Query psy281
Match_columns 162
No_of_seqs 143 out of 1039
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 17:29:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ux2_A MIP18 family protein FA 100.0 1.5E-33 5.1E-38 213.5 4.9 119 38-156 9-130 (130)
2 1uwd_A Hypothetical protein TM 99.9 9.7E-25 3.3E-29 157.9 9.8 92 36-136 5-96 (103)
3 3lno_A Putative uncharacterize 99.9 3E-25 1E-29 162.3 7.1 93 36-136 7-99 (108)
4 3cq1_A Putative uncharacterize 99.9 7.1E-24 2.4E-28 153.5 6.4 89 38-136 7-95 (103)
5 1xhj_A Nitrogen fixation prote 95.3 0.12 4.1E-06 36.0 8.2 72 39-118 9-81 (88)
6 1veh_A NIFU-like protein hirip 91.3 0.28 9.5E-06 34.4 4.5 70 39-115 15-85 (92)
7 3dxs_X Copper-transporting ATP 90.2 0.35 1.2E-05 30.2 4.0 62 80-147 4-65 (74)
8 2z51_A NIFU-like protein 2, ch 89.6 0.49 1.7E-05 36.0 5.0 71 37-115 4-75 (154)
9 2z51_A NIFU-like protein 2, ch 89.3 1.1 3.6E-05 34.1 6.6 70 36-115 84-153 (154)
10 4a4j_A Pacszia, cation-transpo 88.1 0.73 2.5E-05 28.2 4.3 61 80-147 4-64 (69)
11 3cjk_B Copper-transporting ATP 87.6 1.1 3.7E-05 27.5 4.9 62 80-147 4-65 (75)
12 1th5_A NIFU1; iron-sulfur clus 87.1 0.5 1.7E-05 31.8 3.1 68 37-114 4-71 (74)
13 1osd_A MERP, hypothetical prot 86.9 1.1 3.9E-05 26.9 4.6 62 80-147 5-66 (72)
14 2l3m_A Copper-ION-binding prot 86.7 1.4 4.9E-05 26.4 5.0 63 78-146 5-67 (71)
15 2qif_A Copper chaperone COPZ; 86.0 1.3 4.3E-05 25.9 4.4 60 81-146 5-64 (69)
16 1cpz_A Protein (COPZ); copper 85.1 1.3 4.6E-05 26.1 4.2 60 82-147 4-63 (68)
17 1kvi_A Copper-transporting ATP 84.5 1.5 5.1E-05 27.2 4.4 64 78-147 8-71 (79)
18 1yg0_A COP associated protein; 83.5 1.5 5.2E-05 25.7 3.9 59 81-146 4-62 (66)
19 2xmw_A PACS-N, cation-transpor 82.3 1.7 5.9E-05 25.8 3.9 59 81-146 6-64 (71)
20 1aw0_A Menkes copper-transport 81.3 1.4 4.9E-05 26.4 3.2 61 80-146 5-65 (72)
21 2kt2_A Mercuric reductase; nme 79.4 2 7E-05 25.6 3.5 59 82-147 4-62 (69)
22 1q8l_A Copper-transporting ATP 79.1 1.7 5.9E-05 27.6 3.2 65 77-147 8-72 (84)
23 2ew9_A Copper-transporting ATP 78.9 2.3 8E-05 29.6 4.1 63 79-147 81-143 (149)
24 3iwl_A Copper transport protei 78.9 3.1 0.00011 25.5 4.3 57 80-147 4-60 (68)
25 1yjr_A Copper-transporting ATP 78.9 1.4 4.9E-05 26.6 2.6 60 81-146 7-66 (75)
26 1opz_A Potential copper-transp 78.5 2.7 9.3E-05 25.2 3.9 62 79-146 7-68 (76)
27 2ofg_X Zinc-transporting ATPas 77.8 3.1 0.0001 28.5 4.4 64 78-147 8-71 (111)
28 2g9o_A Copper-transporting ATP 76.8 2 7E-05 28.1 3.1 60 80-145 5-64 (90)
29 2ldi_A Zinc-transporting ATPas 75.7 1.7 5.7E-05 25.7 2.2 60 81-146 6-65 (71)
30 1fvq_A Copper-transporting ATP 73.3 2.9 9.8E-05 25.0 2.9 60 80-146 4-63 (72)
31 1cc8_A Protein (metallochapero 73.2 7.7 0.00026 23.8 5.1 57 81-147 8-65 (73)
32 1p6t_A Potential copper-transp 72.5 2.7 9.2E-05 29.4 3.0 62 80-147 76-137 (151)
33 1y3j_A Copper-transporting ATP 72.0 1.5 5.2E-05 27.0 1.4 62 80-147 5-66 (77)
34 1jww_A Potential copper-transp 71.3 2.2 7.7E-05 26.1 2.1 61 80-146 5-65 (80)
35 3fry_A Probable copper-exporti 71.2 3.7 0.00013 25.5 3.2 59 78-147 5-63 (73)
36 2kkh_A Putative heavy metal tr 70.3 5.9 0.0002 25.7 4.2 64 78-147 16-79 (95)
37 2roe_A Heavy metal binding pro 69.5 4.2 0.00014 24.2 3.0 57 82-147 4-60 (66)
38 2rop_A Copper-transporting ATP 67.7 6.5 0.00022 29.4 4.4 64 78-147 122-185 (202)
39 2xmm_A SSR2857 protein, ATX1; 67.4 4.5 0.00015 23.3 2.8 34 81-118 4-37 (64)
40 2k2p_A Uncharacterized protein 65.5 5.7 0.00019 25.9 3.3 37 78-118 22-58 (85)
41 2crl_A Copper chaperone for su 60.9 9.3 0.00032 25.5 3.8 60 78-147 19-78 (98)
42 2ew9_A Copper-transporting ATP 60.8 8.9 0.0003 26.4 3.8 59 81-145 7-65 (149)
43 1mwy_A ZNTA; open-faced beta-s 58.8 15 0.00053 21.9 4.3 59 80-146 5-63 (73)
44 2zzt_A Putative uncharacterize 46.3 66 0.0023 21.8 8.5 70 39-119 12-84 (107)
45 2aj0_A Probable cadmium-transp 45.9 36 0.0012 20.0 4.5 34 81-118 6-39 (71)
46 3m9j_A Thioredoxin; oxidoreduc 45.4 40 0.0014 21.2 4.9 38 80-118 23-60 (105)
47 2kyz_A Heavy metal binding pro 43.5 15 0.00052 21.6 2.4 33 81-118 4-36 (67)
48 4euy_A Uncharacterized protein 43.0 46 0.0016 21.3 4.9 38 80-118 21-58 (105)
49 2e0q_A Thioredoxin; electron t 41.2 60 0.0021 20.0 5.2 38 80-118 19-56 (104)
50 1zzo_A RV1677; thioredoxin fol 40.8 67 0.0023 20.9 5.6 35 82-117 30-64 (136)
51 1qup_A Superoxide dismutase 1 40.4 35 0.0012 26.7 4.5 59 79-147 7-65 (222)
52 2dyj_A Ribosome-binding factor 40.2 84 0.0029 21.2 6.5 41 39-86 13-53 (95)
53 1syr_A Thioredoxin; SGPP, stru 39.5 56 0.0019 21.2 5.0 36 82-118 31-66 (112)
54 1jk9_B CCS, copper chaperone f 39.4 43 0.0015 26.7 5.0 60 78-147 7-66 (249)
55 1lu4_A Soluble secreted antige 39.2 65 0.0022 21.0 5.3 35 83-118 30-64 (136)
56 2vim_A Thioredoxin, TRX; thior 39.1 60 0.002 20.2 4.9 36 82-118 24-59 (104)
57 3f3q_A Thioredoxin-1; His TAG, 39.1 57 0.0019 21.2 4.9 36 82-118 29-64 (109)
58 3j09_A COPA, copper-exporting 38.4 22 0.00076 32.5 3.5 62 80-147 4-65 (723)
59 2rop_A Copper-transporting ATP 37.8 23 0.00079 26.2 3.0 60 80-145 22-81 (202)
60 1ghh_A DINI, DNA-damage-induci 36.6 95 0.0033 20.8 6.2 50 90-144 16-69 (81)
61 2pu9_C TRX-F, thioredoxin F-ty 36.1 68 0.0023 20.5 4.9 37 81-118 28-64 (111)
62 2oe3_A Thioredoxin-3; electron 35.5 54 0.0019 21.7 4.4 36 82-118 35-70 (114)
63 3qfa_C Thioredoxin; protein-pr 35.1 62 0.0021 21.3 4.7 35 83-118 37-71 (116)
64 2vlu_A Thioredoxin, thioredoxi 34.8 72 0.0025 20.8 4.9 36 82-118 39-74 (122)
65 1gh2_A Thioredoxin-like protei 34.7 73 0.0025 20.2 4.9 38 80-118 24-61 (107)
66 3die_A Thioredoxin, TRX; elect 33.4 73 0.0025 19.9 4.7 36 81-117 23-59 (106)
67 3gnj_A Thioredoxin domain prot 33.0 80 0.0028 19.9 4.9 37 81-118 26-63 (111)
68 1xfl_A Thioredoxin H1; AT3G510 33.0 77 0.0026 21.2 4.9 38 80-118 41-78 (124)
69 2fgx_A Putative thioredoxin; N 32.5 59 0.002 22.5 4.2 36 81-118 32-67 (107)
70 3zxw_B Ribulose bisphosphate c 32.3 85 0.0029 22.6 5.1 48 92-143 21-74 (118)
71 1faa_A Thioredoxin F; electron 32.3 83 0.0028 20.6 4.9 36 82-118 42-77 (124)
72 2vm1_A Thioredoxin, thioredoxi 31.3 1E+02 0.0035 19.6 5.2 38 80-118 31-68 (118)
73 3d22_A TRXH4, thioredoxin H-ty 29.2 96 0.0033 20.8 4.9 37 81-118 50-86 (139)
74 2f51_A Thioredoxin; electron t 29.1 1E+02 0.0034 20.3 4.9 37 81-118 27-63 (118)
75 1ti3_A Thioredoxin H, PTTRXH1; 28.8 1.1E+02 0.0038 19.2 5.4 37 80-117 29-65 (113)
76 1z6m_A Conserved hypothetical 28.5 93 0.0032 21.9 5.0 39 76-118 27-67 (175)
77 1xwb_A Thioredoxin; dimerizati 28.4 1.1E+02 0.0037 19.0 4.9 36 81-117 24-60 (106)
78 3zzx_A Thioredoxin; oxidoreduc 27.6 1.1E+02 0.0038 20.2 4.9 38 80-118 23-60 (105)
79 1fb6_A Thioredoxin M; electron 27.3 1.1E+02 0.0039 18.9 4.9 36 81-117 22-58 (105)
80 3byp_A CZRB protein; membrane 27.0 1.3E+02 0.0044 19.3 7.6 70 39-118 12-84 (94)
81 1rbl_M Ribulose 1,5 bisphospha 26.9 1.1E+02 0.0039 21.6 5.0 48 92-143 22-75 (109)
82 1ego_A Glutaredoxin; electron 26.8 76 0.0026 19.3 3.7 34 84-118 6-39 (85)
83 2wz9_A Glutaredoxin-3; protein 26.7 1.1E+02 0.0037 21.2 4.9 36 82-118 37-72 (153)
84 2yzu_A Thioredoxin; redox prot 26.7 1.2E+02 0.004 18.8 4.8 36 81-117 22-58 (109)
85 3j20_C 30S ribosomal protein S 26.4 47 0.0016 26.2 3.1 85 64-155 30-117 (210)
86 3evi_A Phosducin-like protein 25.8 1E+02 0.0035 21.1 4.6 40 79-119 25-64 (118)
87 2l6c_A Thioredoxin; oxidoreduc 25.8 1.1E+02 0.0036 19.8 4.5 37 81-118 23-59 (110)
88 1ep7_A Thioredoxin CH1, H-type 25.6 1.3E+02 0.0044 18.9 5.2 36 81-117 28-64 (112)
89 1nsw_A Thioredoxin, TRX; therm 25.5 1.3E+02 0.0043 18.7 4.9 36 81-117 21-57 (105)
90 3erw_A Sporulation thiol-disul 25.3 1.5E+02 0.005 19.4 5.3 36 81-117 38-75 (145)
91 1r26_A Thioredoxin; redox-acti 25.2 1E+02 0.0034 20.8 4.4 37 81-118 41-77 (125)
92 2dbc_A PDCL2, unnamed protein 24.6 1.2E+02 0.0043 20.5 4.9 38 80-118 33-70 (135)
93 1v58_A Thiol:disulfide interch 23.6 84 0.0029 24.1 4.1 95 13-118 39-133 (241)
94 3tco_A Thioredoxin (TRXA-1); d 23.0 1.4E+02 0.0049 18.5 4.9 36 81-117 25-61 (109)
95 2i4a_A Thioredoxin; acidophIle 22.3 1.2E+02 0.0041 18.8 4.1 37 80-117 23-60 (107)
96 2j23_A Thioredoxin; immune pro 21.9 78 0.0027 20.9 3.2 36 82-118 38-75 (121)
97 2xc2_A Thioredoxinn; oxidoredu 21.5 1.4E+02 0.0049 19.1 4.5 36 81-118 37-72 (117)
98 1dhn_A DHNA, 7,8-dihydroneopte 21.4 1.4E+02 0.0049 20.7 4.7 33 86-118 67-99 (121)
99 3o6p_A Peptide ABC transporter 21.2 1.2E+02 0.0042 22.4 4.5 38 77-118 98-136 (229)
100 1fo5_A Thioredoxin; disulfide 20.6 79 0.0027 18.9 2.8 36 82-118 7-43 (85)
101 3o2e_A BOLA-like protein; ssgc 20.6 1.6E+02 0.0056 20.5 4.7 88 29-132 15-103 (105)
102 2f9s_A Thiol-disulfide oxidore 20.5 1.5E+02 0.0051 19.9 4.6 35 82-117 31-67 (151)
103 3hz4_A Thioredoxin; NYSGXRC, P 20.5 1.2E+02 0.0042 20.5 4.1 37 81-118 28-65 (140)
104 2kvk_A Actin severing and dyna 20.3 2.4E+02 0.0081 20.0 6.8 39 78-118 79-119 (144)
105 3gha_A Disulfide bond formatio 20.2 1.8E+02 0.0062 21.5 5.3 42 76-118 29-70 (202)
No 1
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=99.98 E-value=1.5e-33 Score=213.54 Aligned_cols=119 Identities=55% Similarity=0.858 Sum_probs=105.1
Q ss_pred CHHHHHHHhccCCCCCCCCCceeecceeeeeeee---eCCCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEE
Q psy281 38 DSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQV---NNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVV 114 (162)
Q Consensus 38 t~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~---~d~~~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~ 114 (162)
+.++||++|++|+|||+|.+|++||+||++.|++ .++++.|.|.||||+|+||++..|..+|+.+|.+.+|+..+|+
T Consensus 9 ~~~eI~d~L~~I~DPEiPvtl~dLGvV~~v~I~v~~~~~~~~~V~V~~TPT~p~Cp~a~~I~l~Ir~kL~~~lp~~~kV~ 88 (130)
T 3ux2_A 9 KALEVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLE 88 (130)
T ss_dssp HHHHHHHHHTTCBCSSSSSBTTTTTSCCGGGEEEEEEETTEEEEEECCCCCCCSSCHHHHHHHHHHHHHHHHCSSCCCCC
T ss_pred cHHHHHHHHhcCCCCCCCCCHHHCCeeeecceEeecccCCCCeEEEEEEeCCCCCCchHHHHHHHHHHHHHhCCCceEEE
Confidence 4789999999999999999999999999988842 2335689999999999999999999999999988899999999
Q ss_pred EEEecCCCCCchhchhhcCCHHHHHHhccccchHHHHhhhcc
Q psy281 115 VEITPGSHSTEFAINKQLADKERVAAALENSTLIGVINQCIS 156 (162)
Q Consensus 115 V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~~~~~~~~~~ 156 (162)
|++..++|..+.+.|||++|||||+|||||.+|+.+|++|+.
