RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2807
(288 letters)
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 211 bits (539), Expect = 3e-62
Identities = 70/232 (30%), Positives = 105/232 (45%), Gaps = 38/232 (16%)
Query: 48 IKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHT---------- 97
+ + V+ + K+ FP+SV +FF+G IG+P GF K LQ +L + T
Sbjct: 894 LDEQSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEYLEPV 953
Query: 98 ------------LDRKP-ECDLMM--------------EDEFGPVDRLPTRIFLNGPNIG 130
E D++ +++G + L T F G G
Sbjct: 954 DFEKVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFGMRNG 1013
Query: 131 EEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKA 190
E E G + +ISE +++G RT+++ NGQ R + I+D+N ++ KA
Sbjct: 1014 ETVEIEIDKGKRLIIKLETISE-PDENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKA 1072
Query: 191 DSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
D IGA MPG++ EVK VG+ VK N L++ MK ET I A DGV
Sbjct: 1073 DKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGV 1124
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 205 bits (523), Expect = 5e-60
Identities = 70/233 (30%), Positives = 103/233 (44%), Gaps = 39/233 (16%)
Query: 48 IKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHT---------- 97
+ DV+ ++ FP+SV + +G +G+P G+P+ LQ+K L K +T
Sbjct: 911 LTVADVVSPDREVSFPESVVSMLKGDLGQPPSGWPEALQKKALKGEKPYTVRPGSLLKEA 970
Query: 98 ------------LDRKP-ECDLMM--------------EDEFGPVDRLPTRIFLNGPNIG 130
L+R+ + + D +GPV LPT + G G
Sbjct: 971 DLDAERKVIEKKLEREVSDFEFASYLMYPKVFTDFALASDTYGPVSVLPTPAYFYGLADG 1030
Query: 131 EEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQA-KKLKLRSK 189
EE + + G T + ++S + G TVFF NGQ R + + D+ +R K
Sbjct: 1031 EELFADIEKGKTLVIVNQAVSA-TDSQGMVTVFFELNGQPRRIKVPDRAHGATGAAVRRK 1089
Query: 190 ADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
A+ A +GAPMPG I V GQ V DVL+ + MK ET IHA DG
Sbjct: 1090 AEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGT 1142
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 191 bits (487), Expect = 4e-56
Identities = 81/232 (34%), Positives = 116/232 (50%), Gaps = 38/232 (16%)
Query: 48 IKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLG-----------SLKDH 96
+ + A+++ FP+SV F QG IG P+ GFP+ + KVL SL
Sbjct: 466 LSRAEAEAQAEELSFPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLPRVEGRPGASLPPL 525
Query: 97 TLDR------------KPECDLMM--------------EDEFGPVDRLPTRIFLNGPNIG 130
L D++ FGP+D L TR+FL GP I
Sbjct: 526 DLQALEKELVDRHGEEVTPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQGPKIA 585
Query: 131 EEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKA 190
EEF E + G T ++ L++S+ LN G+R VFF NGQLRS+L++D K++ KA
Sbjct: 586 EEFEVELERGKTLHIKALAVSD-LNRAGQRQVFFELNGQLRSILVKDTQAMKEMHFHPKA 644
Query: 191 DSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
D G+IGAPMPG +I++K G +V K L V+S MK ET++ + +G
Sbjct: 645 LKDVKGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGT 696
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead,
biocytin, transferase; NMR {Propionibacterium
freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Length = 77
Score = 80.4 bits (199), Expect = 8e-20
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 188 SKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
+ A GEI AP+ G + ++ K G VK ++V+ MK ET I+A DG
Sbjct: 1 AGAGKAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGK 55
Score = 34.9 bits (81), Expect = 0.003
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVM 226
EI AP G + +V K V+ LI +
Sbjct: 47 EINAPTDGKVEKVLVKERDAVQGGQGLIKI 76
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase,
biotin, ATP-binding, disease mutation,
nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo
sapiens}
Length = 94
Score = 78.2 bits (193), Expect = 8e-19
Identities = 15/67 (22%), Positives = 26/67 (38%)
Query: 176 RDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLI 235
+ S T+ + +PMPG ++ V K G V + + V+ MK + +
Sbjct: 6 HHSSGVDLGTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSM 65
Query: 236 HASADGV 242
A G
Sbjct: 66 TAGKTGT 72
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring
enzyme, biotin, actyl COA carboxylase, fatty acid
synthesis, structural genomics; NMR {Homo sapiens}
Length = 99
Score = 74.8 bits (184), Expect = 2e-17
Identities = 22/55 (40%), Positives = 28/55 (50%)
