Query psy2810
Match_columns 80
No_of_seqs 100 out of 206
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 17:30:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00957 MRP_assoc_pro multi 98.8 7.8E-09 1.7E-13 89.2 5.0 65 6-70 6-70 (1522)
2 PLN03232 ABC transporter C fam 98.6 4.1E-08 9E-13 84.7 4.0 64 2-69 7-75 (1495)
3 PLN03130 ABC transporter C fam 98.5 9.7E-08 2.1E-12 83.2 4.1 64 2-69 7-75 (1622)
4 PF10569 Thiol-ester_cl: Alpha 38.0 13 0.00028 19.0 0.3 17 24-40 10-26 (31)
5 PF03373 Octapeptide: Octapept 34.7 20 0.00043 13.3 0.5 6 74-79 1-6 (8)
6 TIGR02226 two_anch N-terminal 28.5 1E+02 0.0022 18.2 3.3 26 44-69 17-42 (82)
7 PF14610 DUF4448: Protein of u 28.3 45 0.00097 22.9 1.8 30 30-59 159-188 (189)
8 PF03967 PRCH: Photosynthetic 27.0 94 0.002 21.2 3.1 26 33-58 13-40 (136)
9 PF15102 TMEM154: TMEM154 prot 22.2 1E+02 0.0022 21.2 2.6 48 30-77 58-108 (146)
10 PF10324 7TM_GPCR_Srw: Serpent 21.1 98 0.0021 22.1 2.5 28 33-60 201-228 (318)
11 PF10642 Tom5: Mitochondrial i 20.4 1.3E+02 0.0028 17.0 2.4 16 37-53 32-47 (49)
No 1
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.77 E-value=7.8e-09 Score=89.22 Aligned_cols=65 Identities=40% Similarity=0.871 Sum_probs=55.6
Q ss_pred cccccCCCCCccCCCCCCcccchhheeehhhHHHHHHHHHHHHHHHHhcCCCCcCcchhhhhhhh
Q psy2810 6 GTKFWDQNLTWNTNEPELTPCFESTVLVWTPCLFLWVFSPLEAYYLVNSKFRDIPWNLLNRSKLD 70 (80)
Q Consensus 6 g~~fwd~~~~~~t~~Pdlt~CFq~TvLvwiPc~fLWi~~P~~~~~l~~s~~~~ip~s~L~~~K~v 70 (80)
|+++|+.+.++++..+|||+|||+++++|+|+.++++++|+.+++++++++++.+++.+...|++
T Consensus 6 ~~~~~~~~~~~~~~~~d~t~~f~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~ 70 (1522)
T TIGR00957 6 SDPLWDWNVTWHTSNPDFTKCFQNTVLAWVPCFYLWVCFPCYFLYLSRHDRGYIQMTHLNKTKTA 70 (1522)
T ss_pred CCCCCCCcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcchHHHHHHH
Confidence 45689887778999999999999999999999999999999999997766666777777666653
No 2
>PLN03232 ABC transporter C family member; Provisional
Probab=98.58 E-value=4.1e-08 Score=84.69 Aligned_cols=64 Identities=11% Similarity=0.196 Sum_probs=50.7
Q ss_pred ccccccc---ccCCCCCccCCCCCCcccchhheeehhhHHHHHHHHHHHHHHH--HhcCCCCcCcchhhhhhh
Q psy2810 2 DEFCGTK---FWDQNLTWNTNEPELTPCFESTVLVWTPCLFLWVFSPLEAYYL--VNSKFRDIPWNLLNRSKL 69 (80)
Q Consensus 2 ~~fCg~~---fwd~~~~~~t~~Pdlt~CFq~TvLvwiPc~fLWi~~P~~~~~l--~~s~~~~ip~s~L~~~K~ 69 (80)
+.+||+. ||++...++ ..| +|+|||+++++|+|++|+|+++|.+++++ ++++.++++. .+..|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 75 (1495)
T PLN03232 7 NWYCKPIAEGFWEKTVDGA-FGA-YTPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLR--KKYYNC 75 (1495)
T ss_pred HhhcCCccccCCCcccccc-cCC-CCccHHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCcccc--chHHHH
Confidence 4589654 687776666 788 99999999999999999999999999988 5555666665 555554
No 3
>PLN03130 ABC transporter C family member; Provisional
Probab=98.50 E-value=9.7e-08 Score=83.19 Aligned_cols=64 Identities=14% Similarity=0.233 Sum_probs=51.0
Q ss_pred ccccccc---ccCCCCCccCCCCCCcccchhheeehhhHHHHHHHHHHHHHHHHh--cCCCCcCcchhhhhhh
Q psy2810 2 DEFCGTK---FWDQNLTWNTNEPELTPCFESTVLVWTPCLFLWVFSPLEAYYLVN--SKFRDIPWNLLNRSKL 69 (80)
Q Consensus 2 ~~fCg~~---fwd~~~~~~t~~Pdlt~CFq~TvLvwiPc~fLWi~~P~~~~~l~~--s~~~~ip~s~L~~~K~ 69 (80)
+.+||+. ||++...++ ..| +|+|||+++++|+|++|+|+++|.++.++++ ++.++++. .+..|+
T Consensus 7 ~~~c~~~~~~~~~~~~~~~-~~~-~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 75 (1622)
T PLN03130 7 DWYCRPVPNGVWAKKVDNA-FGA-YTPCATDSLVINISHLVLLGLCLYRIWLIKKDHKVQRFCLR--SKWYNY 75 (1622)
T ss_pred hhhcCCCccCCCCcccccc-cCC-CCccHHhhHHHHHHHHHHHHHHHHHHHHhccccccCCcccc--chHHHH
Confidence 5689753 698776666 778 9999999999999999999999999998876 55556655 444444
No 4
>PF10569 Thiol-ester_cl: Alpha-macro-globulin thiol-ester bond-forming region; InterPro: IPR019565 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ]. This short highly conserved region of proteinase-binding alpha-macro-globulins contains the cysteine and a glutamine of a thiol-ester bond that is cleaved at the moment of proteinase binding, and mediates the covalent binding of the alpha-macro-globulin to the proteinase. The GCGEQ motif is highly conserved. ; PDB: 2B39_B 2PN5_A 4ACQ_C 1HZF_A 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=38.03 E-value=13 Score=19.04 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=13.5
