RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2810
         (80 letters)



>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated
          protein (MRP).  This model describes multi drug
          resistance-associated protein (MRP) in eukaryotes. The
          multidrug resistance-associated protein is an integral
          membrane protein that causes multidrug resistance when
          overexpressed in mammalian cells. It belongs to ABC
          transporter superfamily. The protein topology and
          function was experimentally demonstrated by epitope
          tagging and immunofluorescence. Insertion of tags in
          the critical regions associated with drug efflux,
          abrogated its function. The C-terminal domain seem to
          highly conserved [Transport and binding proteins,
          Other].
          Length = 1522

 Score = 73.4 bits (180), Expect = 4e-17
 Identities = 26/64 (40%), Positives = 35/64 (54%)

Query: 6  GTKFWDQNLTWNTNEPELTPCFESTVLVWTPCLFLWVFSPLEAYYLVNSKFRDIPWNLLN 65
              WD N+TW+T+ P+ T CF++TVL W PC +LWV  P    YL       I    LN
Sbjct: 6  SDPLWDWNVTWHTSNPDFTKCFQNTVLAWVPCFYLWVCFPCYFLYLSRHDRGYIQMTHLN 65

Query: 66 RSKL 69
          ++K 
Sbjct: 66 KTKT 69


>gnl|CDD|143309 cd05901, Ig_Versican, Immunoglobulin (Ig)-like domain of the
          chondroitin sulfate proteoglycan core protein (CSPG),
          versican.  Ig_Versican: immunoglobulin (Ig)-like domain
          of the chondroitin sulfate proteoglycan core protein
          (CSPG), versican. In CSPGs, the Ig-like domain is
          followed by hyaluronan (HA)-binding tandem repeats, and
          a C-terminal region with epidermal growth factor-like,
          lectin-like, and complement regulatory protein-like
          domains. Separating these N- and C-terminal regions is
          a nonhomologous glycosaminoglycan attachment region. In
          cartilage, the CSPG aggrecan (not included in this
          group) forms cartilage link protein stabilized
          aggregates with HA. These aggregates contribute to the
          tissue's load bearing properties. Like aggrecan,
          versican has a wide distribution in connective tissue
          and extracellular matrices. Aggregates having other
          CSPGs substituting for aggrecan may contribute to the
          structural integrity of many different tissues. Members
          of the vertebrate HPLN (hyaluronan/HA and proteoglycan
          binding link) protein family are physically linked
          adjacent to CSPG genes.
          Length = 117

 Score = 29.2 bits (65), Expect = 0.11
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 36 PCLFLWVFSPLEAYYLVNSKFRDIPWNLLNRSKLDQDRPGQE 77
          PC F      L    +  S+F  I W     +K++ D+ G++
Sbjct: 8  PCRFS-TLPTLPPSVITTSEFLRIKW-----TKIEVDKNGKD 43


>gnl|CDD|224541 COG1626, TreA, Neutral trehalase [Carbohydrate transport and
           metabolism].
          Length = 558

 Score = 27.0 bits (60), Expect = 1.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 43  FSPLEAYYLVNSKFRDIPWNLLNRSKLDQDRPGQES 78
             P + Y  V +     P  +LNR   D+D P QES
Sbjct: 264 LQPKQGYSRVVTLGDGSPPEVLNRYWDDRDTPRQES 299


>gnl|CDD|215512 PLN02950, PLN02950, 4-alpha-glucanotransferase.
          Length = 909

 Score = 25.8 bits (57), Expect = 2.4
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 12/72 (16%)

Query: 10 WDQNLTWNTNEP-----------ELTPCFESTVLVWTPCLFL-WVFSPLEAYYLVNSKFR 57
          W Q+L    +EP            L+P  +   LVW   + +   FS   +YY+V+    
Sbjct: 21 WGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYVVDDNKN 80

Query: 58 DIPWNLLNRSKL 69
           + W    + KL
Sbjct: 81 VLRWEAGKKRKL 92


>gnl|CDD|239657 cd03685, ClC_6_like, ClC-6-like chloride channel proteins. This CD
           includes ClC-6, ClC-7 and ClC-B, C, D in plants.
           Proteins in this family are ubiquitous in eukarotes and
           their functions are unclear. They are expressed in
           intracellular organelles membranes.  This family belongs
           to the ClC superfamily of chloride ion channels, which
           share the unique double-barreled architecture and
           voltage-dependent gating mechanism. The gating is
           conferred by the permeating anion itself, acting as the
           gating charge. ClC chloride ion channel superfamily
           perform a variety of functions including cellular
           excitability regulation, cell volume regulation,
           membrane potential stabilization, acidification of
           intracellular organelles, signal transduction, and
           transepithelial transport in animals.
          Length = 466

 Score = 24.9 bits (55), Expect = 5.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 6   GTKFWDQNLTWNT 18
              FW+Q LTW T
Sbjct: 217 VASFWNQALTWRT 229


>gnl|CDD|222827 PHA01635, PHA01635, hypothetical protein.
          Length = 231

 Score = 24.3 bits (53), Expect = 8.5
 Identities = 7/28 (25%), Positives = 14/28 (50%)

Query: 40 LWVFSPLEAYYLVNSKFRDIPWNLLNRS 67
          LW  + L  YY     + ++ W  +N++
Sbjct: 24 LWENNELALYYTYGGSYGEVIWIFVNKT 51


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.137    0.483 

Gapped
Lambda     K      H
   0.267   0.0685    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,872,326
Number of extensions: 278218
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 9
Length of query: 80
Length of database: 10,937,602
Length adjustment: 49
Effective length of query: 31
Effective length of database: 8,764,256
Effective search space: 271691936
Effective search space used: 271691936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)