Query psy2810
Match_columns 80
No_of_seqs 100 out of 206
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 17:30:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_M Photosystem II reaction 14.5 80 0.0027 16.1 1.4 10 33-42 15-24 (36)
2 1eys_H Photosynthetic reaction 12.4 1.6E+02 0.0055 20.9 2.9 25 34-58 13-39 (259)
3 1av3_A Kappa-PVIIA; kappa-cono 9.8 86 0.003 14.7 0.5 6 25-30 7-12 (27)
4 2ns5_A Partitioning-defective 9.4 49 0.0017 19.8 -0.6 34 22-56 4-42 (85)
5 2p8g_A PAD, phenolic acid deca 8.2 44 0.0015 22.4 -1.3 18 16-33 91-108 (162)
6 2w2a_A P-coumaric acid decarbo 8.2 46 0.0016 23.0 -1.2 18 16-33 113-130 (194)
7 3nx2_A Ferulic acid decarboxyl 7.7 57 0.002 22.0 -0.9 17 16-32 98-114 (168)
8 3fxd_A Protein ICMQ; helix bun 7.1 99 0.0034 17.3 0.1 10 70-79 21-30 (57)
9 1rzh_H Reaction center protein 6.5 3.4E+02 0.012 19.3 2.7 26 33-58 13-40 (260)
10 2ks1_B Epidermal growth factor 6.1 3.7E+02 0.013 13.8 3.5 24 37-60 21-44 (44)
No 1
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=14.50 E-value=80 Score=16.09 Aligned_cols=10 Identities=40% Similarity=0.816 Sum_probs=7.1
Q ss_pred ehhhHHHHHH
Q psy2810 33 VWTPCLFLWV 42 (80)
Q Consensus 33 vwiPc~fLWi 42 (80)
+-+|++||-+
T Consensus 15 i~iPt~FLli 24 (36)
T 3arc_M 15 VLVPSVFLII 24 (36)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6678888754
No 2
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=12.45 E-value=1.6e+02 Score=20.87 Aligned_cols=25 Identities=16% Similarity=0.103 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHHHh--cCCCC
Q psy2810 34 WTPCLFLWVFSPLEAYYLVN--SKFRD 58 (80)
Q Consensus 34 wiPc~fLWi~~P~~~~~l~~--s~~~~ 58 (80)
-+-..-+|+|.-.+++||++ .|.||
T Consensus 13 ~~~~~~fw~ffa~li~yl~~e~~regy 39 (259)
T 1eys_H 13 QITIWAFWLFFFGLIIYLRREDKREGY 39 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCC
Confidence 34445678888888888886 45555
No 3
>1av3_A Kappa-PVIIA; kappa-conotoxin, potassium channel blocker, cystine knot; HET: HYP; NMR {Conus purpurascens} SCOP: g.3.6.1 PDB: 1kcp_A*
Probab=9.78 E-value=86 Score=14.71 Aligned_cols=6 Identities=33% Similarity=1.004 Sum_probs=4.5
Q ss_pred ccchhh
Q psy2810 25 PCFEST 30 (80)
Q Consensus 25 ~CFq~T 30 (80)
.||||.
T Consensus 7 kcfqhl 12 (27)
T 1av3_A 7 KCFQHL 12 (27)
T ss_dssp BCCGGG
T ss_pred HHHHHH
Confidence 688875
No 4
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=9.40 E-value=49 Score=19.80 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=22.1
Q ss_pred CCcccchhheeehhhH-----HHHHHHHHHHHHHHHhcCC
Q psy2810 22 ELTPCFESTVLVWTPC-----LFLWVFSPLEAYYLVNSKF 56 (80)
Q Consensus 22 dlt~CFq~TvLvwiPc-----~fLWi~~P~~~~~l~~s~~ 56 (80)
.+|.||+.+=++ ||| -..|+.-=-.--|.+...+
T Consensus 4 KvtV~fg~~~vv-VPC~dg~~tV~~L~~~A~~RY~K~~~k 42 (85)
T 2ns5_A 4 KVTVCFGRTRVD-VPCGDGRMKVFSLIQQAVTRYRKAVAK 42 (85)
T ss_dssp EEEEEETTEEEE-EEESSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEECCEEEE-EECCCCcccHHHHHHHHHHHHHHhcCC
Confidence 368899987777 998 5677766444444444333
No 5
