BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2810
         (80 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1H4H|A Chain A, Oligosaccharide-Binding To Family 11 Xylanases: Both
           Covalent Intermediate And Mutant-Product Complexes
           Display 2,5b Conformations At The Active-Centre
 pdb|1H4H|B Chain B, Oligosaccharide-Binding To Family 11 Xylanases: Both
           Covalent Intermediate And Mutant-Product Complexes
           Display 2,5b Conformations At The Active-Centre
 pdb|1H4H|C Chain C, Oligosaccharide-Binding To Family 11 Xylanases: Both
           Covalent Intermediate And Mutant-Product Complexes
           Display 2,5b Conformations At The Active-Centre
 pdb|1H4H|D Chain D, Oligosaccharide-Binding To Family 11 Xylanases: Both
           Covalent Intermediate And Mutant-Product Complexes
           Display 2,5b Conformations At The Active-Centre
          Length = 209

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 37  CLFLWVFSPLEAYYLVNS 54
           C++ W   PL AYY+V+S
Sbjct: 83  CVYGWTVDPLVAYYIVDS 100


>pdb|2BVV|A Chain A, Sugar Ring Distortion In The Glycosyl-Enzyme
          Intermediate Of A Family G11 XYLANASE
          Length = 185

 Score = 26.9 bits (58), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 8/45 (17%)

Query: 16 WNTNEPELTPCFESTVLVWTP------CLFLWVFSPLEAYYLVNS 54
          W T  P  T  + + V  W P       LF W  SPL  YY+V+S
Sbjct: 42 WTTGSPFRTINYNAGV--WAPNGNGYLTLFGWTRSPLIEYYVVDS 84


>pdb|2NQY|A Chain A, Crystal Structure Of Alkaline Thermophlic Xylanase From
           Bacillus Sp. (Ncl 86-6-10) With Complex Xylotriose:
           Xylotriose Cleaved To Xylobiose And Xylose
 pdb|2NQY|B Chain B, Crystal Structure Of Alkaline Thermophlic Xylanase From
           Bacillus Sp. (Ncl 86-6-10) With Complex Xylotriose:
           Xylotriose Cleaved To Xylobiose And Xylose
          Length = 206

 Score = 26.9 bits (58), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 37  CLFLWVFSPLEAYYLVNS 54
           C++ W  SPL  YY+V+S
Sbjct: 83  CVYGWTVSPLVEYYIVDS 100


>pdb|1C5H|A Chain A, Hydrogen Bonding And Catalysis: An Unexpected
          Explanation For How A Single Amino Acid Substitution
          Can Change The Ph Optimum Of A Glycosidase
 pdb|1C5I|A Chain A, Hydrogen Bonding And Catalysis: An Unexpected
          Explanation For How A Single Amino Acid Substitution
          Can Change The Ph Optimum Of A Glycosidase
          Length = 185

 Score = 25.8 bits (55), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 8/45 (17%)

Query: 16 WNTNEPELTPCFESTVLVWTP------CLFLWVFSPLEAYYLVNS 54
          W T  P  T  + + V  W P       L+ W  SPL  YY+V+S
Sbjct: 42 WTTGSPFRTINYNAGV--WAPNGNGYLTLYGWTRSPLIEYYVVDS 84


>pdb|2QZ3|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 11
          Xylanase From Bacillus Subtilis In Complex With
          Xylotetraose
 pdb|2QZ3|B Chain B, Crystal Structure Of A Glycoside Hydrolase Family 11
          Xylanase From Bacillus Subtilis In Complex With
          Xylotetraose
 pdb|2Z79|A Chain A, High Resolution Crystal Structure Of A Glycoside
          Hydrolase Family 11 Xylanase Of Bacillus Subtilis
 pdb|2Z79|B Chain B, High Resolution Crystal Structure Of A Glycoside
          Hydrolase Family 11 Xylanase Of Bacillus Subtilis
          Length = 185

 Score = 25.8 bits (55), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 8/45 (17%)