T Consensus 89 v~I~pgtH~~e~~vnKQl~DKERvaAAlEn~~l~~~v~~c~~ 130 (130)
T 3ux2_A 89 IYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCVL 130 (130)
T ss_dssp CCCCCC------CHHHHHHCHHHHHHHHHSHHHHHHHHHHHC
T ss_pred EEECCCCCcCHHHHHHhhhhHHHHHHHhcCHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999973
No 2
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=99.91 E-value=9.7e-25 Score=157.91 Aligned_cols=92 Identities=23% Similarity=0.305 Sum_probs=87.0
Q ss_pred cCCHHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEE
Q psy281 36 EFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVV 115 (162)
Q Consensus 36 ~~t~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V 115 (162)
|+++++|+++|++|+|||+++|||+||+|++|.+ +++++|+|.|++|+++||+...|+.+|+++| ++++|+.+|+|
T Consensus 5 m~~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v---~~~~~V~v~l~lt~~~cp~~~~l~~~i~~al-~~l~gv~~v~V 80 (103)
T 1uwd_A 5 KVTKEDVLNALKNVIDFELGLDVVSLGLVYDIQI---DDQNNVKVLMTMTTPMCPLAGMILSDAEEAI-KKIEGVNNVEV 80 (103)
T ss_dssp CCCHHHHHHHHTTCBCTTTSSBTTTTTCCCCEEE---CTTCEEEEEECCSSSCCSSHHHHHHHHHHHH-HTSSSCCEEEE
T ss_pred cchHHHHHHHHcCCCCCCCCcChhhcCCeeEEEE---cCCCEEEEEEEECCCCCcHHHHHHHHHHHHH-HhCCCcceEEE
Confidence 5789999999999999999999999999999999 3347999999999999999999999999999 78999999999
Q ss_pred EEecCCCCCchhchhhcCCHH
Q psy281 116 EITPGSHSTEFAINKQLADKE 136 (162)
Q Consensus 116 ~i~~~~h~~~~~w~~~l~~~E 136 (162)
+++ +.++|+++++++|
T Consensus 81 ~l~-----~~p~W~~~~~s~~ 96 (103)
T 1uwd_A 81 ELT-----FDPPWTPERMSPE 96 (103)
T ss_dssp EEC-----CSSCCCGGGSCHH
T ss_pred EEe-----cCCCCChHHCCHH
Confidence 999 9999999999986
No 3
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=99.91 E-value=3e-25 Score=162.33 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=87.1
Q ss_pred cCCHHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEE
Q psy281 36 EFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVV 115 (162)
Q Consensus 36 ~~t~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V 115 (162)
+.++++|+++|++|+|||+|+|||+||+||+|.| +++++|+|.|+||+|+||+...|+.+|+++|+++++|+.+|+|
T Consensus 7 ~~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v---~~~~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V 83 (108)
T 3lno_A 7 EAFENKLYANLEAVIDPELGVDIVNLGLVYDVTA---DENNNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEV 83 (108)
T ss_dssp HHHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEE---CTTCCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEE
T ss_pred hhhHHHHHHHHcCCCCCCCCCCHHHcCCceEEEE---CCCCeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEE
Confidence 4578999999999999999999999999999999 3347999999999999999999999999999567999999999
Q ss_pred EEecCCCCCchhchhhcCCHH
Q psy281 116 EITPGSHSTEFAINKQLADKE 136 (162)
Q Consensus 116 ~i~~~~h~~~~~w~~~l~~~E 136 (162)
+++ |.|+|++++++++
T Consensus 84 ~l~-----~~p~W~~~~~s~~ 99 (108)
T 3lno_A 84 NVV-----WNPPWSKERMSRM 99 (108)
T ss_dssp EEC-----CSSCCCGGGSCHH
T ss_pred EEE-----ecCCCChHHCCHH
Confidence 999 9999999999986
No 4
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=99.89 E-value=7.1e-24 Score=153.50 Aligned_cols=89 Identities=25% Similarity=0.354 Sum_probs=84.4
Q ss_pred CHHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEE
Q psy281 38 DSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEI 117 (162)
Q Consensus 38 t~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i 117 (162)
++++|+++|++|+|||+++|||+||+|++|.+ + ++.|+|.|++|+++||+...|+.+|+++| ++++|+.+|+|++
T Consensus 7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v--~--~~~V~v~l~lt~~~cp~~~~l~~~i~~al-~~l~gv~~V~V~l 81 (103)
T 3cq1_A 7 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVV--E--PPRAYVRMTLTTPGCPLHDSLGEAVRQAL-SRLPGVEEVEVEV 81 (103)
T ss_dssp HHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEE--E--TTEEEEEECCSSSSCCSSCHHHHHHHHHH-HTSTTCCEEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCcCchhcCceEEEEE--E--CCEEEEEEEECCCCCcHHHHHHHHHHHHH-HhCCCceeEEEEE
Confidence 58899999999999999999999999999999 3 46999999999999999999999999999 7899999999999
Q ss_pred ecCCCCCchhchhhcCCHH
Q psy281 118 TPGSHSTEFAINKQLADKE 136 (162)
Q Consensus 118 ~~~~h~~~~~w~~~l~~~E 136 (162)
+ +.++|+++++++|
T Consensus 82 ~-----~~p~W~~~~~s~~ 95 (103)
T 3cq1_A 82 T-----FEPPWTLARLSEK 95 (103)
T ss_dssp C-----CSSCCCGGGCCSG
T ss_pred e-----cCCCCChHHCCHH
Confidence 9 9999999999985
No 5
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=95.28 E-value=0.12 Score=36.02 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=51.9
Q ss_pred HHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchHH-HHHHHHHHHHHHhCCCceeEEEEE
Q psy281 39 SREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMAT-LIGLSIRVRLIRALPARFKVVVEI 117 (162)
Q Consensus 39 ~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~~-~I~~~I~~aL~~~lpgv~~V~V~i 117 (162)
.+.|.++|.+ .-|-+-. +=|=|.=+++ + ++.|+|.|.=.+.+||+.. .++..|++.|++.+|++..|....
T Consensus 9 ~~~I~~~L~~-IRP~L~~---dGGdvelv~v---~-~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~v~ 80 (88)
T 1xhj_A 9 FDQVAEVIER-LRPFLLR---DGGDCTLVDV---E-DGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVF 80 (88)
T ss_dssp HHHHHHHHHH-HHHHHHH---HSCEEEEEEC---C-SSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEEE
T ss_pred HHHHHHHHHH-hcHHHHh---cCCeEEEEEE---E-CCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEecc
Confidence 5666666665 4454432 2343444555 3 5899999999999999965 588899999988999998877655
Q ss_pred e
Q psy281 118 T 118 (162)
Q Consensus 118 ~ 118 (162)
.
T Consensus 81 ~ 81 (88)
T 1xhj_A 81 L 81 (88)
T ss_dssp C
T ss_pred c
Confidence 4
No 6
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=91.29 E-value=0.28 Score=34.36 Aligned_cols=70 Identities=13% Similarity=0.078 Sum_probs=48.6
Q ss_pred HHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchHH-HHHHHHHHHHHHhCCCceeEEE
Q psy281 39 SREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMAT-LIGLSIRVRLIRALPARFKVVV 115 (162)
Q Consensus 39 ~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~~-~I~~~I~~aL~~~lpgv~~V~V 115 (162)
.+.|.+.|.+-.-|-+.. +=|=|.=+.+ + ++.|+|.|.=.+.+||+.. .++..|++.|++.+|++..|..
T Consensus 15 ~~~I~~~L~~~IRP~L~~---dGGdvelv~v--~--~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~V~~ 85 (92)
T 1veh_A 15 VAMIKELLDTRIRPTVQE---DGGDVIYRGF--E--DGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQ 85 (92)
T ss_dssp HHHHHHHHHHTTHHHHHH---HSCCCCEEEE--E--TTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEE
T ss_pred HHHHHHHHHHHhhHHHHh---cCCeEEEEEE--e--CCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCEEEE
Confidence 556667776544454422 1233444445 3 4788888888899999965 4788999999888999887754
No 7
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=90.22 E-value=0.35 Score=30.23 Aligned_cols=62 Identities=16% Similarity=0.307 Sum_probs=42.1
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy281 80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL 147 (162)
Q Consensus 80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~ 147 (162)
+.+.+....|+.. ...|+.+| +.++|+..+.|++.. +.-.-.|++...+.+.+..+++..++
T Consensus 4 ~~~~v~gm~C~~C---~~~ie~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~Gy 65 (74)
T 3dxs_X 4 IQVGVTGMTCAAC---SNSVEAAL-MNVNGVFKASVALLQ--NRADVVFDPNLVKEEDIKEEIEDAGF 65 (74)
T ss_dssp EEEEEECCCSHHH---HHHHHHHH-HTSTTEEEEEEEGGG--TEEEEEECTTTCCHHHHHHHHHHHTC
T ss_pred EEEEECCcCCHHH---HHHHHHHH-hcCCCEEEEEEEecC--CEEEEEECCCCCCHHHHHHHHHHCCC
Confidence 4556667778654 35788888 789999999998762 11222455555677788888776553
No 8
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=89.60 E-value=0.49 Score=35.99 Aligned_cols=71 Identities=17% Similarity=0.258 Sum_probs=50.3
Q ss_pred CCHHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchH-HHHHHHHHHHHHHhCCCceeEEE
Q psy281 37 FDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMA-TLIGLSIRVRLIRALPARFKVVV 115 (162)
Q Consensus 37 ~t~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~-~~I~~~I~~aL~~~lpgv~~V~V 115 (162)
++.++|.++|.. .-|-+..+ =|=|.=+++ + ++.|+|.|.=.+.+||.. ..++..|++.|++.+|++..|..
T Consensus 4 ~~~e~v~~~L~~-iRP~l~~d---GGdvelv~v--~--~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpev~~V~~ 75 (154)
T 2z51_A 4 LTEENVESVLDE-IRPYLMSD---GGNVALHEI--D--GNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEA 75 (154)
T ss_dssp SCHHHHHHHHHH-HHHHHHHT---TEEEEEEEE--E--TTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred chHHHHHHHHHH-hChHHHhc---CCeEEEEEE--E--CCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCCceEEEE
Confidence 467777777765 34544332 233444455 3 479999999999999995 45888999999889999876654
No 9
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=89.30 E-value=1.1 Score=34.13 Aligned_cols=70 Identities=19% Similarity=0.236 Sum_probs=50.5
Q ss_pred cCCHHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEE
Q psy281 36 EFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVV 115 (162)
Q Consensus 36 ~~t~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V 115 (162)
.++++.|-++|.++ -|-+..+ +=|=|.-++| + ++.|+|.|+=.+.+| ..++..|+++|++.+|++.+|..
T Consensus 84 ~L~~~~v~~~L~~i-RP~L~~~--dGGdvelv~v--~--~~~v~v~l~Gac~~~---~Tlk~~Ie~~l~e~vP~i~~V~~ 153 (154)
T 2z51_A 84 ELNEENIEKVLEEI-RPYLIGT--ADGSLDLVEI--E--DPIVKIRITGPAAGV---MTVRVAVTQKLREKIPSIAAVQL 153 (154)
T ss_dssp CSSHHHHHHHHHHH-GGGCCGG--GCCEEEEEEE--E--TTEEEEEEESGGGGC---HHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHHHHHHHH-HHHhhhc--CCCCeEEEEE--E--CCEEEEEEecCCccc---HhHHHHHHHHHHHHCCCccEEEe
Confidence 56788888888874 3665421 2345555667 3 578998888665555 67888999999999999988753
No 10
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=88.13 E-value=0.73 Score=28.20 Aligned_cols=61 Identities=13% Similarity=0.165 Sum_probs=40.4
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy281 80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL 147 (162)
Q Consensus 80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~ 147 (162)
+.+.+....|+.. ...|+.+| +.++|+..+.|++.. ..-.-.| +...+.+.+..+++..++
T Consensus 4 ~~~~v~gm~C~~C---~~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~-~~~~~~~~i~~~i~~~Gy 64 (69)
T 4a4j_A 4 INLQLEGMDCTSC---ASSIERAI-AKVPGVQSCQVNFAL--EQAVVSY-HGETTPQILTDAVERAGY 64 (69)
T ss_dssp EEEEEESCCSHHH---HHHHHHHH-HTSTTEEEEEEETTT--TEEEEEE-CTTCCHHHHHHHHHHTTC
T ss_pred EEEEECCeecHHH---HHHHHHHH-hcCCCeEEEEEEecC--CEEEEEE-CCCCCHHHHHHHHHHcCC
Confidence 4556667778654 35678888 789999999998762 1112234 455677788888776553
No 11
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=87.61 E-value=1.1 Score=27.46 Aligned_cols=62 Identities=10% Similarity=0.230 Sum_probs=39.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy281 80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL 147 (162)
Q Consensus 80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~ 147 (162)
+.+.+....|+... ..|+.+| ..++|+..+.+++.. ....-.|++...+.+.+..+++..++
T Consensus 4 ~~~~v~gm~C~~C~---~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~Gy 65 (75)
T 3cjk_B 4 VTISVEGMTCNSCV---WTIEQQI-GKVNGVHHIKVSLEE--KNATIIYDPKLQTPKTLQEAIDDMGF 65 (75)
T ss_dssp EEEEECCCCSHHHH---HHHHHHH-HTSTTEEEEEEETTT--TEEEEEECTTTCCHHHHHHHHHHTTC
T ss_pred EEEEECCccCHHHH---HHHHHHH-hcCCCeEEEEEEecC--CEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 45666778886543 4578888 789999999888752 22222445555566667766665543
No 12
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=87.11 E-value=0.5 Score=31.76 Aligned_cols=68 Identities=13% Similarity=0.155 Sum_probs=47.4
Q ss_pred CCHHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEE
Q psy281 37 FDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVV 114 (162)
Q Consensus 37 ~t~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~ 114 (162)
++.+.|.++|.+ .-|-+..+= =|=|.=+++ + ++.|+|.|.=.+.+| ..++..|+++|++.+|++..|.