Query: 188 SKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
+ +T G APM G I +V K G +VK D L+VM MK E I + DG
Sbjct: 7 GVSSQETQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGT 61
Score = 35.9 bits (83), Expect = 0.002
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTET 233
I +P G + +V + G Q ++ L+ +++
Sbjct: 53 TIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEESDK 89
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine,
transfera; HET: KCX; 1.90A {Propionibacterium
freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5
PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Length = 539
Score = 80.4 bits (199), Expect = 3e-17
Identities = 20/178 (11%), Positives = 38/178 (21%), Gaps = 56/178 (31%)
Query: 56 NADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHTLDRKP------------- 102
+ + G G K+ + + ++P
Sbjct: 376 MGEYKRMTGEFADIMLGYYGASPADRDPKVVKLAEEQSGKKPITQRPADLLPPEWEKQSK 435
Query: 103 -----------ECDLMM-------------EDEFGPVDRLPTRIFLNGPNIGEEFSCEFK 138
+ D++ GP T L G+E S
Sbjct: 436 EAATLKGFNGTDEDVLTYALFPQVAPVFFEHRAEGPHSVALTDAQLKAEAEGDEKSLAVA 495
Query: 139 TGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAG 196
G T G +R V ++ +A + +L + D
Sbjct: 496 -------------------GPVTYNVNVGGTVREVTVQQATRASQPELAPEDPEDLEH 534
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP,
structural genomics, NPPSFA; 1.55A {Pyrococcus
horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Length = 74
Score = 73.0 bits (180), Expect = 5e-17
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 193 DTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
+ + APMPG ++ V +VG +V+ L+V+ MK E I + DGV
Sbjct: 3 VSENVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGV 52
Score = 35.3 bits (82), Expect = 0.002
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVM 226
EI +P G + + K G+ V LI +
Sbjct: 44 EIPSPRDGVVKRILVKEGEAVDTGQPLIEL 73
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Ruegeria pomeroyi}
Length = 681
Score = 77.0 bits (190), Expect = 5e-16
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 159 ERTVFFLYNGQLRSVLIRDKNQAKKLKL-RSKADSDTAGEIGAPMPGNIIEVKAKVGQQV 217
G V +R QA+ +L K DT+ + PMPG I++V +VGQ+V
Sbjct: 575 SGGFRIRTRGADLKVHVRTPRQAELARLMPEKLPPDTSKMLLCPMPGLIVKVDVEVGQEV 634
Query: 218 KKNDVLIVMSVMKTETLIHASADGV 242
++ L + MK E ++ A GV
Sbjct: 635 QEGQALCTIEAMKMENILRAEKKGV 659
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic
protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A
2b8f_A 2b8g_A*
Length = 72
Score = 67.2 bits (165), Expect = 6e-15
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 198 IGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
+ M GN+ +V K G Q++K + ++ MK E I A G+
Sbjct: 2 VSIQMAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGI 46
Score = 33.7 bits (78), Expect = 0.007
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS 227
I A G + EVK K G V + DVL+ +S
Sbjct: 38 PIVADRSGIVKEVKKKEGDFVNEGDVLLELS 68
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin
carboxylase, carboxyltransferase, BT domain, BCCP DOM
ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Length = 675
Score = 72.7 bits (179), Expect = 1e-14
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 187 RSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
++A G + APM G+I+ V + GQ V+ L+V+ MK E I A GV
Sbjct: 594 EAEAAHAHQGGLSAPMNGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGV 649
Score = 34.6 bits (80), Expect = 0.040
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 198 IGAPMPGNIIEVKAKVGQQVKKNDVLIVM 226
I AP G + + G+ V++ L+ +
Sbjct: 642 IRAPHAGVVKALYCSEGELVEEGTPLVEL 670
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA,
biotinylation, alternative splicing, ATP-binding,
biotin, fatty acid biosynthesis, ligase; NMR {Homo
sapiens}
Length = 84
Score = 57.7 bits (140), Expect = 2e-11
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 191 DSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
++D + +P G + + + G V+ M VMK ++ G
Sbjct: 2 END-PTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGR 52
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces
lactis}
Length = 1236
Score = 61.2 bits (149), Expect = 1e-10
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 192 SDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADG-VHKVR 246
D A + + G + A VG V+ D +I++ MKTE ++ A+ G V+K+
