BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2814
(176 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|383860592|ref|XP_003705773.1| PREDICTED: TATA-box-binding protein-like [Megachile rotundata]
Length = 241
Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 112/173 (64%), Positives = 143/173 (82%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++G L L QIN+R R SEYNP +F GLIM+I NPR T L F SGKL+ GA+
Sbjct: 69 QNVVSTVNLGTELKLMQINTRTRNSEYNPARFTGLIMRIRNPRATALIFHSGKLVCTGAR 128
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D LA+RKFA+I+++LG P+K+ FKI NIV TCD++FP+KL+ L+H+H QFSSYEP
Sbjct: 129 CEEDSYLATRKFARIIQKLGFPVKFYNFKIQNIVATCDLKFPIKLENLNHIHGQFSSYEP 188
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EL+PGLIYRMV PRVVLLIFVNG+IV+TGAK+R+EL +A +NIYP+LKSF+KQ
Sbjct: 189 ELYPGLIYRMVSPRVVLLIFVNGKIVLTGAKNRTELQDALNNIYPILKSFRKQ 241
>gi|345492218|ref|XP_001603648.2| PREDICTED: TATA-box-binding protein-like [Nasonia vitripennis]
Length = 238
Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 110/173 (63%), Positives = 141/173 (81%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+S+GC L+L IN+R R SEYNP +F GLIM+I NPR T L F+SGKL+ GA+
Sbjct: 66 QNVVSTVSLGCELNLTYINTRTRNSEYNPARFTGLIMRIRNPRVTALIFRSGKLVCTGAR 125
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D LA++KFA+I++++G P+K++ FKI NIV T D++FP+KL+ L H H QFSSYEP
Sbjct: 126 CEEDSFLAAKKFARIIQKIGFPVKFRDFKIQNIVATADLKFPIKLENLSHKHGQFSSYEP 185
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EL+PGLIYRMV PRVVLLIFVNG+IV+TGAK+R EL +A NIYP+LKSF+KQ
Sbjct: 186 ELYPGLIYRMVLPRVVLLIFVNGKIVLTGAKNRQELKDALHNIYPILKSFRKQ 238
>gi|380013265|ref|XP_003690685.1| PREDICTED: TATA-box-binding protein-like [Apis florea]
Length = 241
Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 108/173 (62%), Positives = 140/173 (80%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++G L L IN+R R SEYNP +F GLIM+I NPR T L F SGK++ GA+
Sbjct: 69 QNVVSTVNLGIELPLMYINTRTRNSEYNPARFMGLIMRIRNPRATALIFHSGKIVCTGAR 128
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D LA+RKFA+I+++LG K+ FKI NIV TCD++FP+KL+ L+H+H QFSSYEP
Sbjct: 129 SEEDSYLATRKFARIIQKLGFAAKFYNFKIQNIVATCDLKFPIKLENLNHIHGQFSSYEP 188
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EL+PGLIYRMV PRVVLLIFVNG++V+TGAK+R+EL +A +NIYP+LKSF+KQ
Sbjct: 189 ELYPGLIYRMVSPRVVLLIFVNGKVVLTGAKNRTELQDALNNIYPILKSFRKQ 241
>gi|66498987|ref|XP_394229.2| PREDICTED: TATA-box-binding protein-like [Apis mellifera]
Length = 241
Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 108/173 (62%), Positives = 140/173 (80%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++G L L IN+R R SEYNP +F GLIM+I NPR T L F SGK++ GA+
Sbjct: 69 QNVVSTVNLGIELPLMYINTRTRNSEYNPARFMGLIMRIRNPRATALIFHSGKIVCTGAR 128
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D LA+RKFA+I+++LG K+ FKI NIV TCD++FP+KL+ L+H+H QFSSYEP
Sbjct: 129 SEEDSYLATRKFARIIQKLGFAAKFYNFKIQNIVATCDLKFPIKLENLNHIHGQFSSYEP 188
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EL+PGLIYRMV PRVVLLIFVNG++V+TGAK+R+EL +A +NIYP+LKSF+KQ
Sbjct: 189 ELYPGLIYRMVSPRVVLLIFVNGKVVLTGAKNRTELQDALNNIYPILKSFRKQ 241
>gi|340728982|ref|XP_003402790.1| PREDICTED: TATA-box-binding protein-like [Bombus terrestris]
Length = 241
Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 109/173 (63%), Positives = 141/173 (81%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++G L L IN+R R SEYNP +F GL+M+I NPR T L F SGKL+ GA+
Sbjct: 69 QNVVSTVNLGIQLPLMYINTRTRNSEYNPARFTGLVMRIRNPRATALIFHSGKLVCTGAR 128
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D LA+RKFA+I+++LG +K+ FKI NIV TCD++FP+KL+ L+H+H QFSSYEP
Sbjct: 129 CEEDSFLATRKFARIIQKLGFTVKFYNFKIQNIVATCDLKFPIKLENLNHIHGQFSSYEP 188
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EL+PGLIYRMV PRVVLLIFVNG+IV+TGAK+R+EL +A +NIYP+LKSF+KQ
Sbjct: 189 ELYPGLIYRMVSPRVVLLIFVNGKIVLTGAKNRAELQDALNNIYPILKSFRKQ 241
>gi|350425498|ref|XP_003494140.1| PREDICTED: TATA-box-binding protein-like [Bombus impatiens]
Length = 241
Score = 238 bits (607), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 109/173 (63%), Positives = 140/173 (80%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++G L L IN+R R SEYNP +F GL+M+I NPR T L F SGKL+ GA+
Sbjct: 69 QNVVSTVNLGIELPLMYINTRTRNSEYNPARFTGLVMRIRNPRATALIFHSGKLVCTGAR 128
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D LA+RKFA+I+++LG +K+ FKI NIV TCD++FP+KL+ L+H+H QFSSYEP
Sbjct: 129 CEEDSFLATRKFARIIQKLGFTVKFYNFKIQNIVATCDLKFPIKLENLNHIHGQFSSYEP 188
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EL+PGLIYRMV PRVVLLIFVNG+IV+TGAK+R EL +A +NIYP+LKSF+KQ
Sbjct: 189 ELYPGLIYRMVSPRVVLLIFVNGKIVLTGAKNRVELQDALNNIYPILKSFRKQ 241
>gi|170031575|ref|XP_001843660.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|167870488|gb|EDS33871.1| TATA-box-binding protein [Culex quinquefasciatus]
Length = 236
Score = 238 bits (607), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 106/172 (61%), Positives = 141/172 (81%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N V T+S+GC L+L IN R R SEYNP +FHG++M+I +PR T L F+SGK++ GAK
Sbjct: 64 RNCVATVSLGCELNLQSINFRTRNSEYNPSRFHGVVMRIRDPRCTALVFRSGKIVCTGAK 123
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+EHD LA+RKFA+I++++G+ +K+ FK+ N+V T D+RFPV+L+ L+ VH QFSSYEP
Sbjct: 124 NEHDANLAARKFARIIQKVGYNVKFLEFKVQNLVATVDLRFPVRLENLNQVHGQFSSYEP 183
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKPRVVLLIFVNG+IV TGAKS E+ E+ +NIYP+L+SF+K
Sbjct: 184 ELFPGLIYRMVKPRVVLLIFVNGKIVFTGAKSEWEIRESLENIYPILQSFRK 235
>gi|225719098|gb|ACO15395.1| TATA-box-binding protein [Caligus clemensi]
Length = 323
Score = 235 bits (600), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 105/175 (60%), Positives = 141/175 (80%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+S+GC LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 149 QLQNIVSTVSLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 208
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D +LA+RK+A+I+++LG P +++ FKI N+V +CDV+FP++L+ L HSQFSSY
Sbjct: 209 AKSEEDSRLAARKYARIVQKLGFPARFKDFKIQNMVGSCDVKFPIRLEGLVLTHSQFSSY 268
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMV+PR+VLLIFV+G++V+TGAK R E++EAFDNIYP+LK+FKKQ
Sbjct: 269 EPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILKNFKKQ 323
>gi|383858146|ref|XP_003704563.1| PREDICTED: TATA-box-binding protein-like [Megachile rotundata]
Length = 318
Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 105/175 (60%), Positives = 138/175 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 144 QLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 203
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 204 AKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 263
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E++EAFDNIYP+LKSFKKQ
Sbjct: 264 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILKSFKKQ 318
>gi|340727525|ref|XP_003402092.1| PREDICTED: TATA-box-binding protein-like [Bombus terrestris]
gi|350422935|ref|XP_003493334.1| PREDICTED: TATA-box-binding protein-like [Bombus impatiens]
Length = 314
Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 105/175 (60%), Positives = 138/175 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 140 QLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 199
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 200 AKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 259
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E++EAFDNIYP+LKSFKKQ
Sbjct: 260 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILKSFKKQ 314
>gi|380027888|ref|XP_003697647.1| PREDICTED: TATA-box-binding protein-like [Apis florea]
Length = 319
Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 105/175 (60%), Positives = 138/175 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 145 QLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 204
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 205 AKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 264
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E++EAFDNIYP+LKSFKKQ
Sbjct: 265 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILKSFKKQ 319
>gi|66536790|ref|XP_623088.1| PREDICTED: TATA-box-binding protein-like isoform 1 [Apis mellifera]
Length = 319
Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 105/175 (60%), Positives = 138/175 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 145 QLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 204
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 205 AKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 264
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E++EAFDNIYP+LKSFKKQ
Sbjct: 265 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILKSFKKQ 319
>gi|322801294|gb|EFZ21981.1| hypothetical protein SINV_10030 [Solenopsis invicta]
Length = 306
Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 105/175 (60%), Positives = 139/175 (79%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 132 QLQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 191
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 192 AKSEGDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLSHGQFSSY 251
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R+E++EAFDNIYP+LKSFKKQ
Sbjct: 252 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRTEIYEAFDNIYPILKSFKKQ 306
>gi|123909816|sp|Q1JPY4.1|TBPL2_DANRE RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|94574475|gb|AAI16554.1| TATA box binding protein like 2 [Danio rerio]
gi|182890344|gb|AAI64097.1| Tbpl2 protein [Danio rerio]
Length = 312
Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 102/175 (58%), Positives = 137/175 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ CPLDL I + R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 138 QLQNIVSTVNLACPLDLKSIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 197
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV FP++L+ L H QFSSY
Sbjct: 198 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVCFPIRLEGLVLTHQQFSSY 257
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK F+KQ
Sbjct: 258 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFRKQ 312
>gi|332374462|gb|AEE62372.1| unknown [Dendroctonus ponderosae]
Length = 318
Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 105/175 (60%), Positives = 138/175 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 144 QLQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 203
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L HS FSSY
Sbjct: 204 AKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHSSFSSY 263
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E++EAFDNIYP+LKSFKKQ
Sbjct: 264 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILKSFKKQ 318
>gi|47550887|ref|NP_999961.1| TATA box-binding protein-like protein 2 [Danio rerio]
gi|32765839|gb|AAP87373.1| TATA-binding protein 2 [Danio rerio]
Length = 312
Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 102/175 (58%), Positives = 137/175 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ CPLDL I + R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 138 QLQNIVSTVNLACPLDLKSIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 197
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV FP++L+ L H QFSSY
Sbjct: 198 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVCFPIRLEGLVLTHQQFSSY 257
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK F+KQ
Sbjct: 258 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFRKQ 312
>gi|307204782|gb|EFN83340.1| TATA-box-binding protein [Harpegnathos saltator]
Length = 304
Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 105/175 (60%), Positives = 138/175 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 130 QLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 189
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 190 AKSEADSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLSHGQFSSY 249
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E++EAFDNIYP+LKSFKKQ
Sbjct: 250 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRKEIYEAFDNIYPILKSFKKQ 304
>gi|91081661|ref|XP_969326.1| PREDICTED: similar to DNA-binding protein [Tribolium castaneum]
gi|270006234|gb|EFA02682.1| hypothetical protein TcasGA2_TC008403 [Tribolium castaneum]
Length = 311
Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 105/175 (60%), Positives = 138/175 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 137 QLQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 196
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L HS FSSY
Sbjct: 197 AKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHSSFSSY 256
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E++EAFDNIYP+LKSFKKQ
Sbjct: 257 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKIRQEIYEAFDNIYPILKSFKKQ 311
>gi|346470907|gb|AEO35298.1| hypothetical protein [Amblyomma maculatum]
Length = 309
Score = 232 bits (592), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 105/173 (60%), Positives = 138/173 (79%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 137 QNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 196
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RK+A+I+++LG K+ FKI N+V +CDVRFP++L+ L HSQFSSYEP
Sbjct: 197 SEEQSRLAARKYARIIQKLGFDAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHSQFSSYEP 256
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAFDNIYP+LK F+KQ
Sbjct: 257 ELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRSEIYEAFDNIYPILKGFRKQ 309
>gi|242022166|ref|XP_002431512.1| trf2 protein, putative [Pediculus humanus corporis]
gi|212516806|gb|EEB18774.1| trf2 protein, putative [Pediculus humanus corporis]
Length = 298
Score = 232 bits (592), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 105/175 (60%), Positives = 138/175 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 124 QLQNIVSTVNLGCKLDLKKIAIHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 183
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D +LA+RK+A+I+++LG K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 184 AKSEDDSRLAARKYARIIQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 243