Query: 16 WNTNEPELTPCFESTVLVWTP------CLFLWVFSPLEAYYLVNS 54
          W T  P  T  + + V  W P       L+ W  SPL  YY+V+S
Sbjct: 42 WTTGSPFRTINYNAGV--WAPNGNGYLTLYGWTRSPLIEYYVVDS 84


>pdb|2B42|B Chain B, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
          Complex With Bacillus Subtilis Xylanase
 pdb|1BVV|A Chain A, Sugar Ring Distortion In The Glycosyl-Enzyme
          Intermediate Of A Family G11 XYLANASE
 pdb|1XNB|A Chain A, High-Resolution Structures Of Xylanases From B.
          Circulans And T. Harzianum Identify A New Folding
          Pattern And Implications For The Atomic Basis Of The
          Catalysis
 pdb|3HD8|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
          Inhibitor-Iia In Complex With Bacillus Subtilis
          Xylanase
 pdb|3HD8|D Chain D, Crystal Structure Of The Triticum Aestivum Xylanase
          Inhibitor-Iia In Complex With Bacillus Subtilis
          Xylanase
          Length = 185

 Score = 25.8 bits (55), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 8/45 (17%)

Query: 16 WNTNEPELTPCFESTVLVWTP------CLFLWVFSPLEAYYLVNS 54
          W T  P  T  + + V  W P       L+ W  SPL  YY+V+S
Sbjct: 42 WTTGSPFRTINYNAGV--WAPNGNGYLTLYGWTRSPLIEYYVVDS 84


>pdb|1XXN|A Chain A, Crystal Structure Of A Mesophilic Xylanase A From
          Bacillus Subtilis 1a1
 pdb|2DCY|A Chain A, Crystal Structure Of Bacillus Subtilis Family-11
          Xylanase
 pdb|2DCY|B Chain B, Crystal Structure Of Bacillus Subtilis Family-11
          Xylanase
 pdb|2DCY|C Chain C, Crystal Structure Of Bacillus Subtilis Family-11
          Xylanase
 pdb|2DCY|D Chain D, Crystal Structure Of Bacillus Subtilis Family-11
          Xylanase
 pdb|2DCY|E Chain E, Crystal Structure Of Bacillus Subtilis Family-11
          Xylanase
          Length = 185

 Score = 25.8 bits (55), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 8/45 (17%)

Query: 16 WNTNEPELTPCFESTVLVWTP------CLFLWVFSPLEAYYLVNS 54
          W T  P  T  + + V  W P       L+ W  SPL  YY+V+S
Sbjct: 42 WTTGSPFRTINYNAGV--WAPNGNGYLTLYGWTRSPLIEYYVVDS 84


>pdb|2B46|X Chain X, Crystal Structure Of An Engineered Uninhibited Bacillus
          Subtilis Xylanase In Substrate Bound State
 pdb|3EXU|A Chain A, A Glycoside Hydrolase Family 11 Xylanase With An
          Extended Thumb Region
 pdb|3EXU|B Chain B, A Glycoside Hydrolase Family 11 Xylanase With An
          Extended Thumb Region
          Length = 185

 Score = 25.8 bits (55), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 8/45 (17%)

Query: 16 WNTNEPELTPCFESTVLVWTP------CLFLWVFSPLEAYYLVNS 54
          W T  P  T  + + V  W P       L+ W  SPL  YY+V+S
Sbjct: 42 WTTGSPFRTINYNAGV--WAPNGNGYLTLYGWTRSPLIEYYVVDS 84


>pdb|1HV1|A Chain A, Dissecting Electrostatic Interactions And The
          Ph-Dependent Activity Of A Family 11 Glycosidase
          Length = 185

 Score = 25.8 bits (55), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 8/45 (17%)

Query: 16 WNTNEPELTPCFESTVLVWTP------CLFLWVFSPLEAYYLVNS 54
          W T  P  T  + + V  W P       L+ W  SPL  YY+V+S
Sbjct: 42 WTTGSPFRTINYNAGV--WAPNGNGYLTLYGWTRSPLIEYYVVDS 84