T Consensus 4 ~~~~~V~~~L~~-iRP~L~~dG--GGdvelv~v--~--~g~V~v~l~GaC~gc---~Tlk~gIe~~L~~~vpei~~V~ 71 (74)
T 1th5_A 4 LNEENVEKVLNE-IRPYLAGTG--GGGLQFLMI--K--GPIVKVRLTGPAAVV---RTVRIAVSKKLREKIPSIQIVQ 71 (74)
T ss_dssp CSHHHHHHHHTT-THHHHTTTT--CCCCCCCEE--E--TTEEEECCCSSSSSS---SSHHHHHHHHHHHHCTTCSEEE
T ss_pred HHHHHHHHHHHH-HhHHHHhcC--CCcEEEEEE--e--CCEEEEEEecCCcch---HHHHHHHHHHHHHHCCCCcEEE
Confidence 467888888887 666555432 022333445 2 478888887777777 6888899999988899987765
No 13
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=86.87 E-value=1.1 Score=26.88 Aligned_cols=62 Identities=11% Similarity=0.205 Sum_probs=39.1
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy281 80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL 147 (162)
Q Consensus 80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~ 147 (162)
+.+.+....|+... ..|+.+| ..++|+..+.+++.. ..-.-.|++...+.+.+..+++..++
T Consensus 5 ~~~~v~gm~C~~C~---~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~G~ 66 (72)
T 1osd_A 5 VTLSVPGMTCSACP---ITVKKAI-SKVEGVSKVDVTFET--RQAVVTFDDAKTSVQKLTKATADAGY 66 (72)
T ss_dssp EEEECTTCCSTTHH---HHHHHHH-HTSTTEEEEEEETTT--TEEEEEEETTTCCHHHHHHHHHHTTC
T ss_pred EEEEECCeEcHHHH---HHHHHHH-hcCCCeEEEEEEecC--CEEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45666677776543 3477888 789999999888752 21222445545566666666665543
No 14
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=86.69 E-value=1.4 Score=26.38 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=39.8
Q ss_pred EEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccc
Q psy281 78 IKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENST 146 (162)
Q Consensus 78 V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~ 146 (162)
-++.+.+....|+... ..|+.+| ..++|+..+.|++.. ..-.-.|.+...+.+.+..+++..+
T Consensus 5 ~~~~~~v~gm~C~~C~---~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~G 67 (71)
T 2l3m_A 5 EQLTLQVEGMSCGHCV---NAIESSV-KELNGVEQVKVQLAE--GTVEVTIDSSVVTLKDIVAVIEDQG 67 (71)
T ss_dssp EEEEEEEECCCSHHHH---HHHHHHH-HTSTTEEEEEEETTT--TEEEEEEETTTSCHHHHHHHHHHTT
T ss_pred EEEEEEECCccCHHHH---HHHHHHH-HcCCCeEEEEEEecC--CEEEEEECCCCCCHHHHHHHHHHcC
Confidence 4556677778886543 4477888 789999998888752 1122234444556666666665544
No 15
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=85.96 E-value=1.3 Score=25.91 Aligned_cols=60 Identities=12% Similarity=0.191 Sum_probs=36.9
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccc
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENST 146 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~ 146 (162)
.+.+....|+... ..++.+| ..++|+..+.+++.. ..-.-.|.+...+.+.+..+++..+
T Consensus 5 ~~~v~gm~C~~c~---~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~G 64 (69)
T 2qif_A 5 TLQVEGMSCQHCV---KAVETSV-GELDGVSAVHVNLEA--GKVDVSFDADKVSVKDIADAIEDQG 64 (69)
T ss_dssp EEEEECCCSHHHH---HHHHHHH-HTSTTEEEEEEETTT--TEEEEEECTTTCCHHHHHHHHHHTT
T ss_pred EEEECCcccHHHH---HHHHHHH-hcCCCeeEEEEEecC--CEEEEEECCCCCCHHHHHHHHHHcC
Confidence 4555667776543 4478888 789999988887652 1122234554556666666665544
No 16
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=85.11 E-value=1.3 Score=26.11 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=36.7
Q ss_pred EEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy281 82 FTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL 147 (162)
Q Consensus 82 ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~ 147 (162)
+.+....|+... ..++.+| +.++|+..+.+++.. ..-.-.+++...+.+.+..+++..++
T Consensus 4 ~~v~gm~C~~C~---~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~G~ 63 (68)
T 1cpz_A 4 FSVKGMSCNHCV---ARIEEAV-GRISGVKKVKVQLKK--EKAVVKFDEANVQATEICQAINELGY 63 (68)
T ss_dssp EEESCCCSSSHH---HHHHHHH-HTSTTEEEEEEETTT--TEEEEEECTTTCCHHHHHHHHHTTSS
T ss_pred EEECCeeCHHHH---HHHHHHH-HcCCCeEEEEEEecC--CEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 445566676543 3477888 789999999888752 11222344444566667776665543
No 17
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=84.47 E-value=1.5 Score=27.17 Aligned_cols=64 Identities=9% Similarity=0.209 Sum_probs=39.2
Q ss_pred EEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy281 78 IKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL 147 (162)
Q Consensus 78 V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~ 147 (162)
-++.+.+....|+... ..|+.+| ..++|+..+.|++.. ....-.|.+...+.+.+..+++..++
T Consensus 8 ~~~~~~v~gm~C~~C~---~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~Gy 71 (79)
T 1kvi_A 8 NSVTISVEGMTCNSCV---WTIEQQI-GKVNGVHHIKVSLEE--KNATIIYDPKLQTPKTLQEAIDDMGF 71 (79)
T ss_dssp EEEEEEECCCCSTTTH---HHHHHHH-HHSSSCCCEEEEGGG--TEEEEEECTTTCCHHHHHHHHHHHCC
T ss_pred EEEEEEECCccCHHHH---HHHHHHH-hcCCCeEEEEEEccC--CEEEEEECCCCCCHHHHHHHHHHCCC
Confidence 4455566666665432 3477888 789999999998763 11222344444566667776665543
No 18
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=83.46 E-value=1.5 Score=25.72 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=36.2
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccc
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENST 146 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~ 146 (162)
.+.+....|+.. ...|+.+| ..++|+..+.+++.. +.-.-.+.+.. +.+.+..+++..+
T Consensus 4 ~~~v~gm~C~~C---~~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~~-~~~~i~~~i~~~G 62 (66)
T 1yg0_A 4 TFQVPSITCNHC---VDKIEKFV-GEIEGVSFIDVSVEK--KSVVVEFDAPA-TQDLIKEALLDAG 62 (66)
T ss_dssp EECCTTCSCSHH---HHHHHHHH-TTSSSEEEEEEETTT--TEEEEEECTTC-CHHHHHHHHHHHT
T ss_pred EEEECCcccHHH---HHHHHHHH-hcCCCceEEEEEcCC--CEEEEEECCCC-CHHHHHHHHHHcC
Confidence 455666778654 34578888 789999998888752 11122344433 5566666665544
No 19
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=82.32 E-value=1.7 Score=25.85 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=34.4
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccc
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENST 146 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~ 146 (162)
.+.+....|+.. ...|+.+| ..++|+..+.+++.. ..-.-.|+.. .+.+.+..+++..+
T Consensus 6 ~~~v~gm~C~~C---~~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~-~~~~~i~~~i~~~G 64 (71)
T 2xmw_A 6 NLQLEGMRCAAC---ASSIERAI-AKVPGVQSCQVNFAL--EQAVVSYHGE-TTPQILTDAVERAG 64 (71)
T ss_dssp EEEEECCCSHHH---HHHHHHHH-HTSTTEEEEEEETTT--TEEEEEEC----CHHHHHHHHHHHT
T ss_pred EEEECCcccHHH---HHHHHHHH-hcCCCeEEEEEEccC--CEEEEEECCC-CCHHHHHHHHHHcC
Confidence 445556777654 34578888 789999999988752 2112233333 45556666665443
No 20
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=81.26 E-value=1.4 Score=26.40 Aligned_cols=61 Identities=15% Similarity=0.136 Sum_probs=37.7
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccc
Q psy281 80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENST 146 (162)
Q Consensus 80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~ 146 (162)
+.+.+....|+.. ...|+.+| ..++|+..+.+++.. ..-.-.|.+...+.+.+..+++..+
T Consensus 5 ~~~~v~gm~C~~C---~~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~G 65 (72)
T 1aw0_A 5 TVINIDGMTCNSC---VQSIEGVI-SKKPGVKSIRVSLAN--SNGTVEYDPLLTSPETLRGAIEDMG 65 (72)
T ss_dssp EEEEEECCCHHHH---HHHHHHHH-HTSTTCCCEEEETTT--TEEEEEECTTTCCHHHHHHHHHHHT
T ss_pred EEEEECCeecHHH---HHHHHHHH-hcCCCeEEEEEEccC--CEEEEEECCCcCCHHHHHHHHHHCC
Confidence 3455566777554 34578888 789999999998752 2122234444455666666665544
No 21
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=79.37 E-value=2 Score=25.59 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=36.8
Q ss_pred EEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy281 82 FTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL 147 (162)
Q Consensus 82 ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~ 147 (162)
+.+....|+.. ...|+.+| +.++|+..+.|++.. +.-.-.+++. .+.+.+..+++..++
T Consensus 4 ~~v~gm~C~~C---~~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~-~~~~~i~~~i~~~Gy 62 (69)
T 2kt2_A 4 LKITGMTCDSC---AAHVKEAL-EKVPGVQSALVSYPK--GTAQLAIVPG-TSPDALTAAVAGLGY 62 (69)
T ss_dssp EEEESSCSTHH---HHHHHHHH-HHSTTEEEEEEETTT--TEEEEEECTT-SCHHHHHHHHHTTTS
T ss_pred EEECCcccHHH---HHHHHHHH-HcCCCeeEEEEEccC--CEEEEEECCC-CCHHHHHHHHHHCCC
Confidence 34456667654 34578888 789999999988752 1112234444 366677777776554
No 22
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=79.12 E-value=1.7 Score=27.62 Aligned_cols=65 Identities=12% Similarity=0.212 Sum_probs=39.7
Q ss_pred eEEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy281 77 QIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL 147 (162)
Q Consensus 77 ~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~ 147 (162)
...+.+.+....|+... ..|+.+| ..++|+..++|++.. +.-.-.+.+...+.+.+..+++..++
T Consensus 8 ~~~~~~~v~gm~C~~C~---~~ie~~l-~~~~GV~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~Gy 72 (84)
T 1q8l_A 8 EVVLKMKVEGMTCHSCT---STIEGKI-GKLQGVQRIKVSLDN--QEATIVYQPHLISVEEMKKQIEAMGF 72 (84)
T ss_dssp CEEEEEEECCTTTCSSC---HHHHHHH-HTCTTEEEEEECSTT--TEEEEEECTTTCCHHHHHHHHHHTTC
T ss_pred ceEEEEEECCcccHHHH---HHHHHHH-HcCCCeEEEEEEecC--CEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 44556666666665432 3477888 789999988887652 21222344444566667777666554
No 23
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=78.90 E-value=2.3 Score=29.56 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=42.1
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy281 79 KVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL 147 (162)
Q Consensus 79 ~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~ 147 (162)
.+.+.+....|+... ..|+.+| +.++|+..+.|++.. +.-.-.|++...+.+.+..+++..++
T Consensus 81 ~~~~~v~gm~C~~C~---~~ie~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~Gy 143 (149)
T 2ew9_A 81 NIELTITGMTCASCV---HNIESKL-TRTNGITYASVALAT--SKALVKFDPEIIGPRDIIKIIEEIGF 143 (149)
T ss_dssp EEEEEEESCCSHHHH---HHHHHHH-HHSSSCCEEEEETTT--TEEEEECCTTTSCHHHHHHHHHHHTC
T ss_pred eeEEEEEeccCHHHH---HHHHHHH-hcCCCeEEEEEEcCC--CEEEEEECCCCCCHHHHHHHHHhCCC
Confidence 345667788887543 5588888 789999999998752 22223466666666677777665443
No 24
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=78.90 E-value=3.1 Score=25.54 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=35.3
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy281 80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL 147 (162)
Q Consensus 80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~ 147 (162)
+.+.+ ...|... ...|+.+| ++++|+ .++|++..+. -... ...+.+.+..+++..++
T Consensus 4 ~~~~v-gm~C~~C---~~~i~~~l-~~~~gV-~v~v~~~~~~----~~v~-~~~~~~~i~~~i~~~Gy 60 (68)
T 3iwl_A 4 HEFSV-DMTCGGC---AEAVSRVL-NKLGGV-KYDIDLPNKK----VCIE-SEHSMDTLLATLKKTGK 60 (68)
T ss_dssp EEEEE-CCCSHHH---HHHHHHHH-HHHCSE-EEEEETTTTE----EEEE-ESSCHHHHHHHHHTTCS
T ss_pred EEEEE-CcCcHHH---HHHHHHHH-HcCCCe-EEEEEcCCCE----EEEE-ecCCHHHHHHHHHHcCC
Confidence 44555 6677554 35678888 678999 8888775211 1111 12467778877776654
No 25
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=78.89 E-value=1.4 Score=26.63 Aligned_cols=60 Identities=8% Similarity=0.139 Sum_probs=34.7
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccc
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENST 146 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~ 146 (162)
.+.+....|+... ..|+.+| ..++|+..+++++.. +.-.-.|++...+.+.+..+++..+
T Consensus 7 ~~~v~gm~C~~c~---~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~G 66 (75)
T 1yjr_A 7 ELVVRGMTCASCV---HKIESSL-TKHRGILYCSVALAT--NKAHIKYDPEIIGPRDIIHTIESLG 66 (75)
T ss_dssp EEEEETCCTTTHH---HHHHHHH-TTSTTEEEEEEETTT--TEEEEEECTTTTHHHHHHHHHHHHH
T ss_pred EEEECCcccHHHH---HHHHHHH-HcCCCEEEEEEEecC--CEEEEEECCCCCCHHHHHHHHHHcC
Confidence 3444566665543 3477888 789999999888652 2122234444444455555555433
No 26
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=78.51 E-value=2.7 Score=25.19 Aligned_cols=62 Identities=10% Similarity=0.195 Sum_probs=36.0
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccc
Q psy281 79 KVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENST 146 (162)
Q Consensus 79 ~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~ 146 (162)
.+.+.+....|+... ..|+.+| ..++|+..+.+++..+. -.-.|.+...+.+.+..+++..+
T Consensus 7 ~~~~~v~gm~C~~C~---~~i~~~l-~~~~gv~~~~v~~~~~~--~~v~~~~~~~~~~~i~~~i~~~G 68 (76)
T 1opz_A 7 EIAMQVSGMTCAACA---ARIEKGL-KRMPGVTDANVNLATET--VNVIYDPAETGTAAIQEKIEKLG 68 (76)
T ss_dssp EEEEEEESCCSTTHH---HHHHHHH-HTSTTEEEEEEEGGGTE--EEEEECTTTCCHHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHH---HHHHHHH-hcCCCeEEEEEEecCCE--EEEEECCCCCCHHHHHHHHHHCC
Confidence 344555566665542 3478888 78999999988875211 11234444445555666555443
No 27
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=77.84 E-value=3.1 Score=28.47 Aligned_cols=64 Identities=9% Similarity=0.088 Sum_probs=41.0
Q ss_pred EEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy281 78 IKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL 147 (162)
Q Consensus 78 V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~ 147 (162)
-.+.+.+....|+... ..|+.+| +.++||..+.|++.. ..-.-.|.+...+.+.+..+++..++
T Consensus 8 ~~~~l~v~Gm~C~~Ca---~~Ie~~L-~~~~GV~~v~v~~~~--~~~~V~~~~~~~~~~~i~~~i~~~Gy 71 (111)
T 2ofg_X 8 KTQQMQVGGMDCTSCK---LKIEGSL-ERLKGVAEASVTVAT--GRLTVTYDPKQVSEITIQERIAALGY 71 (111)
T ss_dssp EEEEEEESCCCGGGTH---HHHHHHH-TTSSSEEEEEEETTT--TEEEEEECTTTCSHHHHHHHHHTTTC
T ss_pred eEEEEEECCcCCHHHH---HHHHHHH-HcCCCeeEEEEECCC--CEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 3455666777776543 4588888 789999999988752 11222355555566677777766554
No 28
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=76.84 E-value=2 Score=28.07 Aligned_cols=60 Identities=23% Similarity=0.247 Sum_probs=38.0
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhcccc
Q psy281 80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENS 145 (162)
Q Consensus 80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~ 145 (162)
+.+.+....|+... ..|+.+| +.++||..+.|++.. ..-.-.|.+...+.+.+..+++..