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E++EAFDNIYP+LKSFKKQ
Sbjct: 244 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILKSFKKQ 298
>gi|321473578|gb|EFX84545.1| hypothetical protein DAPPUDRAFT_194512 [Daphnia pulex]
Length = 312
Score = 232 bits (591), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 105/173 (60%), Positives = 139/173 (80%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 140 QNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 199
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LA+RK+A+I+++L P K+ FKI N+V +CDV+FP++L+ L HSQFSSYEP
Sbjct: 200 SEEDSRLAARKYARIVQKLNFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHSQFSSYEP 259
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E+++AFDNIYP+LKSFKKQ
Sbjct: 260 ELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFDNIYPILKSFKKQ 312
>gi|427788157|gb|JAA59530.1| Putative tata-box-binding protein [Rhipicephalus pulchellus]
Length = 308
Score = 232 bits (591), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 105/173 (60%), Positives = 138/173 (79%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 136 QNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 195
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RK+A+I+++LG K+ FKI N+V +CDVRFP++L+ L HSQFSSYEP
Sbjct: 196 SEEQSRLAARKYARIIQKLGFDAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHSQFSSYEP 255
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAFDNIYP+LK F+KQ
Sbjct: 256 ELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRSEIYEAFDNIYPILKGFRKQ 308
>gi|269980507|gb|ACZ56425.1| TATA-binding protein [Litopenaeus vannamei]
Length = 300
Score = 232 bits (591), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 104/175 (59%), Positives = 140/175 (80%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C L+L +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 126 QLQNIVSTVNLSCKLELKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 185
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L HSQFSSY
Sbjct: 186 AKSEQDSRLAARKYARIVQKLGFPAKFMDFKIQNMVGSCDVKFPIRLEGLVLTHSQFSSY 245
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R++++EAFDNIYP+LKSFKKQ
Sbjct: 246 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRNQIYEAFDNIYPILKSFKKQ 300
>gi|307182447|gb|EFN69682.1| TATA-box-binding protein [Camponotus floridanus]
Length = 305
Score = 231 bits (590), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 105/175 (60%), Positives = 138/175 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 131 QLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 190
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 191 AKSEGDSRLAARKYARIIQKLGFPAKFIDFKIQNMVGSCDVKFPIRLEGLVLSHGQFSSY 250
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E++EAFDNIYP+LKSFKKQ
Sbjct: 251 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKIRKEIYEAFDNIYPILKSFKKQ 305
>gi|156392660|ref|XP_001636166.1| predicted protein [Nematostella vectensis]
gi|156223266|gb|EDO44103.1| predicted protein [Nematostella vectensis]
Length = 194
Score = 231 bits (590), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 102/174 (58%), Positives = 138/174 (79%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL +I + R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 20 QLQNIVSTVNLGCKLDLKKIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 79
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E KLA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 80 AKSEEQSKLAARKYARVVQKLGFPAKFTEFKIQNMVGSCDVKFPIRLEGLVLAHGQFSSY 139
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E++EAFDNIYP+LK+F+K
Sbjct: 140 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILKTFRK 193
>gi|332021125|gb|EGI61512.1| TATA-box-binding protein [Acromyrmex echinatior]
Length = 305
Score = 231 bits (590), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 105/175 (60%), Positives = 138/175 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 131 QLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 190
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 191 AKSEGDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLSHGQFSSY 250
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E++EAFDNIYP+LKSFKKQ
Sbjct: 251 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKIRKEIYEAFDNIYPILKSFKKQ 305
>gi|348539536|ref|XP_003457245.1| PREDICTED: TATA box-binding protein-like protein 2-like
[Oreochromis niloticus]
Length = 319
Score = 231 bits (590), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 101/175 (57%), Positives = 138/175 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GCPLDL I + R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 145 QLQNIVSTVNLGCPLDLKFIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 204
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P ++ FKI N+V +CDV FP++L+ L H QFSSY
Sbjct: 205 AKSEEQSRLAARKYARVVQKLGFPARFLEFKIQNMVASCDVCFPIRLEGLVLTHQQFSSY 264
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+KQ
Sbjct: 265 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERAEIYEAFENIYPILKGFRKQ 319
>gi|153792245|ref|NP_001093264.1| TATA box binding protein [Takifugu rubripes]
gi|148910855|tpg|DAA06038.1| TPA_inf: TATA box binding protein [Takifugu rubripes]
Length = 301
Score = 231 bits (589), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 101/174 (58%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 126 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 185
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDVRFP++L+ L H QFSSY
Sbjct: 186 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSY 245
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 246 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 299
>gi|241566250|ref|XP_002402125.1| TATA-box binding protein (TBP), component of TFII-D and TFIIIB,
putative [Ixodes scapularis]
gi|215499985|gb|EEC09479.1| TATA-box binding protein (TBP), component of TFII-D and TFIIIB,
putative [Ixodes scapularis]
Length = 286
Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 104/175 (59%), Positives = 138/175 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 112 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 171
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+I+++LG K+ FKI N+V +CDVRFP++L+ L HSQFSSY
Sbjct: 172 AKSEEQSRLAARKYARIIQKLGFDAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHSQFSSY 231
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R+E++EAFDNIYP+LK F+KQ
Sbjct: 232 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRAEIYEAFDNIYPILKGFRKQ 286
>gi|51948368|ref|NP_001004198.1| TATA-box-binding protein [Rattus norvegicus]
gi|51858685|gb|AAH81939.1| TATA box binding protein [Rattus norvegicus]
gi|149047096|gb|EDL99816.1| TATA box binding protein, isoform CRA_a [Rattus norvegicus]
gi|149047097|gb|EDL99817.1| TATA box binding protein, isoform CRA_a [Rattus norvegicus]
Length = 318
Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 143 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 202
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 203 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 262
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 263 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 316
>gi|402868789|ref|XP_003898470.1| PREDICTED: TATA-box-binding protein isoform 2 [Papio anubis]
Length = 325
Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 150 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 209
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 210 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 269
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 270 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 323
>gi|327262117|ref|XP_003215872.1| PREDICTED: TATA-box-binding protein-like [Anolis carolinensis]
Length = 300
Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 125 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 184
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 185 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 244
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 245 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 298
>gi|157126257|ref|XP_001654561.1| TATA binding protein, putative [Aedes aegypti]
gi|108882533|gb|EAT46758.1| AAEL002079-PA [Aedes aegypti]
Length = 234
Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 102/172 (59%), Positives = 140/172 (81%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N V T+S+GC L+L IN R+R SEYNP +FHG++M+I PR T L F+SGK++ GA+
Sbjct: 62 RNCVATVSLGCELNLQAINFRLRNSEYNPARFHGVVMRIREPRCTALVFRSGKIVCTGAR 121
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+E D LA+RKFA+I+++LG+ +++ FK+ N+V T D+RFP++L+ L+ VH QFSSYEP
Sbjct: 122 NEADAYLAARKFARIIQKLGYSVRFIEFKVQNLVATVDLRFPIRLENLNQVHGQFSSYEP 181
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKPRVVLLIFVNG+IV TGAKS E+ ++ +NIYP+L+SF+K
Sbjct: 182 ELFPGLIYRMVKPRVVLLIFVNGKIVFTGAKSEREVTDSLENIYPILQSFRK 233
>gi|148688513|gb|EDL20460.1| TATA box binding protein, isoform CRA_b [Mus musculus]
Length = 323
Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 148 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 207
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 208 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 267
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 268 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 321
>gi|2052377|gb|AAB53097.1| transcription factor IID [Mus musculus domesticus]
Length = 318
Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 143 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 202
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 203 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 262
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 263 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 316
>gi|1729912|sp|P53361.1|TBP_SPOFR RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|349117|gb|AAA62394.1| DNA-binding protein [Spodoptera frugiperda]
Length = 307
Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 104/175 (59%), Positives = 137/175 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 133 QLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 192
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D +LA+RK+A+I+++LG K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 193 AKSEEDSRLAARKYARIIQKLGFTAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 252
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E++EAFDNIYP+LKSFKKQ
Sbjct: 253 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVREEIYEAFDNIYPILKSFKKQ 307
>gi|172073171|ref|NP_038712.3| TATA-box-binding protein [Mus musculus]
gi|135638|sp|P29037.1|TBP_MOUSE RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|220612|dbj|BAA00840.1| TFIID [Mus musculus]
gi|15215158|gb|AAH12685.1| Tbp protein [Mus musculus]
gi|39754750|gb|AAR30866.1| TATA-binding protein [Mus musculus]
gi|148688512|gb|EDL20459.1| TATA box binding protein, isoform CRA_a [Mus musculus]
gi|148688514|gb|EDL20461.1| TATA box binding protein, isoform CRA_a [Mus musculus]
Length = 316
Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 141 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 200
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 201 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 260
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 261 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 314
>gi|1729911|sp|P53360.1|TBP_MESAU RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|493654|dbj|BAA06287.1| TBP [Mesocricetus auratus]
Length = 318
Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 143 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 202
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 203 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 262
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 263 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 316
>gi|29477183|gb|AAH50136.1| Tbp protein [Mus musculus]
Length = 316
Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/172 (58%), Positives = 137/172 (79%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 143 QNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 202
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYEP
Sbjct: 203 SEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEP 262
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 263 ELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 314
>gi|402868787|ref|XP_003898469.1| PREDICTED: TATA-box-binding protein isoform 1 [Papio anubis]
Length = 335
Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 160 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 219
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 220 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 279
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 280 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 333
>gi|340371811|ref|XP_003384438.1| PREDICTED: TATA-box-binding protein-like [Amphimedon queenslandica]
Length = 291
Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 103/174 (59%), Positives = 139/174 (79%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I +PRTT L F SGK++ G
Sbjct: 116 QLQNIVSTVTLGCKLDLKDIALRARNAEYNPKRFAAVIMRIRDPRTTALVFSSGKMVCTG 175
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L HSQFSSY
Sbjct: 176 AKSEDFSRLAARKYARIIQKLGFPAKFLEFKIQNMVGSCDVKFPIRLEGLVVAHSQFSSY 235
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMV+PR+VLLIFV+G++V+TGAK RS++ EAF+NIYP+LK+FKK
Sbjct: 236 EPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKERSQIIEAFNNIYPILKNFKK 289
>gi|426235063|ref|XP_004011510.1| PREDICTED: TATA-box-binding protein isoform 3 [Ovis aries]
Length = 288
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 113 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 172
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 173 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 232
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 233 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 286