Sbjct: 1164 PDDAELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKIL 1219
Score = 32.3 bits (74), Expect = 0.19
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 198 IGAPMPGNIIEVKAKVGQQVKKNDVLIVM 226
+GA G + ++ K G V+ D++ V+
Sbjct: 1207 VGATKSGKVYKILHKNGDMVEAGDLVAVI 1235
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 54.8 bits (132), Expect = 5e-10
Identities = 9/53 (16%), Positives = 18/53 (33%)
Query: 190 ADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
+ + +P G + + + G V+ M VMK ++ G
Sbjct: 12 EKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGR 64
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 4e-07
Identities = 46/292 (15%), Positives = 78/292 (26%), Gaps = 114/292 (39%)
Query: 50 AKDVMENADK------------IIF--PKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKD 95
A+DV AD I+ P +++ F G G K+++E + +
Sbjct: 1642 AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG-------KRIRENYSAMIFE 1694
Query: 96 HTLDRKPECDLMMEDEFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAY----VTTLSIS 151
+D K + E F ++ T S T + +T + +
Sbjct: 1695 TIVDGKLKT----EKIFKEINEHSTSYTFRSEK--GLLS------ATQFTQPALTLMEKA 1742
Query: 152 --ERLND------------H--GE-----------------RTVFFLYNGQLRSVLI-RD 177
E L H GE VF Y G V + RD
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF--YRGMTMQVAVPRD 1800
Query: 178 KNQAKK------------LKLRSKADSDTAGEIGAPMPGNIIEVKAKV-----GQQV--- 217
+ +A +G G ++E+ V QQ
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT-GWLVEI---VNYNVENQQYVAA 1856
Query: 218 -KKNDVLIVMSVMKTETLIHA-SADGVHKVRSSNLDYNFMRPLQLSLNGVRK 267
+ +T+ + + + K+ L LSL V
Sbjct: 1857 GDLRAL---------DTVTNVLNFIKLQKIDIIEL------QKSLSLEEVEG 1893
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase
structure, B enzymes, Zn2+ binding site, TIM-barrel
fold, lyase; 1.70A {Vibrio cholerae}
Length = 464
Score = 49.1 bits (118), Expect = 7e-07
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 53 VMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLG 91
V+ K S +G G+ +LQ +VL
Sbjct: 356 VVLGERYKTITKETSGVLKGEYGKTPAPVNTELQARVLA 394
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE);
structural genomics, PSI-2, protein structure
initiative; 2.80A {Cupriavidus metallidurans}
Length = 359
Score = 37.8 bits (88), Expect = 0.002
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 187 RSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM 226
+AD ++ P+ G I+ + ++G +VK DVL +
Sbjct: 49 MIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTI 88
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.5 bits (83), Expect = 0.004
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 12/39 (30%)
Query: 177 DKNQAKKLK--LRSKADSDTAGEIGAPMPGNIIEVKAKV 213
+K KKL+ L+ AD D+A P + +KA +
Sbjct: 18 EKQALKKLQASLKLYAD-DSA-------PA--LAIKATM 46
Score = 30.7 bits (68), Expect = 0.28
Identities = 9/20 (45%), Positives = 10/20 (50%), Gaps = 4/20 (20%)
Query: 83 KKLQEKVLGSLKDHTLDRKP 102
KKLQ SLK + D P
Sbjct: 23 KKLQ----ASLKLYADDSAP 38
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.005
Identities = 51/293 (17%), Positives = 98/293 (33%), Gaps = 77/293 (26%)
Query: 12 DVP---VNVSPPHTSAVPIRSTRGWV--WIGY-----------IEECLRQLLIKAKDVME 55
D+P + +P S + S R + W + IE L L + + +
Sbjct: 317 DLPREVLTTNPRRLSIIA-ESIRDGLATWDNWKHVNCDKLTTIIESSLNVL--EPAEYRK 373
Query: 56 NADKI-IFPKSV-------SAFFQGSIGEPYQGFPKKLQEKVLGSLKDHTLDRKPEC--- 104
D++ +FP S S + I KL + SL ++++P+
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY---SL----VEKQPKESTI 426
Query: 105 ---DLMMEDEFGPVDRLPT--RIFLNGPNIGEEFSCEFKTGDTA--YVTT-----LSISE 152
+ + + ++ R ++ NI + F + Y + L E
Sbjct: 427 SIPSIYL-ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 153 RLNDHGERTVFFLYNGQLRSVLIRDKN--QAKKLKLRSKADSDTAGEIGAPMPGNIIEVK 210
H ER F R V + D + K+R TA + + ++K
Sbjct: 486 ----HPERMTLF------RMVFL-DFRFLEQ---KIRH---DSTAWNASGSILNTLQQLK 528
Query: 211 AKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKVRSSNLDYNFMRPLQLSLN 263
+ ND K E L++A D + K+ + + + L+++L
Sbjct: 529 -FYKPYICDND-------PKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic
protein, MEM protein; 3.50A {Aggregatibacter
actinomycetemcomitans} PDB: 4dk1_A
Length = 369
Score = 35.5 bits (82), Expect = 0.015
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVM 226
++GA + G I ++ K+GQQVKK D+L +
Sbjct: 34 DVGAQVSGKITKLYVKLGQQVKKGDLLAEI 63
