RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2807
(288 letters)
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of
transcarboxylase (TC 1.3S) {Propionibacterium
freudenreichii, subsp. shermanii [TaxId: 1744]}
Length = 77
Score = 58.4 bits (141), Expect = 4e-12
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 188 SKADSDTAGEIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
+ A GEI AP+ G + ++ K G VK ++V+ MK ET I+A DG
Sbjct: 1 AGAGKAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGK 55
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 80
Score = 37.0 bits (86), Expect = 2e-04
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 204 GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
G I++ K G +V ++DVL + K I + G
Sbjct: 16 GEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGK 54
Score = 31.6 bits (72), Expect = 0.018
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228
EI +P+ G ++E+ G LI +
Sbjct: 46 EIPSPVKGKVLEILVPEGTVATVGQTLITLDA 77
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial
branched-chain alpha-ketoacid dehydrogenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 87
Score = 36.3 bits (84), Expect = 4e-04
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 204 GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
+ E K G V + D + + K I + DGV
Sbjct: 19 VTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGV 57
Score = 30.1 bits (68), Expect = 0.063
Identities = 4/32 (12%), Positives = 10/32 (31%)
Query: 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228
I + G I ++ + L+ +
Sbjct: 49 TITSRYDGVIKKLYYNLDDIAYVGKPLVDIET 80
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Escherichia coli [TaxId: 562]}
Length = 80
Score = 35.2 bits (81), Expect = 8e-04
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 197 EIGAPMPGN----IIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
E+ P G + EV KVG +V LI + K + A GV
Sbjct: 4 EVNVPDIGGDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGV 53
Score = 27.9 bits (62), Expect = 0.32
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 200 APMPGNIIEVKAKVGQQVKKNDVLIVMSV 228
AP G + E+K VG +VK ++++ V
Sbjct: 48 APFAGVVKELKVNVGDKVKTGSLIMIFEV 76
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Azotobacter vinelandii [TaxId: 354]}
Length = 79
Score = 35.2 bits (81), Expect = 0.001
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 202 MPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
G +IE+ K G ++ L+V+ K + + GV
Sbjct: 11 GDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGV 51
Score = 24.4 bits (53), Expect = 5.6
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228
E+ +P G + V K+G ++K+ D +I +
Sbjct: 43 EVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP 74
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase
{Escherichia coli [TaxId: 562]}
Length = 80
Score = 34.9 bits (80), Expect = 0.001
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 197 EIGAPMPGNI-------IEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
+ +PM G + +VGQ+V D L ++ MK I A G
Sbjct: 6 IVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGT 58
Score = 29.5 bits (66), Expect = 0.10
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 198 IGAPMPGNIIEVKAKVGQQVKKNDVLIVM 226
I A G + + + GQ V+ ++ L+V+
Sbjct: 51 IEADKSGTVKAILVESGQPVEFDEPLVVI 79
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Neisseria meningitidis [TaxId: 487]}
Length = 81
Score = 34.4 bits (79), Expect = 0.002
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 198 IGAPMPGNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
IG +II V+ VG + +D LI + K + A GV
Sbjct: 10 IGGHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGV 54
Score = 26.7 bits (59), Expect = 1.1
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMSV 228
++ A + G + EVK KVG ++ + +++V+
Sbjct: 46 DVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Escherichia coli [TaxId: 562]}
Length = 80
Score = 33.6 bits (77), Expect = 0.004
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 204 GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
+ K G V +++VL+ + K + ASADG+
Sbjct: 17 ATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGI 55
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 237