>gi|80474966|gb|AAI09055.1| TBP protein [Homo sapiens]
gi|190691993|gb|ACE87771.1| TATA box binding protein protein [synthetic construct]
gi|254071353|gb|ACT64436.1| TATA box binding protein protein [synthetic construct]
Length = 288
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 113 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 172
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 173 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 232
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 233 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 286
>gi|112983068|ref|NP_001037059.1| TATA-box-binding protein [Bombyx mori]
gi|14423945|sp|O45211.1|TBP_BOMMO RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|3326928|emb|CAA11000.1| TBP [Bombyx mori]
Length = 307
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 104/175 (59%), Positives = 137/175 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 133 QLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 192
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D +LA+RK+A+I+++LG K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 193 AKSEEDSRLAARKYARIIQKLGFTAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 252
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E++EAFDNIYP+LKSFKKQ
Sbjct: 253 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVREEIYEAFDNIYPILKSFKKQ 307
>gi|432114953|gb|ELK36596.1| TATA-box-binding protein [Myotis davidii]
Length = 316
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 141 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 200
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 201 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 260
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 261 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 314
>gi|355723497|gb|AES07910.1| TATA-box binding protein [Mustela putorius furo]
Length = 315
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 141 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 200
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 201 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 260
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 261 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 314
>gi|307206120|gb|EFN84200.1| TATA-box-binding protein [Harpegnathos saltator]
Length = 241
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 103/173 (59%), Positives = 137/173 (79%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V TI + L L IN R R SEYNP +F GL+M+I NPR T L F+SGKL+ GA+
Sbjct: 69 QNVVSTIDLQTELKLMYINVRTRNSEYNPARFTGLVMRIQNPRATALIFRSGKLVCTGAR 128
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E + LA++KFA+I+++LG P+++ F + NIV TCD++FP+KL++L+ +H QFSSYEP
Sbjct: 129 SEDESLLAAKKFARIIQKLGFPVRFTSFTVQNIVATCDLKFPIKLESLNQMHGQFSSYEP 188
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EL+PGL YRM+KPRVVLLIFVNG++VITGAK R +LHEA +IYP+LKSF+KQ
Sbjct: 189 ELYPGLTYRMLKPRVVLLIFVNGKVVITGAKKREDLHEALYHIYPILKSFRKQ 241
>gi|348561403|ref|XP_003466502.1| PREDICTED: TATA-box-binding protein-like [Cavia porcellus]
Length = 321
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 146 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 205
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 206 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 265
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 266 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 319
>gi|395839043|ref|XP_003792412.1| PREDICTED: TATA-box-binding protein [Otolemur garnettii]
Length = 326
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 151 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 210
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 211 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 270
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 271 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 324
>gi|224047784|ref|XP_002190631.1| PREDICTED: TATA-box-binding protein [Taeniopygia guttata]
Length = 302
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 127 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 186
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 187 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 246
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 247 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 300
>gi|224051924|ref|XP_002200431.1| PREDICTED: TATA box-binding protein-like protein 2 [Taeniopygia
guttata]
Length = 322
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 101/174 (58%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 147 QLQNIVSTVNLACKLDLKNIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 206
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDVRFP++L+ L H QFSSY
Sbjct: 207 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSY 266
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGL+YRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+L+ FKK
Sbjct: 267 EPELFPGLVYRMVKPRIVLLIFVSGKVVLTGAKDRSEIYEAFENIYPILRGFKK 320
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QNMVG+ V P+ L + + ++S Y P F GL+ +++ PR L F SGK+++ GA
Sbjct: 239 QNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLVYRMVKPRIVLLIFVSGKVVLTGA 298
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A IL+ P
Sbjct: 299 KDRSEIYEAFENIYPILRGFKKP 321
>gi|357612491|gb|EHJ68026.1| TATA-box-binding protein [Danaus plexippus]
Length = 306
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 104/175 (59%), Positives = 137/175 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 132 QLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 191
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D +LA+RK+A+I+++LG K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 192 AKSEEDSRLAARKYARIIQKLGFTAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 251
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E++EAFDNIYP+LKSFKKQ
Sbjct: 252 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILKSFKKQ 306
>gi|355562211|gb|EHH18843.1| hypothetical protein EGK_15529 [Macaca mulatta]
Length = 326
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 151 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 210
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 211 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 270
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 271 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 324
>gi|126310795|ref|XP_001371815.1| PREDICTED: TATA-box-binding protein-like isoform 1 [Monodelphis
domestica]
Length = 308
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 133 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 192
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 193 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 252
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 253 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 306
>gi|157265563|ref|NP_001098077.1| TATA-box-binding protein [Pan troglodytes]
gi|148910853|tpg|DAA06037.1| TPA_inf: TATA box binding protein [Pan troglodytes]
Length = 336
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 161 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPTRFAAVIMRIREPRTTALIFSSGKMVCTG 220
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 221 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 280
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 281 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 334
>gi|45384144|ref|NP_990434.1| TATA-box-binding protein [Gallus gallus]
gi|3122919|sp|O13270.1|TBP_CHICK RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|2145309|dbj|BAA20296.1| TBP0 [Gallus gallus]
gi|2145310|dbj|BAA20297.1| TBP1 [Gallus gallus]
gi|2145320|dbj|BAA20298.1| TBP [Gallus gallus]
Length = 302
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 127 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 186
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 187 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 246
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 247 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 300
>gi|326915583|ref|XP_003204094.1| PREDICTED: TATA-box-binding protein-like [Meleagris gallopavo]
Length = 303
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 128 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 187
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 188 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 247
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 248 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 301
>gi|38680348|gb|AAR26545.1| TATA-binding protein [Gallus gallus]
Length = 302
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 127 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 186
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 187 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 246
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 247 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 300
>gi|432852539|ref|XP_004067298.1| PREDICTED: TATA-box-binding protein [Oryzias latipes]
Length = 305
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 130 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 189
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 190 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 249
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 250 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 303
>gi|74095979|ref|NP_001027845.1| TATA box-binding protein-like protein 2 [Takifugu rubripes]
gi|82127187|sp|Q6SJ94.1|TBPL2_FUGRU RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|38569213|gb|AAR24283.1| TBP-related factor 3 [Takifugu rubripes]
gi|148910851|tpg|DAA06036.1| TPA_inf: TATA box binding protein-like 2 [Takifugu rubripes]
Length = 322
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/173 (57%), Positives = 138/173 (79%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GCPLDL I + R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 150 QNIVSTVNLGCPLDLKFIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 209
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RK+A+++++LG P ++ FKI N+V +CDV FP++L+ L H QFSSYEP
Sbjct: 210 SEEQSRLAARKYARVVQKLGFPARFMDFKIQNMVASCDVCFPIRLEGLVLTHQQFSSYEP 269
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+L+ F+KQ
Sbjct: 270 ELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERAEIYEAFENIYPILRGFRKQ 322
>gi|3122948|sp|Q92146.1|TBP_TRIGA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|808897|dbj|BAA06554.1| TATA-box binding protein [Trimeresurus gramineus]
gi|1483197|dbj|BAA06560.1| TATA-box binding protein [Trimeresurus gramineus]
Length = 302
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 127 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 186
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 187 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 246
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R E++EAF+NIYP+LK F+K
Sbjct: 247 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILKGFRK 300
>gi|354486300|ref|XP_003505319.1| PREDICTED: TATA-box-binding protein-like [Cricetulus griseus]
gi|344249386|gb|EGW05490.1| TATA-box-binding protein [Cricetulus griseus]
Length = 315
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 140 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 199
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 200 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 259
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 260 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 313
>gi|3122947|sp|Q92117.1|TBP_TRIFL RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|1483195|dbj|BAA06555.1| TATA-box binding protein [Trimeresurus flavoviridis]
Length = 300
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 125 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 184
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 185 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 244
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R E++EAF+NIYP+LK F+K
Sbjct: 245 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILKGFRK 298
>gi|426355239|ref|XP_004045036.1| PREDICTED: TATA-box-binding protein isoform 2 [Gorilla gorilla
gorilla]
Length = 311
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 136 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 195
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 196 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 255
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 256 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 309
>gi|403305888|ref|XP_003943481.1| PREDICTED: TATA-box-binding protein [Saimiri boliviensis
boliviensis]
Length = 326
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 151 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 210
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 211 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 270
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 271 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 324
>gi|397502106|ref|XP_003821709.1| PREDICTED: TATA-box-binding protein isoform 2 [Pan paniscus]
Length = 312
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 137 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 196
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 197 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 256
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 257 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 310
>gi|285026520|ref|NP_001165556.1| TATA-box-binding protein isoform 2 [Homo sapiens]
Length = 319
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 144 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 203
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 204 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 263
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 264 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 317
