSEEEEEECCCTTCEECTTCEE
T ss_pred EEEecccC-CCCCCCceEEEEEECCeEEEEecccccccccccccccCCCCCCceeecCceEEEEEEEeCCCCEECCCCEE
Confidence 99999998 78888999999999999999999987643333344667777889999999999999999999999999999
Q ss_pred EEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 224 IVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 224 ~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
++|||||||++|+||.+|+|.++++++||.|.. ++|++|++
T Consensus 1106 ~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A 1106 LITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEK 1147 (1150)
T ss_dssp EEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC-
T ss_pred EEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEec
Confidence 999999999999999999999999999999999 99999975
No 2
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=100.00 E-value=1.2e-49 Score=407.82 Aligned_cols=241 Identities=36% Similarity=0.591 Sum_probs=214.1
Q ss_pred CCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc-----
Q psy2807 22 TSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH----- 96 (288)
Q Consensus 22 ~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i----- 96 (288)
++||+++|||+||+|||||+|||+|.|+.+++.++.+.++||+|+++||+|+||+||+|||++|++++|+|++++
T Consensus 440 ~lG~~~~Vtp~Sq~vg~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~~p~~~~~~~~~~~l~~~~~~~~rp~ 519 (718)
T 3bg3_A 440 MLGDLIKVTPSSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLPRVEGRPG 519 (718)
T ss_dssp HTTSCCCCTTHHHHHHHHHHHHHHTTCCHHHHHHHTTTCCCCHHHHHHTTTSSCCCSSCCCHHHHHHHHSSSCCCCSCHH
T ss_pred HcCCCccCCcHhHHHHHHHHHHHHcCCChHHhccccccccCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCCCCcc
Confidence 699999999999999999999999999999999888889999999999999999999999999999999998877
Q ss_pred --cc--------cc--------CCcccceeec--------------ccCCCCCCCcccccCCCCCCceeeeeecCCceEE
Q psy2807 97 --TL--------DR--------KPECDLMMED--------------EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAY 144 (288)
Q Consensus 97 --L~--------~~--------~~deDvL~~a--------------~fg~~~~l~t~~F~~g~~~gee~~v~~~~Gk~~~ 144 (288)
|. ++ .++||+|.|+ .||+++.|||+.||+|++.++++.+++++||+|.
T Consensus 520 ~~l~~~d~~~~~~~~~~~~~~~~~~ed~l~~~~~p~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~v~i~~Gk~~~ 599 (718)
T 3bg3_A 520 ASLPPLDLQALEKELVDRHGEEVTPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGKTLH 599 (718)
T ss_dssp HHSCCCCSSHHHHHHHHHTCSCCCHHHHHHHHHCHHHHHHHHHHHHHSCCCTTSCHHHHHHCCCBTCEEEEECTTSCEEE
T ss_pred ccCCcccHHHHHHHHHHHhccCCCHHHHHHHHhCchhHHHHHHHHHhcCCcccCcchhhhcCCCcCceeeeecccCceeE
Confidence 11 11 4779999555 4789999999999999999999999999999999
Q ss_pred EEEeecccccccCCceEEEEEeCCEEEEEEEeccchhhhhhccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEE
Q psy2807 145 VTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLI 224 (288)
Q Consensus 145 v~l~~~~~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~ 224 (288)
+++.+++ +++..+.+++++++||+++++.+.+.........++++++.+...|.|||+|+|++|.|++||.|++||+|+
T Consensus 600 i~l~~i~-~~~~~g~~~~~vevnG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~ 678 (718)
T 3bg3_A 600 IKALAVS-DLNRAGQRQVFFELNGQLRSILVKDTQAMKEMHFHPKALKDVKGQIGAPMPGKVIDIKVVAGAKVAKGQPLC 678 (718)
T ss_dssp EEEEEEE-EECTTSEEEEEEESSSSEEEEEEECGGGTCC-----CCCCCSSSCEECSSCEEEEEECSCTTCCBCTTCCCE
T ss_pred EEecccC-CcccCCcEEEEEEECCEEEEEEEeccCccccccccccCCCCCCceEeCCCCeEEEEEEeCCCCeeCCCCEEE
Confidence 9999888 677788899999999999999998764321112234555666789999999999999999999999999999
Q ss_pred EEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 225 VMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 225 ~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
+|||||||++|+||.+|+|.++++++|+.|.. ++|++|+
T Consensus 679 ~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 679 VLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp EEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred EEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 99999999999999999999999999999999 9998763
No 3
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=100.00 E-value=1e-48 Score=419.26 Aligned_cols=242 Identities=29% Similarity=0.422 Sum_probs=211.2
Q ss_pred CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807 21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH---- 96 (288)
Q Consensus 21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i---- 96 (288)
..+||++|||||||||||||+|||+|.|+.+++.++.+.++||+|+++|++|+||+||+|||++|++++|++++++
T Consensus 884 ~~~G~~~~vtp~Sq~vg~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~l~~~~~~~~rp 963 (1165)
T 2qf7_A 884 QMFGDIVKVTPSSKVVGDMALMMVSQDLTVADVVSPDREVSFPESVVSMLKGDLGQPPSGWPEALQKKALKGEKPYTVRP 963 (1165)
T ss_dssp HHTTSCCCSTTHHHHHHHHHHHHHHHTCCHHHHHCTTSCCCCCHHHHHHHHTTTCCCTTCCCHHHHHHHHTTCCCCCSCG
T ss_pred HHcCCCccCCChhHHHHHHHHHHHHcCCChhhhccccccccCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCcCcCCc
Confidence 4689999999999999999999999999999999888889999999999999999999999999999999998776
Q ss_pred ---cc--------cc--------CCcccceeec--------------ccCCCCCCCcccccCCCCCCceeeeeecCCceE
Q psy2807 97 ---TL--------DR--------KPECDLMMED--------------EFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTA 143 (288)
Q Consensus 97 ---L~--------~~--------~~deDvL~~a--------------~fg~~~~l~t~~F~~g~~~gee~~v~~~~Gk~~ 143 (288)
|. ++ .++||+|.|+ .||+++.|||+.||+|++.++++.+++++||++
T Consensus 964 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~~ 1043 (1165)
T 2qf7_A 964 GSLLKEADLDAERKVIEKKLEREVSDFEFASYLMYPKVFTDFALASDTYGPVSVLPTPAYFYGLADGEELFADIEKGKTL 1043 (1165)
T ss_dssp GGGSCCCCHHHHHHHHHHHHTSCCCHHHHHHHHHCHHHHHHHHHHHHHHCCGGGSCHHHHHHCCCTTCEEEEEEETTEEE
T ss_pred cccCCcccHHHHHHHHHHhhcCCCCHHHHHHHHcCcHHHHHHHHHHHhcCCcccCCchhhhcCCCcCceeeecccCCccc
Confidence 11 11 4779999555 478999999999999999999999999999999
Q ss_pred EEEEeecccccccCCceEEEEEeCCEEEEEEEeccchhh-hhhccccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCE
Q psy2807 144 YVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAK-KLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDV 222 (288)
Q Consensus 144 ~v~l~~~~~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~-~~~~~~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~ 222 (288)
.+++.+++ ++++.|.++++|++||++++|.+.+..... .....+++++.+...|.|||+|+|++|.|++||.|++||+
T Consensus 1044 ~~~~~~~~-~~~~~g~~~~~~evnG~~~~v~v~~~~~~~~~~~~~~~a~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~ 1122 (1165)
T 2qf7_A 1044 VIVNQAVS-ATDSQGMVTVFFELNGQPRRIKVPDRAHGATGAAVRRKAEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDV 1122 (1165)
T ss_dssp EEEEEEEC-CCCTTSEEEEEEEETTEEEEEEEECGGGTCCSCCCSCBCCTTCTTEEECSSCEEEEEECCSSCCCC---CE
T ss_pred eeEecccC-CCccCCceEEEEEECCEEEEEEecCcccccccccccccCCCCCCceeeCCCCeEEEEEEcCCcCEeCCCCE
Confidence 99999988 777788899999999999999999865322 2223455666677899999999999999999999999999
Q ss_pred EEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 223 LIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 223 l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
|++|||||||++|+||.+|+|.++++++|+.|.. ++|++|+
T Consensus 1123 l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1123 LVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp EEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred EEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 9999999999999999999999999999999999 9999875
No 4
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=99.84 E-value=1.7e-22 Score=201.24 Aligned_cols=149 Identities=14% Similarity=0.140 Sum_probs=81.9
Q ss_pred CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHh---hCCCCcc-
Q psy2807 21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKV---LGSLKDH- 96 (288)
Q Consensus 21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~v---L~g~~~i- 96 (288)
..+||||||||||||||+||.| |+++|+ |+ +||+|+++|++|+||+||+|||++|++++ |++ +++
T Consensus 351 ~~~G~~~~VTP~Sq~vg~~A~~---~v~~~~-~~------~~~~~~~~~~~G~~G~~p~~~~~~~~~~~~~~l~~-~~~~ 419 (539)
T 1rqb_A 351 KAAGFPPLVTPSSQIVGTQAVF---NVMMGE-YK------RMTGEFADIMLGYYGASPADRDPKVVKLAEEQSGK-KPIT 419 (539)
T ss_dssp HHTTCCCCCTTHHHHHHHHHHH---HHHHCT-TS------SCCHHHHHHHTTTTCCCSSCCCHHHHHHHHHHHCC-CCCC
T ss_pred HHcCCCcccCchhhhHHHHHHH---HHhcCc-cc------cCCHHHHHHhCcCCCCCCCCCCHHHHHHHHHHhCC-CCCC
Confidence 4689999999999999999977 556775 76 99999999999999999999999999999 988 666
Q ss_pred -------------cccc--------CCcccceeecccCCCCCCCcccccCCCC-CCce--eee-eecCCceEEEEEeecc
Q psy2807 97 -------------TLDR--------KPECDLMMEDEFGPVDRLPTRIFLNGPN-IGEE--FSC-EFKTGDTAYVTTLSIS 151 (288)
Q Consensus 97 -------------L~~~--------~~deDvL~~a~fg~~~~l~t~~F~~g~~-~gee--~~v-~~~~Gk~~~v~l~~~~ 151 (288)
++++ .++||+|.|++||++. ..|+.+.. ..+. ++- .+. .+...++- ..+
T Consensus 420 ~rp~~~l~~~~~~~~~~~~~~~~~~~~~ed~l~~~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~ 493 (539)
T 1rqb_A 420 QRPADLLPPEWEKQSKEAATLKGFNGTDEDVLTYALFPQVA----PVFFEHRAEGPHSVALTDAQLK-AEAEGDEK-SLA 493 (539)
T ss_dssp SCGGGGCCCCHHHHHHHHTTSTTCCSSHHHHHHHHHCTTTH----HHHHHHGGGCCCCCSCCHHHHH-HHC---------
T ss_pred CCccccCCcCHHHHHHHHHHHhhhcCCHHHHHHHHhCcHHH----HHHHHhhhcCcccccccccccc-hhhhhccc-ccc
Confidence 1111 4789999999999998 88987653 2221 110 011 00000000 000
Q ss_pred cccccCCceEEEEEeCCEEEEEEEeccchhhhhhccccC
Q psy2807 152 ERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKA 190 (288)
Q Consensus 152 ~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~~~~a 190 (288)
......+.+++||+.+.|.|...........+|++
T Consensus 494 ----~~~~~~~~v~v~g~~~~v~v~~~~~~~~~~~~~~~ 528 (539)
T 1rqb_A 494 ----VAGPVTYNVNVGGTVREVTVQQATRASQPELAPED 528 (539)
T ss_dssp ---------------------------------------
T ss_pred ----ccCCeEEEEEECCEEEEEEEccCCCccccccCCCC
Confidence 01124688999999999999876544444445554
No 5
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=99.82 E-value=2.6e-22 Score=196.97 Aligned_cols=95 Identities=19% Similarity=0.168 Sum_probs=82.7
Q ss_pred CCCCCceeecccccchhhhHHHHHhccCchhhhhhcccccccchhHHHHhccccCCCCCCCCHhHHHHhhCCCCcc----
Q psy2807 21 HTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH---- 96 (288)
Q Consensus 21 ~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~~~~~p~svv~~l~G~yG~Pp~gf~~~l~~~vL~g~~~i---- 96 (288)
..+||||||||||||||+||.| |+|+|+||+ +||+|+++|++|+||+||+|||+++++++|++++++
T Consensus 333 ~~~G~~~~VTP~Sq~~g~~A~~---~vl~~~~~~------~~~~~~~~~~~G~~G~~p~~~~~~~~~~~l~~~~~~~~rp 403 (464)
T 2nx9_A 333 EELGFLPLVTPTSQIVGTQAVI---NVVLGERYK------TITKETSGVLKGEYGKTPAPVNTELQARVLAGAEAITCRP 403 (464)
T ss_dssp HHTTTCCSCTTHHHHHHHHHHH---HHHTSSTTS------SCCHHHHHHHTTTTCCCSSCCCHHHHHHHHTTCCCCCSCG
T ss_pred HHcCCCcccCchhHhhHHHHHH---HHHcCCccc------cCCHHHHHHhCCCCCCCCCCCCHHHHHHHhCCCCCCCCCc
Confidence 4689999999999999999977 668899998 999999999999999999999999999999988776
Q ss_pred ----------cccc-----------CCc---ccceeecccCCCCCCCcccccCCCC
Q psy2807 97 ----------TLDR-----------KPE---CDLMMEDEFGPVDRLPTRIFLNGPN 128 (288)
Q Consensus 97 ----------L~~~-----------~~d---eDvL~~a~fg~~~~l~t~~F~~g~~ 128 (288)
++++ .++ ||+|.|++||++. ..|+.+..
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~l~~~~~p~~~----~~~~~~~~ 455 (464)
T 2nx9_A 404 ADLIAAEMPTLQDRVLQQAKEQHITLAENAIDDVLTIALFDQVG----WKFLANRH 455 (464)
T ss_dssp GGSSCCCHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHH----HHHHHHC-
T ss_pred cccCCcCHHHHHHHHHHHhcccccccccccHHHHHHHHcCcHHH----HHHHHhhc
Confidence 1111 267 8999999999988 88886554
No 6
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.82 E-value=3.1e-20 Score=189.88 Aligned_cols=235 Identities=17% Similarity=0.218 Sum_probs=145.9
Q ss_pred eecCCCCCCCCceeecccccchhhhHHHHHhccCchhhhhhccc------ccccchhHHHHhccccCCC-------CCCC
Q psy2807 15 VNVSPPHTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENAD------KIIFPKSVSAFFQGSIGEP-------YQGF 81 (288)
Q Consensus 15 ~~~~~~~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~------~~~~p~svv~~l~G~yG~P-------p~gf 81 (288)
||+|++...|+-|. ..|..++|+++++. -+++...++.. .+....++++|++..+.+| .++|
T Consensus 386 vr~d~~~~~g~~v~----~~yd~~iak~i~~g-~~r~~a~~~~~~al~~~~i~g~~tn~~~~~~~~~~~~f~~~~~~t~~ 460 (681)
T 3n6r_A 386 VRNDTGVYEGGEIS----MYYDPMIAKLCTWA-PTRAAAIEAMRIALDSFEVEGIGHNLPFLSAVMDHPKFISGDMTTAF 460 (681)
T ss_dssp EEEEESCCTTCEEC----TTSCCEEEEEEEEE-SSHHHHHHHHHHHHHHCEECSSCCSHHHHHHHHHCHHHHHCCCCSSH
T ss_pred EEEEccccCCCccC----CCCCCceeEEEEEc-CCHHHHHHHHHHHHhcCEEECccCCHHHHHHHhCCHhhccCCcccch
Confidence 78999999999663 36888889876665 67777766653 4667899999999988777 4555
Q ss_pred CHhHHHHhhCCCCccccccCCcccc--e-------ee------ccc-C---CCCCCCcccccCCCCCCceeeeeec-CCc
Q psy2807 82 PKKLQEKVLGSLKDHTLDRKPECDL--M-------ME------DEF-G---PVDRLPTRIFLNGPNIGEEFSCEFK-TGD 141 (288)
Q Consensus 82 ~~~l~~~vL~g~~~iL~~~~~deDv--L-------~~------a~f-g---~~~~l~t~~F~~g~~~gee~~v~~~-~Gk 141 (288)
.+++....+....+. +++. + .. ..+ + .+.......|-..+ .++++.+.+. .+.
