RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2810
         (80 letters)



>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding
          protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
          Length = 135

 Score = 25.5 bits (56), Expect = 1.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 13 NLTWNTNEPELTPCFE 28
          NLT+ T+   L   FE
Sbjct: 54 NLTYRTSPDTLRRVFE 69


>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif,
          structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
          d.58.7.1
          Length = 95

 Score = 24.9 bits (55), Expect = 2.1
 Identities = 5/16 (31%), Positives = 7/16 (43%)

Query: 13 NLTWNTNEPELTPCFE 28
           L+  T E +L   F 
Sbjct: 22 GLSLYTTERDLREVFS 37


>3n9u_C Cleavage and polyadenylation specificity factor S;
          protein-protein complex, coexpression, heterotetramer,
          mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
          Length = 156

 Score = 25.3 bits (55), Expect = 2.3
 Identities = 4/17 (23%), Positives = 8/17 (47%)

Query: 13 NLTWNTNEPELTPCFES 29
          + +W T + +L     S
Sbjct: 62 SFSWWTTDQQLIQVIRS 78


>2kn4_A Immunoglobulin G-binding protein G, splicing FACT
          arginine/serine-rich 2, S35, splicing factor SC35,; RRM
          domain, cell WALL; NMR {Streptococcus SP}
          Length = 158

 Score = 25.2 bits (55), Expect = 2.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 13 NLTWNTNEPELTPCFE 28
          NLT+ T+   L   FE
Sbjct: 77 NLTYRTSPDTLRRVFE 92


>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain,
          poly(A) site recognition, RNA, nuclear, RNA BIND
          protein; 2.70A {Homo sapiens} PDB: 3p6y_C
          Length = 90

 Score = 24.5 bits (54), Expect = 2.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 13 NLTWNTNEPELTPCFES 29
          NLTW T + +LT    S
Sbjct: 8  NLTWWTTDEDLTEAVHS 24


>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing
          factor, RNA protein complex, SMN, binding protein-RNA
          complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
          Length = 129

 Score = 25.1 bits (55), Expect = 2.6
 Identities = 5/16 (31%), Positives = 7/16 (43%)

Query: 13 NLTWNTNEPELTPCFE 28
           L+  T E +L   F 
Sbjct: 53 GLSLYTTERDLREVFS 68


>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
          CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
          processing, cleavage factor; 2.90A {Homo sapiens} PDB:
          3q2t_C
          Length = 229

 Score = 25.1 bits (54), Expect = 2.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 13 NLTWNTNEPELTPCFES 29
          NLTW T + +LT    S
Sbjct: 75 NLTWWTTDEDLTEAVHS 91


>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain,
          nucleolus, structural protein; NMR {Mesocricetus
          auratus} SCOP: d.58.7.1
          Length = 96

 Score = 24.5 bits (54), Expect = 3.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 13 NLTWNTNEPELTPCFES 29
          NL++N  E EL   FE 
Sbjct: 23 NLSFNITEDELKEVFED 39


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.137    0.483 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,171,497
Number of extensions: 49576
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 10
Length of query: 80
Length of database: 6,701,793
Length adjustment: 49
Effective length of query: 31
Effective length of database: 5,333,664
Effective search space: 165343584
Effective search space used: 165343584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)