>gi|281351746|gb|EFB27330.1| hypothetical protein PANDA_014728 [Ailuropoda melanoleuca]
Length = 308
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 133 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 192
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 193 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 252
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 253 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 306
>gi|38492542|pdb|1NVP|A Chain A, Human TfiiaTBPDNA COMPLEX
Length = 181
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 6 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 65
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 66 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 125
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 126 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 179
>gi|291414592|ref|XP_002723543.1| PREDICTED: TATA box binding protein [Oryctolagus cuniculus]
Length = 323
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 148 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 207
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 208 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 267
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 268 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 321
>gi|54696180|gb|AAV38462.1| TATA box binding protein [synthetic construct]
Length = 337
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 161 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 220
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 221 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 280
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 281 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 334
>gi|297679683|ref|XP_002817654.1| PREDICTED: TATA-box-binding protein [Pongo abelii]
Length = 327
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 152 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 211
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 212 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 271
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 272 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 325
>gi|344306713|ref|XP_003422029.1| PREDICTED: TATA-box-binding protein-like [Loxodonta africana]
Length = 324
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 149 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 208
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 209 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 268
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 269 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 322
>gi|426355237|ref|XP_004045035.1| PREDICTED: TATA-box-binding protein isoform 1 [Gorilla gorilla
gorilla]
Length = 331
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 156 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 215
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 216 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 275
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 276 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 329
>gi|80478871|gb|AAI09054.1| TATA box binding protein [Homo sapiens]
gi|82571689|gb|AAI10342.1| TATA box binding protein [Homo sapiens]
gi|119567803|gb|EAW47418.1| TATA box binding protein, isoform CRA_a [Homo sapiens]
gi|119567804|gb|EAW47419.1| TATA box binding protein, isoform CRA_a [Homo sapiens]
gi|190689691|gb|ACE86620.1| TATA box binding protein protein [synthetic construct]
gi|190691053|gb|ACE87301.1| TATA box binding protein protein [synthetic construct]
Length = 338
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 163 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 222
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 223 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 282
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 283 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 336
>gi|37066|emb|CAA38736.1| TFIID [Homo sapiens]
gi|227072|prf||1613451A TATA binding factor TFIID
Length = 335
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 160 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 219
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 220 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 279
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 280 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 333
>gi|4507379|ref|NP_003185.1| TATA-box-binding protein isoform 1 [Homo sapiens]
gi|1351223|sp|P20226.2|TBP_HUMAN RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|339492|gb|AAA36731.1| TATA-box binding protein [Homo sapiens]
gi|48145669|emb|CAG33057.1| TBP [Homo sapiens]
Length = 339
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 164 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 223
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 224 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 283
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 284 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 337
>gi|397502104|ref|XP_003821708.1| PREDICTED: TATA-box-binding protein isoform 1 [Pan paniscus]
Length = 332
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 157 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 216
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 217 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 276
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 277 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 330
>gi|332264009|ref|XP_003281041.1| PREDICTED: TATA-box-binding protein [Nomascus leucogenys]
Length = 328
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 153 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 212
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 213 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 272
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 273 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 326
>gi|296199650|ref|XP_002747248.1| PREDICTED: TATA-box-binding protein [Callithrix jacchus]
Length = 333
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 158 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 217
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 218 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 277
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 278 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 331
>gi|194390034|dbj|BAG60533.1| unnamed protein product [Homo sapiens]
Length = 316
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 141 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 200
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 201 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 260
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 261 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 314
>gi|149743967|ref|XP_001499379.1| PREDICTED: TATA-box-binding protein-like isoform 1 [Equus caballus]
Length = 329
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 154 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 213
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 214 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 273
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 274 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 327
>gi|47214810|emb|CAF89637.1| unnamed protein product [Tetraodon nigroviridis]
Length = 309
Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/175 (57%), Positives = 138/175 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GCPLDL I + R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 135 QLQNIVSTVNLGCPLDLKFIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 194
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P ++ FKI N+V +CDV FP++L+ L H QFSSY
Sbjct: 195 AKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVASCDVCFPIRLEGLVLTHQQFSSY 254
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+L+ F+KQ
Sbjct: 255 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERAEIYEAFENIYPILRGFRKQ 309
>gi|1582692|prf||2119243A TATA box-binding protein
Length = 338
Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 163 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 222
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 223 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 282
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 283 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 336
>gi|301779702|ref|XP_002925261.1| PREDICTED: TATA-box-binding protein-like [Ailuropoda melanoleuca]
Length = 324
Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 149 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 208
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 209 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 268
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 269 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 322
>gi|73973822|ref|XP_854525.1| PREDICTED: TATA-box-binding protein isoform 1 [Canis lupus
familiaris]
Length = 324
Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 149 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 208
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 209 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 268
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 269 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 322
>gi|1827869|pdb|1TGH|A Chain A, Tata Binding Protein (Tbp)DNA COMPLEX
Length = 185
Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 10 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 69
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 70 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 129
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 130 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 183
>gi|62859883|ref|NP_001017309.1| TATA box-binding protein-like protein 2 [Xenopus (Silurana)
tropicalis]
gi|123915918|sp|Q28DH2.1|TBPL2_XENTR RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; Short=xTBPL2; AltName:
Full=TATA box-binding protein-related factor 3;
Short=TBP-related factor 3
gi|89274001|emb|CAJ81377.1| Novel protein similar to TBP [Xenopus (Silurana) tropicalis]
Length = 322
Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 102/174 (58%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 147 QLQNIVSTVNLACKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 206
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDVRFP++L+ L H QFSSY
Sbjct: 207 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSY 266
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK FKK
Sbjct: 267 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 320
>gi|1942827|pdb|1CDW|A Chain A, Human Tbp Core Domain Complexed With Dna
Length = 179
Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 138/174 (79%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 6 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 65
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E + +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 66 AKSEENSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 125
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 126 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 179
>gi|17298076|dbj|BAB78512.1| TATA-box binding protein [Oryzias latipes]
Length = 320
Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 145 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 204
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 205 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 264
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 265 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 318
>gi|109073359|ref|XP_001085368.1| PREDICTED: TATA-box-binding protein isoform 3 [Macaca mulatta]
gi|75075688|sp|Q4R4F5.1|TBP_MACFA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|67968013|dbj|BAE00488.1| unnamed protein product [Macaca fascicularis]
gi|67971336|dbj|BAE02010.1| unnamed protein product [Macaca fascicularis]
gi|355749048|gb|EHH53531.1| hypothetical protein EGM_14191 [Macaca fascicularis]
Length = 326
Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 151 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 210
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 211 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 270
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 271 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 324
>gi|115496234|ref|NP_001069210.1| TATA-box-binding protein [Bos taurus]
gi|119367391|sp|Q2HJ52.1|TBP_BOVIN RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|87578225|gb|AAI13309.1| TATA box binding protein [Bos taurus]
Length = 319
Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 144 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 203
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 204 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 263
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 264 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 317
>gi|426235061|ref|XP_004011509.1| PREDICTED: TATA-box-binding protein isoform 2 [Ovis aries]
Length = 306
Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 131 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 190
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 191 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 250
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 251 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 304
>gi|426235059|ref|XP_004011508.1| PREDICTED: TATA-box-binding protein isoform 1 [Ovis aries]
Length = 314
Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 139 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 198
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 199 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 258
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 259 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 312
>gi|147906485|ref|NP_001089038.1| TATA box binding protein [Xenopus laevis]