T Consensus 461 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 533 (681)
T 3n6r_A 461 IAEEYPEGFEGVNLP------ETDLRRVAAAAAAMHRVAEIRRTRVSGRMDNHERRVGTEWVVTL-QGADFPVTIAADHD 533 (681)
T ss_dssp HHHHCTTSCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHTTCTTCCTTCCCCCCSEEEEEC-SSCEEEEEEEECSS
T ss_pred hhhccccccCCCCCC------hhHHHHHHHHHHHHHHHhhhcccccccCCCccccCCCcCEEEEE-CCEEEEEEEEEcCC
Confidence 554433333332221 1111 1 00 001 1 11101111110011 2333333331 111
Q ss_pred eEEEEE-ee----c-ccccccCCceEEEEEeCCEEEEEEEeccchh---------hhh-----------hccc-cCCCCC
Q psy2807 142 TAYVTT-LS----I-SERLNDHGERTVFFLYNGQLRSVLIRDKNQA---------KKL-----------KLRS-KADSDT 194 (288)
Q Consensus 142 ~~~v~l-~~----~-~~~~~~~~~~~~~~~vnG~~~~v~v~~~~~~---------~~~-----------~~~~-~a~~~~ 194 (288)
.+.+.+ .. . . .+ ..+...+.+.+||+++.+.+...... ..+ ...+ ++....
T Consensus 534 ~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~dG~~~~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~ 611 (681)
T 3n6r_A 534 GSTVSFDDGSSMRVTS-DW-TPGDQLANLMVDGAPLVLKVGKISGGFRIRTRGADLKVHVRTPRQAELARLMPEKLPPDT 611 (681)
T ss_dssp CEEEEETTSCEEEEEE-CC-CTTCSEEEEEETTEEEEEEEEEETTEEEEECSSCCEEEEEECHHHHHHHTTSCCCCCCCC
T ss_pred eEEEEEeCCcEEEEEE-Ee-cCCCeEEEEEECCEEEEEEEEEeCCEEEEEECCeEEEEEecCchhhhhccccccccCCCC
Confidence 222222 00 0 0 11 12333467788998887655432100 000 0011 123445
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
.+.|+|||||+|++|+|++||.|++||+|++|||||||++|+||.+|+|.++++++||.|.. ++|++|+
T Consensus 612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp CSEEECCSCEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 68899999999999999999999999999999999999999999999999999999999999 9999874
No 7
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.75 E-value=5.3e-20 Score=187.97 Aligned_cols=236 Identities=16% Similarity=0.162 Sum_probs=83.4
Q ss_pred eecCCCCCCCCceeecccccchhhhHHHHHhccCchhhhhhccc------ccccchhHHHHhccccCCC-------CCCC
Q psy2807 15 VNVSPPHTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVMENAD------KIIFPKSVSAFFQGSIGEP-------YQGF 81 (288)
Q Consensus 15 ~~~~~~~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~~~~~------~~~~p~svv~~l~G~yG~P-------p~gf 81 (288)
|++|++...|+-|.. .+..++|+++++. -+++...++.. .+....++++|++..+.+| .++|
T Consensus 393 vr~d~~~~~G~~v~~----~~ds~la~vi~~g-~~r~~a~~~~~~al~~~~i~g~~tn~~~~~~~~~~~~~~~~~~~t~~ 467 (675)
T 3u9t_A 393 RRVDSGVREGDEVSP----FYDPMLAKLIAWG-ETREEARQRLLAMLAETSVGGLRTNLAFLRRILGHPAFAAAELDTGF 467 (675)
T ss_dssp EEEEESCCTTCBCCT----TSCCEEEEEEEEE-SSHHHHHHHHHHHHHTCEEESSCCTHHHHHHHHTCHHHHTTCCCTTH
T ss_pred EEEEecccCCCEeCC----CCCCceEEEEEEe-CCHHHHHHHHHHHhhcEEEECccCCHHHHHHHhCCHHHhCCCcccch
Confidence 689999999998754 3444777665554 56666665543 4667799999999988877 5677
Q ss_pred CHhHHHHhhCCCCccccccCCccccee------e----------cccCCCCCCCcccccCCCCCCceeeeeecCCceEEE
Q psy2807 82 PKKLQEKVLGSLKDHTLDRKPECDLMM------E----------DEFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYV 145 (288)
Q Consensus 82 ~~~l~~~vL~g~~~iL~~~~~deDvL~------~----------a~fg~~~~l~t~~F~~g~~~gee~~v~~~~Gk~~~v 145 (288)
.+++....+....+. ++.++. + ..+..++. ...|..+......+.+.. .|+.+.+
T Consensus 468 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~ 538 (675)
T 3u9t_A 468 IARHQDDLLPAPQAL------PEHFWQAAAEAWLQSEPGHRRDDDPHSPWSR--NDGWRSALARESDLMLRC-RDERRCV 538 (675)
T ss_dssp HHHTHHHHSCCCCCC------CHHHHHHHHHHHHHHCCCCCBTTBTTCGGGC--CSCCCSSSCEEEECCEEE-TTEEECC
T ss_pred hhhcchhhcCCCCCC------hHHHHHHHHHHHHHHhhhhhccccccCcccc--cccccccCCccEEEEEEE-CCEEEEE
Confidence 776666666543221 122220 0 00111111 112222222122233333 4666666
Q ss_pred EEeecccccc-cCCceEEEEEeCCEEEEEEEeccch---------hhhhhc-cc----cCCCCCCCeeecCCcEEEEEEe
Q psy2807 146 TTLSISERLN-DHGERTVFFLYNGQLRSVLIRDKNQ---------AKKLKL-RS----KADSDTAGEIGAPMPGNIIEVK 210 (288)
Q Consensus 146 ~l~~~~~~~~-~~~~~~~~~~vnG~~~~v~v~~~~~---------~~~~~~-~~----~a~~~~~~~i~apm~G~V~~v~ 210 (288)
++...+ ... ......+.+.+||+++.+.+..... .+.+.. .+ .+.....+.|+|||+|+|++|+
T Consensus 539 ~~~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~v~~~~ 617 (675)
T 3u9t_A 539 RLRHAS-PSQYRLDGDDLVSRVDGVTRRSAALRRGRQLFLEWEGELLAIEAVDPIAEAEAAHAHQGGLSAPMNGSIVRVL 617 (675)
T ss_dssp EEEESS-SCSEEEETTEEEEEETTEEEEEEEEEETTEEEEECSSSEEEEEECCHHHHHC---------------------
T ss_pred EEEEcC-CeEEEecCCeEEEEECCEEEEEEEEEeCCEEEEEECCeEEEEEEcCcccccccccCCCCeEECCCCEEEEEEE
Confidence 654332 110 0112357788999988876643211 011111 11 1233456789999999999999
Q ss_pred cCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 211 AKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 211 V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
|++||.|++||+|++||||||+++|+||.+|+|.++++++||.|.. ++|++|++.
T Consensus 618 v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~~~ 673 (675)
T 3u9t_A 618 VEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDEN 673 (675)
T ss_dssp --------------------------------------------------------
T ss_pred eCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCCcCCCCEEEEEecC
Confidence 9999999999999999999999999999999999999999999999 999999753
No 8
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=120.51 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=68.0
Q ss_pred CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCC
Q psy2807 194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVR 266 (288)
Q Consensus 194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~ 266 (288)
++..|.||++|+|.+|+|++||.|++||+|+.||+|||+++|+||++|+|.+++ ++|+.|.. ++|+.|.+.+
T Consensus 4 ~~~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~~~ 76 (84)
T 2kcc_A 4 DPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLELDD 76 (84)
T ss_dssp CTTEECCSSSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEECSC
T ss_pred CCceEECCCCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeCCC
Confidence 456899999999999999999999999999999999999999999999999999 99999999 9999997543
No 9
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=120.02 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=67.1
Q ss_pred CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
+...|.||++|+|.+|+|++||.|++||+|+.||+|||+++|+||++|+|. +++++|+.|.. ++|++|.+
T Consensus 16 ~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~ 86 (100)
T 2dn8_A 16 DPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLEL 86 (100)
T ss_dssp CTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECC
T ss_pred CCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEc
Confidence 456899999999999999999999999999999999999999999999999 99999999999 99999974
No 10
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.63 E-value=1.3e-15 Score=111.66 Aligned_cols=69 Identities=25% Similarity=0.331 Sum_probs=66.2
Q ss_pred eeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 197 ~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
.|+||++|+|.+|++++||.|++||+|+.||+|||+.+|+||++|+|.++++++|+.|.. ++|+.|.+.
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 70 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS 70 (72)
T ss_dssp CEECCSSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGGG
T ss_pred CEECcccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeCC
Confidence 478999999999999999999999999999999999999999999999999999999999 999999764
No 11
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.62 E-value=1.2e-15 Score=114.59 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=65.8
Q ss_pred CCeeecCCcEEEEEE-------ecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 195 AGEIGAPMPGNIIEV-------KAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 195 ~~~i~apm~G~V~~v-------~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
...|+||++|+|.++ ++++||.|++||+|+.||+|||+++|+||++|+|.++++++|+.|.. ++|++|+
T Consensus 4 ~~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 4 GHIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp SEEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred CeEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 357999999999997 99999999999999999999999999999999999999999999999 9999874
No 12
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.60 E-value=3.5e-15 Score=114.32 Aligned_cols=65 Identities=11% Similarity=0.040 Sum_probs=62.0
Q ss_pred CCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCC-eecc-ceeEEEecC
Q psy2807 201 PMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDY-NFMR-PLQLSLNGV 265 (288)
Q Consensus 201 pm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd-~V~~-~~L~~i~~~ 265 (288)
+.+|+|.+|+|++||.|++||+|++||+|||+++|+||++|+|.++++++|+ .|.. ++|++|...
T Consensus 17 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~~ 83 (87)
T 3crk_C 17 MTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEK 83 (87)
T ss_dssp CCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESS
T ss_pred CCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEcc
Confidence 4689999999999999999999999999999999999999999999999999 8999 999999853
No 13
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.59 E-value=7.5e-15 Score=109.07 Aligned_cols=72 Identities=26% Similarity=0.353 Sum_probs=68.1
Q ss_pred CCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 192 SDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 192 ~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
+.+...|.||++|.|.+|++++||.|++||+|+.|++|||+.+|+||++|+|.++++++|+.|.. ++|+.|+
T Consensus 5 ~~~~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 5 KAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp CCCSSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred cCCCeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 44567899999999999999999999999999999999999999999999999999999999999 9999874
No 14
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.59 E-value=2.8e-15 Score=112.43 Aligned_cols=65 Identities=22% Similarity=0.238 Sum_probs=62.4
Q ss_pred cCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 200 APMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 200 apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
++++|+|.+|+|++||.|++||+|+.||+|||+++|+||++|+|.++++++|+.|.. ++|++|.+
T Consensus 12 ~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 12 SIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp SCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred CCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 468999999999999999999999999999999999999999999999999999999 99999875
No 15
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.58 E-value=1.2e-14 Score=106.78 Aligned_cols=69 Identities=29% Similarity=0.414 Sum_probs=66.1
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
...|.||++|+|.+|++++||.|++||+|+.++++||+.+|+||++|+|.++++++|+.|.. ++|+.|+
T Consensus 5 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 5 ENVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp CCEEECSSCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CeEEecCCCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 46799999999999999999999999999999999999999999999999999999999999 9999874
No 16
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.58 E-value=4.2e-15 Score=115.62 Aligned_cols=67 Identities=21% Similarity=0.080 Sum_probs=63.2
Q ss_pred CCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCCC
Q psy2807 201 PMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVRK 267 (288)
Q Consensus 201 pm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~~ 267 (288)
..+|+|.+|+|++||.|++||+|++||+|||+++|+||++|+|.++++++|+.|.. ++|++|++..+
T Consensus 16 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~~~ 83 (93)
T 1k8m_A 16 IREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEAL 83 (93)
T ss_dssp SCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSCC
T ss_pred CCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecCCC
Confidence 36899999999999999999999999999999999999999999999999999999 99999986443
No 17
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=8.3e-15 Score=115.14 Aligned_cols=65 Identities=22% Similarity=0.139 Sum_probs=62.0
Q ss_pred CcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCee-cc-ceeEEEecCC
Q psy2807 202 MPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNF-MR-PLQLSLNGVR 266 (288)
Q Consensus 202 m~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V-~~-~~L~~i~~~~ 266 (288)
.+|+|.+|+|++||.|++||+|++||+|||+++|+||++|+|.++++++|+.| .. ++|++|.+..
T Consensus 20 ~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~~ 86 (98)
T 2dnc_A 20 EEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEEG 86 (98)
T ss_dssp SEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEECTT
T ss_pred ccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEecCC
Confidence 57999999999999999999999999999999999999999999999999998 99 9999998643
No 18
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.55 E-value=2.4e-14 Score=112.37 Aligned_cols=78 Identities=31% Similarity=0.329 Sum_probs=71.8
Q ss_pred CCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCCCCCC
Q psy2807 193 DTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVRKTDP 270 (288)
Q Consensus 193 ~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~~~~~ 270 (288)
.+...|.||++|+|.+|+|++||.|++||+|+.||+|||+++|+||++|+|.++++++|+.|.. ++|++|.+.+...+
T Consensus 12 ~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~~~~~~ 90 (99)
T 2ejm_A 12 ETQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEESDKR 90 (99)
T ss_dssp SCCSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCCCSCCC
T ss_pred CCceEEecCCCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECCCcccc
Confidence 3456899999999999999999999999999999999999999999999999999999999999 99999986554443
No 19
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.55 E-value=5.9e-15 Score=110.00 Aligned_cols=64 Identities=17% Similarity=0.122 Sum_probs=61.9
Q ss_pred cCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 200 APMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 200 apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
++++|+|.+|+|++||.|++||+|+.||+|||+++|+||++|+|.++++++|+.|.. ++|++|+
T Consensus 12 ~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 12 GVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp SCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred CCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 478999999999999999999999999999999999999999999999999999999 9999885
No 20
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=115.94 Aligned_cols=63 Identities=11% Similarity=0.073 Sum_probs=60.8
Q ss_pred CcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCC-eecc-ceeEEEec
Q psy2807 202 MPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDY-NFMR-PLQLSLNG 264 (288)
Q Consensus 202 m~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd-~V~~-~~L~~i~~ 264 (288)
.+|+|++|+|++||.|++||+|++||+|||+++|+||++|+|.++++++|+ .|.. ++|++|..
T Consensus 20 ~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~ 84 (108)
T 2dne_A 20 QAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVG 84 (108)
T ss_dssp CEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEES
T ss_pred ccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEec
Confidence 579999999999999999999999999999999999999999999999999 8999 99999974
No 21
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.52 E-value=3.8e-15 Score=112.09 Aligned_cols=69 Identities=23% Similarity=0.284 Sum_probs=65.0
Q ss_pred eecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCC
Q psy2807 198 IGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVR 266 (288)
Q Consensus 198 i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~ 266 (288)
+.++++|+|.+|++++||.|++||+|+.||+|||+++|+||++|+|.++++++|+.|.. ++|++|.+..
T Consensus 10 ~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~~ 79 (81)
T 1gjx_A 10 IGGHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEG 79 (81)
T ss_dssp CSSCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCSC
T ss_pred CCCCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEecC
Confidence 45689999999999999999999999999999999999999999999999999999999 9999997643
No 22
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.52 E-value=2.9e-14 Score=117.54 Aligned_cols=65 Identities=12% Similarity=0.074 Sum_probs=61.6
Q ss_pred CcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCC-eecc-ceeEEEecCC
Q psy2807 202 MPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDY-NFMR-PLQLSLNGVR 266 (288)
Q Consensus 202 m~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd-~V~~-~~L~~i~~~~ 266 (288)
..|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+ .|.. ++|++|....