T Consensus 5 ~~l~v~Gm~C~~C~---~~Ie~~L-~~~~GV~~v~v~l~~--~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCV---SNIESTL-SALQYVSSIVVSLEN--RSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHH---HHHHHHH-TTCTTEEEEEEETTT--TEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHH---HHHHHHH-HcCCCeeEEEEEccC--CEEEEEECCCCCCHHHHHHHHHhc
Confidence 45566677786543 4588888 789999999998762 112223444445555666666555
No 29
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=75.65 E-value=1.7 Score=25.65 Aligned_cols=60 Identities=10% Similarity=0.101 Sum_probs=34.1
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccc
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENST 146 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~ 146 (162)
.+.+....|+.. ...++.+| ..++|+..+.+++.. ..-.-.|.+...+.+.+..+++..+
T Consensus 6 ~~~v~gm~C~~C---~~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~G 65 (71)
T 2ldi_A 6 QMQVGGMRCAAC---ASSIERAL-ERLKGVAEASVTVAT--GRLTVTYDPKQVSEITIQERIAALG 65 (71)
T ss_dssp EEEEETCTTSGG---GHHHHTGG-GGCSSEEEEEEETTT--TEEEEEECTTTCCTHHHHHHHHTTT
T ss_pred EEEECCccCHHH---HHHHHHHH-hcCCCeeEEEEEecC--CEEEEEECCCCCCHHHHHHHHHHcC
Confidence 344445555543 23477888 789999988887652 1112234444445555666665544
No 30
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=73.32 E-value=2.9 Score=24.95 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=35.9
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccc
Q psy281 80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENST 146 (162)
Q Consensus 80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~ 146 (162)
+.+.+....|+... ..|+.+| ..++|+..+.+++.. +.-.-.|. ...+.+.+..+++..+
T Consensus 4 ~~~~v~gm~C~~c~---~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~~-~~~~~~~i~~~i~~~G 63 (72)
T 1fvq_A 4 VILAVHGMTCSACT---NTINTQL-RALKGVTKCDISLVT--NECQVTYD-NEVTADSIKEIIEDCG 63 (72)
T ss_dssp EEEEECSCCSHHHH---HHHHHHH-HTSSSEEEECCBTTT--TEEEEEEC-TTSCHHHHHHHHHHHT
T ss_pred EEEEECCeecHHHH---HHHHHHH-hcCCCeEEEEEEecC--CEEEEEEC-CCCCHHHHHHHHHHCC
Confidence 45666677786543 4578888 789999888877642 11112333 3345556666665444
No 31
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=73.20 E-value=7.7 Score=23.75 Aligned_cols=57 Identities=11% Similarity=0.104 Sum_probs=34.8
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCC-CceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALP-ARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL 147 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lp-gv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~ 147 (162)
.+.+. ..|+.. ...|+.+| +.++ |+.+++|++..+. -.-.+ ..+.+.+..+++..++
T Consensus 8 ~~~v~-m~C~~C---~~~ie~~l-~~~~~GV~~~~v~~~~~~--~~v~~---~~~~~~i~~~i~~~Gy 65 (73)
T 1cc8_A 8 QFNVV-MTCSGC---SGAVNKVL-TKLEPDVSKIDISLEKQL--VDVYT---TLPYDFILEKIKKTGK 65 (73)
T ss_dssp EEEEC-CCSHHH---HHHHHHHH-HTTTTSEEEEEEETTTTE--EEEEE---SSCHHHHHHHHHTTSS
T ss_pred EEEEe-eECHHH---HHHHHHHH-HhCCCCceEEEEECCCCE--EEEEE---eCCHHHHHHHHHHhCC
Confidence 34445 666543 45788889 7899 9999999875211 11111 2456677777766553
No 32
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=72.54 E-value=2.7 Score=29.44 Aligned_cols=62 Identities=15% Similarity=0.166 Sum_probs=40.3
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy281 80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL 147 (162)
Q Consensus 80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~ 147 (162)
+.+.+....|+... ..|+.+| +.++||..+.|++.. ..-.-.|.+...+.+.+..+++..++
T Consensus 76 ~~~~v~gm~C~~C~---~~ie~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~Gy 137 (151)
T 1p6t_A 76 AEFDIEGMTCAACA---NRIEKRL-NKIEGVANAPVNFAL--ETVTVEYNPKEASVSDLKEAVDKLGY 137 (151)
T ss_dssp EEEEESSCCSSSHH---HHHHHHH-TTSSSEEECCEETTT--TEEEEEECTTTCCHHHHHHHHHHHTC
T ss_pred cEEEecCCCCHHHH---HHHHHHH-hcCCCceEEEEEccC--CEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 34555666676643 4578888 789999998888752 22223466655677677777765554
No 33
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=72.01 E-value=1.5 Score=27.05 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=36.6
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy281 80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL 147 (162)
Q Consensus 80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~ 147 (162)
+.+.+....|+... ..|+.+| ..++|+..++|++.. +.-.-.+.+...+.+.+..+++..++
T Consensus 5 ~~~~v~gm~C~~C~---~~ie~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~Gy 66 (77)
T 1y3j_A 5 CYIQVTGMTCASCV---ANIERNL-RREEGIYSILVALMA--GKAEVRYNPAVIQPPMIAEFIRELGF 66 (77)
T ss_dssp EEEEESCGGGCSHH---HHHHHHH-TTSSSEEECCCBTTT--TBEEEEECTTTSCHHHHHHHHHHHTS
T ss_pred EEEEECCeeCHHHH---HHHHHHH-hcCCCeEEEEEEecC--CEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 34555666665543 3478888 789999888776652 21222344444556666666655443
No 34
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=71.34 E-value=2.2 Score=26.12 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=35.9
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccc
Q psy281 80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENST 146 (162)
Q Consensus 80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~ 146 (162)
+.+.+....|+... ..++.+| ..++|+..+.+++.. ..-.-.|.+...+.+.+..+++..+
T Consensus 5 ~~~~v~gm~C~~C~---~~i~~~l-~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~G 65 (80)
T 1jww_A 5 AEFDIEGMTCAACA---NRIEKRL-NKIEGVANAPVNFAL--ETVTVEYNPKEASVSDLKEAVDKLG 65 (80)
T ss_dssp EEEEEESCCCHHHH---HHHHHHH-HTSTTEEECCCCSSS--SEEEEEECTTTCCHHHHHHHHHHHT
T ss_pred EEEEECCccCHHHH---HHHHHHH-hcCCCeEEEEEEecC--CEEEEEECCCCCCHHHHHHHHHHcC
Confidence 34556677786543 3478888 789999887776542 1112234444455556666665544
No 35
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=71.17 E-value=3.7 Score=25.49 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=37.1
Q ss_pred EEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy281 78 IKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL 147 (162)
Q Consensus 78 V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~ 147 (162)
-++.+.+....|+... ..|+.+| +. +|+..+.|++..+. -.-.++ +.+.+..+++..++
T Consensus 5 ~~~~~~v~gm~C~~C~---~~ie~~l-~~-~gv~~~~v~~~~~~--~~v~~~----~~~~i~~~i~~~Gy 63 (73)
T 3fry_A 5 EKIVLELSGLSCHHCV---ARVKKAL-EE-AGAKVEKVDLNEAV--VAGNKE----DVDKYIKAVEAAGY 63 (73)
T ss_dssp EEEEEEEESSBCGGGH---HHHHHHH-HH-TTCEEEEECSSEEE--EEEEGG----GHHHHHHHHHHTTC
T ss_pred EEEEEEECCCCCHHHH---HHHHHHh-cc-CCcEEEEEEccCCE--EEEEEC----CHHHHHHHHHHcCC
Confidence 4455666666676543 5678888 67 99999998875211 111222 66677777776554
No 36
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=70.28 E-value=5.9 Score=25.73 Aligned_cols=64 Identities=19% Similarity=0.150 Sum_probs=37.4
Q ss_pred EEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy281 78 IKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL 147 (162)
Q Consensus 78 V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~ 147 (162)
..+.+.+....|+... ..|+.+| ..++|+..+.|++.. +.-.-.+.+...+.+.+..+++..++
T Consensus 16 ~~~~~~v~gm~C~~C~---~~ie~~l-~~~~GV~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~Gy 79 (95)
T 2kkh_A 16 QKSYFDVLGICCTSEV---PIIENIL-KSLDGVKEYSVIVPS--RTVIVVHDSLLISPFQIAKALNEARL 79 (95)
T ss_dssp EEEEEEETTCCTTTTH---HHHHHHH-HHSSSEEEEEEETTT--TEEEEEECTTTCCHHHHHHHHHHHTC
T ss_pred EEEEEEECCcCCHHHH---HHHHHHH-hcCCCeeEEEEEccC--CEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 3455666666665532 3477888 789999998887652 11112333434455666666655443
No 37
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A
Probab=69.45 E-value=4.2 Score=24.17 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=35.3
Q ss_pred EEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy281 82 FTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL 147 (162)
Q Consensus 82 ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~ 147 (162)
+.+....|+.. ...|+.+| ..++|+..+.|++..+.- .. ....+.+.+..+++..++
T Consensus 4 ~~v~gm~C~~C---~~~i~~~l-~~~~gv~~~~v~~~~~~~----~v-~~~~~~~~i~~~i~~~Gy 60 (66)
T 2roe_A 4 LKVEGMTCNHC---VMAVTKAL-KKVPGVEKVEVSLEKGEA----LV-EGTADPKALVQAVEEEGY 60 (66)
T ss_dssp EEEECCCSHHH---HHHHHHHH-HTSTTCCCEEECSSSCBE----EE-CSCCCHHHHHHHHHTTTC
T ss_pred EEECCeEcHHH---HHHHHHHH-HcCCCeEEEEEEeCCCEE----EE-CCCCCHHHHHHHHHHcCC
Confidence 34456677654 35678888 789999999998762111 11 223456667777666543
No 38
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=67.73 E-value=6.5 Score=29.35 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=43.7
Q ss_pred EEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy281 78 IKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL 147 (162)
Q Consensus 78 V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~ 147 (162)
-.+.|.+....|+... ..|+.+| ..++||..+.|++.. ..-.-.|.+...+.+.+..+++..++
T Consensus 122 ~~~~l~v~Gm~C~~C~---~~ie~~l-~~~~GV~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~Gy 185 (202)
T 2rop_A 122 STTLIAIAGMTCASCV---HSIEGMI-SQLEGVQQISVSLAE--GTATVLYNPAVISPEELRAAIEDMGF 185 (202)
T ss_dssp EEEEEEESCCCSTHHH---HHHHHHG-GGSSSEEEEEEETTT--TEEEEEECTTTCCHHHHHHHHHHHTS
T ss_pred eEEEEEECCccCHHHH---HHHHHHH-HcCCCeEEEEEEccC--CEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 4567888888888754 4588888 789999999998752 21222455555666677777766554
No 39
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=67.40 E-value=4.5 Score=23.31 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=24.6
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
.+.+....|+.. ...|+.+| ..++|+..+.|++.
T Consensus 4 ~~~v~gm~C~~C---~~~i~~~l-~~~~gv~~~~v~~~ 37 (64)
T 2xmm_A 4 QLTVPTIACEAC---AEAVTKAV-QNEDAQATVQVDLT 37 (64)
T ss_dssp EEECTTCCSHHH---HHHHHHHH-HHHCTTCEEEECTT
T ss_pred EEEECCcCcHHH---HHHHHHHH-hcCCCcEEEEEEec
Confidence 455667778654 34577888 67899998888764
No 40
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=65.50 E-value=5.7 Score=25.87 Aligned_cols=37 Identities=11% Similarity=0.062 Sum_probs=27.4
Q ss_pred EEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 78 IKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 78 V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
-.+.+.+....|+.. ...|+.+| +.++|+..+.|++.
T Consensus 22 ~~~~l~V~Gm~C~~C---~~~Ie~aL-~~~~GV~~v~v~l~ 58 (85)
T 2k2p_A 22 AGLSFHVEDMTCGHC---AGVIKGAI-EKTVPGAAVHADPA 58 (85)
T ss_dssp CEEEEECTTCCHHHH---HHHHHHHH-HHHSTTCEEEEETT
T ss_pred cEEEEEECCCCCHHH---HHHHHHHH-hcCCCeeEEEEECC
Confidence 345667777788654 34588888 78899999998875
No 41
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.89 E-value=9.3 Score=25.55 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=37.4
Q ss_pred EEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy281 78 IKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL 147 (162)
Q Consensus 78 V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~ 147 (162)
..+.|.+. ..|+.. ...|+.+| +.++||..+.|++..+. -.-.+ ..+.+.+..+++..++
T Consensus 19 ~~~~l~V~-m~C~~C---~~~Ie~aL-~~l~GV~~v~vdl~~~~--~~V~~---~~~~~~i~~~i~~~Gy 78 (98)
T 2crl_A 19 CTLEFAVQ-MTCQSC---VDAVRKSL-QGVAGVQDVEVHLEDQM--VLVHT---TLPSQEVQALLEGTGR 78 (98)
T ss_dssp EEEEEEEC-CCSHHH---HHHHHHTT-TTCTTCCEEEEETTTTE--EEEEE---SSCHHHHHHHHHTTTS
T ss_pred eEEEEEEe-eECHHH---HHHHHHHH-HcCCCceEEEEECCCCE--EEEEE---eCCHHHHHHHHHHhCC
Confidence 34455556 777654 45688888 78999999999875211 11112 2356677777776654
No 42
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=60.81 E-value=8.9 Score=26.43 Aligned_cols=59 Identities=14% Similarity=0.194 Sum_probs=33.6
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhcccc
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENS 145 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~ 145 (162)
.+.+....|+.. ...++.+| +.++|+..+.|++..+. ..-.|.+...+.+.+..+++..