gi|57032530|gb|AAH88819.1| LOC503680 protein [Xenopus laevis]
Length = 296
Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 121 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 180
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 181 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 240
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 241 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 294
>gi|440894479|gb|ELR46921.1| TATA-box-binding protein [Bos grunniens mutus]
Length = 312
Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 137 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 196
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 197 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 256
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 257 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 310
>gi|26351419|dbj|BAC39346.1| unnamed protein product [Mus musculus]
Length = 316
Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 141 QLQNIVSTVNLGCKLDLKTIALRPRNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 200
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 201 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 260
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 261 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 314
>gi|194388082|dbj|BAG65425.1| unnamed protein product [Homo sapiens]
Length = 318
Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 143 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 202
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 203 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 262
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 263 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 316
>gi|147900802|ref|NP_001084369.1| TATA-box-binding protein [Xenopus laevis]
gi|135642|sp|P27633.1|TBP_XENLA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|65149|emb|CAA46832.1| transcription factor [Xenopus laevis]
gi|76779674|gb|AAI06645.1| TFIIDtau protein [Xenopus laevis]
Length = 297
Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 122 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 181
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 182 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 241
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 242 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 295
>gi|6980708|pdb|1C9B|B Chain B, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980710|pdb|1C9B|F Chain F, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980712|pdb|1C9B|J Chain J, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980714|pdb|1C9B|N Chain N, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980716|pdb|1C9B|R Chain R, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
Length = 180
Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 7 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 66
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 67 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 126
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 127 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 180
>gi|291190590|ref|NP_001167145.1| TATA-box-binding protein [Salmo salar]
gi|223648344|gb|ACN10930.1| TATA-box-binding protein [Salmo salar]
Length = 299
Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 124 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 183
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 184 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 243
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R E++EAF+NIYP+LK F+K
Sbjct: 244 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILKGFRK 297
>gi|345309405|ref|XP_003428833.1| PREDICTED: LOW QUALITY PROTEIN: TATA-box-binding protein-like
[Ornithorhynchus anatinus]
Length = 308
Score = 229 bits (583), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 133 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 192
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 193 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 252
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF NIYP+LK F+K
Sbjct: 253 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFQNIYPILKGFRK 306
>gi|41056135|ref|NP_956390.1| TATA-box-binding protein [Danio rerio]
gi|82187626|sp|Q7SXL3.1|TBP_DANRE RecName: Full=TATA-box-binding protein; Short=zTBP; AltName:
Full=TATA sequence-binding protein; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
Short=zfTBF; AltName: Full=Transcription initiation
factor TFIID TBP subunit
gi|33416871|gb|AAH55549.1| TATA box binding protein [Danio rerio]
gi|37727187|gb|AAO34524.1| TATA-binding protein [Danio rerio]
gi|41351472|gb|AAH65860.1| TATA box binding protein [Danio rerio]
Length = 302
Score = 229 bits (583), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 127 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 186
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 187 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 246
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R E++EAF+NIYP+LK F+K
Sbjct: 247 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILKGFRK 300
>gi|15826400|pdb|1JFI|C Chain C, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex
Length = 185
Score = 229 bits (583), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 10 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 69
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 70 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 129
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 130 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 183
>gi|33323635|gb|AAQ07596.1|AF503449_1 TATA-binding protein [Danio rerio]
Length = 302
Score = 229 bits (583), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 127 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVGTG 186
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 187 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 246
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R E++EAF+NIYP+LK F+K
Sbjct: 247 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILKGFRK 300
>gi|348534076|ref|XP_003454529.1| PREDICTED: TATA-box-binding protein-like [Oreochromis niloticus]
Length = 333
Score = 229 bits (583), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 158 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 217
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 218 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 277
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R E++EAF+NIYP+LK F+K
Sbjct: 278 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILKGFRK 331
>gi|147902539|ref|NP_001080921.1| TATA box-binding protein-like protein 2 [Xenopus laevis]
gi|75570954|sp|Q5UE94.1|TBPL2_XENLA RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|54402365|gb|AAV34742.1| TATA-binding protein 2 [Xenopus laevis]
Length = 320
Score = 229 bits (583), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 102/174 (58%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 145 QLQNIVSTVNLACKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 204
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDVRFP++L+ L H QFSSY
Sbjct: 205 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSY 264
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK FKK
Sbjct: 265 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 318
>gi|62858635|ref|NP_001016339.1| TATA-box-binding protein [Xenopus (Silurana) tropicalis]
gi|123907365|sp|Q28GG8.1|TBP_XENTR RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|89266978|emb|CAJ83650.1| TATA box binding protein [Xenopus (Silurana) tropicalis]
gi|169642632|gb|AAI60510.1| TATA box binding protein [Xenopus (Silurana) tropicalis]
gi|213624491|gb|AAI71176.1| TATA box binding protein [Xenopus (Silurana) tropicalis]
gi|213627356|gb|AAI71174.1| TATA box binding protein [Xenopus (Silurana) tropicalis]
Length = 297
Score = 229 bits (583), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 122 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 181
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 182 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 241
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 242 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 295
>gi|189236649|ref|XP_969256.2| PREDICTED: similar to TATA-box-binding protein [Tribolium
castaneum]
Length = 236
Score = 229 bits (583), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 104/173 (60%), Positives = 135/173 (78%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN V T+ + LDL IN+R R SEYNP +FHGLIM++ +PRTT L FQ+GK++ GAK
Sbjct: 64 QNCVTTVDLNTKLDLALINARTRNSEYNPARFHGLIMRLRDPRTTALIFQTGKIVCTGAK 123
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D LAS+KFA+I+++LG IK+ FKI N+V TCD+RFP+KL++L +H QF SYEP
Sbjct: 124 SEQDALLASKKFARIIQKLGFDIKFDNFKIQNLVATCDLRFPIKLESLSLLHGQFCSYEP 183
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPG+IYRM+KP + LLIFVNG+IV TG+KSR + E+ DNIYP+L+SFKK
Sbjct: 184 ELFPGIIYRMIKPHLCLLIFVNGKIVFTGSKSREGIKESLDNIYPILRSFKKN 236
>gi|270005208|gb|EFA01656.1| hypothetical protein TcasGA2_TC007228 [Tribolium castaneum]
Length = 238
Score = 229 bits (583), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 104/173 (60%), Positives = 135/173 (78%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN V T+ + LDL IN+R R SEYNP +FHGLIM++ +PRTT L FQ+GK++ GAK
Sbjct: 66 QNCVTTVDLNTKLDLALINARTRNSEYNPARFHGLIMRLRDPRTTALIFQTGKIVCTGAK 125
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D LAS+KFA+I+++LG IK+ FKI N+V TCD+RFP+KL++L +H QF SYEP
Sbjct: 126 SEQDALLASKKFARIIQKLGFDIKFDNFKIQNLVATCDLRFPIKLESLSLLHGQFCSYEP 185
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPG+IYRM+KP + LLIFVNG+IV TG+KSR + E+ DNIYP+L+SFKK
Sbjct: 186 ELFPGIIYRMIKPHLCLLIFVNGKIVFTGSKSREGIKESLDNIYPILRSFKKN 238
>gi|315418834|gb|ADU15470.1| TATA box binding protein [Penaeus monodon]
Length = 300
Score = 228 bits (582), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 103/175 (58%), Positives = 139/175 (79%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C L+L +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 126 QLQNIVSTVNLSCKLELKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 185
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L HSQFSSY
Sbjct: 186 AKSEQDSRLAARKYARIVQKLGFPAKFMDFKIQNMVGSCDVKFPIRLEGLVLTHSQFSSY 245
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMVKPR+VLLIFV+ ++V+TGAK R++++EAFDNIYP+LKSFKKQ
Sbjct: 246 EPELFPGLIYRMVKPRIVLLIFVSRKVVLTGAKVRNQIYEAFDNIYPILKSFKKQ 300
>gi|2897847|gb|AAC03409.1| transcription factor IID [Homo sapiens]
Length = 339
Score = 228 bits (582), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 164 QLQNIVSTVNLGCKLDLKTIALRRRNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 223
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 224 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 283
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 284 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 337
>gi|164429967|gb|ABY55311.1| TATA-binding protein 1 [Gallus gallus]
Length = 302
Score = 228 bits (582), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 99/174 (56%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EY+P +F +IM+I PRTT L F SGK++ G
Sbjct: 127 QLQNIVSTVNLGCKLDLKTIALRARNAEYDPKRFAAVIMRIREPRTTALIFSSGKMVCTG 186
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 187 AKSEEQSRLAARKYARVVRKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 246
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 247 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 300
>gi|226088558|dbj|BAH37024.1| TATA-box binding protein [Oryzias latipes]
Length = 305
Score = 228 bits (580), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 99/174 (56%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 130 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 189
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ KI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 190 AKSEEQSRLAARKYARVVQKLGFPAKFLDLKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 249
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 250 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 303
>gi|426376979|ref|XP_004055257.1| PREDICTED: TATA box-binding protein-like protein 2 [Gorilla gorilla
gorilla]
Length = 375
Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I + + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 201 QLQNIVSTVNLACKLDLKKIALQAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 260
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSY
Sbjct: 261 AKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSY 320
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK FKK
Sbjct: 321 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 374
>gi|39725630|tpg|DAA02137.1| TPA_exp: TBP-related factor 3 [Xenopus laevis]
Length = 320
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 101/174 (58%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 145 QLQNIVSTVNLACKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 204
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDVRFP++L+ L H QF+SY
Sbjct: 205 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFNSY 264
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK FKK
Sbjct: 265 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 318
>gi|170044283|ref|XP_001849783.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|170067801|ref|XP_001868625.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|167863845|gb|EDS27228.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|167867494|gb|EDS30877.1| TATA-box-binding protein [Culex quinquefasciatus]
Length = 322
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 102/173 (58%), Positives = 137/173 (79%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 150 QNIVSTVNLSCRLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 209
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LA+RK+A+I+++LG K+ FK+ N+V +CDVRFP++L+ L H +FSSYEP