T Consensus 40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~~~ 106 (128)
T 1y8o_B 40 TMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE 106 (128)
T ss_dssp SEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEESSG
T ss_pred ccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence 469999999999999999999999999999999999999999999999998 8999 9999998643
No 23
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.51 E-value=3.2e-15 Score=116.37 Aligned_cols=71 Identities=24% Similarity=0.354 Sum_probs=33.3
Q ss_pred CCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 193 DTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 193 ~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
.....|+||++|+|.+|++++||.|++||+|+.||+|||+.+|+||++|+|.++++++|+.|.. ++|++|+
T Consensus 23 ~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 23 MTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp -CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred CCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 3456799999999999999999999999999999999999999999999999999999999999 9998874
No 24
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.51 E-value=3.9e-14 Score=106.15 Aligned_cols=63 Identities=24% Similarity=0.215 Sum_probs=61.4
Q ss_pred cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
+|+|.+|+|++||.|++||+|+.||+|||+++|+||++|+|.++++++|+.|.. ++|++|.+.
T Consensus 14 ~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 14 EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE 77 (80)
T ss_dssp CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence 899999999999999999999999999999999999999999999999999999 999999864
No 25
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.50 E-value=2.6e-15 Score=114.42 Aligned_cols=74 Identities=23% Similarity=0.221 Sum_probs=68.3
Q ss_pred eeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCCCCCC
Q psy2807 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVRKTDP 270 (288)
Q Consensus 197 ~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~~~~~ 270 (288)
.|.+|..|+|.+|+|++||.|++||+|+.||+|||+++|+||++|+|.++++++|+.|.. ++|++|.+.....+
T Consensus 4 ~i~~p~~G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~~~~~~ 78 (85)
T 2k7v_A 4 EVNVPDIVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGAAPA 78 (85)
T ss_dssp CCCCCSCCCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCSSCCC
T ss_pred EEECCCeEEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcCCCCCC
Confidence 477788899999999999999999999999999999999999999999999999999999 99999997654433
No 26
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.49 E-value=5e-14 Score=151.96 Aligned_cols=68 Identities=22% Similarity=0.205 Sum_probs=65.9
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEE
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSL 262 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i 262 (288)
...|.|||+|+|++|+|++||.|++||+|++||||||+++|+||.+|+|.++++++||.|.. ++|++|
T Consensus 1167 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1167 AELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp CEEEECSSCEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred CcEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 35799999999999999999999999999999999999999999999999999999999999 999987
No 27
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.48 E-value=7.5e-14 Score=104.57 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=60.6
Q ss_pred cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecCC
Q psy2807 203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGVR 266 (288)
Q Consensus 203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~~ 266 (288)
+ +|.+|+|++||.|++||+|+.||+|||+++|+||++|+|.++++++|+.|.. ++|++|.+..
T Consensus 13 ~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~~ 76 (79)
T 1iyu_A 13 G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA 76 (79)
T ss_dssp E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecCC
Confidence 6 8999999999999999999999999999999999999999999999999999 9999998654
No 28
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.43 E-value=3.6e-15 Score=112.32 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=61.2
Q ss_pred CCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 201 PMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 201 pm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
..+|+|.+|+|++||.|++||+|++||+|||+++|+||++|+|.++++++|+.|.. ++|++|.+
T Consensus 14 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 14 VADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred CccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 46899999999999999999999999999999999999999999999999999999 99998864
No 29
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=99.21 E-value=8.2e-12 Score=103.81 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=62.8
Q ss_pred eecCCcEEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEE---eeCCCCeec---c-c-eeEEEecCC
Q psy2807 198 IGAPMPGNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVR---SSNLDYNFM---R-P-LQLSLNGVR 266 (288)
Q Consensus 198 i~apm~G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i---~v~~Gd~V~---~-~-~L~~i~~~~ 266 (288)
+++|++|.|+.+.+ ++||.|++||+|++||||||+++|.||++|+|.++ .+..|+.|. . + .|+.|.+.+
T Consensus 39 ~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~~~~ 116 (136)
T 1zko_A 39 HAQEQLGDVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISD 116 (136)
T ss_dssp HHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESC
T ss_pred hhcccCCCcEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEEECC
Confidence 55688899998888 99999999999999999999999999999999999 788999998 4 5 899998765
No 30
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=99.14 E-value=7.2e-11 Score=94.18 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=63.1
Q ss_pred eeecCCcEEEEEEecCCCCEEecCCEEEEEecccee-----------------------------EEEEcCCCeEEEEEe
Q psy2807 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTE-----------------------------TLIHASADGVHKVRS 247 (288)
Q Consensus 197 ~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme-----------------------------~~I~Ap~~G~V~~i~ 247 (288)
.|.|+++|+|.+|+|++||.|++||+|+.|++.+.+ ..|+||++|+|..+.
T Consensus 3 ~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~ 82 (116)
T 2k32_A 3 IIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDAL 82 (116)
T ss_dssp EECCSSCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCS
T ss_pred EEeCcCCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEE
Confidence 589999999999999999999999999999987554 489999999999999
Q ss_pred eCCCCeecc--ceeEEEecC
Q psy2807 248 SNLDYNFMR--PLQLSLNGV 265 (288)
Q Consensus 248 v~~Gd~V~~--~~L~~i~~~ 265 (288)
+++|+.|.. ++|+.|.+.
T Consensus 83 ~~~G~~v~~g~~~l~~i~~~ 102 (116)
T 2k32_A 83 VNIGDYVSASTTELVRVTNL 102 (116)
T ss_dssp CCTTCEECTTTSCCEEEECS
T ss_pred CCCCCEEcCCCcEEEEEECC
Confidence 999999988 789988754
No 31
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=99.13 E-value=4.8e-12 Score=123.08 Aligned_cols=62 Identities=19% Similarity=0.143 Sum_probs=0.0
Q ss_pred cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
.|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++++++|+.|.. ++|+.|+.
T Consensus 16 eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~ 78 (428)
T 3dva_I 16 EGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDA 78 (428)
T ss_dssp ---------------------------------------------------------------
T ss_pred cEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEec
Confidence 499999999999999999999999999999999999999999999999999999 99999973
No 32
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.10 E-value=7.8e-12 Score=112.32 Aligned_cols=61 Identities=23% Similarity=0.201 Sum_probs=0.0
Q ss_pred cEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCe-ecc-ceeEEEe
Q psy2807 203 PGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN-FMR-PLQLSLN 263 (288)
Q Consensus 203 ~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~-V~~-~~L~~i~ 263 (288)
.|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.++++++|+. |.. ++|++|.
T Consensus 17 eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~ 79 (229)
T 1zy8_K 17 EGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV 79 (229)
T ss_dssp ---------------------------------------------------------------
T ss_pred cEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEe
Confidence 599999999999999999999999999999999999999999999999997 999 9999986
No 33
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.87 E-value=6e-10 Score=91.97 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=58.6
Q ss_pred eecCCcEEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCC---eecc----c-eeEEEecCC
Q psy2807 198 IGAPMPGNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDY---NFMR----P-LQLSLNGVR 266 (288)
Q Consensus 198 i~apm~G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd---~V~~----~-~L~~i~~~~ 266 (288)
...++.|.|+.+.+ ++||.|++||++++||||||+++|.||++|+|.+++.+.++ .|.. + -|+.|.+..
T Consensus 30 ~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~ 107 (131)
T 1hpc_A 30 HAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTS 107 (131)
T ss_dssp HHHHHHCSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESS
T ss_pred hhcccCCCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEEEECC
Confidence 34577888999988 99999999999999999999999999999999999976665 4542 2 689888654
No 34
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.76 E-value=4.3e-09 Score=86.50 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=57.6
Q ss_pred eecCCcEEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCC---eecc----c-eeEEEecCC
Q psy2807 198 IGAPMPGNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDY---NFMR----P-LQLSLNGVR 266 (288)
Q Consensus 198 i~apm~G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd---~V~~----~-~L~~i~~~~ 266 (288)
...++.|.|+.+.+ ++|+.|++||++++||+|||.++|.||++|+|.+++...++ .|.. + -|+.|.+..
T Consensus 31 ~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i~~~~ 108 (128)
T 3a7l_A 31 HAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASD 108 (128)
T ss_dssp HHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESC
T ss_pred HHhccCCceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEEEECC
Confidence 34567788888877 99999999999999999999999999999999999875544 4552 2 688888654
No 35
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.73 E-value=3.4e-09 Score=87.12 Aligned_cols=68 Identities=19% Similarity=0.177 Sum_probs=56.3
Q ss_pred ecCCcEEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeC---CCCeecc----c-eeEEEecCC
Q psy2807 199 GAPMPGNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSN---LDYNFMR----P-LQLSLNGVR 266 (288)
Q Consensus 199 ~apm~G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~---~Gd~V~~----~-~L~~i~~~~ 266 (288)
.+++.|.|+.+.+ ++|+.|++||++++||||||.++|.||++|+|.+++.. ..+.|.. + -|+.|.+..
T Consensus 31 a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~ 107 (128)
T 1onl_A 31 AQDALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRD 107 (128)
T ss_dssp HHHHHCSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESC
T ss_pred HhhcCCCceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEEECC
Confidence 3466788888877 99999999999999999999999999999999999865 4445522 3 688888654
No 36
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=98.48 E-value=2.2e-07 Score=86.04 Aligned_cols=69 Identities=22% Similarity=0.284 Sum_probs=59.9
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccce-------------------------------------------
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKT------------------------------------------- 231 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKm------------------------------------------- 231 (288)
...|.++.+|+|.+++|++||.|++||+|+.|+.-..
T Consensus 31 ~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~ 110 (341)
T 3fpp_A 31 KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQA 110 (341)
T ss_dssp EEECCCSSCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSS
T ss_pred EEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4578999999999999999999999999999986210
Q ss_pred ------------------------------------------eEEEEcCCCeEEEEEeeCCCCeecc-ce---eEEEe
Q psy2807 232 ------------------------------------------ETLIHASADGVHKVRSSNLDYNFMR-PL---QLSLN 263 (288)
Q Consensus 232 ------------------------------------------e~~I~Ap~~G~V~~i~v~~Gd~V~~-~~---L~~i~ 263 (288)
.+.|+||++|+|..+++.+|+.|.+ ++ |+.|.
T Consensus 111 ~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~ 188 (341)
T 3fpp_A 111 VSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLA 188 (341)
T ss_dssp STTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEe
Confidence 1569999999999999999999988 65 77775
No 37
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=98.47 E-value=3.4e-07 Score=87.94 Aligned_cols=69 Identities=22% Similarity=0.268 Sum_probs=61.4
Q ss_pred CCeeecCCcEEEEEEec-CCCCEEecCCEEEEEecc--------------------------------------------
Q psy2807 195 AGEIGAPMPGNIIEVKA-KVGQQVKKNDVLIVMSVM-------------------------------------------- 229 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V-~~Gd~V~~G~~l~~lEam-------------------------------------------- 229 (288)
...|.|+.+|.|.+++| ++||.|++||+|+.|++-
T Consensus 121 ~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~ 200 (413)
T 3ne5_B 121 YAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIA 200 (413)
T ss_dssp EEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred eEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 35789999999999999 999999999999999941
Q ss_pred ----ceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 230 ----KTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 230 ----Kme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
.-...|+||++|+|.++.+++|+.|.+ ++|++|.
T Consensus 201 ~~~~~~~~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~ 239 (413)
T 3ne5_B 201 TQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQ 239 (413)
T ss_dssp HTSCCCEEEEECSSSEEEEECCCCTTCEECTTSCSEEEE
T ss_pred hccccccEEEEcCCCeEEEEEEcCCCCEECCCCcEEEEe
Confidence 113689999999999999999999999 9988885
No 38
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=98.45 E-value=3.9e-07 Score=84.93 Aligned_cols=71 Identities=14% Similarity=0.250 Sum_probs=61.8
Q ss_pred CCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccce-----------------------------------------
Q psy2807 193 DTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKT----------------------------------------- 231 (288)
Q Consensus 193 ~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKm----------------------------------------- 231 (288)
.....|.|+.+|+|.+++|++||.|++||+|+.|+.-..
T Consensus 55 ~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a 134 (359)
T 3lnn_A 55 AKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQA 134 (359)
T ss_dssp SSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHH
T ss_pred CcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 345689999999999999999999999999999986311
Q ss_pred -----------------------------------eEEEEcCCCeEEEEEeeCCCCeecc--ceeEEEe
Q psy2807 232 -----------------------------------ETLIHASADGVHKVRSSNLDYNFMR--PLQLSLN 263 (288)
Q Consensus 232 -----------------------------------e~~I~Ap~~G~V~~i~v~~Gd~V~~--~~L~~i~ 263 (288)
.+.|+||++|+|..+.+.+|+.|.. ++|++|.
T Consensus 135 ~~~~~~a~a~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~ 203 (359)
T 3lnn_A 135 QSDYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVA 203 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEe
Confidence 2579999999999999999999987 7788775
No 39
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=98.43 E-value=9.7e-08 Score=86.03 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=60.4
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccc--------------------------------------------
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK-------------------------------------------- 230 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamK-------------------------------------------- 230 (288)
...|.|+.+|+|.+++|++||.|++||+|+.|+.-.
T Consensus 22 ~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~ 101 (277)
T 2f1m_A 22 IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYD 101 (277)
T ss_dssp EEEECCSSCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHH
T ss_pred EEEEEccccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence 357899999999999999999999999999998521
Q ss_pred ---------------------------eeEEEEcCCCeEEEEEeeCCCCeecc-c--eeEEEe
Q psy2807 231 ---------------------------TETLIHASADGVHKVRSSNLDYNFMR-P--LQLSLN 263 (288)
Q Consensus 231 ---------------------------me~~I~Ap~~G~V~~i~v~~Gd~V~~-~--~L~~i~ 263 (288)
-.+.|+||++|+|..+.+++|+.|.+ + +|++|.
T Consensus 102 ~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~ 164 (277)
T 2f1m_A 102 QALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQ 164 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEe
Confidence 02489999999999999999999998 5 788875
No 40
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=98.32 E-value=7.1e-07 Score=72.96 Aligned_cols=65 Identities=12% Similarity=0.188 Sum_probs=51.8
Q ss_pred CcEEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCe---eccc-----eeEEEecCC
Q psy2807 202 MPGNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN---FMRP-----LQLSLNGVR 266 (288)
Q Consensus 202 m~G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~---V~~~-----~L~~i~~~~ 266 (288)
+-|.|+-+.+ ++|+.|++|+++++||+||+..+|.||++|+|.+++....+. +..+ =|+.|.+..
T Consensus 30 ~lGdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~~~~ 103 (125)
T 3klr_A 30 ALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTFSN 103 (125)
T ss_dssp HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEEESC
T ss_pred hCCCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEEECC
Confidence 3466887777 799999999999999999999999999999999998765543 3221 277777543
No 41
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=98.23 E-value=7e-07 Score=84.21 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=60.8
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccce-------------------------------------------
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKT------------------------------------------- 231 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKm------------------------------------------- 231 (288)
...|.|+.+|+|.+++|++||.|++||+|+.|+.-..
T Consensus 43 ~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~ 122 (369)
T 1vf7_A 43 IAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYL 122 (369)
T ss_dssp EEEECCSSCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred EEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 4579999999999999999999999999999985210
Q ss_pred --------------eEEEEcCCCeEEEEEeeCCCCeecc---ceeEEEec
Q psy2807 232 --------------ETLIHASADGVHKVRSSNLDYNFMR---PLQLSLNG 264 (288)
Q Consensus 232 --------------e~~I~Ap~~G~V~~i~v~~Gd~V~~---~~L~~i~~ 264 (288)
.+.|+||++|+|..+.+++|+.|.+ ++|++|..