T Consensus 7 ~~~v~gm~C~~C---~~~ie~~l-~~~~gv~~~~v~~~~~~--~~v~~~~~~~~~~~i~~~i~~~ 65 (149)
T 2ew9_A 7 FLQIKGMTCASC---VSNIERNL-QKEAGVLSVLVALMAGK--AEIKYDPEVIQPLEIAQFIQDL 65 (149)
T ss_dssp EEEEECCCSSSH---HHHHHHHH-HTTSSCCCEEEETTTTE--EEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCeecHHH---HHHHHHHH-hcCCCcEEEEEEecCCE--EEEEEcCCCCCHHHHHHHHhcC
Confidence 444455556543 23477888 67999999888765211 1112444444555566655543
No 43
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=58.79 E-value=15 Score=21.89 Aligned_cols=59 Identities=14% Similarity=0.194 Sum_probs=33.9
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccc
Q psy281 80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENST 146 (162)
Q Consensus 80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~ 146 (162)
+.+.+....|+... ..|+.+| ..++|+..+.|++.. ..-.-.|.+. ..+.+..+++..+
T Consensus 5 ~~~~v~gm~C~~C~---~~ie~~l-~~~~gV~~~~v~~~~--~~~~v~~~~~--~~~~i~~~i~~~G 63 (73)
T 1mwy_A 5 YSWKVSGMDCAACA---RKVENAV-RQLAGVNQVQVLFAT--EKLVVDADND--IRAQVESALQKAG 63 (73)
T ss_dssp EEEEEESCCSTTHH---HHHHHHH-HTSSSEEEEEEETTT--TEEEEEESSC--CHHHHHHHHHHHT
T ss_pred EEEEECCcCCHHHH---HHHHHHH-hcCCCeeEEEEEecC--CEEEEEECCC--CHHHHHHHHHHcC
Confidence 34555566665543 4478888 789999999988752 1111123332 2445555555444
No 44
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=46.27 E-value=66 Score=21.79 Aligned_cols=70 Identities=13% Similarity=0.254 Sum_probs=41.2
Q ss_pred HHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCC-CCchH--HHHHHHHHHHHHHhCCCceeEEE
Q psy281 39 SREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIP-HCSMA--TLIGLSIRVRLIRALPARFKVVV 115 (162)
Q Consensus 39 ~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p-~Cp~~--~~I~~~I~~aL~~~lpgv~~V~V 115 (162)
.++|.+.|..+ |+ +.+ |.++.++. . +..+.+++.+..+ ..++. ..|...|+.+|++.++.+..|.|
T Consensus 12 ~~~I~~~l~~~--~g----V~~---vh~lr~r~-~-G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vtI 80 (107)
T 2zzt_A 12 YDDIFAVLERF--PN----VHN---PHRVRIRR-V-GTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTI 80 (107)
T ss_dssp HHHHHHHHTTC--SS----CEE---EEEEEEEC-S-CC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHHHcC--CC----ccc---cEEEEEEE-E-CCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 46677777654 32 222 34455541 1 3344444444333 34544 48999999999777877888888
Q ss_pred EEec
Q psy281 116 EITP 119 (162)
Q Consensus 116 ~i~~ 119 (162)
.+..
T Consensus 81 hvEp 84 (107)
T 2zzt_A 81 HVEP 84 (107)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8763
No 45
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Probab=45.88 E-value=36 Score=20.03 Aligned_cols=34 Identities=6% Similarity=0.159 Sum_probs=24.3
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
.+.+....|+.. ...|+.+| +.++|+..+.|++.
T Consensus 6 ~~~v~gm~C~~C---~~~ie~~l-~~~~gv~~~~v~~~ 39 (71)
T 2aj0_A 6 VYRVDGLSCTNC---AAKFERNV-KEIEGVTEAIVNFG 39 (71)
T ss_dssp EEEEESCCCHHH---HHHHHHHH-HHSTTEEEEEECCS
T ss_pred EEEECCcccHHH---HHHHHHHH-HcCCCeEEEEEECC
Confidence 455556777554 34577888 78999998888765
No 46
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=45.44 E-value=40 Score=21.21 Aligned_cols=38 Identities=11% Similarity=0.085 Sum_probs=28.0
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
+.+.+.+++||....+...+++.. +.++++.-+.|+..
T Consensus 23 ~~v~f~~~~C~~C~~~~~~~~~~~-~~~~~~~~~~vd~~ 60 (105)
T 3m9j_A 23 VVVDFSATWCGPCKMIKPFFHSLS-EKYSNVIFLEVDVD 60 (105)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHH-HHSTTSEEEEEETT
T ss_pred EEEEEECCCChhhHHHHHHHHHHH-HHccCeEEEEEEhh
Confidence 344456899999999998888876 67777666666544
No 47
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=43.54 E-value=15 Score=21.62 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=23.2
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
.+.+....|+.. ...|+.+| +.+ |+..+.|++.
T Consensus 4 ~~~v~gm~C~~C---~~~i~~~l-~~~-gv~~~~v~~~ 36 (67)
T 2kyz_A 4 VLYVPDISCNHC---KMRISKAL-EEL-GVKNYEVSVE 36 (67)
T ss_dssp EEECGGGGSHHH---HHHHHHHH-HHH-TCSEEEEETT
T ss_pred EEEECCcCcHHH---HHHHHHHH-HHc-CCeEEEEECC
Confidence 455556667654 34588888 678 9999888865
No 48
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=42.96 E-value=46 Score=21.30 Aligned_cols=38 Identities=11% Similarity=0.112 Sum_probs=29.0
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
+.+.+.+++|+....+...+++.. +.++++.-+.|++.
T Consensus 21 vlv~f~a~wC~~C~~~~p~~~~~~-~~~~~~~~~~vd~~ 58 (105)
T 4euy_A 21 VLLFIKTENCGVCDVMLRKVNYVL-ENYNYVEKIEILLQ 58 (105)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHH-HTCTTEEEEEEEEC
T ss_pred EEEEEeCCCCcchHHHHHHHHHHH-HHcCCceEEEEECC
Confidence 445556889999999988888777 66777766777765
No 49
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=41.19 E-value=60 Score=20.03 Aligned_cols=38 Identities=8% Similarity=-0.067 Sum_probs=27.0
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
+.+...+++||....+...+++.. +.++++.-+.|.+.
T Consensus 19 ~~v~f~~~~C~~C~~~~~~~~~~~-~~~~~~~~~~v~~~ 56 (104)
T 2e0q_A 19 AVVDFWAEWCAPCLILAPIIEELA-EDYPQVGFGKLNSD 56 (104)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHH-HHCTTSEEEEEETT
T ss_pred EEEEEECCCChhHHHHhHHHHHHH-HHcCCceEEEEECC
Confidence 344555899999999988888766 67777555555543
No 50
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=40.83 E-value=67 Score=20.87 Aligned_cols=35 Identities=14% Similarity=-0.052 Sum_probs=24.4
Q ss_pred EEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEE
Q psy281 82 FTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEI 117 (162)
Q Consensus 82 ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i 117 (162)
+...+++||........+++.. +.++++.-+.|.+
T Consensus 30 l~f~~~~C~~C~~~~~~l~~~~-~~~~~~~~~~v~~ 64 (136)
T 1zzo_A 30 LWFWAPWCPTCQGEAPVVGQVA-ASHPEVTFVGVAG 64 (136)
T ss_dssp EEEECTTCHHHHHHHHHHHHHH-HHCTTSEEEEEEC
T ss_pred EEEEcCCChhHHHHHHHHHHHH-HHcCCeEEEEEeC
Confidence 3444889999988888888766 6676555555554
No 51
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=40.43 E-value=35 Score=26.67 Aligned_cols=59 Identities=14% Similarity=0.246 Sum_probs=35.8
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy281 79 KVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL 147 (162)
Q Consensus 79 ~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~ 147 (162)
++.+.+. ..|... ...|+.+| +.++||.+++|++.... -... ...+.+.+..+++..++
T Consensus 7 ~~~l~V~-MtC~~C---a~~IekaL-~~l~GV~~v~Vnl~~~~----v~V~-~~~~~~~I~~aI~~~Gy 65 (222)
T 1qup_A 7 EATYAIP-MHCENC---VNDIKACL-KNVPGINSLNFDIEQQI----MSVE-SSVAPSTIINTLRNCGK 65 (222)
T ss_dssp EEEEECC-CCSTTH---HHHHHHHH-TTCTTEEEEEEETTTTE----EEEE-ESSCHHHHHHHHHHTTC
T ss_pred EEEEEEc-cccHHH---HHHHHHHH-hcCCCeeEEEEEcCCCE----EEEe-ccCCHHHHHHHHHHcCC
Confidence 3444445 556543 35688889 78999999999875211 1111 12356677777766554
No 52
>2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain; 1.84A {Thermus thermophilus} SCOP: d.52.7.1 PDB: 2r1c_A
Probab=40.22 E-value=84 Score=21.25 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=26.2
Q ss_pred HHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCC
Q psy281 39 SREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTI 86 (162)
Q Consensus 39 ~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~ 86 (162)
+++|-+.|+.++||.++ .| -|.+|++ +.+-..++|-++.-.
T Consensus 13 ~~~ls~il~ei~Dprl~--~v---tVt~V~v--s~Dl~~AkVyvs~~~ 53 (95)
T 2dyj_A 13 KRALAEEIQALEDPRLF--LL---TVEAVRL--SKDGSVLSVYVEAFR 53 (95)
T ss_dssp HHHHHHHHHTCCCGGGT--TC---EEEEEEE--CTTSSEEEEEEECSS
T ss_pred HHHHHHHHHHhcCcccC--cE---EEEEEEE--CCCCCEEEEEEEeCC
Confidence 34455666889999885 33 3567777 444566777776543
No 53
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=39.54 E-value=56 Score=21.16 Aligned_cols=36 Identities=8% Similarity=0.016 Sum_probs=26.6
Q ss_pred EEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 82 FTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 82 ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
+.+.+++|+....+...+++.. +.++++.-+.|++.
T Consensus 31 v~f~a~~C~~C~~~~~~l~~l~-~~~~~v~~~~vd~~ 66 (112)
T 1syr_A 31 VDFFAEWCGPCKRIAPFYEECS-KTYTKMVFIKVDVD 66 (112)
T ss_dssp EEEECTTCHHHHHHHHHHHHHH-HHCTTSEEEEEETT
T ss_pred EEEECCCCHHHHHHHHHHHHHH-HHcCCCEEEEEECC
Confidence 3445889999999999888877 66777665666544
No 54
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=39.40 E-value=43 Score=26.70 Aligned_cols=60 Identities=13% Similarity=0.238 Sum_probs=37.1
Q ss_pred EEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy281 78 IKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL 147 (162)
Q Consensus 78 V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~ 147 (162)
.++.+.+. ..|... ...|+.+| +.++||.+++|++.... -... ...+.+.+..+++..++
T Consensus 7 ~~~~l~V~-MtC~~C---a~~IekaL-~~l~GV~~v~Vnl~~~~----v~V~-~~~~~~~I~~aIe~~Gy 66 (249)
T 1jk9_B 7 YEATYAIP-MHCENC---VNDIKACL-KNVPGINSLNFDIEQQI----MSVE-SSVAPSTIINTLRNCGK 66 (249)
T ss_dssp EEEEEECC-CCSSSH---HHHHHHHH-TTCTTEEEEEEETTTTE----EEEE-ESSCHHHHHHHHHTTTC
T ss_pred eeEEEEEe-eccHHH---HHHHHHHH-hccCCeeEEEEEcCCCe----EEEe-cCCCHHHHHHHHHHhCC
Confidence 33445555 556543 35688889 78999999999875211 1111 22456677777776664
No 55
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=39.23 E-value=65 Score=21.05 Aligned_cols=35 Identities=20% Similarity=0.079 Sum_probs=24.6
Q ss_pred EeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 83 TPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 83 tlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
...+++||........+++.. +.++++.=+.|.+.
T Consensus 30 ~f~~~~C~~C~~~~~~l~~~~-~~~~~~~~~~v~~~ 64 (136)
T 1lu4_A 30 WFWTPWCPFCNAEAPSLSQVA-AANPAVTFVGIATR 64 (136)
T ss_dssp EEECTTCHHHHHHHHHHHHHH-HHCTTSEEEEEECS
T ss_pred EEECCcChhHHHHHHHHHHHH-HHCCCcEEEEEEcC
Confidence 334889999988888888766 66766555555543
No 56
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=39.11 E-value=60 Score=20.24 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=26.2
Q ss_pred EEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 82 FTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 82 ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
+.+.+++||....+...+++.. +.++++.-+.|.+.
T Consensus 24 v~f~~~~C~~C~~~~~~l~~~~-~~~~~~~~~~v~~~ 59 (104)
T 2vim_A 24 VDFFAQWCGPCRNIAPKVEALA-KEIPEVEFAKVDVD 59 (104)
T ss_dssp EEEECTTCHHHHHHHHHHHHHH-HHCTTSEEEEEETT
T ss_pred EEEECCCCHHHHHhhHHHHHHH-HHCCCCEEEEEecc
Confidence 3345899999999988888766 66776665666544
No 57
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=39.08 E-value=57 Score=21.19 Aligned_cols=36 Identities=11% Similarity=0.076 Sum_probs=26.9
Q ss_pred EEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 82 FTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 82 ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
+.+.+++|+....+...+++.. +.++++.-+.|.+.