Score = 27.4 bits (61), Expect = 5.7
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 198 IGAPMPGNIIEVKAKVGQQV 217
I +P+ G +I GQ V
Sbjct: 157 ITSPIDGTVISTPVSEGQTV 176
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 35.0 bits (81), Expect = 0.021
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVM 226
++GA + G + + +G +VKK+ +L V+
Sbjct: 33 DVGAQVSGQLKTLSVAIGDKVKKDQLLGVI 62
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; misfolded dimer, acyltransferase,
glycolysis; NMR {Escherichia coli}
Length = 85
Score = 32.7 bits (75), Expect = 0.024
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
E+ P + EV KVG +V LI + K + A GV
Sbjct: 4 EVNVPDIVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGV 49
Score = 32.3 bits (74), Expect = 0.027
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 192 SDTAG-EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228
D A E+ AP G + E+K VG +VK ++++ V
Sbjct: 35 GDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 72
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain,
dihydrolipoyl dehydrogenase, multienzyme complex,
post-translational modification; NMR {Neisseria
meningitidis} SCOP: b.84.1.1
Length = 81
Score = 32.6 bits (75), Expect = 0.025
Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 192 SDTAG-EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228
+D A ++ A + G + EVK KVG ++ + +++V+
Sbjct: 40 TDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77
Score = 30.3 bits (69), Expect = 0.16
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 206 IIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
II V+ VG + +D LI + K + A GV
Sbjct: 18 IIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGV 54
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate
dehydrogenase complex; glycolysis, acyltransferase,
lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB:
1iyv_A
Length = 79
Score = 32.2 bits (74), Expect = 0.026
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 192 SDTAG-EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228
S A E+ +P G + V K+G ++K+ D +I +
Sbjct: 37 SAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP 74
Score = 30.3 bits (69), Expect = 0.16
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 206 IIEVKAKVGQQVKKNDVLIVM 226
+IE+ K G ++ L+V+
Sbjct: 15 VIELLVKTGDLIEVEQGLVVL 35
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate
dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Length = 80
Score = 32.2 bits (74), Expect = 0.028
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 192 SDTAG-EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228
D A E+ AP G + E+K VG +VK ++++ V
Sbjct: 39 GDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76
Score = 30.3 bits (69), Expect = 0.15
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 206 IIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
+ EV KVG +V LI + K + A GV
Sbjct: 17 VTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGV 53
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Shewanella
amazonensis} PDB: 3lwu_A*
Length = 368
Score = 34.5 bits (78), Expect = 0.034
Identities = 26/147 (17%), Positives = 43/147 (29%), Gaps = 7/147 (4%)
Query: 102 PECDLMMEDEFGPVDRLPTRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERT 161
P L+ G +D + + E +A L ER++
Sbjct: 197 PYTLLIPNSFGGAMDEAAFVPWWTLAEVASSHGRELGVRVSALTLELGSQERIDLDDALE 256
Query: 162 VFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKND 221
L + + K R + AP G ++E KVG +K D
Sbjct: 257 DAEGILAYLSHRGVIAETVLPKPMKRYGCFLKNYRKFHAPKAG-MVEYLGKVGVPMKATD 315
Query: 222 VL------IVMSVMKTETLIHASADGV 242
L + + T++ DGV
Sbjct: 316 PLVNLLRLDLYGTGEELTVLRLPEDGV 342
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on
protein structural and functional analyses; 2.00A {Homo
sapiens}
Length = 171
Score = 31.4 bits (71), Expect = 0.18
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 123 FLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQL 170
NG G +F + +GD I D +FF NG+
Sbjct: 87 LYNGRAKGRQFGSKCNSGD---RIGCGIEPVSFDVQTAQIFFTKNGKR 131
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid
biosynthesis, hamme structure, selenomethionine, ligase,
transferase; HET: BTN; 1.80A {Escherichia coli} SCOP:
b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Length = 80