T Consensus 123 ~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~ 172 (369)
T 1vf7_A 123 QSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQ 172 (369)
T ss_dssp HHHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEEC
T ss_pred HHHHHHHHHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEec
Confidence 2589999999999999999999987 57888753
No 42
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=98.11 E-value=2.9e-06 Score=70.38 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=42.4
Q ss_pred CcEEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeC
Q psy2807 202 MPGNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSN 249 (288)
Q Consensus 202 m~G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~ 249 (288)
.-|.|+-+.+ ++|+.|++|+.+++||+||+..+|.||++|+|.+++-.
T Consensus 47 ~lGdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~~ 95 (137)
T 3tzu_A 47 ALGDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNTA 95 (137)
T ss_dssp HHCSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECHH
T ss_pred hcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehhh
Confidence 3466777766 89999999999999999999999999999999998744
No 43
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=98.11 E-value=3.8e-06 Score=70.07 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=43.6
Q ss_pred EEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCe
Q psy2807 204 GNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYN 253 (288)
Q Consensus 204 G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~ 253 (288)
|.|+-+.+ ++|+.|++|+++++||+||+..+|.||++|+|.+++-...+.
T Consensus 54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d~ 104 (143)
T 3mxu_A 54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAES 104 (143)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTC
T ss_pred CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhC
Confidence 55766655 899999999999999999999999999999999998665544
No 44
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=97.97 E-value=3.3e-07 Score=85.58 Aligned_cols=35 Identities=37% Similarity=0.602 Sum_probs=32.4
Q ss_pred CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
....|.|+.+|.|.+++|++||.|++||+|+.|+.
T Consensus 31 ~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~ 65 (369)
T 4dk0_A 31 NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDS 65 (369)
T ss_dssp SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCC
T ss_pred eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcC
Confidence 45679999999999999999999999999999985
No 45
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=97.73 E-value=2.7e-05 Score=66.21 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=58.9
Q ss_pred CCCCeeecCCcEEEEEEecCCCCEEec----CCEEEEEeccceeEEEEcCCCeEEEEE----------------------
Q psy2807 193 DTAGEIGAPMPGNIIEVKAKVGQQVKK----NDVLIVMSVMKTETLIHASADGVHKVR---------------------- 246 (288)
Q Consensus 193 ~~~~~i~apm~G~V~~v~V~~Gd~V~~----G~~l~~lEamKme~~I~Ap~~G~V~~i---------------------- 246 (288)
.....|.||+.|+|+.+ -+..|.+-+ |+.+++..+ +..++||++|+|..+
T Consensus 10 ~~~~~i~aP~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIG 85 (162)
T 1ax3_A 10 IGEEVFVSPITGEIHPI-TDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFG 85 (162)
T ss_dssp TCCSSCCCCCSEEEEEG-GGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECS
T ss_pred CCCCEEEecCceEEEEe-EECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEEC
Confidence 34557999999999998 677888777 899998876 678999999999988
Q ss_pred -------------eeCCCCeecc-ceeEEEe
Q psy2807 247 -------------SSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 247 -------------~v~~Gd~V~~-~~L~~i~ 263 (288)
++++||.|.+ ++|++++
T Consensus 86 idTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d 116 (162)
T 1ax3_A 86 IDTVSLKGEGFTSFVSEGDRVEPGQKLLEVD 116 (162)
T ss_dssp SSTTTTTTTTEEESCCCCSEECSEEEEEEEC
T ss_pred ccchhcCCCccEEEEeCCCEEcCCCEEEEEC
Confidence 8999999999 9999997
No 46
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=97.72 E-value=4.5e-05 Score=64.35 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=40.2
Q ss_pred EEEEEEec-CCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeC
Q psy2807 204 GNIIEVKA-KVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSN 249 (288)
Q Consensus 204 G~V~~v~V-~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~ 249 (288)
|.|+-+.+ ++|+.|++|+.+++||++|...+|.||++|+|.+++-.
T Consensus 59 GdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~~ 105 (155)
T 3hgb_A 59 GDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNSD 105 (155)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECTH
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhhh
Confidence 45666644 79999999999999999999999999999999988743
No 47
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=97.68 E-value=0.00017 Score=67.90 Aligned_cols=73 Identities=16% Similarity=0.125 Sum_probs=57.8
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEecc----ceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec-CCCCC
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM----KTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG-VRKTD 269 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam----Kme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~-~~~~~ 269 (288)
.-++||..| +++..++.||.|++||+|+.++.| +++.+|+||.+|+|... .....|.. +.|+.|.. .+-..
T Consensus 268 ~~v~A~~~G-~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~--~~~~~V~~Gd~l~~ia~~~~~~~ 344 (354)
T 3cdx_A 268 AYVMAPRTG-LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG--AGPGRVTRGDAVAVVMEDYNDTW 344 (354)
T ss_dssp GEEECSSCE-EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE--ECSSEECTTCEEEEEEEECCC--
T ss_pred EEEECCCCE-EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE--eCCCccCCCCEEEEEeeecCCcC
Confidence 357899999 777889999999999999999986 78899999999999765 46777888 88887763 33444
Q ss_pred CC
Q psy2807 270 PL 271 (288)
Q Consensus 270 ~~ 271 (288)
|.
T Consensus 345 ~~ 346 (354)
T 3cdx_A 345 PQ 346 (354)
T ss_dssp --
T ss_pred cc
Confidence 44
No 48
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=97.68 E-value=4.1e-05 Score=65.08 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=57.4
Q ss_pred CeeecCCcEEEEEEecCCCCEEec----CCEEEEEeccceeEEEEcCCCeEEEEE-------------------------
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKK----NDVLIVMSVMKTETLIHASADGVHKVR------------------------- 246 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~----G~~l~~lEamKme~~I~Ap~~G~V~~i------------------------- 246 (288)
..|.||++|+|+.+. +..|.+-+ |+.+++..+ +..++||++|+|..+
T Consensus 13 ~~i~aP~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidT 88 (161)
T 1f3z_A 13 IEIIAPLSGEIVNIE-DVPDVVFAEKIVGDGIAIKPT---GNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDT 88 (161)
T ss_dssp EEEECSSCEEEEEGG-GSSSHHHHTTSSCEEEEEEEC---SSEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSG
T ss_pred cEEEecCCeEEEEeE-ECCCccccccceeCeEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccc
Confidence 469999999999987 78888777 899988876 478999999999999
Q ss_pred ----------eeCCCCeecc-ceeEEEe
Q psy2807 247 ----------SSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 247 ----------~v~~Gd~V~~-~~L~~i~ 263 (288)
++++||.|.. ++|++++
T Consensus 89 V~l~G~gF~~~V~~Gd~V~~G~~L~~~d 116 (161)
T 1f3z_A 89 VELKGEGFKRIAEEGQRVKVGDTVIEFD 116 (161)
T ss_dssp GGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred hhcCCCccEEEEeCcCEECCCCEEEEEC
Confidence 8999999999 9999997
No 49
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=97.64 E-value=4.4e-05 Score=64.41 Aligned_cols=64 Identities=20% Similarity=0.215 Sum_probs=57.0
Q ss_pred CeeecCCcEEEEEEecCCCCEEec----CCEEEEEeccceeEEEEcCCCeEEEE--------------------------
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKK----NDVLIVMSVMKTETLIHASADGVHKV-------------------------- 245 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~----G~~l~~lEamKme~~I~Ap~~G~V~~-------------------------- 245 (288)
..|.||++|+|+.+. +..|.|-+ |+.+++..+ ++.++||++|+|..
T Consensus 8 ~~i~aP~~G~vv~l~-~v~D~vf~~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidT 83 (154)
T 2gpr_A 8 LKVLAPCDGTIITLD-EVEDEVFKERMLGDGFAINPK---SNDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDT 83 (154)
T ss_dssp EEEECSSSEEEECGG-GSSCHHHHTTSSCEEEEEEES---SSEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSG
T ss_pred CEEEecCCeEEEEee-ECCCccccccceeCeEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcch
Confidence 579999999999986 88888877 899998887 47999999999998
Q ss_pred ---------EeeCCCCeecc-ceeEEEe
Q psy2807 246 ---------RSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 246 ---------i~v~~Gd~V~~-~~L~~i~ 263 (288)
+++++||.|.+ ++|++++
T Consensus 84 v~l~G~gF~~~V~~Gd~V~~G~~L~~~d 111 (154)
T 2gpr_A 84 VSLDGNGFESFVTQDQEVNAGDKLVTVD 111 (154)
T ss_dssp GGGTTCSEEECCCTTCEECTTCEEEEEC
T ss_pred hhcCCCceEEEEcCCCEEcCCCEEEEEC
Confidence 48999999999 9999987
No 50
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=97.44 E-value=0.00058 Score=63.81 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=55.3
Q ss_pred CCCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc----ceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 194 TAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM----KTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 194 ~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam----Kme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
...-|+||..| ++.-.++.||.|++||+|+.|..+ ..+.+|+||.+|+|..... .-.|.. +.|+.|...
T Consensus 256 ~~~~v~A~~~G-l~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~--~~~V~~G~~l~~Ia~~ 329 (331)
T 3na6_A 256 GDCYLFSEHDG-LFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHF--PGMIKSGDCAAVIGVV 329 (331)
T ss_dssp SCCCEECSSCE-EEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEEC--SSEECTTCEEEEEECB
T ss_pred CcEEEeCCCCe-EEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeC--CCccCCCCEEEEEecc
Confidence 34568999999 555689999999999999999986 4678999999999976543 456666 777777543
No 51
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=97.06 E-value=0.0016 Score=61.79 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=51.3
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEec------cceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV------MKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa------mKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
.-|+||.+| ++...++.||.|++||+|+.|.. -.-..+|+||.+|+|.... ..-.|.. +.|+.|.
T Consensus 291 ~~v~A~~~G-l~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~--~~p~V~~G~~l~~i~ 362 (368)
T 3fmc_A 291 RKFHAPKAG-MVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHF--ASASVHQGTELYKVM 362 (368)
T ss_dssp EEEECSSCE-EEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEEC--SSSEECTTCEEEEEE
T ss_pred EEEecCCCE-EEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEEEEEe
Confidence 358999999 55589999999999999999987 3467899999999996554 3355666 6666553
No 52
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=97.03 E-value=0.00074 Score=49.62 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=30.2
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
..|+||..|+|.++++++|+.|..|++|+.|+
T Consensus 49 ~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 49 NQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred EEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 57999999999999999999999999999885
No 53
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=96.95 E-value=0.00094 Score=48.70 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=30.9
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
...|+||.+|+|.++++++||.|..|++|+.|+
T Consensus 44 ~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 44 TVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp EEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred EEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 357999999999999999999999999999986
No 54
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.92 E-value=0.00032 Score=54.26 Aligned_cols=45 Identities=7% Similarity=-0.031 Sum_probs=41.1
Q ss_pred CCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 220 NDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 220 G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
|..++.+++|+....|.||.+|+|.++++++||.|.+ ++|++|+.
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~ 50 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEV 50 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEE
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEe
Confidence 4556788999999999999999999999999999999 99999984
No 55
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=96.90 E-value=0.0011 Score=47.49 Aligned_cols=34 Identities=38% Similarity=0.379 Sum_probs=31.3
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
...|+||.+|+|.++++++|+.|++|++|+.|..
T Consensus 36 ~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 69 (72)
T 1z6h_A 36 EIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN 69 (72)
T ss_dssp EEEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred EEEEECCCCcEEEEEecCCCCEECCCCEEEEEeC
Confidence 3579999999999999999999999999999864
No 56
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=96.83 E-value=0.00085 Score=49.23 Aligned_cols=34 Identities=32% Similarity=0.637 Sum_probs=31.9
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
...|+||.+|+|.++++++||.|..|++|+.|+.
T Consensus 43 ~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 76 (80)
T 1qjo_A 43 SMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp CEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred eEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEc
Confidence 4689999999999999999999999999999874
No 57
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=96.77 E-value=0.0016 Score=47.69 Aligned_cols=34 Identities=26% Similarity=0.501 Sum_probs=31.5
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
...|.||.+|+|.++++++|+.|..|++|+.|+.
T Consensus 41 ~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~ 74 (79)
T 1iyu_A 41 SMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP 74 (79)
T ss_dssp EEEEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred EEEEECCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence 3579999999999999999999999999999874
No 58
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=96.69 E-value=0.0021 Score=47.14 Aligned_cols=34 Identities=24% Similarity=0.242 Sum_probs=31.4
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
...|.||.+|+|.++++++||.|..|++|+.|+.
T Consensus 44 ~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 44 VMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred eEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 3679999999999999999999999999999864
No 59
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=96.62 E-value=0.0025 Score=45.54 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=30.1
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
..|+||..|+|.++++++|+.|..|++|+.|+
T Consensus 43 ~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 43 NEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp EEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred EEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 57999999999999999999999999999875
No 60
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=96.54 E-value=0.002 Score=46.65 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=30.7
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
...|+||..|+|.++++++|+.|..|++|+.||
T Consensus 45 ~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 45 ETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp EEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred eEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 357999999999999999999999999999885
No 61
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=96.30 E-value=0.0044 Score=47.28 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=31.6
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
...|.||..|+|.++++++|+.|..|++|+.|+.
T Consensus 47 ~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~ 80 (93)
T 1k8m_A 47 SVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET 80 (93)
T ss_dssp EEECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred EEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEec
Confidence 3679999999999999999999999999999874
No 62
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=96.29 E-value=0.0018 Score=48.39 Aligned_cols=35 Identities=31% Similarity=0.600 Sum_probs=32.3
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM 229 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam 229 (288)
...|.||..|+|.++++++|+.|..|++|+.|+..
T Consensus 39 ~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 39 SMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp EEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred EEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 45799999999999999999999999999999853
No 63
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=96.26 E-value=0.0051 Score=46.06 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=31.5
Q ss_pred CCeeecCCcEEEEEEecCCCC-EEecCCEEEEEec
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQ-QVKKNDVLIVMSV 228 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd-~V~~G~~l~~lEa 228 (288)
...|.||..|+|.++++++|+ .|..||+|+.|+.
T Consensus 48 ~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~ 82 (87)
T 3crk_C 48 TIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 82 (87)
T ss_dssp EEEEECCSCEEEEEESSCTTCCCEETTCEEEEEES
T ss_pred cceeecCcCcEEEEEEECCCCeEECCCCEEEEEEc
Confidence 467999999999999999999 8999999999874
No 64
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=96.08 E-value=0.018 Score=53.34 Aligned_cols=64 Identities=17% Similarity=0.139 Sum_probs=49.1
Q ss_pred eeecCCcEEEEEEecCCCCEEecCCEEEEEec----cceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV----MKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 197 ~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa----mKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
-+.||..|.+. ..++.|+.|++||+|+.+-. .+...+|+||.+|+|.-.. ..-.|.. +.|+.|.