>2p8g_A PAD, phenolic acid decarboxylase; 2635953, phenolic acid decarboxylase (PAD), structural genom joint center for structural genomics, JCSG; 1.36A {Bacillus subtilis} PDB: 3nad_A
Probab=8.21 E-value=44 Score=22.43 Aligned_cols=18 Identities=28% Similarity=0.829 Sum_probs=14.4
Q ss_pred ccCCCCCCcccchhheee
Q psy2810 16 WNTNEPELTPCFESTVLV 33 (80)
Q Consensus 16 ~~t~~Pdlt~CFq~TvLv 33 (80)
|.-+.|+-|.|||+.-+-
T Consensus 91 wv~e~pektvc~qndhi~ 108 (162)
T 2p8g_A 91 WVHEHPEITVCYQNDHID 108 (162)
T ss_dssp HHHHSGGGGCSBGGGCHH
T ss_pred hHHhCCceeeecCccHHH
Confidence 445789999999998763
No 6
>2w2a_A P-coumaric acid decarboxylase; lyase, active site, coumaric acids, decarboxylation, catalyt mechanism; 1.38A {Lactobacillus plantarum} PDB: 2w2b_A 2w2f_A 2gc9_A* 2wsj_A
Probab=8.21 E-value=46 Score=22.97 Aligned_cols=18 Identities=22% Similarity=0.610 Sum_probs=14.5
Q ss_pred ccCCCCCCcccchhheee
Q psy2810 16 WNTNEPELTPCFESTVLV 33 (80)
Q Consensus 16 ~~t~~Pdlt~CFq~TvLv 33 (80)
|--+.|+-|.|||+.-+-
T Consensus 113 w~~~~pe~tvc~qnd~i~ 130 (194)
T 2w2a_A 113 WVEEHPEITVTYQNEHID 130 (194)
T ss_dssp HHHHCGGGGCSBGGGCHH
T ss_pred hHhhCCceeEecCccHHH
Confidence 445789999999998763
No 7
>3nx2_A Ferulic acid decarboxylase; 4-vinylguaiacol, catalytic MECH phenolic acid decarboxylase superfamily, lyase; HET: FER; 2.01A {Enterobacter SP} PDB: 3nx1_A*
Probab=7.73 E-value=57 Score=21.99 Aligned_cols=17 Identities=41% Similarity=0.933 Sum_probs=13.4
Q ss_pred ccCCCCCCcccchhhee
Q psy2810 16 WNTNEPELTPCFESTVL 32 (80)
Q Consensus 16 ~~t~~Pdlt~CFq~TvL 32 (80)
|--+.|+-|.|||+--+
T Consensus 98 Wv~~~Pe~tvc~qnD~i 114 (168)
T 3nx2_A 98 WVMNNPEPTVCFQNDHI 114 (168)
T ss_dssp HHHHCCGGGCSBGGGCH
T ss_pred hhhhCcceEEEecCCcH
Confidence 45567999999999753
No 8
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=7.12 E-value=99 Score=17.27 Aligned_cols=10 Identities=30% Similarity=0.305 Sum_probs=7.5
Q ss_pred hccCCCCCCC
Q psy2810 70 DQDRPGQESN 79 (80)
Q Consensus 70 v~~~~~~~~~ 79 (80)
+..=||.|||
T Consensus 21 Ie~GPWe~SN 30 (57)
T 3fxd_A 21 IEKGPWDKSN 30 (57)
T ss_dssp HHHSCTTSCH
T ss_pred HHcCCchHHH
Confidence 5567888887
No 9
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=6.55 E-value=3.4e+02 Score=19.27 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=17.5
Q ss_pred ehhhHHHHHHHHHHHHHHHHh--cCCCC
Q psy2810 33 VWTPCLFLWVFSPLEAYYLVN--SKFRD 58 (80)
Q Consensus 33 vwiPc~fLWi~~P~~~~~l~~--s~~~~ 58 (80)
+-+-..-+|+|.-.+++||++ .|.||
T Consensus 13 Aq~~l~~Fw~ffa~Li~yL~~E~~REGY 40 (260)
T 1rzh_H 13 ASLAIYSFWIFLAGLIYYLQTENMREGY 40 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 334445678888888888886 45554
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=6.09 E-value=3.7e+02 Score=13.82 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcC
Q psy2810 37 CLFLWVFSPLEAYYLVNSKFRDIP 60 (80)
Q Consensus 37 c~fLWi~~P~~~~~l~~s~~~~ip 60 (80)
.+.+-+++-..++++++.+....+
T Consensus 21 v~~~~ii~~~~~~~~RRr~~~~kR 44 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRRHIVRKR 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCSCC
T ss_pred HHHHHHHHHHHHHHhhhhHhhccC
Done!