Score = 29.5 bits (67), Expect = 0.25
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 212 KVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
+VGQ+V D L ++ MK I A G
Sbjct: 28 EVGQKVNVGDTLCIVEAMKMMNQIEADKSGT 58
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A
3ow7_A 3h9i_A 3h94_A 3h9t_B
Length = 413
Score = 30.9 bits (70), Expect = 0.42
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 190 ADSDTAGEIGAPMPGNIIEVKAK-VGQQVKKNDVLIVM 226
+ + A G I +V VG +V+K L+ +
Sbjct: 116 YNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDL 153
Score = 27.1 bits (60), Expect = 8.6
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 180 QAKKLKLRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVL 223
++L K + + AP+ G I + G + K++V+
Sbjct: 194 DIRRLIATQKIQTRF--TLKAPIDGVITAFDLRAGMNIAKDNVV 235
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN
joint center for structural genomics, JCSG, protein
structu initiative, PSI-2; HET: MSE TAR; 2.10A
{Bacillus halodurans}
Length = 293
Score = 30.7 bits (69), Expect = 0.48
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 50 AKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHTL 98
+ D I+ P S + G + + L E+++ +H +
Sbjct: 52 DEVDWNTVDAILLPISGTN-EAGKVDTIFSNESIVLTEEMIEKTPNHCV 99
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 30.3 bits (69), Expect = 0.69
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228
EI +P+ G ++E+ G LI +
Sbjct: 47 EIPSPVKGKVLEILVPEGTVATVGQTLITLDA 78
Score = 27.6 bits (62), Expect = 5.5
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 204 GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
G I++ K G +V ++DVL + K I + G
Sbjct: 17 GEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGK 55
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 30.1 bits (68), Expect = 0.73
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 50 AKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDHTL 98
+ + D II P S + +G + + L++ L H +
Sbjct: 54 DEIPFQQIDSIILPVSATT-GEGVVSTVFSNEEVVLKQDHLDRTPAHCV 101
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding
domain, transcription; HET: SRL; 2.00A {Homo sapiens}
SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A*
3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Length = 316
Score = 30.2 bits (68), Expect = 0.75
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 83 KKLQEKVLGSLKDHTLDRKPECD 105
+LQE+ +LK + +P+
Sbjct: 245 DQLQEQFAITLKSYIECNRPQPA 267
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme,
NR1D2, DNA-binding, metal-binding, nucleus, repressor,
transcription; HET: HEM; 1.90A {Homo sapiens} PDB:
2v7c_A 2v0v_A
Length = 199
Score = 28.9 bits (65), Expect = 1.5
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 83 KKLQEKVLGSLKDHTLDRKPEC 104
+ LQE ++ +L+ + P
Sbjct: 146 EALQETLIRALRTLIMKNHPNE 167
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET:
VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A*
3o1d_A* 3o1e_A*
Length = 302
Score = 29.0 bits (65), Expect = 1.9
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 83 KKLQEKVLGSLKDHTLDRKPE 103
+ LQ+++ L+ + + P
Sbjct: 230 EALQDRLCDVLQAYIRIQHPG 250
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain,
transcription; HET: FEX; 1.80A {Homo sapiens} SCOP:
a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A*
3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A*
3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A*
3p88_A* ...
Length = 232
Score = 28.4 bits (64), Expect = 2.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 83 KKLQEKVLGSLKDHTLDRKPE 103
+KLQE +L L+ +PE
Sbjct: 165 EKLQEPLLDVLQKLCKIHQPE 185
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor
ligand binding domain, binding, metal-binding, nucleus,
phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB:
3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A*
4lbd_A*
Length = 266
Score = 28.5 bits (64), Expect = 2.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 83 KKLQEKVLGSLKDHTLDRKPE 103
LQE +L +LK + R+P
Sbjct: 194 DMLQEPLLEALKVYVRKRRPS 214
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor,
adipogenesis, RXRA, nucleus, transcription; HET: DKA;
1.52A {Homo sapiens} PDB: 1i7i_A* 3ty0_A* 1zeo_A*
2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A*
2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A*
3g9e_A* 3gbk_A* 3ia6_A* ...