Score = 35.1 bits (79), Expect = 0.006
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVM 226
E+ + G I++ K G VK L +
Sbjct: 17 EVRPQVNGIILKRLFKEGSDVKAGQQLYQI 46
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Azotobacter vinelandii [TaxId:
354]}
Length = 79
Score = 30.9 bits (70), Expect = 0.026
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 204 GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGV 242
G + K G+ VK++++++ + K + A ADGV
Sbjct: 16 GTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGV 54
Score = 27.9 bits (62), Expect = 0.40
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 197 EIGAPMPGNIIEVKAKVGQQVKKNDVLIVMS 227
E+ A G I E+ G V ++L ++
Sbjct: 46 EVLAEADGVIAEIVKNEGDTVLSGELLGKLT 76
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide
acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 30.6 bits (69), Expect = 0.058
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 204 GNIIEVKAKVGQQVKKNDVLIVMSVMKTETLIHASADGVHK 244
G + + KVG+++ + D+L + K +G
Sbjct: 20 GTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLA 60
>d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 27.4 bits (61), Expect = 0.78
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 195 AGEIGAPM-PGNIIEVKAKVGQQVKKNDVLIVM 226
AG G P+ G E+ VGQ++++ + +
Sbjct: 33 AGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRV 65
>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc
{Mycoplasma capricolum [TaxId: 2095]}
Length = 154
Score = 27.8 bits (62), Expect = 0.96
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 202 MPGNIIEVKAKVGQQVKKNDVLIVM 226
+ GN E Q+V D L+ +
Sbjct: 86 LDGNGFESFVTQDQEVNAGDKLVTV 110
>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII)
{Escherichia coli [TaxId: 562]}
Length = 150
Score = 27.8 bits (62), Expect = 0.98
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 202 MPGNIIEVKAKVGQQVKKNDVLIVM 226
+ G + A+ GQ+VK D +I
Sbjct: 80 LKGEGFKRIAEEGQRVKVGDTVIEF 104
>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc
{Bacillus subtilis [TaxId: 1423]}
Length = 158
Score = 26.7 bits (59), Expect = 2.6
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 202 MPGNIIEVKAKVGQQVKKNDVLIVM 226
+ G G +V+ L+ +
Sbjct: 88 LKGEGFTSFVSEGDRVEPGQKLLEV 112
>d1n9ra_ b.38.1.1 (A:) Small nuclear ribonucleoprotein F, Smf
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 68
Score = 25.0 bits (55), Expect = 3.0
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 129 IGEEFSCEFKTGDTAYVTTL-SISERLN---DHGERTVFFLYNGQLRSVLIRDKN 179
+ + K T Y TL S N + E V + +G L + IR N
Sbjct: 5 VNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNN 59
>d2bb3a1 c.90.1.1 (A:1-195) Precorrin-6y methylase CbiE
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 195
Score = 26.3 bits (57), Expect = 3.4
Identities = 6/52 (11%), Positives = 19/52 (36%)
Query: 45 QLLIKAKDVMENADKIIFPKSVSAFFQGSIGEPYQGFPKKLQEKVLGSLKDH 96
Q +AK+++E A+ I + + +++ +++
Sbjct: 13 QTTERAKEIIERAEVIYGSRRALELAGVVDDSRARILRSFKGDEIRRIMEEG 64
>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 103
Score = 25.5 bits (56), Expect = 3.7
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 207 IEVKAKVGQQVKKNDVLIVM 226
I + K+G +V+K + L +
Sbjct: 48 IVLHKKIGDRVQKGEALATI 67
>d1xnxa_ a.123.1.1 (A:) Orphan nuclear receptor NR1I3 (CAR) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 232
Score = 26.6 bits (58), Expect = 3.7
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 84 KLQEKVLGSLKDHTLDRKPECD 105
+LQE++ L +H ++++
Sbjct: 180 QLQEEMALILNNHIMEQQSRLQ 201
>d1xvpb_ a.123.1.1 (B:) Orphan nuclear receptor NR1I3 (CAR) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 246
Score = 25.4 bits (55), Expect = 7.2
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 83 KKLQEKVLGSLKDHTLDRKPECD 105
+LQE++ +L+ + ++
Sbjct: 180 DQLQEEMALTLQSYIKGQQRRPR 202
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.397
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,016,966
Number of extensions: 46152
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 32
Length of query: 288
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,254,276
Effective search space: 255872304
Effective search space used: 255872304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)