Sbjct: 210 SEEDSRLAARKYARIIQKLGFTAKFLDFKVQNMVGSCDVRFPIRLEGLVLTHGKFSSYEP 269
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E+++AFDNIYP+LKSFKKQ
Sbjct: 270 ELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFDNIYPILKSFKKQ 322
>gi|157167852|ref|XP_001662432.1| tata-box binding protein [Aedes aegypti]
gi|108871290|gb|EAT35515.1| AAEL012330-PA [Aedes aegypti]
Length = 319
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 102/173 (58%), Positives = 137/173 (79%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 147 QNIVSTVNLSCRLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 206
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LA+RK+A+I+++LG K+ FK+ N+V +CDVRFP++L+ L H +FSSYEP
Sbjct: 207 SEEDSRLAARKYARIIQKLGFTAKFLDFKVQNMVGSCDVRFPIRLEGLVLTHGKFSSYEP 266
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E+++AFDNIYP+LKSFKKQ
Sbjct: 267 ELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFDNIYPILKSFKKQ 319
>gi|326921220|ref|XP_003206860.1| PREDICTED: TATA box-binding protein-like protein 2-like [Meleagris
gallopavo]
Length = 328
Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 101/174 (58%), Positives = 135/174 (77%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 153 QLQNIVSTVNLACKLDLKNIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 212
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDVRFP++L+ L H QFSSY
Sbjct: 213 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSY 272
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+L+ FKK
Sbjct: 273 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILRGFKK 326
>gi|54696182|gb|AAV38463.1| TATA box binding protein [Homo sapiens]
Length = 336
Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 99/174 (56%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 161 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 220
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ H QFSSY
Sbjct: 221 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGPVLTHQQFSSY 280
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 281 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 334
>gi|193620436|ref|XP_001949590.1| PREDICTED: TATA-box-binding protein-like [Acyrthosiphon pisum]
Length = 298
Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 101/174 (58%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R +E+NP +F +IM+I PRTT L F SGK++ G
Sbjct: 124 QLQNIVSTVNLGCRLDLKTIALHARNAEFNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 183
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D +LA+RK+A+I+++L P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 184 AKSEEDSRLAARKYARIIQKLSFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 243
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E+++A+DNIYP+LKSFKK
Sbjct: 244 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAYDNIYPILKSFKK 297
>gi|291241110|ref|XP_002740460.1| PREDICTED: TATA box binding protein-like [Saccoglossus kowalevskii]
Length = 293
Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 101/172 (58%), Positives = 137/172 (79%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 120 QNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 179
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYEP
Sbjct: 180 SEDFSRLAARKYARVIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 239
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E++EAF+NIYP+LK+FKK
Sbjct: 240 ELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRKEIYEAFENIYPILKAFKK 291
>gi|332237163|ref|XP_003267773.1| PREDICTED: LOW QUALITY PROTEIN: TATA box-binding protein-like
protein 2 [Nomascus leucogenys]
Length = 379
Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 205 QLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 264
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSY
Sbjct: 265 AKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSY 324
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK FKK
Sbjct: 325 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 378
>gi|39930602|ref|NP_950248.1| TATA box-binding protein-like protein 2 [Homo sapiens]
gi|74749326|sp|Q6SJ96.1|TBPL2_HUMAN RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|38569209|gb|AAR24281.1| TBP-related factor 3 [Homo sapiens]
gi|90296776|gb|ABD93323.1| TATA box binding protein like 2 [Homo sapiens]
Length = 375
Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 201 QLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 260
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSY
Sbjct: 261 AKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSY 320
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK FKK
Sbjct: 321 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 374
>gi|109658498|gb|AAI17186.1| TATA box binding protein like 2 [Homo sapiens]
gi|109658806|gb|AAI17160.1| TATA box binding protein like 2 [Homo sapiens]
gi|313883330|gb|ADR83151.1| TATA box binding protein like 2 [synthetic construct]
Length = 375
Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 201 QLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 260
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSY
Sbjct: 261 AKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSY 320
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK FKK
Sbjct: 321 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 374
>gi|397523415|ref|XP_003831727.1| PREDICTED: TATA box-binding protein-like protein 2 [Pan paniscus]
gi|410048302|ref|XP_003952543.1| PREDICTED: TATA box binding protein like 2 [Pan troglodytes]
Length = 375
Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 201 QLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 260
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSY
Sbjct: 261 AKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSY 320
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK FKK
Sbjct: 321 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 374
>gi|119601081|gb|EAW80675.1| TATA box binding protein like 2, isoform CRA_a [Homo sapiens]
Length = 307
Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 133 QLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 192
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSY
Sbjct: 193 AKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSY 252
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK FKK
Sbjct: 253 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 306
>gi|332018160|gb|EGI58766.1| TATA-box-binding protein [Acromyrmex echinatior]
Length = 240
Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 102/173 (58%), Positives = 134/173 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ L L IN R R SEYNP +F GLIM+I NPR T L F+SGKL+ GA+
Sbjct: 68 QNVVSTVNLQTELKLMYINVRTRNSEYNPARFTGLIMRIQNPRATALIFRSGKLVCTGAR 127
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D LA++KFA+I+++LG P+K+ FKI NIV TCD++FP+KL+ L+ H QFSSYEP
Sbjct: 128 SEQDSFLAAKKFARIIQKLGFPVKFSSFKIQNIVATCDLKFPIKLEILYQCHGQFSSYEP 187
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EL+PGL YRM PRVVLLIFVNG++V+TGAK+R+EL +A + IYP LK ++KQ
Sbjct: 188 ELYPGLTYRMYSPRVVLLIFVNGKVVLTGAKNRTELQDALNIIYPTLKMYRKQ 240
>gi|196007384|ref|XP_002113558.1| TATA-binding protein [Trichoplax adhaerens]
gi|190583962|gb|EDV24032.1| TATA-binding protein [Trichoplax adhaerens]
Length = 203
Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 99/174 (56%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC L+L +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 29 QLQNIVSTVNLGCRLELQRIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 88
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ F+I N+V +CDV+FP++L+ L H QFSSY
Sbjct: 89 AKSEEQSRLAARKYARVIQKLGFPAKFTEFRIQNMVGSCDVKFPIRLEGLVLAHGQFSSY 148
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E++EAFDNIYP+LK F+K
Sbjct: 149 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRDEIYEAFDNIYPILKGFRK 202
>gi|355778612|gb|EHH63648.1| hypothetical protein EGM_16656 [Macaca fascicularis]
Length = 376
Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 202 QLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 261
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSY
Sbjct: 262 AKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSY 321
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK FKK
Sbjct: 322 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 375
>gi|109083719|ref|XP_001088740.1| PREDICTED: TATA box-binding protein-like protein 2-like [Macaca
mulatta]
Length = 376
Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 202 QLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 261
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSY
Sbjct: 262 AKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSY 321
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK FKK
Sbjct: 322 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 375
>gi|149642959|ref|NP_001092323.1| TATA box-binding protein-like protein 2 [Gallus gallus]
gi|148910849|tpg|DAA06035.1| TPA_inf: TATA box binding protein-like 2 [Gallus gallus]
Length = 328
Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 101/174 (58%), Positives = 135/174 (77%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 153 QLQNIVSTVNLACKLDLKNIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 212
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDVRFP++L+ L H QFSSY
Sbjct: 213 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSY 272
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+L+ FKK
Sbjct: 273 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILRGFKK 326
>gi|312382984|gb|EFR28233.1| hypothetical protein AND_04068 [Anopheles darlingi]
Length = 327
Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 101/173 (58%), Positives = 137/173 (79%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 155 QNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 214
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LA+RK+A+I+++LG K+ FK+ N+V +CDVRFP++L+ L H +FSSYEP
Sbjct: 215 SEEDSRLAARKYARIIQKLGFTAKFLDFKVQNMVGSCDVRFPIRLEGLVLTHGRFSSYEP 274
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E+++AF+NIYP+LKSFKKQ
Sbjct: 275 ELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFENIYPILKSFKKQ 327
>gi|402876253|ref|XP_003901890.1| PREDICTED: TATA box-binding protein-like protein 2 [Papio anubis]
Length = 376
Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 202 QLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 261
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSY
Sbjct: 262 AKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSY 321
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK FKK
Sbjct: 322 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 375
>gi|344273811|ref|XP_003408712.1| PREDICTED: TATA box-binding protein-like protein 2-like [Loxodonta
africana]
Length = 344
Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 100/172 (58%), Positives = 136/172 (79%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 172 QNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 231
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSYEP
Sbjct: 232 SEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEP 291
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK FKK
Sbjct: 292 ELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 343
>gi|391336328|ref|XP_003742533.1| PREDICTED: TATA-box-binding protein-like [Metaseiulus occidentalis]
Length = 295
Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 103/172 (59%), Positives = 137/172 (79%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL +I + R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 123 QNIVSTVNLGCRLDLKKIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 182
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RK+A+I+++LG K+ FKI N+V +CDVRFP++L+ L H QFSSYEP
Sbjct: 183 SEDQSRLAARKYARIVQKLGFEAKFLDFKIQNMVGSCDVRFPIRLEGLVLTHCQFSSYEP 242
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAFDNIYP+LK F+K
Sbjct: 243 ELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRSEIYEAFDNIYPILKGFRK 294
>gi|229577173|ref|NP_001153317.1| TATA binding protein [Nasonia vitripennis]
Length = 306
Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 102/175 (58%), Positives = 137/175 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ LDL +I R +E+ P +F +IM+I PRTT L F SGK++ G
Sbjct: 132 QVQNIVSTVNLNGKLDLKKIALHARNAEFIPKRFAAVIMRIREPRTTALIFSSGKMVCTG 191
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H+QFSSY
Sbjct: 192 AKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHAQFSSY 251
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E++EAFDNIYP+LKSFKKQ
Sbjct: 252 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYEAFDNIYPILKSFKKQ 306
>gi|355693296|gb|EHH27899.1| hypothetical protein EGK_18211 [Macaca mulatta]
Length = 376
Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 202 QLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 261
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSY
Sbjct: 262 AKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSY 321
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK FKK
Sbjct: 322 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 375
>gi|335309027|ref|XP_003361466.1| PREDICTED: TATA-box-binding protein [Sus scrofa]
Length = 326
Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 99/171 (57%), Positives = 136/171 (79%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 154 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 213
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYEPE
Sbjct: 214 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 273
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
LFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 274 LFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 324
>gi|322802013|gb|EFZ22550.1| hypothetical protein SINV_10179 [Solenopsis invicta]
Length = 158
Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 101/156 (64%), Positives = 129/156 (82%)
Query: 21 INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 80