Length = 269
Score = 28.6 bits (64), Expect = 2.4
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 83 KKLQEKVLGSLKDHTLDRKPE 103
+ +Q+ +L +L+ PE
Sbjct: 200 EDIQDNLLQALELQLKLNHPE 220
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding
domain, orphan nuclear receptor, testicular R 4,
signaling protein; 3.00A {Homo sapiens}
Length = 249
Score = 28.0 bits (62), Expect = 2.9
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 83 KKLQEKVLGSLKDHTLDRKPE 103
+K QE L+D+ E
Sbjct: 168 EKFQEAAQMELQDYVQATYSE 188
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A
{Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A*
1lv2_A*
Length = 237
Score = 28.1 bits (63), Expect = 3.1
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 83 KKLQEKVLGSLKDHTLDRKPEC 104
K+L+ +V SL+D+ DR+ +
Sbjct: 168 KRLRSQVQVSLEDYINDRQYDS 189
>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module,
bacterial pathogen, sialic acid, sugar-binding protein;
HET: SIA; 2.2A {Clostridium perfringens}
Length = 191
Score = 27.8 bits (61), Expect = 3.4
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 120 TRIFLNGPNIGEEFSCEFKTGDTAYVTTLSISERLNDHGERTVFFLYNGQLRSVLIRDK 178
+IFLNG + K + + + I + +G F G + + I DK
Sbjct: 120 AKIFLNGSLVKTVSDPNIKFLNAINLNSGFIGKTDRANGYNEYLF--RGNIDFMNIYDK 176
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding
protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP:
a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Length = 246
Score = 28.1 bits (63), Expect = 3.5
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 83 KKLQEKVLGSLKDHTLDRKPECD 105
+LQE++ +L+ + ++
Sbjct: 180 DQLQEEMALTLQSYIKGQQRRPR 202
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor,
transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP:
a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A*
1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A*
2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Length = 244
Score = 27.8 bits (62), Expect = 3.6
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 83 KKLQEKVLGSLKDHTLDRKPEC 104
+KLQ+ + +L+D+ + E
Sbjct: 174 QKLQDVLHEALQDYEAGQHMED 195
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 26.9 bits (60), Expect = 3.7
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 260 LSLNGVRKTDPLTFGRGTQ 278
+ + + L FG GT
Sbjct: 93 MRGDYGGSGNKLIFGTGTL 111
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor,
coactivator, ligand, hormone/growth factor receptor
complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Length = 303
Score = 27.8 bits (62), Expect = 3.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 83 KKLQEKVLGSLKDHTLDRKPE 103
KLQE +L +LK + R+P
Sbjct: 197 DKLQEPLLEALKIYIRKRRPS 217
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand,
phosphatidyl glycerol, CO-repressor peptide,
transcription; HET: DR9; 1.20A {Mus musculus} PDB:
3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Length = 246
Score = 27.8 bits (62), Expect = 4.1
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 83 KKLQEKVLGSLKDHTLDRKPEC 104
K QEK +L D+TL P
Sbjct: 176 KDAQEKANAALLDYTLSHYPHS 197
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster
scaffolder, Fe2S2, homodimer, transport, glutathione,
thioredoxin fold; HET: GSH; 1.90A {Escherichia coli}
PDB: 1yka_A
Length = 135
Score = 27.0 bits (60), Expect = 4.2
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 186 LRSKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVM 226
+ S P ++ K+ +Q+ +N +L+ M
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMSTTIEKIQRQIAENPILLYM 41
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling,
alternative DNA-binding, metal-binding, nucleus,
polymorphism, receptor transcription; HET: 965; 2.00A
{Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B*
1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A*
1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Length = 283
Score = 27.8 bits (62), Expect = 4.2
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 84 KLQEKVLGSLKDHTLDRKPE 103
+LQ + +L + P
Sbjct: 216 RLQHTYVEALHAYVSIHHPH 235
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear
receptor, structural proteomic europe, spine, structural
genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB:
1z5x_U* 2q60_A
Length = 282
Score = 27.8 bits (62), Expect = 4.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 83 KKLQEKVLGSLKDHTLDRKPE 103
+ L+EKV SL+ + + PE
Sbjct: 210 EALREKVYASLEAYCKHKYPE 230
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding,
metal-binding, nucleus, transcription, transcription
regulation, zinc-finger; 2.60A {Crassostrea gigas}
Length = 243
Score = 27.4 bits (61), Expect = 4.5
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 83 KKLQEKVLGSLKDHTLDRKPEC 104
+Q+ +L ++ D P+
Sbjct: 163 FNMQQSLLDAIVDTAQKYHPDN 184
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 27.7 bits (61), Expect = 4.7
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 83 KKLQEKVLGSLKDHTLDRKPEC 104
+ +QE+V +L D+T+ P+
Sbjct: 282 EGVQEQVNAALLDYTMCNYPQQ 303
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand
binding pocket, hormone/growth factor complex; HET: P1A;
2.75A {Tribolium castaneum}
Length = 235
Score = 27.4 bits (61), Expect = 4.8
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 83 KKLQEKVLGSLKDHTLDRKPEC 104
+ L+EK+ G L+++T P
Sbjct: 164 EMLREKIYGVLEEYTRTTHPNE 185
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone
receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1
PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A*
2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A*
3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A*
...