Q ss_pred cccchhheeehhhHHHH
Q psy2810 24 TPCFESTVLVWTPCLFL 40 (80)
Q Consensus 24 t~CFq~TvLvwiPc~fL 40 (80)
.-|+|||....+|-++.
T Consensus 10 ~GCgEQtm~~~~P~v~~ 26 (31)
T PF10569_consen 10 YGCGEQTMSSFAPNVYA 26 (31)
T ss_dssp -SSTTHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhHHHHH
Confidence 57999999999887654
No 5
>PF03373 Octapeptide: Octapeptide repeat; InterPro: IPR005038 This octapeptide repeat is found in several bacterial proteins. The function of this repeat is unknown.; GO: 0019865 immunoglobulin binding
Probab=34.75 E-value=20 Score=13.29 Aligned_cols=6 Identities=67% Similarity=1.309 Sum_probs=4.6
Q ss_pred CCCCCC
Q psy2810 74 PGQESN 79 (80)
Q Consensus 74 ~~~~~~ 79 (80)
||.|.|
T Consensus 1 PgkeDn 6 (8)
T PF03373_consen 1 PGKEDN 6 (8)
T ss_pred Cccccc
Confidence 788876
No 6
>TIGR02226 two_anch N-terminal double-transmembrane domain. This model represents a prokaryotic N-terminal region of about 80 amino acids. The predicted membrane topology by TMHMM puts the N-terminus outside and spans the membrane twice, with a cytosolic region of about 25 amino acids between the two transmembrane regions. Member proteins tend to be between 600 and 1000 amino acids in length.
Probab=28.51 E-value=1e+02 Score=18.23 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCCCcCcchhhhhhh
Q psy2810 44 SPLEAYYLVNSKFRDIPWNLLNRSKL 69 (80)
Q Consensus 44 ~P~~~~~l~~s~~~~ip~s~L~~~K~ 69 (80)
.|+.++..++++++.++++.....+.
T Consensus 17 lplli~l~~r~~~~~~~~~~~~~l~~ 42 (82)
T TIGR02226 17 LPLLIHLLRRRPPRPVDFPALRFLRE 42 (82)
T ss_pred HHHHHHHHhcCCCCceeccchHHHHh
Confidence 56665555566666677766554443
No 7
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=28.32 E-value=45 Score=22.89 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=23.1
Q ss_pred heeehhhHHHHHHHHHHHHHHHHhcCCCCc
Q psy2810 30 TVLVWTPCLFLWVFSPLEAYYLVNSKFRDI 59 (80)
Q Consensus 30 TvLvwiPc~fLWi~~P~~~~~l~~s~~~~i 59 (80)
.+.+-+|.++..++.-.+++..+++|+++|
T Consensus 159 ~laI~lPvvv~~~~~~~~~~~~~~R~~Rri 188 (189)
T PF14610_consen 159 ALAIALPVVVVVLALIMYGFFFWNRKKRRI 188 (189)
T ss_pred eEEEEccHHHHHHHHHHHhhheeeccceec
Confidence 667889999999998888876665555544
No 8
>PF03967 PRCH: Photosynthetic reaction centre, H-chain N-terminal region; InterPro: IPR015810 The photosynthetic apparatus in non-oxygenic bacteria consists of light-harvesting (LH) protein-pigment complexes LH1 and LH2, which use carotenoid and bacteriochlorophyll as primary donors []. LH1 acts as the energy collection hub, temporarily storing it before its transfer to the photosynthetic reaction centre (RC) []. Electrons are transferred from the primary donor via an intermediate acceptor (bacteriopheophytin) to the primary acceptor (quinine Qa), and finally to the secondary acceptor (quinone Qb), resulting in the formation of ubiquinol QbH2. RC uses the excitation energy to shuffle electrons across the membrane, transferring them via ubiquinol to the cytochrome bc1 complex in order to establish a proton gradient across the membrane, which is used by ATP synthetase to form ATP [, , ]. The core complex is anchored in the cell membrane, consisting of one unit of RC surrounded by LH1; in some species there may be additional subunits []. RC consists of three subunits: L (light), M (medium), and H (heavy). Subunits L and M provide the scaffolding for the chromophore, while subunit H contains a cytoplasmic domain []. In Rhodopseudomonas viridis, there is also a non-membranous tetrahaem cytochrome (4Hcyt) subunit on the periplasmic surface. This entry represents the N-terminal domain of the photosynthetic reaction centre H subunit, which includes the transmembrane domain and part of the cytoplasmic domain [].; GO: 0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, 0019684 photosynthesis, light reaction, 0030077 plasma membrane light-harvesting complex; PDB: 1RZZ_H 1PST_H 2J8D_H 3DUQ_H 1FNP_H 1KBY_H 1E14_H 2HG3_H 1UMX_H 1YST_H ....
