Query psy2810
Match_columns 80
No_of_seqs 100 out of 206
Neff 5.8
Searched_HMMs 13730
Date Fri Aug 16 17:30:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2810.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2810hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtm1 f.23.35.1 (M:1-36) Pho 25.9 12 0.00084 18.0 0.9 11 32-42 14-24 (36)
2 d1nbja_ g.3.3.2 (A:) Cycloviol 22.9 6 0.00044 18.2 -0.5 7 33-39 6-12 (30)
3 d1rzhh2 f.23.10.1 (H:11-35) Ph 22.5 35 0.0025 15.0 2.3 15 39-53 9-23 (26)
4 d1eysh2 f.23.10.1 (H:7-43) Pho 20.3 43 0.0031 16.0 2.4 17 37-53 10-26 (37)
5 d1kcpa_ g.3.6.1 (A:) Conotoxin 9.1 39 0.0028 14.8 0.3 6 25-30 7-12 (27)
6 d1be3k_ f.23.15.1 (K:) Subunit 8.1 74 0.0054 13.7 1.0 11 34-44 3-13 (26)
7 d1vlya2 d.250.1.1 (A:3-243) Hy 8.0 32 0.0023 20.6 -0.4 7 71-77 225-231 (241)
8 d2dloa1 g.39.1.3 (A:8-42) Thyr 6.9 48 0.0035 15.6 0.1 7 25-31 2-8 (35)
9 d2hyma2 b.1.2.1 (A:110-212) In 6.1 66 0.0048 18.4 0.4 12 68-79 90-101 (103)
10 d1o9ga_ c.66.1.29 (A:) rRNA me 4.8 73 0.0053 20.5 -0.0 7 1-7 55-61 (249)
No 1
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=25.87 E-value=12 Score=18.03 Aligned_cols=11 Identities=36% Similarity=0.803 Sum_probs=7.9
Q ss_pred eehhhHHHHHH
Q psy2810 32 LVWTPCLFLWV 42 (80)
Q Consensus 32 LvwiPc~fLWi 42 (80)
++-+|++||-+
T Consensus 14 FilvPt~FLli 24 (36)
T d2axtm1 14 FVLVPSVFLII 24 (36)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 36788888855
No 2
>d1nbja_ g.3.3.2 (A:) Cycloviolacin O1 {Plant (Viola odorata) [TaxId: 97441]}
Probab=22.86 E-value=6 Score=18.20 Aligned_cols=7 Identities=43% Similarity=1.179 Sum_probs=5.2
Q ss_pred ehhhHHH
Q psy2810 33 VWTPCLF 39 (80)
Q Consensus 33 vwiPc~f 39 (80)
|||||-.
T Consensus 6 v~ipctv 12 (30)
T d1nbja_ 6 VYIPCTV 12 (30)
T ss_dssp SSSCCSH
T ss_pred EEEeeee
Confidence 6888754
No 3
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=22.47 E-value=35 Score=14.99 Aligned_cols=15 Identities=33% Similarity=0.718 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHh
Q psy2810 39 FLWVFSPLEAYYLVN 53 (80)
Q Consensus 39 fLWi~~P~~~~~l~~ 53 (80)
-+|++....++|+.+
T Consensus 9 ~fw~ffalli~ylqt 23 (26)
T d1rzhh2 9 SFWIFLAGLIYYLQT 23 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 467777777777765
No 4
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=20.29 E-value=43 Score=15.95 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy2810 37 CLFLWVFSPLEAYYLVN 53 (80)
Q Consensus 37 c~fLWi~~P~~~~~l~~ 53 (80)
..-+|++.--.++|+++
T Consensus 10 ly~Fw~FFagLi~YL~r 26 (37)
T d1eysh2 10 IWAFWLFFFGLIIYLRR 26 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34567777777778885
No 5
>d1kcpa_ g.3.6.1 (A:) Conotoxin {Conus purpurascens, kappa-pVIIa [TaxId: 41690]}
Probab=9.10 E-value=39 Score=14.79 Aligned_cols=6 Identities=33% Similarity=1.004 Sum_probs=4.4
Q ss_pred ccchhh
Q psy2810 25 PCFEST 30 (80)
Q Consensus 25 ~CFq~T 30 (80)
.||||.
T Consensus 7 kcfqhl 12 (27)
T d1kcpa_ 7 KCFQHL 12 (27)
T ss_dssp BCCTTC
T ss_pred HHHHHH
Confidence 688875
No 6
>d1be3k_ f.23.15.1 (K:) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.11 E-value=74 Score=13.66 Aligned_cols=11 Identities=36% Similarity=0.882 Sum_probs=8.5
Q ss_pred hhhHHHHHHHH
Q psy2810 34 WTPCLFLWVFS 44 (80)
Q Consensus 34 wiPc~fLWi~~ 44 (80)
|+|..-||-..
T Consensus 3 wvptaqlwgav 13 (26)
T d1be3k_ 3 WVPTAQLWGAV 13 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred cchHHHHHhhh
Confidence 89998888543
No 7
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.98 E-value=32 Score=20.56 Aligned_cols=7 Identities=43% Similarity=0.335 Sum_probs=5.1
Q ss_pred ccCCCCC
Q psy2810 71 QDRPGQE 77 (80)
Q Consensus 71 ~~~~~~~ 77 (80)
=|++|||
T Consensus 225 GCY~GQE 231 (241)
T d1vlya2 225 GCYTGQE 231 (241)
T ss_dssp CCCTTHH
T ss_pred CCcCcHH
Confidence 3788887
No 8
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.92 E-value=48 Score=15.57 Aligned_cols=7 Identities=29% Similarity=0.880 Sum_probs=3.8
Q ss_pred ccchhhe
Q psy2810 25 PCFESTV 31 (80)
Q Consensus 25 ~CFq~Tv 31 (80)
.|+|+|.
T Consensus 2 ~Cy~~tl 8 (35)
T d2dloa1 2 GCYVATL 8 (35)
T ss_dssp CCCCSSC
T ss_pred hhHHHHH
Confidence 3666654
No 9
>d2hyma2 b.1.2.1 (A:110-212) Interferon-alpha/beta receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.11 E-value=66 Score=18.36 Aligned_cols=12 Identities=50% Similarity=0.523 Sum_probs=9.2
Q ss_pred hhhccCCCCCCC
Q psy2810 68 KLDQDRPGQESN 79 (80)
Q Consensus 68 K~v~~~~~~~~~ 79 (80)
|-.+-.|||||.
T Consensus 90 KCtllqP~qESe 101 (103)
T d2hyma2 90 KCTLLPPGQESE 101 (103)
T ss_dssp EEEECCCCCSCC
T ss_pred eEEEECCCcccc
Confidence 346778999985
No 10
>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}
Probab=4.81 E-value=73 Score=20.49 Aligned_cols=7 Identities=43% Similarity=1.047 Sum_probs=0.0
Q ss_pred Ccccccc
Q psy2810 1 MDEFCGT 7 (80)
Q Consensus 1 ~~~fCg~ 7 (80)
+|.+|||
T Consensus 55 lDPmCGS 61 (249)
T d1o9ga_ 55 WDPCCGS 61 (249)
T ss_dssp EETTCTT
T ss_pred eccccCc
Done!