T Consensus 259 ~~~a~~~G~~~-~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~V~~Gd~l~~ia 327 (332)
T 2qj8_A 259 QLKSPSPGIFE-PRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMYVQGNEEVAILA 327 (332)
T ss_dssp EEECSSSEEEE-ECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEEECTTCEEEEEE
T ss_pred EEeCCCCeEEE-EeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCeeCCCCEEEEEe
Confidence 47899999665 77999999999999999965 5677899999999997664 3344444 5555543
No 65
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=95.90 E-value=0.013 Score=63.05 Aligned_cols=95 Identities=16% Similarity=0.195 Sum_probs=63.5
Q ss_pred eeeeeecCCceEEEEEeeccc--------ccccCCceEEEEEeCCEEEEEEEeccchhhhhhc--cccCCCCCCCeeecC
Q psy2807 132 EFSCEFKTGDTAYVTTLSISE--------RLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKL--RSKADSDTAGEIGAP 201 (288)
Q Consensus 132 e~~v~~~~Gk~~~v~l~~~~~--------~~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~--~~~a~~~~~~~i~ap 201 (288)
++.+++ +|+.+.|++...+. ..+......+.-.+.|...++.|..+.....-.. .-.+ ......|.||
T Consensus 1043 ~~~~e~-nG~~~~v~v~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iea-mK~~~~i~ap 1120 (1150)
T 3hbl_A 1043 TIYYAM-NGQARRIYIKDENVHTNANVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEA-MKMETTIQAP 1120 (1150)
T ss_dssp EEEEEE-TTEEEEEEEECCCSSSCCCCCCBCCTTCSSEEECSSSEEEEEECCCTTCEECTTCEEEEEES-SSCEEEEECS
T ss_pred EEEEEE-CCeEEEEecccccccccccccccCCCCCCceeecCceEEEEEEEeCCCCEECCCCEEEEEEe-ccceeEEecC
Confidence 578888 59999998864320 1111233456667788888877766543211100 0011 1234679999
Q ss_pred CcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 202 MPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 202 m~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
..|+|.+++|++||.|..||+|++|+.
T Consensus 1121 ~~G~v~~i~v~~G~~V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A 1121 FDGVIKQVTVNNGDTIATGDLLIEIEK 1147 (1150)
T ss_dssp SSEEEEEECCCTTCEECTTBEEEEEC-
T ss_pred CCeEEEEEEeCCCCEeCCCCEEEEEec
Confidence 999999999999999999999999973
No 66
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=95.65 E-value=0.0046 Score=46.14 Aligned_cols=31 Identities=3% Similarity=-0.046 Sum_probs=29.4
Q ss_pred EEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 234 LIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 234 ~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
.|+||.+|+|.++++++||.|.+ ++|+.|+.
T Consensus 7 ~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~ 38 (84)
T 2kcc_A 7 VLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEV 38 (84)
T ss_dssp EECCSSSCCEEEESSCTTEEECTTCEEEEEEC
T ss_pred eEECCCCEEEEEEECCCCCEECCCCEEEEEEe
Confidence 59999999999999999999999 99999984
No 67
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.65 E-value=0.0092 Score=45.99 Aligned_cols=35 Identities=9% Similarity=0.132 Sum_probs=32.1
Q ss_pred CCeeecCCcEEEEEEecCCCCEE-ecCCEEEEEecc
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQV-KKNDVLIVMSVM 229 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V-~~G~~l~~lEam 229 (288)
...|.||..|+|.++++++|+.| ..|++|+.|+..
T Consensus 50 ~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~ 85 (98)
T 2dnc_A 50 VVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEE 85 (98)
T ss_dssp EEEEECSSCEEEEECSSCTTCCCEESSCEEEEEECT
T ss_pred eeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEecC
Confidence 46799999999999999999998 999999999853
No 68
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=95.54 E-value=0.0022 Score=48.98 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=0.0
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
...|+||..|+|.++.+++|+.|..|++|+.||
T Consensus 62 ~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 62 QNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp ---------------------------------
T ss_pred cEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 457999999999999999999999999999875
No 69
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=95.52 E-value=0.012 Score=46.16 Aligned_cols=34 Identities=6% Similarity=0.028 Sum_probs=31.5
Q ss_pred CCeeecCCcEEEEEEecCCCC-EEecCCEEEEEec
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQ-QVKKNDVLIVMSV 228 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd-~V~~G~~l~~lEa 228 (288)
...|.||..|+|.++++++|+ .|..|++|++|+.
T Consensus 50 ~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~ 84 (108)
T 2dne_A 50 TVGFESLEECYMAKILVAEGTRDVPIGAIICITVG 84 (108)
T ss_dssp EEEEECSSSEEEEECSSCTTCCSEETTCEEEEEES
T ss_pred eeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEec
Confidence 467999999999999999999 8999999999985
No 70
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=95.44 E-value=0.0027 Score=46.70 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=31.2
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
...|.||..|+|.++++++||.|..|++|+.|+.
T Consensus 45 ~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 45 VLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred EEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 4679999999999999999999999999998763
No 71
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=95.44 E-value=0.015 Score=45.49 Aligned_cols=33 Identities=9% Similarity=0.065 Sum_probs=30.8
Q ss_pred EEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 233 TLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 233 ~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
..|.|+.+|+|.++++++||.|.+ ++|+.|+..
T Consensus 2 ~~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp EEECCSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred eEEeCcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence 578999999999999999999999 999999864
No 72
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=95.33 E-value=0.018 Score=46.83 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=31.6
Q ss_pred CCeeecCCcEEEEEEecCCCC-EEecCCEEEEEec
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQ-QVKKNDVLIVMSV 228 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd-~V~~G~~l~~lEa 228 (288)
...|.||..|+|.++++++|| .|..||+|++|+.
T Consensus 70 ~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~ 104 (128)
T 1y8o_B 70 TIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 104 (128)
T ss_dssp EEEEECCSCEEEEEESSCTTCCSEETTCEEEEEES
T ss_pred eeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEec
Confidence 468999999999999999998 8999999999985
No 73
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=95.22 E-value=0.022 Score=48.15 Aligned_cols=33 Identities=33% Similarity=0.514 Sum_probs=30.1
Q ss_pred CeeecCCcEEEEEE-----------------------------------ecCCCCEEecCCEEEEEec
Q psy2807 196 GEIGAPMPGNIIEV-----------------------------------KAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 196 ~~i~apm~G~V~~v-----------------------------------~V~~Gd~V~~G~~l~~lEa 228 (288)
+.++||..|+|..+ +|++||+|++||+|+.+.-
T Consensus 50 ~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 117 (161)
T 1f3z_A 50 NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCCccEEEEeCcCEECCCCEEEEECH
Confidence 68999999999988 8999999999999998873
No 74
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=95.18 E-value=0.0031 Score=46.30 Aligned_cols=34 Identities=26% Similarity=0.533 Sum_probs=31.3
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
...|.||.+|+|.++++++|+.|..|++|+.|+.
T Consensus 44 ~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (81)
T 1gjx_A 44 TMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77 (81)
T ss_dssp EEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred EEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEe
Confidence 4679999999999999999999999999999864
No 75
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=95.17 E-value=0.013 Score=44.88 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=31.8
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM 229 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam 229 (288)
...|+||+.|+|.++++++|+.|..|++|+.|...
T Consensus 51 ~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~ 85 (99)
T 2ejm_A 51 EHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEE 85 (99)
T ss_dssp EEEEECSSCEEEEEESCCTTEEECTTCBCEEECCC
T ss_pred eEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECC
Confidence 35899999999999999999999999999998753
No 76
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=94.90 E-value=0.026 Score=47.29 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=18.1
Q ss_pred EecCCCCEEecCCEEEEEec
Q psy2807 209 VKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 209 v~V~~Gd~V~~G~~l~~lEa 228 (288)
++|++||+|++||+|+.+.-
T Consensus 93 ~~V~~Gd~V~~G~~L~~~d~ 112 (154)
T 2gpr_A 93 SFVTQDQEVNAGDKLVTVDL 112 (154)
T ss_dssp ECCCTTCEECTTCEEEEECH
T ss_pred EEEcCCCEEcCCCEEEEECH
Confidence 58999999999999998873
No 77
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=94.87 E-value=0.053 Score=45.94 Aligned_cols=55 Identities=16% Similarity=0.136 Sum_probs=47.8
Q ss_pred eeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEE-EEcCCCeEEEEEeeCCC
Q psy2807 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETL-IHASADGVHKVRSSNLD 251 (288)
Q Consensus 197 ~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~-I~Ap~~G~V~~i~v~~G 251 (288)
-..=|..|..+-+.+.+|+.|.+|+.|+.+.+-|-|.. ++||.+|+|.-+.--++
T Consensus 102 L~lvpaeG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~p~ 157 (169)
T 3d4r_A 102 LISVPAEGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEIPS 157 (169)
T ss_dssp CEEEEECSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEETT
T ss_pred EEEEEeCceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEecCC
Confidence 34557889999999999999999999999999999975 99999999987765544
No 78
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=94.66 E-value=0.068 Score=54.45 Aligned_cols=32 Identities=19% Similarity=0.381 Sum_probs=30.3
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
..|.||..|+|.++++++||.|..||+|++||
T Consensus 650 ~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 650 NILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp EEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred eEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 46999999999999999999999999999986
No 79
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=94.64 E-value=0.022 Score=48.18 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=17.1
Q ss_pred ecCCCCEEecCCEEEEEe
Q psy2807 210 KAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 210 ~V~~Gd~V~~G~~l~~lE 227 (288)
+|++||+|++||+|+.+.
T Consensus 99 ~V~~Gd~V~~G~~L~~~d 116 (162)
T 1ax3_A 99 FVSEGDRVEPGQKLLEVD 116 (162)
T ss_dssp SCCCCSEECSEEEEEEEC
T ss_pred EEeCCCEEcCCCEEEEEC
Confidence 999999999999999887
No 80
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=94.16 E-value=0.043 Score=59.24 Aligned_cols=95 Identities=19% Similarity=0.193 Sum_probs=59.7
Q ss_pred eeeeeecCCceEEEEEeeccccc---------ccCCceEEEEEeCCEEEEEEEeccchhhhhhc-cccCCCCCCCeeecC
Q psy2807 132 EFSCEFKTGDTAYVTTLSISERL---------NDHGERTVFFLYNGQLRSVLIRDKNQAKKLKL-RSKADSDTAGEIGAP 201 (288)
Q Consensus 132 e~~v~~~~Gk~~~v~l~~~~~~~---------~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~-~~~a~~~~~~~i~ap 201 (288)
++.+++ +|+.+.|++...+... +......+.-.+.|...++.+..+.....-.. ..-........|.||
T Consensus 1060 ~~~~ev-nG~~~~v~v~~~~~~~~~~~~~~~a~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap 1138 (1165)
T 2qf7_A 1060 TVFFEL-NGQPRRIKVPDRAHGATGAAVRRKAEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAE 1138 (1165)
T ss_dssp EEEEEE-TTEEEEEEEECGGGTCCSCCCSCBCCTTCTTEEECSSCEEEEEECCSSCCCC---CEEEEEEC---CEEEECC
T ss_pred EEEEEE-CCEEEEEEecCcccccccccccccCCCCCCceeeCCCCeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcC
Confidence 588888 5999999986542000 01122356666677777776655432111000 000011234689999
Q ss_pred CcEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 202 MPGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 202 m~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
..|+|.++.|++||.|..||+|++|+
T Consensus 1139 ~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1139 KDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp SSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEec
Confidence 99999999999999999999999886
No 81
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=93.99 E-value=0.071 Score=47.30 Aligned_cols=46 Identities=7% Similarity=-0.005 Sum_probs=37.5
Q ss_pred cCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 219 KNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 219 ~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
.=..-..+++- -...|.|+.+|+|.++++++||.|.+ ++|++|++.
T Consensus 10 ~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~ 56 (277)
T 2f1m_A 10 TTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA 56 (277)
T ss_dssp CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTCEECTTSCSEEECCH
T ss_pred EEEEEEEEEee-eEEEEEccccEEEEEEEcCCCCEecCCCEEEEECcH
Confidence 33444566654 35689999999999999999999999 999999853
No 82
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=93.82 E-value=0.048 Score=49.82 Aligned_cols=56 Identities=11% Similarity=0.043 Sum_probs=40.5
Q ss_pred EecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 209 VKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 209 v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
..|+.|+.-..=..-..+++. -+..|.++.+|+|.++++++||.|.+ ++|++|++.
T Consensus 9 ~~v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 9 LIVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp ----CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred EEEEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence 344555544333444556655 36789999999999999999999999 999999853
No 83
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=93.25 E-value=0.035 Score=57.03 Aligned_cols=95 Identities=9% Similarity=0.117 Sum_probs=58.3
Q ss_pred eeeeeecCCceEEEEEeecccc--------cccCCceEEEEEeCCEEEEEEEeccchhhhhhc-cccCCCCCCCeeecCC
Q psy2807 132 EFSCEFKTGDTAYVTTLSISER--------LNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKL-RSKADSDTAGEIGAPM 202 (288)
Q Consensus 132 e~~v~~~~Gk~~~v~l~~~~~~--------~~~~~~~~~~~~vnG~~~~v~v~~~~~~~~~~~-~~~a~~~~~~~i~apm 202 (288)
++.+++ +|+.+.|++...+.. .+......+...+.|...++.+..+.....-.. ..-........|.||.
T Consensus 615 ~~~vev-nG~~~~v~v~~~~~~~~~~~~~~a~~~~~~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~ 693 (718)
T 3bg3_A 615 QVFFEL-NGQLRSILVKDTQAMKEMHFHPKALKDVKGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPM 693 (718)
T ss_dssp EEEEES-SSSEEEEEEECGGGTCC-----CCCCCSSSCEECSSCEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCC
T ss_pred EEEEEE-CCEEEEEEEeccCccccccccccCCCCCCceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCC
Confidence 577787 488888887553200 011122345556667666666654432111000 0000112235799999
Q ss_pred cEEEEEEecCCCCEEecCCEEEEEe
Q psy2807 203 PGNIIEVKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 203 ~G~V~~v~V~~Gd~V~~G~~l~~lE 227 (288)
.|+|.++.|++||.|..||+|++||
T Consensus 694 ~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 694 EGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp CBCBCCCCCCSEEEECSSCEEECBC
T ss_pred CeEEEEEecCCCCEeCCCCEEEEeC
Confidence 9999999999999999999999874
No 84
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=92.50 E-value=0.12 Score=52.66 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=0.0
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
...|.||..|+|.++++++||.|..||+|++||.
T Consensus 639 ~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~~ 672 (675)
T 3u9t_A 639 EHSIRAPHAGVVKALYCSEGELVEEGTPLVELDE 672 (675)
T ss_dssp ----------------------------------
T ss_pred eEEEECCCCeEEEEEEeCCcCCcCCCCEEEEEec
Confidence 3469999999999999999999999999999974
No 85
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=92.14 E-value=0.19 Score=43.31 Aligned_cols=19 Identities=5% Similarity=0.052 Sum_probs=16.9
Q ss_pred EEeeCCCCeecc-ceeEEEe
Q psy2807 245 VRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 245 ~i~v~~Gd~V~~-~~L~~i~ 263 (288)
+.++++||.|.+ ++|++++
T Consensus 119 ~~~V~~Gd~Vk~Gd~L~~fD 138 (183)
T 3our_B 119 TRIAEEGQTVKAGDTVIEFD 138 (183)
T ss_dssp EECSCTTCEECTTCEEEEEC
T ss_pred eEEEeCcCEEcCCCEEEEEC
Confidence 568889999999 9999987
No 86
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=92.03 E-value=0.2 Score=43.14 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCCCEEecCCEEEEEec
Q psy2807 202 MPGNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 202 m~G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
+.|.=.+++|++||+|++||+|+...-
T Consensus 113 L~G~gF~~~V~~Gd~Vk~Gd~L~~fD~ 139 (183)
T 3our_B 113 LKGEGFTRIAEEGQTVKAGDTVIEFDL 139 (183)
T ss_dssp GTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred cCCccceEEEeCcCEEcCCCEEEEECH
Confidence 344444568999999999999998863
No 87
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=91.88 E-value=0.11 Score=47.77 Aligned_cols=56 Identities=5% Similarity=-0.003 Sum_probs=42.7
Q ss_pred ecCCCCEEecCCEEEEEecc-ceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 210 KAKVGQQVKKNDVLIVMSVM-KTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 210 ~V~~Gd~V~~G~~l~~lEam-Kme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
.|+.|+.-..=..-..+++. .-+..|.|+.+|+|.++++++||.|.+ ++|+.|++.