T Consensus 29 v~f~a~wC~~C~~~~p~l~~l~-~~~~~~~~~~vd~~ 64 (109)
T 3f3q_A 29 VDFYATWCGPCKMIAPMIEKFS-EQYPQADFYKLDVD 64 (109)
T ss_dssp EEEECTTCHHHHHHHHHHHHHH-HHCTTSEEEEEETT
T ss_pred EEEECCcCHhHHHHHHHHHHHH-HHCCCCEEEEEECC
Confidence 4456889999999998887777 67777666666554
No 58
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=38.44 E-value=22 Score=32.47 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=42.2
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhccccch
Q psy281 80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENSTL 147 (162)
Q Consensus 80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~~~ 147 (162)
+++.+....|+... ..|+++| +.++||.+++|++.. +.-.-.|++...+.+.+..+++..++
T Consensus 4 ~~l~V~GM~Ca~Ca---~~Ie~~L-~~~~GV~~v~Vnl~~--~~~~V~~d~~~~~~~~i~~ai~~~Gy 65 (723)
T 3j09_A 4 RTVRVTGMTCAMCV---KSIETAV-GSLEGVEEVRVNLAT--ETAFIRFDEKRIDFETIKRVIEDLGY 65 (723)
T ss_dssp EEEEEETCCSHHHH---HHHHHHH-HTSTTEEEEEEETTT--TEEEEEECTTTCCHHHHHHHHHHHCC
T ss_pred EEEEeCCCCchHHH---HHHHHHH-hcCCCceEEEEEcCC--CEEEEEeCCCcCCHHHHHHHHHhcCC
Confidence 34556677886543 4678888 789999999998762 22233456666677788887776543
No 59
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=37.75 E-value=23 Score=26.22 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=35.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHhcccc
Q psy281 80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAALENS 145 (162)
Q Consensus 80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aalen~ 145 (162)
+.+.+....|+.. ...|+.+| ..++||..+.|++.. ..-.-.|.+...+.+.+..+++..
T Consensus 22 ~~l~v~Gm~C~~C---~~~ie~~l-~~~~GV~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~ 81 (202)
T 2rop_A 22 LQLRIDGMHCKSC---VLNIEENI-GQLLGVQSIQVSLEN--KTAQVKYDPSCTSPVALQRAIEAL 81 (202)
T ss_dssp EEEEEESGGGSTH---HHHHHHHT-TSBTTEEEEEEETTT--TEEEEEECTTTCCHHHHHHHHTTS
T ss_pred EEEEECCeEcHHH---HHHHHHHH-hcCCCeEEEEEEecC--CEEEEEECCCCCCHHHHHHHHHHh
Confidence 3444455555543 34488888 789999998887652 112223555555566666666654
No 60
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=36.60 E-value=95 Score=20.82 Aligned_cols=50 Identities=18% Similarity=0.279 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHHHHhCCCc-eeEEEEEecCCCCCchhch---hhcCCHHHHHHhccc
Q psy281 90 SMATLIGLSIRVRLIRALPAR-FKVVVEITPGSHSTEFAIN---KQLADKERVAAALEN 144 (162)
Q Consensus 90 p~~~~I~~~I~~aL~~~lpgv-~~V~V~i~~~~h~~~~~w~---~~l~~~Erv~aalen 144 (162)
...+.|..++..+|.+.+|.. ..|.|+..... ..+ ..-.+++++...||.
T Consensus 16 ga~~aL~~EL~kRl~~~fpd~~~~V~Vr~~s~n-----~lsV~g~~k~dKe~i~eiLqE 69 (81)
T 1ghh_A 16 GAIDALAGELSRRIQYAFPDNEGHVSVRYAAAN-----NLSVIGATKEDKQRISEILQE 69 (81)
T ss_dssp THHHHHHHHHHHHHHHHCSSSCCEEEEEEESSC-----EEEEESCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCCCCCceEEEeecCCC-----ceeecCCChhHHHHHHHHHHH
Confidence 457899999999998889986 37888876322 222 111257788777764
No 61
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=36.11 E-value=68 Score=20.55 Aligned_cols=37 Identities=3% Similarity=-0.033 Sum_probs=27.1
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
.+.+..++||....+...+++.. +.++++.-+.|.+.
T Consensus 28 lv~f~a~wC~~C~~~~~~l~~~~-~~~~~v~~~~vd~~ 64 (111)
T 2pu9_C 28 VLDMFTQWCGPSKAMAPKYEKLA-EEYLDVIFLKLDCN 64 (111)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHH-HHCTTSEEEEEECS
T ss_pred EEEEECCcCHhHHHHCHHHHHHH-HHCCCeEEEEEecC
Confidence 34555799999999988888776 67777666666554
No 62
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=35.46 E-value=54 Score=21.65 Aligned_cols=36 Identities=11% Similarity=0.163 Sum_probs=26.3
Q ss_pred EEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 82 FTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 82 ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
+.+.+++|+....+...+++.. +.++++.-+.|++.
T Consensus 35 v~F~a~wC~~C~~~~p~l~~~~-~~~~~v~~~~vd~~ 70 (114)
T 2oe3_A 35 IDFYATWCGPCKMMQPHLTKLI-QAYPDVRFVKCDVD 70 (114)
T ss_dssp EEEECTTCHHHHHTHHHHHHHH-HHCTTSEEEEEETT
T ss_pred EEEECCCCHHHHHHHHHHHHHH-HHCCCCEEEEEECC
Confidence 3445899999999988888766 67777655555544
No 63
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=35.14 E-value=62 Score=21.32 Aligned_cols=35 Identities=9% Similarity=0.085 Sum_probs=26.1
Q ss_pred EeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 83 TPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 83 tlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
.+..++|+....+...+++.. +.++++.-+.|++.
T Consensus 37 ~F~a~wC~~C~~~~p~l~~l~-~~~~~v~~~~vd~d 71 (116)
T 3qfa_C 37 DFSATWCGPSKMIKPFFHSLS-EKYSNVIFLEVDVD 71 (116)
T ss_dssp EEECTTCHHHHHHHHHHHHHH-TTCTTSEEEEEETT
T ss_pred EEECCCCHHHHHHHHHHHHHH-HHCCCCEEEEEECC
Confidence 345789999999998888876 67777665666554
No 64
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=34.78 E-value=72 Score=20.76 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=25.8
Q ss_pred EEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 82 FTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 82 ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
+.+..++||....+...+++.. +.++++.-+.|++.
T Consensus 39 v~f~~~~C~~C~~~~~~l~~~~-~~~~~~~~~~vd~~ 74 (122)
T 2vlu_A 39 IDFTASWCGPCRIMAPVFADLA-KKFPNAVFLKVDVD 74 (122)
T ss_dssp EEEECTTCHHHHHHHHHHHHHH-HHCTTSEEEEEETT
T ss_pred EEEECCCCHHHHHHHHHHHHHH-HHCCCcEEEEEECC
Confidence 3445889999999988887766 67777655555544
No 65
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=34.72 E-value=73 Score=20.24 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=27.6
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
+.+.+..++|+....+...+++.. +.++++.-+.|++.
T Consensus 24 v~v~f~a~wC~~C~~~~~~~~~~~-~~~~~~~~~~vd~~ 61 (107)
T 1gh2_A 24 AVVKFTMRGCGPCLRIAPAFSSMS-NKYPQAVFLEVDVH 61 (107)
T ss_dssp EEEEEECSSCHHHHHHHHHHHHHH-HHCTTSEEEEEETT
T ss_pred EEEEEECCCChhhHHHHHHHHHHH-HHCCCcEEEEEECc
Confidence 344566899999999988888776 56766666666554
No 66
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=33.38 E-value=73 Score=19.87 Aligned_cols=36 Identities=6% Similarity=0.002 Sum_probs=25.6
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCCC-ceeEEEEE
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALPA-RFKVVVEI 117 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpg-v~~V~V~i 117 (162)
.+.+.+++||....+...+++.. +.+++ +.-+.|++
T Consensus 23 lv~f~~~~C~~C~~~~~~~~~~~-~~~~~~~~~~~v~~ 59 (106)
T 3die_A 23 LVDFWATACGPCKMIAPVLEELA-ADYEGKADILKLDV 59 (106)
T ss_dssp EEEEECSBCHHHHHHHHHHHHHH-HHTTTTCEEEEEET
T ss_pred EEEEECCCCHHHHHHhHHHHHHH-HHhcCCcEEEEEEC
Confidence 44556899999999998888777 66765 44445544
No 67
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=33.04 E-value=80 Score=19.92 Aligned_cols=37 Identities=5% Similarity=-0.074 Sum_probs=26.0
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCCC-ceeEEEEEe
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALPA-RFKVVVEIT 118 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpg-v~~V~V~i~ 118 (162)
.+...+++|+....+...+.+.. +.+++ +.-+.|++.
T Consensus 26 lv~f~a~~C~~C~~~~~~~~~~~-~~~~~~v~~~~vd~~ 63 (111)
T 3gnj_A 26 LVMFSRKNCHVCQKVTPVLEELR-LNYEESFGFYYVDVE 63 (111)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHH-HHTTTTSEEEEEETT
T ss_pred EEEEeCCCChhHHHHHHHHHHHH-HHcCCceEEEEEECC
Confidence 34456889999999988888777 66765 555555543
No 68
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=33.00 E-value=77 Score=21.22 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=26.6
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
+.+.+..++||....+...+++.. +.++++.-+.|.+.
T Consensus 41 vvv~f~a~wC~~C~~~~~~l~~l~-~~~~~v~~~~vd~d 78 (124)
T 1xfl_A 41 VVVDFTASWCGPCRFIAPFFADLA-KKLPNVLFLKVDTD 78 (124)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHH-HHCSSEEEEEEETT
T ss_pred EEEEEECCCCHHHHHHHHHHHHHH-HHCCCcEEEEEECc
Confidence 344556799999999988888766 66766555555443
No 69
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=32.47 E-value=59 Score=22.45 Aligned_cols=36 Identities=17% Similarity=0.033 Sum_probs=25.5
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
....+.++||....++.-+++.. +.. ++.=.+|+++
T Consensus 32 vv~y~~~~C~~C~~a~~~L~~l~-~e~-~i~~~~vDId 67 (107)
T 2fgx_A 32 LVVYGREGCHLCEEMIASLRVLQ-KKS-WFELEVINID 67 (107)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHH-HHS-CCCCEEEETT
T ss_pred EEEEeCCCChhHHHHHHHHHHHH-Hhc-CCeEEEEECC
Confidence 34467899999999999888876 444 3555566655
No 70
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=32.28 E-value=85 Score=22.59 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchh------hcCCHHHHHHhcc
Q psy281 92 ATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINK------QLADKERVAAALE 143 (162)
Q Consensus 92 ~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~------~l~~~Erv~aale 143 (162)
.++|.++|+..|.+. ..+.+++....|.....|+. +..+...|.++|+
T Consensus 21 ~eqI~kQV~yll~qG----w~~~lE~~d~~~~~~~yW~mWklPmf~~~d~~~Vl~Ele 74 (118)
T 3zxw_B 21 DAQIARQIQYAIDQG----YHPCVEFNETSNAEIRYWTMWKLPLFNCTNAQDVLNEVQ 74 (118)
T ss_dssp HHHHHHHHHHHHHHT----CEEEEEEESCCCTTCCCCEEESSCCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC----CeeEEEeccCCCcccCEEeecccCCcCCCCHHHHHHHHH
Confidence 677999999999543 58899999888887778872 2334555655554
No 71
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=32.26 E-value=83 Score=20.57 Aligned_cols=36 Identities=3% Similarity=-0.020 Sum_probs=26.7
Q ss_pred EEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 82 FTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 82 ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
+...+++||....+...+++.. +..+++.-+.|...
T Consensus 42 v~f~a~wC~~C~~~~~~l~~~~-~~~~~~~~~~vd~~ 77 (124)
T 1faa_A 42 LDMFTQWCGPCKAMAPKYEKLA-EEYLDVIFLKLDCN 77 (124)
T ss_dssp EEEECTTCHHHHHHHHHHHHHH-HHCTTSEEEEEECS
T ss_pred EEEECCcCHhHHHHhHHHHHHH-HHCCCCEEEEEecC
Confidence 3445899999999998888776 67777666666543
No 72
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=31.27 E-value=1e+02 Score=19.62 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=27.4
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
+.+.+..++||....+...+++.. +.++++.-+.|.+.
T Consensus 31 ~vv~f~~~~C~~C~~~~~~l~~~~-~~~~~~~~~~v~~~ 68 (118)
T 2vm1_A 31 VIIDFTASWCGPCRVIAPVFAEYA-KKFPGAIFLKVDVD 68 (118)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHH-HHCTTSEEEEEETT
T ss_pred EEEEEECCCCHhHHHHhHHHHHHH-HHCCCcEEEEEEcc
Confidence 344455799999999998888777 66776665666544
No 73
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=29.15 E-value=96 Score=20.75 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=27.2
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
.+.+.+++|+....+...+++.. +.++++.-+.|.+.
T Consensus 50 vv~f~a~wC~~C~~~~~~l~~l~-~~~~~v~~~~v~~~ 86 (139)
T 3d22_A 50 LANFSARWCGPSRQIAPYYIELS-ENYPSLMFLVIDVD 86 (139)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHH-HHCTTSEEEEEETT
T ss_pred EEEEECCCCHHHHHHHHHHHHHH-HHCCCCEEEEEeCc
Confidence 34455799999999988888777 66777666666654
No 74
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=29.09 E-value=1e+02 Score=20.34 Aligned_cols=37 Identities=11% Similarity=0.027 Sum_probs=26.8
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
.+.+.+++|+....+...+++.. +.++++.=+.|.+.
T Consensus 27 lv~f~a~wC~~C~~~~~~l~~l~-~~~~~v~~~~vd~~ 63 (118)
T 2f51_A 27 LVDFFATWCGPCQRLGQILPSIA-EANKDVTFIKVDVD 63 (118)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHH-HHCTTSEEEEEETT
T ss_pred EEEEECCCCHHHHHHHHHHHHHH-HHCCCeEEEEEECC
Confidence 34456899999999988887766 56666666666654
No 75
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=28.76 E-value=1.1e+02 Score=19.25 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=26.1
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEE
Q psy281 80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEI 117 (162)
Q Consensus 80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i 117 (162)
+.+.+.+++||....+...+++.. +.++++.-+.|.+
T Consensus 29 ~vv~f~~~~C~~C~~~~~~l~~~~-~~~~~v~~~~v~~ 65 (113)
T 1ti3_A 29 IVVDFTASWCPPCKMIAPIFAELA-KKFPNVTFLKVDV 65 (113)
T ss_dssp EEEEEECSSCHHHHHHHHHHHHHH-HHCSSEEEEEEET
T ss_pred EEEEEECCCCHHHHHHHHHHHHHH-HhCCCcEEEEEEc
Confidence 344556789999999998888777 6676555455544
No 76
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=28.54 E-value=93 Score=21.93 Aligned_cols=39 Identities=15% Similarity=-0.023 Sum_probs=27.7
Q ss_pred CeEEEEEEeCCCCCchHHHHHHHHHHHHHHhC--CCceeEEEEEe
Q psy281 76 NQIKVNFTPTIPHCSMATLIGLSIRVRLIRAL--PARFKVVVEIT 118 (162)
Q Consensus 76 ~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~l--pgv~~V~V~i~ 118 (162)
+.+.|. ....+.||....+...+...+ +.+ +| +|++.+.
T Consensus 27 a~v~i~-~f~D~~Cp~C~~~~~~~~~~~-~~~~~~~--~v~~~~~ 67 (175)
T 1z6m_A 27 APVKMI-EFINVRCPYCRKWFEESEELL-AQSVKSG--KVERIIK 67 (175)
T ss_dssp CSEEEE-EEECTTCHHHHHHHHHHHHHH-HHHHHTT--SEEEEEE
T ss_pred CCeEEE-EEECCCCcchHHHHHHHHHHH-HHHhhCC--cEEEEEE
Confidence 455554 467899999999998888877 555 44 5666654
No 77
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=28.45 E-value=1.1e+02 Score=18.99 Aligned_cols=36 Identities=8% Similarity=0.079 Sum_probs=24.4
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhC-CCceeEEEEE
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRAL-PARFKVVVEI 117 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~l-pgv~~V~V~i 117 (162)
.+...+++||....+...+++.. +.+ +++.-+.|..