IN R R SEYNP +F GLIM+I NPR T L F+SGKL+ GA+ E D LA++KFA+I++
Sbjct: 3 INVRTRNSEYNPARFTGLIMRIQNPRATALIFRSGKLVCTGARSEEDSLLAAKKFARIIQ 62
Query: 81 QLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVL 140
+LG P+K+ FKI NIV TCD++FP+KLD L+ +H QFSSYEPEL+PGL YRMV PRVVL
Sbjct: 63 KLGFPVKFTCFKIQNIVATCDLKFPIKLDNLNQMHGQFSSYEPELYPGLTYRMVLPRVVL 122
Query: 141 LIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
LIFVNG++V+TGAK+R+EL +A +NIYP+LKSF+KQ
Sbjct: 123 LIFVNGKVVLTGAKNRTELQDALNNIYPILKSFRKQ 158
>gi|158287840|ref|XP_309748.2| AGAP010958-PA [Anopheles gambiae str. PEST]
gi|157019382|gb|EAA45305.2| AGAP010958-PA [Anopheles gambiae str. PEST]
Length = 323
Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 101/173 (58%), Positives = 137/173 (79%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 151 QNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 210
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LA+RK+A+I+++LG K+ FK+ N+V +CDVRFP++L+ L H +FSSYEP
Sbjct: 211 SEDDSRLAARKYARIIQKLGFTAKFLDFKVQNMVGSCDVRFPIRLEGLVLTHGRFSSYEP 270
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E+++AF+NIYP+LKSFKKQ
Sbjct: 271 ELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFENIYPILKSFKKQ 323
>gi|395535316|ref|XP_003769674.1| PREDICTED: TATA-box-binding protein [Sarcophilus harrisii]
Length = 309
Score = 225 bits (574), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 100/175 (57%), Positives = 137/175 (78%), Gaps = 1/175 (0%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 133 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 192
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF-SS 120
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QF SS
Sbjct: 193 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSS 252
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 253 YEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 307
>gi|126282854|ref|XP_001376601.1| PREDICTED: TATA box-binding protein-like protein 2-like
[Monodelphis domestica]
Length = 342
Score = 225 bits (574), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 100/172 (58%), Positives = 137/172 (79%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 170 QNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 229
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RKFA+++++LG P ++ FKI N+V +CDVRFP++L++L H QFSSYEP
Sbjct: 230 SEELSRLAARKFARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLESLVLTHQQFSSYEP 289
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGL+YRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK FKK
Sbjct: 290 ELFPGLVYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 341
>gi|207345821|gb|EDZ72518.1| YER148Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 240
Score = 225 bits (573), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 68 QNIVATVTLGCRLDLKTVALHARNAEYNPSRFAAVIMRIREPKTTALIFASGKMVVTGAK 127
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 128 SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 187
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 188 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 239
>gi|62528966|gb|AAX84779.1| TATA-binding protein [Hydractinia echinata]
Length = 227
Score = 225 bits (573), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 99/174 (56%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I S R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 53 QLQNIVSTVNLSCKLDLKKIASHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 112
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI NIV +CDV+FP++L+ L HSQF SY
Sbjct: 113 AKSEEQSRLAARKYARVIQKLGFPAKFVDFKIQNIVGSCDVKFPIRLEGLVLAHSQFCSY 172
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKP++VLLIFV+G++V+TGAK RSE++EAF++IYP+L+ F+K
Sbjct: 173 EPELFPGLIYRMVKPKIVLLIFVSGKVVLTGAKVRSEIYEAFESIYPILRGFRK 226
>gi|348168341|gb|AEP68421.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168347|gb|AEP68424.1| TATA-binding protein [Saccharomyces cerevisiae]
Length = 240
Score = 224 bits (572), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 68 QNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 127
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 128 SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 187
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 188 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 239
>gi|37726742|gb|AAO34521.1| TATA-binding protein [Eptatretus stoutii]
Length = 324
Score = 224 bits (572), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 149 QLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 208
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 209 AKSEDQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 268
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R+E++EAFDNIYP+LK F+K
Sbjct: 269 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRTEIYEAFDNIYPILKGFRK 322
>gi|242014208|ref|XP_002427783.1| trf2 protein, putative [Pediculus humanus corporis]
gi|212512252|gb|EEB15045.1| trf2 protein, putative [Pediculus humanus corporis]
Length = 231
Score = 224 bits (572), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 101/176 (57%), Positives = 139/176 (78%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V T+++ LDL +IN R +EYNP +F GL+M+I P+TT L F+SGK+++
Sbjct: 56 ITLQNVVATVNLMNELDLRKINFCTRNTEYNPSRFKGLVMRIREPKTTALIFRSGKIVVT 115
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GAK E LA+RK+A+I+++LG IK+ FKI NIV TCDVRFP+KL++L+ +H QFSS
Sbjct: 116 GAKSEDAALLAARKYARIIQKLGFSIKFCSFKIQNIVGTCDVRFPIKLESLNQIHGQFSS 175
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YEPELFP LIYR+VKPRVVLLIFVNG+IV+TGA+++ ++ EA D + P+LKSF+KQ
Sbjct: 176 YEPELFPALIYRLVKPRVVLLIFVNGKIVLTGARTQQDIQEALDIMLPILKSFRKQ 231
>gi|37726730|gb|AAO34516.1| TATA-binding protein isoform 1 [Branchiostoma floridae]
gi|37726734|gb|AAO34519.1| TATA-binding protein isoform 3 [Branchiostoma floridae]
Length = 331
Score = 224 bits (572), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 99/174 (56%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL +I R +EYNP +F +IM+I +PRTT L F SGK++ G
Sbjct: 156 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRDPRTTALIFSSGKMVCTG 215
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H+QFSSY
Sbjct: 216 AKSEDQSRLAARKYARVVQKLGFPCKFLDFKIQNMVGSCDVKFPIRLEGLVLTHAQFSSY 275
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E++EAF+ IYP+LK F+K
Sbjct: 276 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVREEIYEAFETIYPILKGFRK 329
>gi|348168359|gb|AEP68430.1| TATA-binding protein [Saccharomyces cerevisiae]
Length = 240
Score = 224 bits (572), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 68 QNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 127
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 128 SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 187
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 188 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 239
>gi|37726732|gb|AAO34517.1| TATA-binding protein isoform 2 [Branchiostoma floridae]
Length = 329
Score = 224 bits (572), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 99/174 (56%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL +I R +EYNP +F +IM+I +PRTT L F SGK++ G
Sbjct: 154 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRDPRTTALIFSSGKMVCTG 213
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H+QFSSY
Sbjct: 214 AKSEDQSRLAARKYARVVQKLGFPCKFLDFKIQNMVGSCDVKFPIRLEGLVLTHAQFSSY 273
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E++EAF+ IYP+LK F+K
Sbjct: 274 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVREEIYEAFETIYPILKGFRK 327
>gi|348168231|gb|AEP68366.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168233|gb|AEP68367.1| TATA-binding protein [Saccharomyces cerevisiae]
Length = 240
Score = 224 bits (572), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 68 QNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 127
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 128 SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 187
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 188 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 239
>gi|172899|gb|AAA35146.1| tata-box factor protein [Saccharomyces cerevisiae]
Length = 240
Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 68 QNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 127
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 128 SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 187
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 188 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 239
>gi|17298080|dbj|BAB78514.1| TATA-box binding protein [Ephydatia fluviatilis]
Length = 281
Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 102/172 (59%), Positives = 138/172 (80%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL +I R +EYNP +F +IM+I +PRTT L F SGK++ GAK
Sbjct: 109 QNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRDPRTTALVFSSGKMVCTGAK 168
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RK+A+I+++LG P ++ FKI N+V +CDV+FP++L+ L HSQFSSYEP
Sbjct: 169 SEDLSRLAARKYARIIQKLGFPARFMEFKIQNMVGSCDVKFPIRLEGLVVQHSQFSSYEP 228
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R+E+ EAF NIYP+LK+FKK
Sbjct: 229 ELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERTEIIEAFHNIYPILKNFKK 280
>gi|398364911|ref|NP_011075.3| Spt15p [Saccharomyces cerevisiae S288c]
gi|135643|sp|P13393.3|TBP_YEAST RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription factor D; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|73535263|pdb|1RM1|A Chain A, Structure Of A Yeast TfiiaTBPTATA-Box Dna Complex
gi|4610|emb|CAA34751.1| unnamed protein product [Saccharomyces cerevisiae]
gi|171132|gb|AAA34458.1| TATA box factor [Saccharomyces cerevisiae]
gi|172901|gb|AAA35147.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|603388|gb|AAB64675.1| Spt15p: TATA-box binding protein tfIId [Saccharomyces cerevisiae]
gi|151944866|gb|EDN63125.1| TBP [Saccharomyces cerevisiae YJM789]
gi|190405707|gb|EDV08974.1| TATA-box binding protein [Saccharomyces cerevisiae RM11-1a]
gi|256272072|gb|EEU07084.1| Spt15p [Saccharomyces cerevisiae JAY291]
gi|259146076|emb|CAY79336.1| Spt15p [Saccharomyces cerevisiae EC1118]
gi|285811781|tpg|DAA07809.1| TPA: Spt15p [Saccharomyces cerevisiae S288c]
gi|323309314|gb|EGA62532.1| Spt15p [Saccharomyces cerevisiae FostersO]
gi|323333807|gb|EGA75198.1| Spt15p [Saccharomyces cerevisiae AWRI796]
gi|323337848|gb|EGA79088.1| Spt15p [Saccharomyces cerevisiae Vin13]
gi|323348846|gb|EGA83084.1| Spt15p [Saccharomyces cerevisiae Lalvin QA23]
gi|323355333|gb|EGA87158.1| Spt15p [Saccharomyces cerevisiae VL3]
gi|348168207|gb|AEP68354.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168209|gb|AEP68355.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168211|gb|AEP68356.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168213|gb|AEP68357.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168215|gb|AEP68358.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168217|gb|AEP68359.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168219|gb|AEP68360.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168221|gb|AEP68361.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168223|gb|AEP68362.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168225|gb|AEP68363.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168227|gb|AEP68364.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168229|gb|AEP68365.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168235|gb|AEP68368.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168237|gb|AEP68369.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168239|gb|AEP68370.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168241|gb|AEP68371.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168243|gb|AEP68372.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168245|gb|AEP68373.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168247|gb|AEP68374.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168249|gb|AEP68375.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168251|gb|AEP68376.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168253|gb|AEP68377.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168255|gb|AEP68378.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168257|gb|AEP68379.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168259|gb|AEP68380.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168261|gb|AEP68381.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168263|gb|AEP68382.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168265|gb|AEP68383.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168267|gb|AEP68384.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168269|gb|AEP68385.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168271|gb|AEP68386.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168273|gb|AEP68387.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168275|gb|AEP68388.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168277|gb|AEP68389.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168279|gb|AEP68390.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168281|gb|AEP68391.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168283|gb|AEP68392.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168285|gb|AEP68393.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168287|gb|AEP68394.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168289|gb|AEP68395.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168291|gb|AEP68396.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168293|gb|AEP68397.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168295|gb|AEP68398.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168297|gb|AEP68399.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168299|gb|AEP68400.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168301|gb|AEP68401.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168303|gb|AEP68402.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168305|gb|AEP68403.