T Consensus 34 ~v~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~ 91 (359)
T 3lnn_A 34 PATRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSA 91 (359)
T ss_dssp ECEEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECS
T ss_pred EeeecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChH
Confidence 34444433334455566664 456789999999999999999999999 999999864
No 88
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=91.39 E-value=0.27 Score=42.61 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=25.5
Q ss_pred EecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEE
Q psy2807 209 VKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKV 245 (288)
Q Consensus 209 v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~ 245 (288)
++|++|+.|++||.|+.-. +|.|.++|+|.+
T Consensus 23 L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d 53 (193)
T 2xha_A 23 LHVNNGKDVNKGDLIAEEP------PIYARRSGVIVD 53 (193)
T ss_dssp ESCCTTCEECTTCEEEEEC------CEECSSCEEEEE
T ss_pred EEECCCCEEcCCCEEEEeC------cEEEccCEEEEe
Confidence 6899999999999999765 788888888743
No 89
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=90.22 E-value=0.16 Score=47.29 Aligned_cols=56 Identities=5% Similarity=0.001 Sum_probs=38.4
Q ss_pred EecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 209 VKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 209 v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
..|+.|+.-..=..-..+++. -+..|.|+.+|+|.++++++||.|.+ ++|++|++.
T Consensus 21 ~~v~~~~~~~~~~~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~~ 77 (369)
T 1vf7_A 21 VTLEAQTVTLNTELPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPA 77 (369)
T ss_dssp --------CCEEEEEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECCH
T ss_pred EEEEeeccceEEEEEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence 345555544443445566654 35689999999999999999999999 999999853
No 90
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=89.15 E-value=0.4 Score=45.46 Aligned_cols=56 Identities=13% Similarity=0.038 Sum_probs=41.6
Q ss_pred EecCCCCEEecCCEEEEEecc-ceeEEEEcCCCeEEEEEee-CCCCeecc-ceeEEEec
Q psy2807 209 VKAKVGQQVKKNDVLIVMSVM-KTETLIHASADGVHKVRSS-NLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 209 v~V~~Gd~V~~G~~l~~lEam-Kme~~I~Ap~~G~V~~i~v-~~Gd~V~~-~~L~~i~~ 264 (288)
..|+.|+.-..=.....+++. .-+..|.|+.+|+|.++++ ++||.|.+ ++|++|+.
T Consensus 97 ~~v~~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~ 155 (413)
T 3ne5_B 97 ATVTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTI 155 (413)
T ss_dssp EECEEECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEEC
T ss_pred EEEEEeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcC
Confidence 344444444444455555542 3457899999999999998 99999999 99999984
No 91
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=88.62 E-value=0.37 Score=52.36 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=29.5
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEE
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM 226 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~l 226 (288)
..|.||..|+|.+++|++||.|..||+|++|
T Consensus 1205 ~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1205 MVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp EEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred eeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 4699999999999999999999999999987
No 92
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=87.92 E-value=0.7 Score=43.50 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=26.4
Q ss_pred EEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEE
Q psy2807 208 EVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKV 245 (288)
Q Consensus 208 ~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~ 245 (288)
.++|+.||.|++||.|+.=. +|.|..+|+|.+
T Consensus 62 ~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~ 93 (352)
T 2xhc_A 62 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVD 93 (352)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEEE
T ss_pred EEEecCCCEEcCCCEEEEec------cEEEecceEEEe
Confidence 37899999999999999866 788888887743
No 93
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=87.41 E-value=0.72 Score=39.61 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=39.9
Q ss_pred EecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc
Q psy2807 209 VKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR 256 (288)
Q Consensus 209 v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~ 256 (288)
++|++||.|++||.|+..+ .-..+|.|..+|+|.--.+.+|.++..
T Consensus 64 L~V~dG~~V~~G~~laewD--p~t~pIisE~~G~V~f~dii~G~t~~e 109 (190)
T 2auk_A 64 LAKGDGEQVAGGETVANWD--PHTMPVITEVSGFVRFTDMIDGQTITR 109 (190)
T ss_dssp ESSCTTCEECTTCEEEECC--SSEEEEECSSCEEEEEESCCBTTTEEE
T ss_pred EEecCCCEEcCCCEEEEEc--CcCCcEEeccccEEEEEeccCCcceEE
Confidence 7999999999999999764 556789999999999888888877655
No 94
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=87.20 E-value=0.12 Score=49.99 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=0.0
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEecc
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVM 229 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEam 229 (288)
...|.||..|+|.++++++||.|..||+|++|+..
T Consensus 45 ~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~ 79 (428)
T 3dva_I 45 VVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAP 79 (428)
T ss_dssp -----------------------------------
T ss_pred eEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 45799999999999999999999999999999853
No 95
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=87.19 E-value=0.079 Score=48.84 Aligned_cols=55 Identities=13% Similarity=0.071 Sum_probs=41.0
Q ss_pred ecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 210 KAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 210 ~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
.|+.|+.-..=..-..+++-+ +..|.|+.+|+|.++++++||.|.+ ++|++|++.
T Consensus 11 ~v~~~~~~~~v~~~G~v~~~~-~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 66 (369)
T 4dk0_A 11 EVKRGNIEKNVVATGSIESIN-TVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDST 66 (369)
T ss_dssp CCCEECCCCCCEEEEEEECSS-CCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCH
T ss_pred EEEecceeEEEEEeEEEEeee-eEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCH
Confidence 334444444444455666543 4679999999999999999999999 999999853
No 96
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=87.04 E-value=0.11 Score=45.20 Aligned_cols=45 Identities=16% Similarity=0.079 Sum_probs=36.0
Q ss_pred ecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEE--------------------------E--eeCCCCeecc-ceeE
Q psy2807 210 KAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKV--------------------------R--SSNLDYNFMR-PLQL 260 (288)
Q Consensus 210 ~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~--------------------------i--~v~~Gd~V~~-~~L~ 260 (288)
.|+.|+.|++||+|+ -+..|-|.++|+|.- + +|++||.|.+ +.|+
T Consensus 84 ~V~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V~~Ge~L~ 157 (193)
T 2xha_A 84 GLRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLA 157 (193)
T ss_dssp TCCTTCEECTTSBSS------TTSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEE
T ss_pred EcCCCCEEcCCCEEe------cCCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEECCCCCcc
Confidence 389999999999998 356678888888752 3 7888888888 8776
No 97
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=85.84 E-value=0.15 Score=45.21 Aligned_cols=34 Identities=9% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCeeecCCcEEEEEEecCCCCE-EecCCEEEEEec
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQ-VKKNDVLIVMSV 228 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~-V~~G~~l~~lEa 228 (288)
...|.||..|+|.++++++||. |..|++|++|+.
T Consensus 46 ~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~~ 80 (229)
T 1zy8_K 46 VVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVE 80 (229)
T ss_dssp -----------------------------------
T ss_pred eeEEecCCCeEEEEEEecCCCeeecCCCEEEEEec
Confidence 3578999999999999999997 999999999863
No 98
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=83.38 E-value=0.62 Score=43.48 Aligned_cols=59 Identities=8% Similarity=-0.155 Sum_probs=43.1
Q ss_pred eeecCCcEEEEE--EecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEE
Q psy2807 197 EIGAPMPGNIIE--VKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSL 262 (288)
Q Consensus 197 ~i~apm~G~V~~--v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i 262 (288)
.|.|+..|.+.. -.++.|+.|++||+|+.+-. .+|+||.+|.+.-. . .-.|.. +.++.+
T Consensus 265 ~v~a~~~g~~~~~~~~~~~g~~V~~G~~La~i~d----~~v~a~~dG~~i~~--p-~p~V~~G~~~~~i 326 (350)
T 2bco_A 265 TIVRLHDDFDFMFDDNVENFTSFVHGEVFGHDGD----KPLMAKNDNEAIVF--P-NRHVAIGQRAALM 326 (350)
T ss_dssp EEECCSSSEEESSCTTCCBTEECCTTCEEEEETT----EEEECSSSSCEEES--C-CTTCCTTSEEEEE
T ss_pred EEEcCCCCeEEeccccccCCCEeCCCCEEEEECC----EEEEeCCCCEEEEe--c-CCCCCCCcEEEEE
Confidence 578998885552 45899999999999999854 78999999986543 2 455555 544433
No 99
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=81.47 E-value=1.9 Score=36.71 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=8.8
Q ss_pred CeeecCCcEEEEEE
Q psy2807 196 GEIGAPMPGNIIEV 209 (288)
Q Consensus 196 ~~i~apm~G~V~~v 209 (288)
..|.|+..|+|+.+
T Consensus 49 tpV~A~~~G~V~~~ 62 (182)
T 3it5_A 49 YSVVAAHAGTVRVL 62 (182)
T ss_dssp CEEECSSSEEEEEE
T ss_pred CEEEeccCEEEEEE
Confidence 45667777766653
No 100
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=77.60 E-value=0.96 Score=36.91 Aligned_cols=34 Identities=26% Similarity=0.493 Sum_probs=30.2
Q ss_pred CCeeecCCcEEEEEE---ecCCCCEEe---cCC-EEEEEec
Q psy2807 195 AGEIGAPMPGNIIEV---KAKVGQQVK---KND-VLIVMSV 228 (288)
Q Consensus 195 ~~~i~apm~G~V~~v---~V~~Gd~V~---~G~-~l~~lEa 228 (288)
...|.||.+|+|+++ +++.|+.|. .|+ .|+.|+.
T Consensus 74 ~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~~ 114 (136)
T 1zko_A 74 AADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEI 114 (136)
T ss_dssp EEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEE
T ss_pred eEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEEE
Confidence 468999999999999 788999999 898 8888873
No 101
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=73.90 E-value=0.86 Score=43.03 Aligned_cols=33 Identities=12% Similarity=0.024 Sum_probs=12.7
Q ss_pred CCCCCCCceeecccccchhhhHHHHHhccCchhhhh
Q psy2807 19 PPHTSAVPIRSTRGWVWIGYIEECLRQLLIKAKDVM 54 (288)
Q Consensus 19 ~~~~~G~iv~VTPsSqiVG~~A~~~V~N~l~~e~~~ 54 (288)
.|..+|++.+|||+||+.|..|+ .|.|.+-.|.
T Consensus 307 ~P~~vG~~~~v~~~s~~sG~~av---~~~l~~~g~~ 339 (382)
T 2ztj_A 307 PPEVFGVKRKLIIASRLTGRHAI---KARAEELGLH 339 (382)
T ss_dssp CGGGGTCCCEECCC----------------------
T ss_pred CHHHcCCccEEEecccchhHHHH---HHHHHHhCCC
Confidence 46889999999999999999994 4766654443
No 102
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=72.10 E-value=3.6 Score=36.70 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=15.6
Q ss_pred EEecCCCCEEecCCEEEEEec
Q psy2807 208 EVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 208 ~v~V~~Gd~V~~G~~l~~lEa 228 (288)
++.|++||.|++||.|..+-.
T Consensus 134 ~i~Vk~Gd~V~~Gq~IG~vG~ 154 (245)
T 3tuf_B 134 EVSVEQGDKVKQNQVIGKSGK 154 (245)
T ss_dssp EESCCTTCEECTTCEEEECBC
T ss_pred ccccCCCCEECCCCEEEEeCC
Confidence 466788888888888877654
No 103
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=70.64 E-value=4.8 Score=35.91 Aligned_cols=17 Identities=6% Similarity=-0.193 Sum_probs=9.2
Q ss_pred eeCCCCeecc-ceeEEEe
Q psy2807 247 SSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 247 ~v~~Gd~V~~-~~L~~i~ 263 (288)
.|++||.|.+ +.|+.+.
T Consensus 183 ~V~~G~~V~~Gq~IG~vG 200 (252)
T 3nyy_A 183 ELEKGDPVKAGDLLGYMG 200 (252)
T ss_dssp SCCTTCEECTTCEEEECB
T ss_pred cCCCCCEECCCCEEEEEC
Confidence 4555555555 5555554
No 104
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=69.23 E-value=5.9 Score=35.95 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=33.4
Q ss_pred CeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 196 GEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 196 ~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
..|.|+..|+|+.+.-.. .-|-. ++|+--.--..+.+.. .++.|++||.|.. +.|+.+.
T Consensus 191 tpV~A~~~G~V~~~g~~~----~~G~~-ViI~Hg~G~~t~Y~HL----~~i~V~~G~~V~~Gq~IG~vG 250 (282)
T 2hsi_A 191 TPIKAPAAGKVILIGDYF----FNGKT-VFVDHGQGFISMFCHL----SKIDVKLGQQVPRGGVLGKVG 250 (282)
T ss_dssp CEEECSSCEEEEEEEEET----TTEEE-EEEEEETTEEEEEEEE----SEECSCTTCEECTTCEEEECC
T ss_pred CeEEeccCeEEEEEEEcC----CCCCE-EEEEeCCcEEEEEECC----CccccCCcCEECCCCEEEEEC
Confidence 468888888887653111 11322 2333222223334433 2567888888888 8888775
No 105
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=64.99 E-value=7.6 Score=36.09 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=12.5
Q ss_pred CCeeecCCcEEEEEEe
Q psy2807 195 AGEIGAPMPGNIIEVK 210 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~ 210 (288)
...|.|+..|+|+.+.
T Consensus 242 gt~V~A~~~G~V~~~~ 257 (361)
T 2gu1_A 242 GAPVYSTGDGKVIVVR 257 (361)
T ss_dssp TCEEECSSSEEEEEEE
T ss_pred CCeEEEeeCEEEEEeE
Confidence 3579999999998753
No 106
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=61.94 E-value=8.3 Score=37.60 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=18.4
Q ss_pred EEEecCCCCEEecCCEEEEEecc
Q psy2807 207 IEVKAKVGQQVKKNDVLIVMSVM 229 (288)
Q Consensus 207 ~~v~V~~Gd~V~~G~~l~~lEam 229 (288)
+.++++.||.|++||+|++|=+-
T Consensus 413 i~l~~k~G~~V~~g~~l~~i~~~ 435 (474)
T 1uou_A 413 AELLVDVGQRLRRGTPWLRVHRD 435 (474)
T ss_dssp EEECSCTTCEECTTCEEEEEEES
T ss_pred eEEEccCCCEECCCCeEEEEEcC
Confidence 44678889999999999987653
No 107
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=60.63 E-value=9 Score=36.88 Aligned_cols=20 Identities=25% Similarity=0.552 Sum_probs=16.7
Q ss_pred EecCCCCEEecCCEEEEEec
Q psy2807 209 VKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 209 v~V~~Gd~V~~G~~l~~lEa 228 (288)
++++.||.|++||+|++|=+
T Consensus 380 ~~~k~g~~v~~g~~l~~i~~ 399 (433)
T 1brw_A 380 LHKKIGDRVQKGEALATIHS 399 (433)
T ss_dssp ESCCTTCEECTTCEEEEEEE
T ss_pred EeccCCCEECCCCeEEEEEc
Confidence 47888999999999988765
No 108
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=60.32 E-value=9 Score=36.94 Aligned_cols=18 Identities=22% Similarity=0.606 Sum_probs=13.4
Q ss_pred ecCCCCEEecCCEEEEEe
Q psy2807 210 KAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 210 ~V~~Gd~V~~G~~l~~lE 227 (288)
+++.||.|++||+|++|=
T Consensus 384 ~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 384 NKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp SCCTTCEECTTSEEEEEE
T ss_pred ecCCcCEeCCCCeEEEEe
Confidence 567778888888877764
No 109
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=60.15 E-value=9.2 Score=36.75 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=16.7
Q ss_pred EecCCCCEEecCCEEEEEec
Q psy2807 209 VKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 209 v~V~~Gd~V~~G~~l~~lEa 228 (288)
++++.||.|++||+|++|=+
T Consensus 372 ~~~k~g~~v~~g~~l~~i~~ 391 (423)
T 2dsj_A 372 LLKKPGDRVERGEALALVYH 391 (423)
T ss_dssp ESCCTTCEECTTSEEEEEEE
T ss_pred eeccCCCEeCCCCeEEEEEe
Confidence 57888999999999988765
No 110
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=51.36 E-value=9 Score=36.95 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=17.1
Q ss_pred EecCCCCEEecCCEEEEEecc
Q psy2807 209 VKAKVGQQVKKNDVLIVMSVM 229 (288)
Q Consensus 209 v~V~~Gd~V~~G~~l~~lEam 229 (288)
++++.||.|++||+|++|=+-
T Consensus 385 ~~~k~g~~v~~g~~l~~i~~~ 405 (440)
T 2tpt_A 385 DMARLGDQVDGQRPLAVIHAK 405 (440)
T ss_dssp SCCCTTCEEBTTBCSEEEEES
T ss_pred EeccCCCEECCCCeEEEEecC
Confidence 468889999999999888653
No 111
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=46.17 E-value=10 Score=34.61 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=9.5
Q ss_pred EecCCCCEEecCCEEEEE
Q psy2807 209 VKAKVGQQVKKNDVLIVM 226 (288)
Q Consensus 209 v~V~~Gd~V~~G~~l~~l 226 (288)
+.|++||.|++||+|..+
T Consensus 239 i~Vk~Gq~V~~GqvIG~v 256 (291)
T 1qwy_A 239 LTVSAGDKVKAGDQIAYS 256 (291)
T ss_dssp ECCCTTCEECTTCEEEEC
T ss_pred cccCCcCEECCCCEEEEE
Confidence 345555555555555544
No 112
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=45.08 E-value=4.3 Score=38.07 Aligned_cols=29 Identities=24% Similarity=0.200 Sum_probs=22.1
Q ss_pred ecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEE
Q psy2807 210 KAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHK 244 (288)
Q Consensus 210 ~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~ 244 (288)
.|+.|+.|++||+|+ -+..|-|.+||+|.