Length = 240
Score = 27.4 bits (61), Expect = 4.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 83 KKLQEKVLGSLKDHTLDRKPE 103
+ L+EKV SL+ + + PE
Sbjct: 168 EALREKVYASLEAYCKHKYPE 188
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet,
transcription regula; 2.60A {Homo sapiens}
Length = 245
Score = 27.5 bits (61), Expect = 4.9
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 84 KLQEKVLGSLKDHTLDRKPE 103
+LQE +L +L+ L +P
Sbjct: 192 QLQETLLRALRALVLKNRPL 211
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor
ligand-binding domain, anti-parallel alpha- sandwich,
ecdysone receptor, ECR, gene regulation; HET: FLC 20E
EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB:
1r1k_D* 3ixp_D* 1r20_D*
Length = 266
Score = 27.4 bits (61), Expect = 5.2
Identities = 4/22 (18%), Positives = 12/22 (54%)
Query: 83 KKLQEKVLGSLKDHTLDRKPEC 104
+++Q L +L+ + L++
Sbjct: 193 EEIQRYYLNTLRVYILNQNSAS 214
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase;
pyrimidine-nucleoside phosphorylase, structural
genomics; 1.80A {Thermus thermophilus}
Length = 423
Score = 27.7 bits (62), Expect = 5.6
Identities = 5/36 (13%), Positives = 15/36 (41%), Gaps = 9/36 (25%)
Query: 207 IEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
+ + K G +V++ + L + ++ G+
Sbjct: 370 VYLLKKPGDRVERGEALAL---------VYHRRRGL 396
>2p54_A PPAR-alpha, peroxisome proliferator-activated receptor alpha; PPAR
alpha GW735 SRC1 agonist HDLC, transcription; HET: 735;
1.79A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fei_A*
1i7g_A* 3kdu_A* 3kdt_A* 2rew_A* 1kkq_A* 3g8i_A* 3et1_A*
2znn_A* 3sp6_A* 1k7l_A* 2npa_A* 2xyj_A* 2xyw_A* 2xyx_A*
2q5g_A* 3gwx_A* 3dy6_A* 1gwx_A* 3peq_A* ...
Length = 267
Score = 27.2 bits (60), Expect = 5.9
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 83 KKLQEKVLGSLKDHTLDRKPE 103
+K+QE ++ L+ H P+
Sbjct: 197 EKMQEGIVHVLRLHLQSNHPD 217
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN
factor, transcription-receptor-agonist comple; HET: 470;
1.75A {Homo sapiens} PDB: 1yok_A* 1yuc_A* 4dor_A*
1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Length = 257
Score = 27.0 bits (60), Expect = 6.3
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 83 KKLQEKVLGSLKDHTLDRKPEC 104
+ +QE+V +L D+T+ P+
Sbjct: 187 EGVQEQVNAALLDYTMCNYPQQ 208
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A
{Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB:
1azy_A 1tpt_A 1otp_A
Length = 440
Score = 27.3 bits (61), Expect = 6.5
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 9/32 (28%)
Query: 207 IEVKAKVGQQVKKNDVLIVMSVMKTETLIHAS 238
A++G QV L V IHA
Sbjct: 383 FTDMARLGDQVDGQRPLAV---------IHAK 405
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain
movement, transferase; HET: MES; 2.10A {Geobacillus
stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Length = 433
Score = 27.3 bits (61), Expect = 6.6
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 9/39 (23%)
Query: 207 IEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKV 245
I + K+G +V+K + L IH++ V V
Sbjct: 378 IVLHKKIGDRVQKGEALAT---------IHSNRPDVLDV 407
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics,
glycosyltransferase, transferase; HET: MSE THM; 1.94A
{Staphylococcus aureus}
Length = 436
Score = 27.3 bits (61), Expect = 6.7
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 9/39 (23%)
Query: 207 IEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHKV 245
I + K+G +V++ + L+ IH++ V V
Sbjct: 381 IVLNKKIGDKVEEGESLLT---------IHSNRQDVDDV 410
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural
genomics, joint center for structural genomics, J
protein structure initiative, PSI-2; HET: MSE; 2.00A
{Ruegeria SP}
Length = 331
Score = 27.1 bits (59), Expect = 6.7
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 198 IGAPMPGNIIEVKAKVGQQVKKNDVL-IVMSVMKTETL---IHASADGV 242
+ + G + E+ +G+ V++ D++ V S +T A GV
Sbjct: 260 LFSEHDG-LFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGV 307