Probab=26.95 E-value=94 Score=21.20 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=17.8
Q ss_pred ehhhHHHHHHHHHHHHHHHHh--cCCCC
Q psy2810 33 VWTPCLFLWVFSPLEAYYLVN--SKFRD 58 (80)
Q Consensus 33 vwiPc~fLWi~~P~~~~~l~~--s~~~~ 58 (80)
+-+-..-+|+|.-.+++||++ +|.||
T Consensus 13 Aql~lyaFwiFFagLi~YLrrEdkREGY 40 (136)
T PF03967_consen 13 AQLVLYAFWIFFAGLIYYLRREDKREGY 40 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSST
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 334445678888888889996 45554
No 9
>PF15102 TMEM154: TMEM154 protein family
Probab=22.18 E-value=1e+02 Score=21.24 Aligned_cols=48 Identities=15% Similarity=0.240 Sum_probs=21.5
Q ss_pred heeehhhHHHHHH-HHHHHHHHHHhc--CCCCcCcchhhhhhhhccCCCCC
Q psy2810 30 TVLVWTPCLFLWV-FSPLEAYYLVNS--KFRDIPWNLLNRSKLDQDRPGQE 77 (80)
Q Consensus 30 TvLvwiPc~fLWi-~~P~~~~~l~~s--~~~~ip~s~L~~~K~v~~~~~~~ 77 (80)
.+.+-||.+-|-+ +.-+.++.++.+ |.+.-|-+.-.....-.+..|+|
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv~~~kRkr~K~~~ss~gsq~~~qt~e~~~E 108 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLVIYYKRKRTKQEPSSQGSQSALQTYELGSE 108 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHheeEEeecccCCCCccccccccccccccCcc
Confidence 5568899655533 333333333322 22222334334433444555554
No 10
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=21.12 E-value=98 Score=22.14 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=22.6
Q ss_pred ehhhHHHHHHHHHHHHHHHHhcCCCCcC
Q psy2810 33 VWTPCLFLWVFSPLEAYYLVNSKFRDIP 60 (80)
Q Consensus 33 vwiPc~fLWi~~P~~~~~l~~s~~~~ip 60 (80)
.-+||+.+-++.-+.+..+++.++++..
T Consensus 201 kiiP~il~~ilti~Li~~Lrk~~~~r~~ 228 (318)
T PF10324_consen 201 KIIPCILLPILTILLIIELRKAKKRRKK 228 (318)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccHhhhc
Confidence 6799999999999999889876655443
No 11
>PF10642 Tom5: Mitochondrial import receptor subunit or translocase; InterPro: IPR019603 This entry represents a short family of yeast proteins. Tom5 is one of three very small translocases of the mitochondrial outer membrane. Tom5 links mitochondrial preprotein receptors to the general import pore []. Although Tom5 has allegedly been identified in vertebrates this could not be confirmed.
Probab=20.37 E-value=1.3e+02 Score=16.97 Aligned_cols=16 Identities=19% Similarity=0.534 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy2810 37 CLFLWVFSPLEAYYLVN 53 (80)
Q Consensus 37 c~fLWi~~P~~~~~l~~ 53 (80)
.+.|| ++|+-+.++++
T Consensus 32 a~~Ly-lsP~~~~~vkk 47 (49)
T PF10642_consen 32 AALLY-LSPFAIDFVKK 47 (49)
T ss_pred HHHHH-HhHHHHHHHHh
Confidence 45666 69998887765
Done!