T Consensus 124 ~v~~g~~v~~G~vla------k~~aiiaeidG~V~ 152 (352)
T 2xhc_A 124 GLRVGTKVKQGLPLS------KNEEYICELDGKIV 152 (352)
T ss_dssp TCCTTCEECTTCBSB------SSSSCBCCSCEEEE
T ss_pred ecCCCCEEccCcEEe------cCceEEeccceEEE
Confidence 489999999999988 24556666666665
No 113
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=42.87 E-value=20 Score=32.39 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=22.0
Q ss_pred EEEEEEecCCCCEEecCCEEEEEec
Q psy2807 204 GNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 204 G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
+.-+.|.+++|+.|++||+|+.++.
T Consensus 70 ~~~v~~~~~dG~~v~~g~~v~~i~G 94 (284)
T 1qpo_A 70 GYRVLDRVEDGARVPPGEALMTLEA 94 (284)
T ss_dssp SEEEEEECCTTCEECTTCEEEEEEE
T ss_pred CEEEEEEcCCCCEecCCcEEEEEEE
Confidence 4457789999999999999999985
No 114
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=40.86 E-value=21 Score=33.33 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=27.7
Q ss_pred EEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 233 TLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 233 ~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
.-|+||.+|.+. ..++.||.|.+ ++|++|..
T Consensus 291 ~~v~A~~~Gl~~-~~v~lGd~V~kG~~la~I~d 322 (368)
T 3fmc_A 291 RKFHAPKAGMVE-YLGKVGVPMKATDPLVNLLR 322 (368)
T ss_dssp EEEECSSCEEEE-ECSCTTCCBCTTCEEEEEEC
T ss_pred EEEecCCCEEEE-EeCCCCCEeCCCCEEEEEEc
Confidence 358999999886 78999999999 99999975
No 115
>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit, electron transpo; HET: HEM; 1.90A {Phormidium laminosum} SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B*
Probab=39.31 E-value=54 Score=28.94 Aligned_cols=75 Identities=11% Similarity=0.097 Sum_probs=49.3
Q ss_pred ccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEE-EcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 188 SKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLI-HASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 188 ~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I-~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
|....++.....|+..|+|.+|.-+ ++|...++|+.-.-+..+ .-|... ++.|++||.|.. ++|.
T Consensus 162 P~G~KSNN~v~~as~~G~I~~I~~~-----ekgg~~vtI~~~~G~~v~~~iP~Gp---~LiV~~G~~v~~~qpLT----- 228 (249)
T 1ci3_M 162 PTGEKSNNAVYNASAAGVITAIAKA-----DDGSAEVKIRTEDGTTIVDKIPAGP---ELIVSEGEEVAAGAALT----- 228 (249)
T ss_dssp TTSCBCSSSCCBCSSCEEEEEEEEC-----TTSCEEEEEECTTSCEEEEEECSSS---CBCCCTTCEECTTCBSB-----
T ss_pred CCCccccCceecccCCeEEEEEEEc-----CCCCEEEEEECCCCCEEEEecCCCC---eEEEecCCEEecCCccc-----
Confidence 4445566677899999999999875 357777777654332221 222222 467999999999 8875
Q ss_pred CCCCCCCCCCCc
Q psy2807 266 RKTDPLTFGRGT 277 (288)
Q Consensus 266 ~~~~~~~~~~~~ 277 (288)
+.||--|-||
T Consensus 229 --nnPNVGGFGQ 238 (249)
T 1ci3_M 229 --NNPNVGGFGQ 238 (249)
T ss_dssp --CCCCCCEEEE
T ss_pred --cCCCCCCcCc
Confidence 4666555444
No 116
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=38.93 E-value=21 Score=32.30 Aligned_cols=23 Identities=9% Similarity=0.027 Sum_probs=20.7
Q ss_pred EEEEecCCCCEEecCCEEEEEec
Q psy2807 206 IIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 206 V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
-+.|.+++|+.|++||+|+.++.
T Consensus 73 ~v~~~~~dG~~v~~g~~v~~i~G 95 (286)
T 1x1o_A 73 AFTPLVAEGARVAEGTEVARVRG 95 (286)
T ss_dssp EEEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEEcCCCCCccCCCEEEEEEE
Confidence 46789999999999999999985
No 117
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=38.29 E-value=22 Score=32.35 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=20.8
Q ss_pred EEEEecCCCCEEecCCEEEEEec
Q psy2807 206 IIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 206 V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
-+.|.+++|+.|++||+|+.++.
T Consensus 76 ~v~~~~~dG~~v~~g~~v~~i~G 98 (287)
T 3tqv_A 76 QITWLYSDAQKVPANARIFELKG 98 (287)
T ss_dssp EEEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEEeCCCCEeeCCCEEEEEEE
Confidence 35789999999999999999985
No 118
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=38.28 E-value=24 Score=31.56 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=20.0
Q ss_pred EEEecCCCCEEecCCEEEEEec
Q psy2807 207 IEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 207 ~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
+.|.+++|+.|.+|++|+.++.
T Consensus 60 v~~~~~eG~~v~~g~~~~~v~G 81 (273)
T 2b7n_A 60 CVQTIKDKERFKPKDALMEIRG 81 (273)
T ss_dssp EEEECCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEEe
Confidence 4578999999999999999996
No 119
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=37.85 E-value=20 Score=32.45 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=20.7
Q ss_pred EEEEecCCCCEEecCCEEEEEec
Q psy2807 206 IIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 206 V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
-+.|.+++|+.|++||+|+.++.
T Consensus 72 ~v~~~~~dG~~v~~g~~v~~i~G 94 (285)
T 1o4u_A 72 LSKFNVEDGEYLEGTGVIGEIEG 94 (285)
T ss_dssp EEEESCCTTCEEESCEEEEEEEE
T ss_pred EEEEEcCCCCCcCCCCEEEEEEE
Confidence 46689999999999999999985
No 120
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=37.79 E-value=10 Score=34.92 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.3
Q ss_pred EEecCCCCEEecCCEEEEEec
Q psy2807 208 EVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 208 ~v~V~~Gd~V~~G~~l~~lEa 228 (288)
++.|++||.|++||+|..+-+
T Consensus 250 ~~~V~~G~~V~~Gq~Ig~~G~ 270 (334)
T 3csq_A 250 PLPFDVGKKLKKGDLMGHTGI 270 (334)
T ss_dssp SCCCCTTCEECTTSEEEECBC
T ss_pred cccCCCcCEECCCCEEEeecC
Confidence 467999999999999998764
No 121
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=37.59 E-value=82 Score=31.54 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=37.4
Q ss_pred ecCCCCEEecCCEEEEEeccc-eeEEEEcC--CCeEEEEEeeCCCCeeccceeEEEe
Q psy2807 210 KAKVGQQVKKNDVLIVMSVMK-TETLIHAS--ADGVHKVRSSNLDYNFMRPLQLSLN 263 (288)
Q Consensus 210 ~V~~Gd~V~~G~~l~~lEamK-me~~I~Ap--~~G~V~~i~v~~Gd~V~~~~L~~i~ 263 (288)
.+++||.|..|+.+.++.--. .++.|..| ..|+|+.| .+|+.--.+.++.++
T Consensus 130 ~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i--~~g~~~v~~~v~~i~ 184 (600)
T 3vr4_A 130 TIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKI--ESGSFTIDDPICVIE 184 (600)
T ss_dssp CSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE--CCEEECTTSCCEEEE
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEe--cCCcceeceeEEEEe
Confidence 489999999999999876432 46777655 67999987 666652226666664
No 122
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=37.29 E-value=28 Score=31.84 Aligned_cols=31 Identities=13% Similarity=0.137 Sum_probs=26.7
Q ss_pred EEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 233 TLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 233 ~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
.-|+||.+|.+. -.++.||.|.+ ++|++|..
T Consensus 258 ~~v~A~~~Gl~~-~~v~~Gd~V~~G~~la~I~d 289 (331)
T 3na6_A 258 CYLFSEHDGLFE-IMIDLGEPVQEGDLVARVWS 289 (331)
T ss_dssp CCEECSSCEEEE-ESSCTTCEECTTCEEEEEEC
T ss_pred EEEeCCCCeEEE-EcCCCCCEEcCCCEEEEEEc
Confidence 357999999775 47999999999 99999874
No 123
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=36.83 E-value=27 Score=38.32 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=39.5
Q ss_pred EEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc
Q psy2807 208 EVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR 256 (288)
Q Consensus 208 ~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~ 256 (288)
.++|+.||.|++||.|+.-.. -.++|.|..+|+|.=..+.+|-++..
T Consensus 1002 ~l~v~~g~~V~~g~~ia~wDp--~~~piise~~G~v~f~d~~~g~t~~~ 1048 (1407)
T 3lu0_D 1002 VLAKGDGEQVAGGETVANWDP--HTMPVITEVSGFVRFTDMIDGQTITR 1048 (1407)
T ss_dssp EESSCSSCEECTTCEEEECCS--SCCCEECSSCEEEEEESCCBTTTEEE
T ss_pred EEEEcCCCEecCCCEEEEEec--CceeEEeccceEEEEeeeccCceeEE
Confidence 468999999999999998865 35689999999998777888877754
No 124
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=36.80 E-value=22 Score=32.79 Aligned_cols=25 Identities=20% Similarity=0.225 Sum_probs=22.3
Q ss_pred EEEEEEecCCCCEEecCCEEEEEec
Q psy2807 204 GNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 204 G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
+.-+.|.+++|+.|++||+|+.++.
T Consensus 107 ~~~v~~~~~dG~~v~~g~~l~~v~G 131 (320)
T 3paj_A 107 QVSIEWHVQDGDTLTPNQTLCTLTG 131 (320)
T ss_dssp CCEEEESSCTTCEECTTCEEEEEEE
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEe
Confidence 4467899999999999999999985
No 125
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=36.18 E-value=24 Score=32.21 Aligned_cols=23 Identities=4% Similarity=0.209 Sum_probs=21.1
Q ss_pred EEEEecCCCCEEecCCEEEEEec
Q psy2807 206 IIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 206 V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
-++|.+++|+.|++||+|+.++.
T Consensus 87 ~v~~~~~dG~~v~~g~~l~~v~G 109 (298)
T 3gnn_A 87 EVDWRHREGDRMSADSTVCELRG 109 (298)
T ss_dssp EEEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEEcCCCCEecCCCEEEEEEe
Confidence 46799999999999999999986
No 126
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=36.02 E-value=27 Score=32.02 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=21.6
Q ss_pred EEEEEecCCCCEEecCCEEEEEec
Q psy2807 205 NIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 205 ~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
.-+.|.+++|+.|++||+|+.++.
T Consensus 84 ~~v~~~~~dG~~v~~g~~v~~i~G 107 (300)
T 3l0g_A 84 VKYEIHKKDGDITGKNSTLVSGEA 107 (300)
T ss_dssp EEEEECCCTTCEECSSCEEEEEEE
T ss_pred eEEEEEeCCCCEeeCCCEEEEEEE
Confidence 456899999999999999999985
No 127
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=35.86 E-value=5.6 Score=29.74 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=13.7
Q ss_pred EecCCCCEEecCCEEE
Q psy2807 209 VKAKVGQQVKKNDVLI 224 (288)
Q Consensus 209 v~V~~Gd~V~~G~~l~ 224 (288)
++|++||.|++||.|.
T Consensus 67 l~V~eGd~V~~G~~Lt 82 (84)
T 2lmc_B 67 LNVFEGERVERGDVIS 82 (84)
T ss_dssp CSSCTTEEECBSCSSB
T ss_pred eEeCCCCEECCCCCcc
Confidence 4799999999999763
No 128
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=35.68 E-value=77 Score=28.82 Aligned_cols=60 Identities=3% Similarity=-0.044 Sum_probs=38.5
Q ss_pred CCeeecCCcEEEEEEecCC-CCEEecCCEEEEEeccc-eeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 195 AGEIGAPMPGNIIEVKAKV-GQQVKKNDVLIVMSVMK-TETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~-Gd~V~~G~~l~~lEamK-me~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
...|.|+..|+|+.+.-.. | -|- +++|+--. -...+.+.. .++.|++||.|.. ++|+.+.
T Consensus 195 GtpV~A~adG~Vv~ag~~~~g----~Gn-~ViI~H~~g~~~T~YaHL----s~i~Vk~Gq~V~~GqvIG~vG 257 (291)
T 1qwy_A 195 NSPVYSLTDGTVVQAGWSNYG----GGN-QVTIKEANSNNYQWYMHN----NRLTVSAGDKVKAGDQIAYSG 257 (291)
T ss_dssp TCEEECSSSEEEEEEEEETTT----TEE-EEEEEETTSSEEEEEEEE----SEECCCTTCEECTTCEEEECC
T ss_pred CCeEEeCcCeEEEEEEEecCC----CCe-EEEEEECCCCEEEEEEcC----CccccCCcCEECCCCEEEEEC
Confidence 3579999999998875432 1 122 33333221 123344443 3578999999999 9999885
No 129
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1
Probab=33.88 E-value=92 Score=28.06 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=49.9
Q ss_pred ccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEE-EcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 188 SKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLI-HASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 188 ~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I-~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
|....++.....|+..|+|.+|.--.. ++|...++|+.-.-+..+ .-|... ++.|++||.|.. ++|.
T Consensus 161 P~G~KSNN~v~~as~~G~I~~I~~~~~---~kgg~~vtI~~~~G~~v~~~iP~Gp---eLiV~eG~~v~~~qpLT----- 229 (292)
T 1q90_A 161 PDGKKSNNTIYNASAAGKIVAITALSE---KKGGFEVSIEKANGEVVVDKIPAGP---DLIVKEGQTVQADQPLT----- 229 (292)
T ss_dssp TTSCCCTTSCCBCSSSEEEEEEEECCT---TTCCEEEEEECSSSCEEEEEECSSS---CBCCCTTCEECTTCBSB-----
T ss_pred CCCccccCceecccCCeEEEEEeeccc---CCCceEEEEEcCCCCEEEEecCCCC---eEEEecCCEEecCCccc-----
Confidence 445566667899999999999976211 257777777654422221 223232 467999999999 8885
Q ss_pred CCCCCCCCCCCc
Q psy2807 266 RKTDPLTFGRGT 277 (288)
Q Consensus 266 ~~~~~~~~~~~~ 277 (288)
+.||--|-||
T Consensus 230 --nnPNVGGFGQ 239 (292)
T 1q90_A 230 --NNPNVGGFGQ 239 (292)
T ss_dssp --CCCCCCEEEE
T ss_pred --CCCCCCCcCc
Confidence 4677555554
No 130
>1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB: 1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A*
Probab=33.57 E-value=90 Score=27.59 Aligned_cols=77 Identities=14% Similarity=0.112 Sum_probs=49.2
Q ss_pred ccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEE-EcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 188 SKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLI-HASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 188 ~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I-~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
|....++.....|+..|+|.+|.--.. ++|...++|+.-.-+..+ .-|... ++.|++||.|.. ++|.