T Consensus 24 vv~f~~~~C~~C~~~~~~l~~~~-~~~~~~~~~~~v~~ 60 (106)
T 1xwb_A 24 VLDFFATWCGPCKMISPKLVELS-TQFADNVVVLKVDV 60 (106)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHH-HHTTTTEEEEEEET
T ss_pred EEEEECCcCHHHHHhhHHHHHHH-HHhCCCeEEEEEec
Confidence 34455789999999888888766 556 4444445544
No 78
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=27.58 E-value=1.1e+02 Score=20.16 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=28.5
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
|.+....++|+....+...+++.- +..+++.-+.|+++
T Consensus 23 vvv~F~a~wC~~C~~~~p~~~~~~-~~~~~~~~~~vd~d 60 (105)
T 3zzx_A 23 VVIDFYATWCGPCKMIAPKLEELS-QSMSDVVFLKVDVD 60 (105)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHH-HHCTTEEEEEEETT
T ss_pred EEEEEECCCCCCccCCCcchhhhh-hccCCeEEEEEecc
Confidence 445567899999999988888766 67887766666554
No 79
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=27.33 E-value=1.1e+02 Score=18.86 Aligned_cols=36 Identities=14% Similarity=0.065 Sum_probs=24.4
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCCC-ceeEEEEE
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALPA-RFKVVVEI 117 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpg-v~~V~V~i 117 (162)
.+...+++||....+...+++.. +.+++ +.-+.|..
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~~~-~~~~~~~~~~~v~~ 58 (105)
T 1fb6_A 22 MVDFWAPWCGPCKLIAPVIDELA-KEYSGKIAVYKLNT 58 (105)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHH-HHTTTTCEEEEEET
T ss_pred EEEEECCCChHHHHHHHHHHHHH-HHhcCceEEEEEcC
Confidence 34455799999999988887766 56665 44444443
No 80
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=27.04 E-value=1.3e+02 Score=19.34 Aligned_cols=70 Identities=10% Similarity=0.098 Sum_probs=41.0
Q ss_pred HHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCC-CCch--HHHHHHHHHHHHHHhCCCceeEEE
Q psy281 39 SREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIP-HCSM--ATLIGLSIRVRLIRALPARFKVVV 115 (162)
Q Consensus 39 ~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p-~Cp~--~~~I~~~I~~aL~~~lpgv~~V~V 115 (162)
.++|.+.|.++..|+.- + |.++.++-. +..+.+++.+..+ ..+. ...+...+++.|++.++.+ .+.|
T Consensus 12 ~~~I~~~l~~~~~~gV~-~------vh~l~~~~~--g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~-~vtI 81 (94)
T 3byp_A 12 VERIRAFLQERIRGRAL-E------VHDLKTRRA--GPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QATI 81 (94)
T ss_dssp HHHHHHHHHHHHTTTCS-E------EEEEEEEEE--TTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTE-EEEE
T ss_pred HHHHHHHHHhcCCCCce-e------eeeEEEEEE--CCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCC-EEEE
Confidence 56777777765224321 2 344444312 2345555544433 3444 3678999999997778765 6777
Q ss_pred EEe
Q psy281 116 EIT 118 (162)
Q Consensus 116 ~i~ 118 (162)
++.
T Consensus 82 h~e 84 (94)
T 3byp_A 82 HVE 84 (94)
T ss_dssp EEE
T ss_pred EeC
Confidence 765
No 81
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=26.90 E-value=1.1e+02 Score=21.57 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchh------hcCCHHHHHHhcc
Q psy281 92 ATLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINK------QLADKERVAAALE 143 (162)
Q Consensus 92 ~~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~------~l~~~Erv~aale 143 (162)
.++|.++|+..|.+. ..+.+++.+..|.....|+. +..+...|.++|+
T Consensus 22 ~eqI~kQI~Yll~qG----w~p~lEf~d~~~~~~~yW~mwklPmf~~~d~~~Vl~Ele 75 (109)
T 1rbl_M 22 DRQIAAQIEYMIEQG----FHPLIEFNEHSNPEEFYWTMWKLPLFACAAPQQVLDEVR 75 (109)
T ss_dssp HHHHHHHHHHHHHHT----CEEEEEEESCCCTTCCCCEECSSCCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC----CEEEEEeccCccccccEEeecccCCcCCCCHHHHHHHHH
Confidence 578999999999653 57889998888877777774 2234545555544
No 82
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=26.79 E-value=76 Score=19.29 Aligned_cols=34 Identities=9% Similarity=-0.156 Sum_probs=22.4
Q ss_pred eCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 84 PTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 84 lT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
.+.++||....+...+++.. +..+++.-..+++.
T Consensus 6 f~~~~C~~C~~~~~~l~~l~-~~~~~i~~~~vdi~ 39 (85)
T 1ego_A 6 FGRSGCPYCVRAKDLAEKLS-NERDDFQYQYVDIR 39 (85)
T ss_dssp ECCTTSTHHHHHHHHHHHHH-HHHSSCEEEEECHH
T ss_pred EeCCCCCCHHHHHHHHHHHH-hcCCCceEEEEecc
Confidence 57899999998888777654 33355544445443
No 83
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=26.73 E-value=1.1e+02 Score=21.23 Aligned_cols=36 Identities=14% Similarity=0.056 Sum_probs=27.0
Q ss_pred EEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 82 FTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 82 ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
+.+..++|+....+...+++.. +..+++.-+.|.+.
T Consensus 37 v~F~a~wC~~C~~~~p~l~~l~-~~~~~v~~~~vd~~ 72 (153)
T 2wz9_A 37 VHFWAPWAPQCAQMNEVMAELA-KELPQVSFVKLEAE 72 (153)
T ss_dssp EEEECTTCHHHHHHHHHHHHHH-HHCTTSEEEEEETT
T ss_pred EEEECCCCHhHHHHHHHHHHHH-HHcCCeEEEEEECC
Confidence 3445899999999988888777 56777766667654
No 84
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=26.67 E-value=1.2e+02 Score=18.81 Aligned_cols=36 Identities=6% Similarity=0.057 Sum_probs=24.9
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCCC-ceeEEEEE
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALPA-RFKVVVEI 117 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpg-v~~V~V~i 117 (162)
.+...+++||....+...+++.. +.+++ +.-+.|++
T Consensus 22 lv~f~~~~C~~C~~~~~~l~~~~-~~~~~~~~~~~v~~ 58 (109)
T 2yzu_A 22 LVDFWAEWCAPCRMIAPILEEIA-KEYEGKLLVAKLDV 58 (109)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHH-HHTBTTBEEEEEET
T ss_pred EEEEECCCCHHHHHhhHHHHHHH-HHhhCceEEEEEEC
Confidence 34556899999999988887766 56664 44444444
No 85
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.36 E-value=47 Score=26.24 Aligned_cols=85 Identities=14% Similarity=0.020 Sum_probs=50.8
Q ss_pred eeeeeeeeeCCCCeEEEEEEeCCCCCchH--HHHHHHHHHHHHHhCCCceeEEEEEecCCCCCchhchhhcCCHHHHHHh
Q psy281 64 VDLSLIQVNNETNQIKVNFTPTIPHCSMA--TLIGLSIRVRLIRALPARFKVVVEITPGSHSTEFAINKQLADKERVAAA 141 (162)
Q Consensus 64 V~~v~I~~~d~~~~V~V~ltlT~p~Cp~~--~~I~~~I~~aL~~~lpgv~~V~V~i~~~~h~~~~~w~~~l~~~Erv~aa 141 (162)
+..|+|+ -....+.|.+..+-|+-=.. ..--..++..| +...+..++.|++. .-..|..+.++..+ .++.+
T Consensus 30 is~ieI~--r~~~~~~I~I~t~rPg~vIG~~G~~I~~L~~~l-~k~~~~~~v~I~i~---eV~~p~l~A~lvAe-~Ia~q 102 (210)
T 3j20_C 30 YGGLDIK--KTPLGTKVIIFAANPGYVIGRGGRRIRELTRIL-EKQFGLENPQIEVE---EIKNPYLNAKVQAV-RLAQA 102 (210)
T ss_dssp EEEEEEE--CCSSCCEEEEEESCHHHHHCSSSHHHHHHHHHH-HHHSSCSSCEEEEE---ECSCTTTCHHHHHH-HHHHH
T ss_pred cceEEEE--ECCCeEEEEEEeCCCceEEcCCchhHHHHHHHH-HHHhCCCceEEEEE---EecCCccCHHHHHH-HHHHH
Confidence 6778874 22467888888776652210 11124445555 33334445666664 22566777777665 89999
Q ss_pred cccc-chHHHHhhhc
Q psy281 142 LENS-TLIGVINQCI 155 (162)
Q Consensus 142 len~-~~~~~~~~~~ 155 (162)
||+. +.|+++++.+
T Consensus 103 Le~rv~fRra~k~ai 117 (210)
T 3j20_C 103 LERGIHFRRAAYAAL 117 (210)
T ss_dssp HHHTCCHHHHHHHHH
T ss_pred HhhcccHHHHHHHHH
Confidence 9976 6777777654
No 86
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=25.84 E-value=1e+02 Score=21.07 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=31.9
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEec
Q psy281 79 KVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEITP 119 (162)
Q Consensus 79 ~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~~ 119 (162)
.|.+.+..++|+....|...+++.. +..+++.=++|++..
T Consensus 25 ~vvv~F~a~wc~~C~~~~p~l~~la-~~~~~v~f~kvd~d~ 64 (118)
T 3evi_A 25 WVIIHLYRSSIPMCLLVNQHLSLLA-RKFPETKFVKAIVNS 64 (118)
T ss_dssp EEEEEEECTTSHHHHHHHHHHHHHH-HHCTTSEEEEEEGGG
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHH-HHCCCCEEEEEEhHH
Confidence 4556667899999999999888877 678888778887763
No 87
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=25.79 E-value=1.1e+02 Score=19.80 Aligned_cols=37 Identities=8% Similarity=-0.115 Sum_probs=26.3
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
.+....++||....+...+++.. +..+++.-+.|++.
T Consensus 23 vv~f~a~wC~~C~~~~~~l~~~~-~~~~~v~~~~vd~~ 59 (110)
T 2l6c_A 23 IVFFHKNLCPHCKNMEKVLDKFG-ARAPQVAISSVDSE 59 (110)
T ss_dssp EEEEECSSCSTHHHHHHHHHHHH-TTCTTSCEEEEEGG
T ss_pred EEEEECCCCHhHHHHHHHHHHHH-HHCCCcEEEEEcCc
Confidence 34566889999999988887766 56666655566544
No 88
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=25.65 E-value=1.3e+02 Score=18.95 Aligned_cols=36 Identities=11% Similarity=0.096 Sum_probs=25.0
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCC-CceeEEEEE
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALP-ARFKVVVEI 117 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lp-gv~~V~V~i 117 (162)
.+.+..++||....+...+++.. +.++ ++.-+.|.+
T Consensus 28 vv~f~~~~C~~C~~~~~~l~~~~-~~~~~~~~~~~vd~ 64 (112)
T 1ep7_A 28 VVDFTATWCGPCKMIAPLFETLS-NDYAGKVIFLKVDV 64 (112)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHH-HHTTTTSEEEEEET
T ss_pred EEEEECCCCHHHHHHHHHHHHHH-HHcCCCeEEEEEEC
Confidence 34456799999999988888766 6676 444455544
No 89
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=25.46 E-value=1.3e+02 Score=18.75 Aligned_cols=36 Identities=6% Similarity=-0.026 Sum_probs=24.3
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCCC-ceeEEEEE
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALPA-RFKVVVEI 117 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpg-v~~V~V~i 117 (162)
.+...+++||....+...+++.. +.+++ +.-+.|++
T Consensus 21 ~v~f~~~~C~~C~~~~~~l~~~~-~~~~~~v~~~~v~~ 57 (105)
T 1nsw_A 21 LVDFWAAWCGPCRMMAPVLEEFA-EAHADKVTVAKLNV 57 (105)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHH-HHSTTTCEEEEEET
T ss_pred EEEEECCCCHHHHHHHHHHHHHH-HHhcCCcEEEEEEC
Confidence 34456899999999988887766 56654 34444443
No 90
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=25.31 E-value=1.5e+02 Score=19.40 Aligned_cols=36 Identities=14% Similarity=-0.000 Sum_probs=24.1
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCC--CceeEEEEE
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALP--ARFKVVVEI 117 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lp--gv~~V~V~i 117 (162)
.+.+.+++||....+...+.+.. +.++ ++.=+.|.+
T Consensus 38 ll~f~~~~C~~C~~~~~~l~~~~-~~~~~~~~~~v~v~~ 75 (145)
T 3erw_A 38 ILHFWTSWCPPCKKELPQFQSFY-DAHPSDSVKLVTVNL 75 (145)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHH-HHCCCSSEEEEEEEC
T ss_pred EEEEECCCCHHHHHHHHHHHHHH-HHcCCCCEEEEEEEc
Confidence 33444999999988888888776 6676 444444443
No 91
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=25.21 E-value=1e+02 Score=20.79 Aligned_cols=37 Identities=14% Similarity=-0.010 Sum_probs=27.1
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
.+.+.+++|+....+...+++.. +.++++.-+.|.+.
T Consensus 41 vv~F~a~wC~~C~~~~p~l~~l~-~~~~~v~~~~vd~d 77 (125)
T 1r26_A 41 VAWFTAVWCGPCKTIERPMEKIA-YEFPTVKFAKVDAD 77 (125)
T ss_dssp EEEEECTTCHHHHHTHHHHHHHH-HHCTTSEEEEEETT
T ss_pred EEEEECCcCHhHHHHHHHHHHHH-HHCCCCEEEEEECC
Confidence 34455889999999988888766 66777666666554
No 92
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.56 E-value=1.2e+02 Score=20.54 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=28.5
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 80 VNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
+.+.+..++|+....+...+++.. +..+++.-+.|++.
T Consensus 33 vvv~f~a~wC~~C~~~~p~l~~la-~~~~~v~~~~vd~~ 70 (135)
T 2dbc_A 33 VVIHLYRSSVPMCLVVNQHLSVLA-RKFPETKFVKAIVN 70 (135)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHH-HHCSSEEEEEECCS
T ss_pred EEEEEECCCChHHHHHHHHHHHHH-HHCCCcEEEEEEhh
Confidence 456667999999999998888866 66776665666554
No 93
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=23.62 E-value=84 Score=24.11 Aligned_cols=95 Identities=13% Similarity=0.136 Sum_probs=48.1
Q ss_pred ceeeeccCCCCCCcccCCCcCCCcCCHHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCCCCchH
Q psy281 13 PTLYSKCEDRPVTAEDQNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIPHCSMA 92 (162)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p~Cp~~ 92 (162)
.++|....-||+..-+.=|-....+|.+.+.+.. ..|--...+-.|..-..+.+ ...++.+. .+..+.+.||..