>pdb|1BCX|A Chain A, Mutational And Crystallographic Analyses Of The Active
          Site Residues Of The Bacillus Circulans Xylanase
          Length = 185

 Score = 25.8 bits (55), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 8/45 (17%)

Query: 16 WNTNEPELTPCFESTVLVWTP------CLFLWVFSPLEAYYLVNS 54
          W T  P  T  + + V  W P       L+ W  SPL  YY+V+S
Sbjct: 42 WTTGSPFRTINYNAGV--WAPNGNGYLTLYGWTRSPLIEYYVVDS 84


>pdb|2B45|X Chain X, Crystal Structure Of An Engineered Uninhibited Bacillus
          Subtilis Xylanase In Free State
          Length = 185

 Score = 25.8 bits (55), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 8/45 (17%)

Query: 16 WNTNEPELTPCFESTVLVWTP------CLFLWVFSPLEAYYLVNS 54
          W T  P  T  + + V  W P       L+ W  SPL  YY+V+S
Sbjct: 42 WTTGSPFRTINYNAGV--WAPNGNGYLTLYGWTRSPLIEYYVVDS 84


>pdb|3LB9|A Chain A, Crystal Structure Of The B. Circulans Cpa123 Circular
           Permut
 pdb|3LB9|B Chain B, Crystal Structure Of The B. Circulans Cpa123 Circular
           Permut
 pdb|3LB9|C Chain C, Crystal Structure Of The B. Circulans Cpa123 Circular
           Permut
          Length = 182

 Score = 25.8 bits (55), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 8/45 (17%)

Query: 16  WNTNEPELTPCFESTVLVWTP------CLFLWVFSPLEAYYLVNS 54
           W T  P  T  + + V  W P       L+ W  SPL  YY+V+S
Sbjct: 106 WTTGSPFRTINYNAGV--WAPNGNGYLTLYGWTRSPLIEYYVVDS 148


>pdb|2DCZ|A Chain A, Thermal Stabilization Of Bacillus Subtilis Family-11
          Xylanase By Directed Evolution
 pdb|2DCZ|B Chain B, Thermal Stabilization Of Bacillus Subtilis Family-11
          Xylanase By Directed Evolution
          Length = 185

 Score = 25.4 bits (54), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 8/45 (17%)

Query: 16 WNTNEPELTPCFESTVLVWTP------CLFLWVFSPLEAYYLVNS 54
          W T  P  T  + + V  W P       L+ W  SPL  YY+V+S
Sbjct: 42 WTTGSPFRTINYNAGV--WAPNGNGYLTLYGWTRSPLIEYYVVDS 84


>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine
           Pancreatic Trypsin Inhibitor (Bpti)
          Length = 245

 Score = 25.4 bits (54), Expect = 8.3,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 5   CGTKFWDQNLTWNTNEPELTPCFESTVLVWTPC 37
           C    W   L+   NEP+L  C ++ +L    C
Sbjct: 138 CLISGWGNTLSSGVNEPDLLQCLDAPLLPQADC 170


>pdb|1XNC|A Chain A, Thermostabilization Of The Bacillus Circulans Xylanase,
          By The Introduction Of Disulfide Bonds
          Length = 185

 Score = 25.4 bits (54), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 8/45 (17%)

Query: 16 WNTNEPELTPCFESTVLVWTP------CLFLWVFSPLEAYYLVNS 54
          W T  P  T  + + V  W P       L+ W  SPL  YY+V+S
Sbjct: 42 WTTGSPFRTINYNAGV--WAPNGNGYLTLYGWTRSPLIEYYVVDS 84


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.483 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,653,432
Number of Sequences: 62578
Number of extensions: 91499
Number of successful extensions: 170
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 150
Number of HSP's gapped (non-prelim): 33
length of query: 80
length of database: 14,973,337
effective HSP length: 49
effective length of query: 31
effective length of database: 11,907,015
effective search space: 369117465
effective search space used: 369117465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)