T Consensus 161 P~G~KSNN~v~~as~~G~I~~I~~~~~---~kgg~~vtI~~~~G~~v~~~iP~Gp---~LiV~~G~~v~~~qpLT----- 229 (251)
T 1e2w_A 161 PDGKKSNFTIYNASAAGKIVAITALSE---KKGGFEVSIEKANGEVVVDKIPAGP---DLIVKEGQTVQADQPLT----- 229 (251)
T ss_dssp TTSCBCSSSCCBCSSCEEEEEEEESSS---SSCCEEEEEECTTSCEEEEEECSSS---CBCCCTTCEECTTCBCB-----
T ss_pred CCCccccCceecccCCeEEEEEeeccc---CCCCEEEEEEcCCCCEEEEecCCCC---eEEEecCCEEecCCccc-----
Confidence 334555667789999999999976211 257777777654432221 222222 467999999999 8885
Q ss_pred CCCCCCCCCCCc
Q psy2807 266 RKTDPLTFGRGT 277 (288)
Q Consensus 266 ~~~~~~~~~~~~ 277 (288)
+.||--|-||
T Consensus 230 --nnPNVGGFGQ 239 (251)
T 1e2w_A 230 --NNPNVGGFGQ 239 (251)
T ss_dssp --CCCCCCEEEE
T ss_pred --cCCCCCCcCc
Confidence 4666544444
No 131
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=33.33 E-value=24 Score=32.01 Aligned_cols=25 Identities=8% Similarity=0.133 Sum_probs=22.1
Q ss_pred EEEEEEecCCCCEEecCCEEEEEec
Q psy2807 204 GNIIEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 204 G~V~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
+.-++|.+++|+.|.+|++|+.++.
T Consensus 84 ~~~v~~~~~dG~~v~~g~~~~~v~G 108 (296)
T 1qap_A 84 DVRLTWHVDDGDAIHANQTVFELQG 108 (296)
T ss_dssp SSEEEESCCTTCEECTTCEEEEEEE
T ss_pred CeEEEEEcCCCCEecCCCEEEEEEE
Confidence 4456799999999999999999996
No 132
>1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} SCOP: b.2.6.1 b.84.2.2 PDB: 1tkw_B* 1ctm_A* 2pcf_B*
Probab=31.73 E-value=66 Score=28.45 Aligned_cols=75 Identities=13% Similarity=0.030 Sum_probs=48.1
Q ss_pred ccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccc-eeEEE-EcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 188 SKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMK-TETLI-HASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 188 ~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamK-me~~I-~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
|....++.....|+..|+|.+|.-+ ++|...++|+.-. -+..+ .-|... ++.|++||.|.. ++|.
T Consensus 161 P~G~KSNN~v~~as~~G~I~~I~~~-----ekgg~~vtI~~~~~G~~v~~~iP~Gp---eLiV~~G~~v~~~qpLT---- 228 (252)
T 1hcz_A 161 PDGSKSNNTVYNATAGGIISKILRK-----EKGGYEITIVDASNERQVIDIIPRGL---ELLVSEGESIKLDQPLT---- 228 (252)
T ss_dssp TTSCBCSSSCCBCSSCEEEEEEEEC-----TTSCEEEEEEETTTTEEEEEEECTTC---CBCCCTTCEECTTCBSB----
T ss_pred CCCccccCceecccCCcEEEEEEEc-----CCCCEEEEEecCCCCCEEEEecCCCC---eEEEecCCEEecCCccc----
Confidence 3344556677899999999999875 3577777776543 22111 222222 567999999999 8875
Q ss_pred CCCCCCCCCCCCc
Q psy2807 265 VRKTDPLTFGRGT 277 (288)
Q Consensus 265 ~~~~~~~~~~~~~ 277 (288)
+.||--|-||
T Consensus 229 ---nnPNVGGFGQ 238 (252)
T 1hcz_A 229 ---SNPNVGGFGQ 238 (252)
T ss_dssp ---CCCCCCEEEE
T ss_pred ---cCCCCCCcCc
Confidence 4566544443
No 133
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=31.00 E-value=55 Score=31.79 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=19.6
Q ss_pred CCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 239 ADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 239 ~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
..|+ .++++.||.|.. ++|++|-.
T Consensus 410 ~~Gi--~l~~k~G~~V~~g~~l~~i~~ 434 (474)
T 1uou_A 410 GVGA--ELLVDVGQRLRRGTPWLRVHR 434 (474)
T ss_dssp SCEE--EECSCTTCEECTTCEEEEEEE
T ss_pred CCce--EEEccCCCEECCCCeEEEEEc
Confidence 4454 578999999999 99999963
No 134
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=30.96 E-value=28 Score=31.58 Aligned_cols=22 Identities=5% Similarity=-0.085 Sum_probs=20.0
Q ss_pred EEEecCCCCEEecCCEEEEEec
Q psy2807 207 IEVKAKVGQQVKKNDVLIVMSV 228 (288)
Q Consensus 207 ~~v~V~~Gd~V~~G~~l~~lEa 228 (288)
+.|.+++|+.|.+|++|+.++.
T Consensus 73 v~~~~~dG~~v~~g~~l~~v~G 94 (299)
T 2jbm_A 73 VSWFLPEGSKLVPVARVAEVRG 94 (299)
T ss_dssp EEESSCTTCEECSSEEEEEEEE
T ss_pred EEEEcCCCCCCCCCCEEEEEEE
Confidence 4578999999999999999986
No 135
>2jxm_B Cytochrome F; copper, electron transport, metal-binding, transport; HET: HEC; NMR {Prochlorothrix hollandica} SCOP: i.4.1.1
Probab=29.85 E-value=73 Score=28.09 Aligned_cols=74 Identities=11% Similarity=0.114 Sum_probs=47.2
Q ss_pred ccCCCCCCCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEE-EcCCCeEEEEEeeCCCCeecc-ceeEEEecC
Q psy2807 188 SKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLI-HASADGVHKVRSSNLDYNFMR-PLQLSLNGV 265 (288)
Q Consensus 188 ~~a~~~~~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I-~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~~ 265 (288)
|....++.....|+..|+|.+|.-++ |...++|+.-.-+..+ .-|... ++.|++||.|.. ++|.
T Consensus 163 P~G~KSNN~v~~as~~G~i~~I~~~e------gg~~vtI~~~~G~~v~~~iP~Gp---~LiV~~G~~v~~~qpLT----- 228 (249)
T 2jxm_B 163 PTGELSNNNAFSASIAGTIAAIEDNG------FGFDVTIQPEDGDAVVTSILPGP---ELIVAVGDTVEAGQLLT----- 228 (249)
T ss_dssp TTSCBCSSSCCBCSSCEEEEEECCSS------SEEEEEEECTTSCCEEEEECSSS---CBCCCTTCEECTTCBSB-----
T ss_pred CCCccccCceecccCCeEEEEEEeCC------CcEEEEEECCCCCEEEEecCCCC---eEEEecCCEEecCCccc-----
Confidence 44455666778999999999998754 5555666544322111 222222 467999999999 8875
Q ss_pred CCCCCCCCCCCc
Q psy2807 266 RKTDPLTFGRGT 277 (288)
Q Consensus 266 ~~~~~~~~~~~~ 277 (288)
+.||--|-||
T Consensus 229 --nnPNVGGFGQ 238 (249)
T 2jxm_B 229 --TNPNVGGFGQ 238 (249)
T ss_dssp --CCCCCCEEEE
T ss_pred --cCCCCCCcCc
Confidence 4666555444
No 136
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=29.22 E-value=31 Score=29.18 Aligned_cols=19 Identities=26% Similarity=0.393 Sum_probs=17.0
Q ss_pred EecCCCCEEecCCEEEEEe
Q psy2807 209 VKAKVGQQVKKNDVLIVMS 227 (288)
Q Consensus 209 v~V~~Gd~V~~G~~l~~lE 227 (288)
+.|+.||.|++||+|+.+-
T Consensus 168 i~v~dG~~V~~GdvLArip 186 (190)
T 2auk_A 168 VQLEDGVQISSGDTLARIP 186 (190)
T ss_dssp ESSCTTCEECTTCEEEEEE
T ss_pred EEEcCCCEEcCCCEEEEcc
Confidence 4699999999999999875
No 137
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=28.44 E-value=60 Score=31.03 Aligned_cols=24 Identities=13% Similarity=-0.069 Sum_probs=19.8
Q ss_pred CCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 238 SADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 238 p~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
+..|+ .++.+.||.|.. ++|++|-
T Consensus 366 ~~~Gi--~~~~k~g~~v~~g~~l~~i~ 390 (423)
T 2dsj_A 366 HGVGV--YLLKKPGDRVERGEALALVY 390 (423)
T ss_dssp TTCEE--EESCCTTCEECTTSEEEEEE
T ss_pred cCcCe--eeeccCCCEeCCCCeEEEEE
Confidence 34565 478999999999 9999995
No 138
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=26.73 E-value=30 Score=27.52 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=23.7
Q ss_pred CCeeecCCcEEEEEEecCCC---CEEe---cCC-EEEEEe
Q psy2807 195 AGEIGAPMPGNIIEVKAKVG---QQVK---KND-VLIVMS 227 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~G---d~V~---~G~-~l~~lE 227 (288)
...|.||.+|+|++++++.+ +.|. .|+ -|+.|+
T Consensus 66 ~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i~ 105 (128)
T 3a7l_A 66 ASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIK 105 (128)
T ss_dssp EEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEE
T ss_pred eeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEEE
Confidence 46899999999999987544 4455 355 566555
No 139
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=25.31 E-value=44 Score=31.32 Aligned_cols=59 Identities=14% Similarity=0.019 Sum_probs=31.1
Q ss_pred CCeeecCCcEEEEEEecCCCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEe
Q psy2807 195 AGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLN 263 (288)
Q Consensus 195 ~~~i~apm~G~V~~v~V~~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~ 263 (288)
...|.|+..|+|+.+.-..| -|-.| +|+--.--..+.+..+. + ++.|+.|.. +.|+.+.
T Consensus 256 GtpV~A~~~G~V~~~~~~~g----~G~~V-~I~H~~g~~t~Y~HL~~----~-v~~G~~V~~Gq~IG~vG 315 (371)
T 3slu_A 256 GTPVRASADGVITFKGRKGG----YGNAV-MIRHANGVETLYAHLSA----F-SQAQGNVRGGEVIGFVG 315 (371)
T ss_dssp TCEEECSSSSBEEEEEECGG----GCEEE-EEECSTTEEEEEEEESB----C-CCCCSBCCSSSEEEECB
T ss_pred CCEEEccCCeEEEEEEecCC----CccEE-EEEECCcEEEEEecCcc----c-CCCcCEECCCCEEEEeC
Confidence 35799999999887643221 12222 23322212233343332 2 567777777 7777664
No 140
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.00A {Chromobacterium violaceum} SCOP: c.56.5.7
Probab=25.27 E-value=11 Score=34.79 Aligned_cols=45 Identities=7% Similarity=-0.089 Sum_probs=27.7
Q ss_pred cCCcEEEEEEecCCCCEEecCCEEEEEeccc-----eeEEEEcCCCeEEE
Q psy2807 200 APMPGNIIEVKAKVGQQVKKNDVLIVMSVMK-----TETLIHASADGVHK 244 (288)
Q Consensus 200 apm~G~V~~v~V~~Gd~V~~G~~l~~lEamK-----me~~I~Ap~~G~V~ 244 (288)
++-.|-++.-.++.|+.|++||+|+.+-... -..+|.||.+|+|.
T Consensus 268 ~~~~gg~~~~~~~~g~~V~~G~~La~i~d~~~~~g~~~~~i~aP~~Gvv~ 317 (341)
T 1yw4_A 268 SEAFKLNLADSVENFTLLPDGMLIAEDGAVRYQATGGEERILFPNPAVKP 317 (341)
T ss_dssp C--CCCCSCTTCCBTEECCSSCCCC--------CCSSCCEEESCCTTCCS
T ss_pred cCCceEEEeecCCCcCEeCCCCEEEEECCCceEeCCCceEEEeCCCCcee
Confidence 3433334444578999999999999876542 24579999999763
No 141
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=24.42 E-value=82 Score=30.13 Aligned_cols=52 Identities=23% Similarity=0.336 Sum_probs=34.6
Q ss_pred eeecCCcEEEEEEecC----------CCCEEecCCEEEEEeccceeEEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 197 EIGAPMPGNIIEVKAK----------VGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 197 ~i~apm~G~V~~v~V~----------~Gd~V~~G~~l~~lEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
.|.||-.|+|.++.-. .| .-+++|+ .-+..|+ .++.+.||.|.. ++|++|-.
T Consensus 337 ~v~a~~~G~v~~i~~~~~g~~~~~lGag-r~~~~d~-------------~d~~~Gi--~~~~k~g~~v~~g~~l~~i~~ 399 (433)
T 1brw_A 337 TVTAAADGYVAEMAADDIGTAAMWLGAG-RAKKEDV-------------IDLAVGI--VLHKKIGDRVQKGEALATIHS 399 (433)
T ss_dssp EEECSSSEEEEEECHHHHHHHHHHHTTS-CSSTTCC-------------CCTTCEE--EESCCTTCEECTTCEEEEEEE
T ss_pred EEecCCCeEEEEechHHHHHHHHHcCCC-cCCCCCC-------------CCcCcCe--eEeccCCCEECCCCeEEEEEc
Confidence 5888889988887421 11 1222222 2345565 478999999999 99999953
No 142
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=21.66 E-value=77 Score=29.00 Aligned_cols=31 Identities=6% Similarity=-0.025 Sum_probs=26.1
Q ss_pred EEEEcCCCeEEEEEeeCCCCeecc-ceeEEEec
Q psy2807 233 TLIHASADGVHKVRSSNLDYNFMR-PLQLSLNG 264 (288)
Q Consensus 233 ~~I~Ap~~G~V~~i~v~~Gd~V~~-~~L~~i~~ 264 (288)
.-++|+.+|.+ +..++.|+.|.+ ++|+.+..
T Consensus 268 ~~v~A~~~G~~-~~~~~~g~~V~~G~~La~i~d 299 (354)
T 3cdx_A 268 AYVMAPRTGLF-EPTHYVGEEVRTGETAGWIHF 299 (354)
T ss_dssp GEEECSSCEEE-EESCCTTCEECTTSEEEEEEC
T ss_pred EEEECCCCEEE-EEeCCCCCEeCCCCEEEEEEC
Confidence 34799999965 567899999999 99999874
No 143
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=21.07 E-value=73 Score=28.62 Aligned_cols=18 Identities=28% Similarity=0.178 Sum_probs=14.3
Q ss_pred ceeEEEEcCCCeEEEEEe
Q psy2807 230 KTETLIHASADGVHKVRS 247 (288)
Q Consensus 230 Kme~~I~Ap~~G~V~~i~ 247 (288)
..-++|+|+.+|+|....
T Consensus 188 ~~GtpV~A~~~G~V~~~g 205 (282)
T 2hsi_A 188 PAGTPIKAPAAGKVILIG 205 (282)
T ss_dssp CTTCEEECSSCEEEEEEE
T ss_pred CCCCeEEeccCeEEEEEE
Confidence 345789999999998764
Done!