T Consensus 39 ~i~y~~~dg~~~i~G~l~d~~~~~lt~~~~~~~~---~~p~~~~~~~~l~~~~~i~~--G~~~ak~~-v~~F~D~~Cp~C 112 (241)
T 1v58_A 39 VTIYLTPDGKHAISGYMYNEKGENLSNTLIEKEI---YAPAGREMWQRMEQSHWLLD--GKKDAPVI-VYVFADPFCPYC 112 (241)
T ss_dssp EEEEECTTSSCEEESCCBCTTCCBHHHHHHHHHT---TSGGGHHHHHHHHTSCCEEE--SCTTCSEE-EEEEECTTCHHH
T ss_pred eEEEEeCCCCEEEEEEEEeCCCCcccHHHHHhhh---cCChhHHHHHhccCCCCceE--CCCCCCeE-EEEEECCCChhH
Confidence 4778888888887544333222234544433321 11211111111111112222 11123333 456789999999
Q ss_pred HHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 93 TLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 93 ~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
..+...++..+ +. | +|.|.+.
T Consensus 113 ~~~~~~l~~~~-~~--g--~v~v~~~ 133 (241)
T 1v58_A 113 KQFWQQARPWV-DS--G--KVQLRTL 133 (241)
T ss_dssp HHHHHHHHHHH-HT--T--SEEEEEE
T ss_pred HHHHHHHHHHH-hC--C--cEEEEEE
Confidence 99999998877 33 3 4666544
No 94
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=22.95 E-value=1.4e+02 Score=18.45 Aligned_cols=36 Identities=6% Similarity=-0.082 Sum_probs=24.8
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCCC-ceeEEEEE
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALPA-RFKVVVEI 117 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpg-v~~V~V~i 117 (162)
.+.+.+++||....+...+++.. +.+++ +.-+.|..
T Consensus 25 lv~f~~~~C~~C~~~~~~~~~~~-~~~~~~~~~~~v~~ 61 (109)
T 3tco_A 25 LVDCWAEWCAPCHLYEPIYKKVA-EKYKGKAVFGRLNV 61 (109)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHH-HHTTTTSEEEEEET
T ss_pred EEEEECCCCHHHHhhhHHHHHHH-HHhCCCceEEEEcc
Confidence 44556899999999998888777 66664 33344443
No 95
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=22.27 E-value=1.2e+02 Score=18.84 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=24.1
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhCCC-ceeEEEEE
Q psy281 80 VNFTPTIPHCSMATLIGLSIRVRLIRALPA-RFKVVVEI 117 (162)
Q Consensus 80 V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpg-v~~V~V~i 117 (162)
+.+...+++||....+...+++.. +.+++ +.-+.|.+
T Consensus 23 ~lv~f~~~~C~~C~~~~~~~~~~~-~~~~~~~~~~~v~~ 60 (107)
T 2i4a_A 23 VLVDFWAEWCGPCKMIGPALGEIG-KEFAGKVTVAKVNI 60 (107)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHH-HHHTTSEEEEEEET
T ss_pred EEEEEECCCChhHHHHhHHHHHHH-HHhCCcEEEEEEEC
Confidence 344455899999999888887766 55553 33344443
No 96
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=21.87 E-value=78 Score=20.89 Aligned_cols=36 Identities=11% Similarity=0.024 Sum_probs=23.7
Q ss_pred EEeCCCCCchHHHHHHHHHHHHHHhCCC--ceeEEEEEe
Q psy281 82 FTPTIPHCSMATLIGLSIRVRLIRALPA--RFKVVVEIT 118 (162)
Q Consensus 82 ltlT~p~Cp~~~~I~~~I~~aL~~~lpg--v~~V~V~i~ 118 (162)
+.+.+++||....+...+++.. +.+++ +.-+.|.+.
T Consensus 38 v~f~a~~C~~C~~~~~~l~~l~-~~~~~~~v~~~~vd~d 75 (121)
T 2j23_A 38 IDFWATWCGPCKMIGPVFEKIS-DTPAGDKVGFYKVDVD 75 (121)
T ss_dssp EEEECTTCSTHHHHHHHHHHHH-TSTHHHHSEEEEEETT
T ss_pred EEEECCCCHhHHHHHHHHHHHH-HHCcCCcEEEEEEECc
Confidence 3445789999988888887665 55554 444555443
No 97
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=21.48 E-value=1.4e+02 Score=19.15 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=24.7
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
.+....++|+....+...+++.. +.+ ++.-+.|...
T Consensus 37 vv~f~a~wC~~C~~~~~~~~~~~-~~~-~~~~~~vd~~ 72 (117)
T 2xc2_A 37 VVDFFATWCGPCKTIAPLFKELS-EKY-DAIFVKVDVD 72 (117)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHH-TTS-SSEEEEEETT
T ss_pred EEEEECCCCHhHHHHhHHHHHHH-HHc-CcEEEEEECC
Confidence 34455799999999988888766 455 5555555443
No 98
>1dhn_A DHNA, 7,8-dihydroneopterin aldolase; pterin binding, folate biosynthesis, antibiotic target, beta; 1.65A {Staphylococcus aureus} SCOP: d.96.1.3 PDB: 1rri_A* 1rrw_A* 1rry_A* 1rs2_A* 1rs4_A* 1rsd_A* 1rsi_A* 1u68_A* 2dhn_A* 2nm2_A* 2nm3_A*
Probab=21.38 E-value=1.4e+02 Score=20.65 Aligned_cols=33 Identities=15% Similarity=0.086 Sum_probs=26.9
Q ss_pred CCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 86 IPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 86 ~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
...+.+-+.++..|-+.+.+.++.+..|+|++.
T Consensus 67 ~~~~~LiE~lA~~Ia~~~l~~~~~v~~v~V~v~ 99 (121)
T 1dhn_A 67 GKAVNLLEHLAERIANRINSQYNRVMETKVRIT 99 (121)
T ss_dssp SSCCSCHHHHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHHHHCCCceEEEEEEE
Confidence 355667788888888888777888999999987
No 99
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=21.18 E-value=1.2e+02 Score=22.40 Aligned_cols=38 Identities=11% Similarity=0.101 Sum_probs=24.8
Q ss_pred eEEEEEEeCCCCCchHHHHHHHHHHHHHHh-CCCceeEEEEEe
Q psy281 77 QIKVNFTPTIPHCSMATLIGLSIRVRLIRA-LPARFKVVVEIT 118 (162)
Q Consensus 77 ~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~-lpgv~~V~V~i~ 118 (162)
.++++|.. +.-+....+.+.|++.| ++ ++|+ +|+|+..
T Consensus 98 ~l~l~l~~--~~~~~~~~~a~~i~~~l-~~~i~GI-~v~i~~~ 136 (229)
T 3o6p_A 98 TLTMDILS--SDADSSKKTVEFVQGSI-QDALDGV-KVTVSPV 136 (229)
T ss_dssp CEEEEEEE--ECSHHHHHHHHHHHHHH-HHHSTTE-EEEEEEE
T ss_pred ceEEEEEe--CCChHHHHHHHHHHHHH-HHhCCCc-EEEEEec
Confidence 34555543 33466788899999999 56 7785 4555544
No 100
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=20.64 E-value=79 Score=18.90 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=21.7
Q ss_pred EEeCCCCCchHHHHHHHHHHHHHHhCC-CceeEEEEEe
Q psy281 82 FTPTIPHCSMATLIGLSIRVRLIRALP-ARFKVVVEIT 118 (162)
Q Consensus 82 ltlT~p~Cp~~~~I~~~I~~aL~~~lp-gv~~V~V~i~ 118 (162)
+....++||....+...+++.. +.++ ++.-+.|++.
T Consensus 7 v~f~~~~C~~C~~~~~~l~~~~-~~~~~~~~~~~vd~~ 43 (85)
T 1fo5_A 7 ELFTSPMCPHCPAAKRVVEEVA-NEMPDAVEVEYINVM 43 (85)
T ss_dssp EEEECCCSSCCCTHHHHHHHHH-HHCSSSEEEEEEESS
T ss_pred EEEeCCCCCchHHHHHHHHHHH-HHcCCceEEEEEECC
Confidence 3455778888777777776655 5565 3444445443
No 101
>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis}
Probab=20.57 E-value=1.6e+02 Score=20.54 Aligned_cols=88 Identities=7% Similarity=-0.011 Sum_probs=43.6
Q ss_pred CCCcCCCcCCHHHHHHHhccCCCCCCCCCceeecceeeeeeeeeCCCCeEEEEEEeCCC-CCchHHHHHHHHHHHHHHhC
Q psy281 29 QNDYITDEFDSREIFDLIRNIYDPEHPLTLEELHVVDLSLIQVNNETNQIKVNFTPTIP-HCSMATLIGLSIRVRLIRAL 107 (162)
Q Consensus 29 ~~~~~~~~~t~~~I~eaL~~V~DPEl~~~IVdLGlV~~v~I~~~d~~~~V~V~ltlT~p-~Cp~~~~I~~~I~~aL~~~l 107 (162)
+-.+...|...++|.+.|+.-..|.. ..| .+..- .++....|.+.-... |-+.-+ =-+.|-++|...+
T Consensus 15 ~~~g~~~M~~~~~I~~kL~~~l~p~~-l~V------~D~S~---g~gsHf~v~IVS~~F~Gks~v~-RHRlVy~aL~~ei 83 (105)
T 3o2e_A 15 QTQGPGSMVSKSIVEERLRSMLSPQF-LKV------TDNSG---GCGAAFNAYIVSQQFEGKGLLD-RQRLVNSAIAAEM 83 (105)
T ss_dssp ----CCCCCCHHHHHHHHHHHHCCSE-EEE------EECCB---TTBEEEEEEEECGGGTTCCHHH-HHHHHHHHTTTTG
T ss_pred ccCCCCcCcHHHHHHHHHHhhCCCCE-EEE------EECCC---CCCcEEEEEEEchHhCCCCHHH-HHHHHHHHHHHHH
Confidence 33444557889999999987776642 111 11110 112344444443332 222211 1234555564444
Q ss_pred CCceeEEEEEecCCCCCchhchhhc
Q psy281 108 PARFKVVVEITPGSHSTEFAINKQL 132 (162)
Q Consensus 108 pgv~~V~V~i~~~~h~~~~~w~~~l 132 (162)
.++-.+.+..- ...+|..+.
T Consensus 84 ~~IHALsi~t~-----TP~Ew~~~~ 103 (105)
T 3o2e_A 84 PQIHAFTMKCL-----TPGEWEAKN 103 (105)
T ss_dssp GGEEEEEEEEE-----CHHHHHHTT
T ss_pred hcCceeEEEeC-----CHHHHHHhh
Confidence 56666776654 567887654
No 102
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=20.50 E-value=1.5e+02 Score=19.86 Aligned_cols=35 Identities=9% Similarity=-0.053 Sum_probs=21.7
Q ss_pred EEeCCCCCchHHHHHHHHHHHHHHhCCC--ceeEEEEE
Q psy281 82 FTPTIPHCSMATLIGLSIRVRLIRALPA--RFKVVVEI 117 (162)
Q Consensus 82 ltlT~p~Cp~~~~I~~~I~~aL~~~lpg--v~~V~V~i 117 (162)
+.+.+++||........+++.. +.+.+ +.-+.|.+
T Consensus 31 v~F~~~~C~~C~~~~~~l~~~~-~~~~~~~v~vv~v~~ 67 (151)
T 2f9s_A 31 LNFWGTWCEPCKKEFPYMANQY-KHFKSQGVEIVAVNV 67 (151)
T ss_dssp EEEECTTCHHHHHHHHHHHHHH-HHHGGGTEEEEEEEE
T ss_pred EEEECCCCHHHHHHHHHHHHHH-HHhccCCeEEEEEEC
Confidence 3445889999887777777665 44443 44444444
No 103
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=20.46 E-value=1.2e+02 Score=20.51 Aligned_cols=37 Identities=8% Similarity=0.033 Sum_probs=25.3
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhCCC-ceeEEEEEe
Q psy281 81 NFTPTIPHCSMATLIGLSIRVRLIRALPA-RFKVVVEIT 118 (162)
Q Consensus 81 ~ltlT~p~Cp~~~~I~~~I~~aL~~~lpg-v~~V~V~i~ 118 (162)
.+.+.+++|+....+...+.+.. +.+++ +.-+.|.+.
T Consensus 28 lv~F~a~wC~~C~~~~~~l~~l~-~~~~~~v~~~~vd~~ 65 (140)
T 3hz4_A 28 VVMFYSPACPYCKAMEPYFEEYA-KEYGSSAVFGRINIA 65 (140)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHH-HHHTTTSEEEEEETT
T ss_pred EEEEECCCChhHHHHHHHHHHHH-HHhCCceEEEEEECC
Confidence 34456899999999888887766 55665 444555543
No 104
>2kvk_A Actin severing and dynamics regulatory protein; ADF/cofilin, hormone; NMR {Leishmania donovani}
Probab=20.31 E-value=2.4e+02 Score=20.00 Aligned_cols=39 Identities=13% Similarity=0.071 Sum_probs=24.6
Q ss_pred EEEEEEeCCC-CCchHH-HHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 78 IKVNFTPTIP-HCSMAT-LIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 78 V~V~ltlT~p-~Cp~~~-~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
-++.+..-+| +||.+. ++-..-++.|++.+.|. ++|+..
T Consensus 79 ~k~vfI~w~Pd~a~vk~KMlyassk~~lk~~l~~~--~~i~a~ 119 (144)
T 2kvk_A 79 EKLILIQWIPDTARPREKMMYSASRDALSSVSEGY--LPIQAN 119 (144)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCTTE--EEEEES
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCE--EEEEEC
Confidence 3455544444 677754 45677788888888774 556655
No 105
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=20.16 E-value=1.8e+02 Score=21.51 Aligned_cols=42 Identities=10% Similarity=0.085 Sum_probs=29.1
Q ss_pred CeEEEEEEeCCCCCchHHHHHHHHHHHHHHhCCCceeEEEEEe
Q psy281 76 NQIKVNFTPTIPHCSMATLIGLSIRVRLIRALPARFKVVVEIT 118 (162)
Q Consensus 76 ~~V~V~ltlT~p~Cp~~~~I~~~I~~aL~~~lpgv~~V~V~i~ 118 (162)
..|+|. ......||....+...+...|++.+..-.+|.+.+.
T Consensus 29 a~vtvv-ef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~ 70 (202)
T 3gha_A 29 APVTVV-EFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFV 70 (202)
T ss_dssp CSEEEE-EEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEE
T ss_pred CCEEEE-EEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEE
Confidence 455554 566899999999988887777555643236777665
Done!