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo
ligand binding pocket, hormone/growth factor complex;
HET: P1A; 2.75A {Tribolium castaneum}
Length = 248
Score = 26.9 bits (60), Expect = 7.2
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 83 KKLQEKVLGSLKDHTLDRKPE 103
+K+QE L +L+ + +R+
Sbjct: 177 EKIQEIYLEALRAYVDNRRKP 197
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity,
retinoid ligand complexes, drug design, antiparallel
alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo
sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A*
1exa_A* 1exx_A* 1dkf_B*
Length = 236
Score = 26.9 bits (60), Expect = 7.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 84 KLQEKVLGSLKDHTLDRKPE 103
KLQE +L +L+ + R+P
Sbjct: 171 KLQEPLLEALRLYARRRRPS 190
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor,
ligand binding; HET: LPP; 2.4A {Drosophila melanogaster}
SCOP: a.123.1.1
Length = 279
Score = 26.8 bits (59), Expect = 7.3
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 83 KKLQEKVLGSLKDHTLDRKPE 103
+ +EKV L +H P
Sbjct: 201 EMCREKVYACLDEHCRLEHPG 221
>2qj8_A MLR6093 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Length = 332
Score = 27.1 bits (59), Expect = 7.5
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 198 IGAPMPGNIIEVKAKVGQQVKKNDVL-IVMSVMKTETL---IHASADGV 242
+ +P PG I E + V +V++ DV+ ++ + I A +
Sbjct: 260 LKSPSPG-IFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKST 307
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein,
phosphorylation, PAIR-RULE protein; 2.8A {Drosophila
melanogaster} PDB: 2xhs_A
Length = 243
Score = 27.0 bits (60), Expect = 7.5
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 83 KKLQEKVLGSLKDHTLDRKPEC 104
+ + V +L D+TL P
Sbjct: 174 SEGHDNVQAALLDYTLTCYPSV 195
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase,
chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens}
SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A
2j0f_A
Length = 474
Score = 27.0 bits (60), Expect = 7.9
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 9/32 (28%)
Query: 207 IEVKAKVGQQVKKNDVLIVMSVMKTETLIHAS 238
E+ VGQ++++ + +H
Sbjct: 413 AELLVDVGQRLRRGTPWLR---------VHRD 435
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 26.2 bits (58), Expect = 7.9
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 260 LSLNGVRKTDPLTFGRGTQ 278
+ + + L FG GT
Sbjct: 93 MRGDYGGSGNKLIFGTGTL 111
>3to3_A Petrobactin biosynthesis protein ASBB; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
alpha-beta structure; HET: MSE ATP; 2.38A {Bacillus
anthracis}
Length = 619
Score = 26.9 bits (59), Expect = 8.5
Identities = 4/47 (8%), Positives = 15/47 (31%)
Query: 157 HGERTVFFLYNGQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMP 203
HG+ + G + ++D ++ + + + +
Sbjct: 439 HGQNMILVHKEGLPVRIALKDFHEGLEFYRPFLKEMNKCPDFTKMHK 485
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 27.0 bits (59), Expect = 9.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 83 KKLQEKVLGSLKDHTLDRKPEC 104
+ L+EKV SL+ + + PE
Sbjct: 395 EALREKVYASLEAYCKHKYPEQ 416
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 26.8 bits (60), Expect = 10.0
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 168 GQLRSVLIRDKNQAKKLKLRSKADSDTAGEIGAPMPGNII 207
GQ R V + N ++LK ++ G P G +I
Sbjct: 17 GQQRRV---NANHQRRLKTSAEKADYDDNLFGEPAEGIVI 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.397
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,192,417
Number of extensions: 245869
Number of successful extensions: 583
Number of sequences better than 10.0: 1
Number of HSP's gapped: 573
Number of HSP's successfully gapped: 103
Length of query: 288
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 195
Effective length of database: 4,105,140
Effective search space: 800502300
Effective search space used: 800502300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)