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168307|gb|AEP68404.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168309|gb|AEP68405.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168311|gb|AEP68406.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168313|gb|AEP68407.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168315|gb|AEP68408.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168317|gb|AEP68409.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168319|gb|AEP68410.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168321|gb|AEP68411.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168323|gb|AEP68412.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168325|gb|AEP68413.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168327|gb|AEP68414.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168329|gb|AEP68415.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168331|gb|AEP68416.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168333|gb|AEP68417.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168335|gb|AEP68418.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168337|gb|AEP68419.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168339|gb|AEP68420.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168343|gb|AEP68422.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168345|gb|AEP68423.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168349|gb|AEP68425.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168351|gb|AEP68426.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168353|gb|AEP68427.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168355|gb|AEP68428.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168357|gb|AEP68429.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168361|gb|AEP68431.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168363|gb|AEP68432.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168365|gb|AEP68433.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168367|gb|AEP68434.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168369|gb|AEP68435.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168371|gb|AEP68436.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|349577810|dbj|GAA22978.1| K7_Spt15p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765929|gb|EHN07432.1| Spt15p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299852|gb|EIW10944.1| Spt15p [Saccharomyces cerevisiae CEN.PK113-7D]
gi|226502|prf||1515352A transcription initiation factor TFIID
Length = 240
Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 68 QNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 127
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 128 SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 187
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 188 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 239
>gi|444728605|gb|ELW69055.1| TATA box-binding protein-like protein 2 [Tupaia chinensis]
Length = 378
Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 100/172 (58%), Positives = 136/172 (79%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 206 QNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 265
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSYEP
Sbjct: 266 SEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEP 325
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK FKK
Sbjct: 326 ELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKVFKK 377
>gi|37726863|gb|AAO34522.1| TATA-binding protein [Ginglymostoma cirratum]
Length = 302
Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 98/174 (56%), Positives = 135/174 (77%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +E P +F +IM+I PRTT L F SGK++ G
Sbjct: 127 QLQNIVSTVNLGCKLDLKTIALRARNAEKKPKRFAAVIMRIREPRTTALIFSSGKMVCTG 186
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 187 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 246
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 247 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 300
>gi|366987133|ref|XP_003673333.1| hypothetical protein NCAS_0A03870 [Naumovozyma castellii CBS 4309]
gi|342299196|emb|CCC66945.1| hypothetical protein NCAS_0A03870 [Naumovozyma castellii CBS 4309]
Length = 252
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 80 QNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 139
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 140 SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 199
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 200 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 251
>gi|156846828|ref|XP_001646300.1| hypothetical protein Kpol_1032p36 [Vanderwaltozyma polyspora DSM
70294]
gi|156116975|gb|EDO18442.1| hypothetical protein Kpol_1032p36 [Vanderwaltozyma polyspora DSM
70294]
Length = 251
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 79 QNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 138
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 139 SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 198
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 199 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 250
>gi|357612499|gb|EHJ68033.1| putative TATA binding protein [Danaus plexippus]
Length = 283
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 98/175 (56%), Positives = 139/175 (79%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +QN + T+S+ C L+L I R R+SEYNP +F+G++MKIL PR T L F+SGK++
Sbjct: 108 IKFQNCISTVSLDCELNLLDIYCRTRFSEYNPARFNGVVMKILEPRATALVFRSGKIVCT 167
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GAK+ HD +A+RKFA+I+++LG P+K+ FK+ N + T D+RFP+KL+AL H QF+S
Sbjct: 168 GAKNGHDSYIAARKFARIIQKLGFPVKFVDFKVLNFLATADLRFPIKLEALQQAHGQFTS 227
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPELF GL+YRM++PRVVLLIFVNG++VITGAK+ E++EA D I+P+L+S+KK
Sbjct: 228 YEPELFSGLVYRMIRPRVVLLIFVNGKMVITGAKTNQEVYEAVDIIHPILRSYKK 282
>gi|125984322|ref|XP_001355925.1| GA20441 [Drosophila pseudoobscura pseudoobscura]
gi|195172938|ref|XP_002027252.1| GL24756 [Drosophila persimilis]
gi|54644243|gb|EAL32984.1| GA20441 [Drosophila pseudoobscura pseudoobscura]
gi|194113089|gb|EDW35132.1| GL24756 [Drosophila persimilis]
Length = 220
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 100/172 (58%), Positives = 135/172 (78%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T SV C LDL INSR R SEY+P +F G+IM++ +PR T L F++GK++ GA+
Sbjct: 48 QNIVATFSVNCELDLKTINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKIICTGAR 107
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+E D + SRKFA+IL++LG P+K+ +K+ NIV T D+RFP++L+ L+ VH QFSSYEP
Sbjct: 108 NERDADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNQVHGQFSSYEP 167
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
E+FPGLIYRMVKPR+VLLIFVNG++V TGAKSR ++ + D I P+L SF+K
Sbjct: 168 EMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDIMDCLDAISPILLSFRK 219
>gi|297479762|ref|XP_002690959.1| PREDICTED: TATA box binding protein like 2 [Bos taurus]
gi|296483126|tpg|DAA25241.1| TPA: TATA box binding protein like 2-like [Bos taurus]
Length = 341
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 98/174 (56%), Positives = 134/174 (77%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 167 QLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 226
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P ++ F I N+V +CDVRFP+ L+ L H QFSSY
Sbjct: 227 AKSEEQSRLAARKYARVVQKLGFPARFLDFTIQNMVASCDVRFPISLEGLVLTHQQFSSY 286
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RS+++EAF+NIYP+LK FKK
Sbjct: 287 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKKRSDIYEAFENIYPILKGFKK 340
>gi|365761010|gb|EHN02687.1| Spt15p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401842615|gb|EJT44751.1| SPT15-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 240
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 68 QNIVATVTLGCRLDLKTVALHARNAEYNPRRFAAVIMRIREPKTTALIFASGKMVVTGAK 127
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 128 SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 187
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 188 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 239
>gi|351714662|gb|EHB17581.1| TATA-box-binding protein [Heterocephalus glaber]
Length = 300
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 98/174 (56%), Positives = 134/174 (77%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 125 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 184
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 185 AKSEEQSSRLARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 244
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 245 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 298
>gi|401625996|gb|EJS43965.1| spt15p [Saccharomyces arboricola H-6]
Length = 240
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 68 QNIVATVTLGCRLDLKTVALHARNAEYNPRRFAAVIMRIREPKTTALIFASGKMVVTGAK 127
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 128 SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 187
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 188 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 239
>gi|410076168|ref|XP_003955666.1| hypothetical protein KAFR_0B02330 [Kazachstania africana CBS 2517]
gi|372462249|emb|CCF56531.1| hypothetical protein KAFR_0B02330 [Kazachstania africana CBS 2517]
Length = 230
Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 58 QNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 117
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 118 SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 177
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 178 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 229
>gi|194670970|ref|XP_871896.3| PREDICTED: TATA box binding protein like 2 [Bos taurus]
Length = 377
Score = 223 bits (569), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 98/174 (56%), Positives = 134/174 (77%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 203 QLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 262
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P ++ F I N+V +CDVRFP+ L+ L H QFSSY
Sbjct: 263 AKSEEQSRLAARKYARVVQKLGFPARFLDFTIQNMVASCDVRFPISLEGLVLTHQQFSSY 322
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RS+++EAF+NIYP+LK FKK
Sbjct: 323 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKKRSDIYEAFENIYPILKGFKK 376
>gi|449667471|ref|XP_002160884.2| PREDICTED: TATA-box-binding protein-like isoform 1 [Hydra
magnipapillata]
Length = 255
Score = 223 bits (569), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 99/174 (56%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 81 QLQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 140
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI NIV +CDV+FP++L+ L HSQF SY
Sbjct: 141 AKSEEQSRLAARKYARVIQKLGFPAKFVDFKIQNIVGSCDVKFPIRLEGLVLAHSQFCSY 200
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF++IYP+L+ F+K
Sbjct: 201 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRSEIYEAFESIYPILRGFRK 254
>gi|323305296|gb|EGA59043.1| Spt15p [Saccharomyces cerevisiae FostersB]
Length = 240
Score = 223 bits (569), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL + R +EYNP F +IM+I P+TT L F SGK+++ GAK
Sbjct: 68 QNIVATVTLGCRLDLKTVALHARNAEYNPKXFAAVIMRIREPKTTALIFASGKMVVTGAK 127
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 128 SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 187
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 188 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 239
>gi|440897977|gb|ELR49561.1| TATA box-binding protein-like protein 2, partial [Bos grunniens
mutus]
Length = 374
Score = 223 bits (569), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 98/174 (56%), Positives = 134/174 (77%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 200 QLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 259
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P ++ F I N+V +CDVRFP+ L+ L H QFSSY
Sbjct: 260 AKSEEQSRLAARKYARVVQKLGFPARFLDFTIQNMVASCDVRFPISLEGLVLTHQQFSSY 319
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RS+++EAF+NIYP+LK FKK
Sbjct: 320 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKKRSDIYEAFENIYPILKGFKK 373
>gi|444316966|ref|XP_004179140.1| hypothetical protein TBLA_0B08050 [Tetrapisispora blattae CBS 6284]
gi|387512180|emb|CCH59621.1| hypothetical protein TBLA_0B08050 [Tetrapisispora blattae CBS 6284]
Length = 242
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 70 QNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 129
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 130 SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 189
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 190 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 241
>gi|426234189|ref|XP_004011082.1| PREDICTED: TATA box-binding protein-like protein 2 [Ovis aries]
Length = 443
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 98/174 (56%), Positives = 134/174 (77%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 269 QLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 328
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P ++ F I N+V +CDVRFP+ L+ L H QFSSY
Sbjct: 329 AKSEEQSRLAARKYARVVQKLGFPARFLDFTIQNMVASCDVRFPISLEGLVLTHQQFSSY 388
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RS+++EAF+NIYP+LK FKK
Sbjct: 389 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKKRSDIYEAFENIYPILKGFKK 442
>gi|254586113|ref|XP_002498624.1| ZYRO0G14806p [Zygosaccharomyces rouxii]
gi|238941518|emb|CAR29691.1| ZYRO0G14806p [Zygosaccharomyces rouxii]
Length = 239
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 67 QNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 126
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 127 SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 186
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 187 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 238
>gi|50290217|ref|XP_447540.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526850|emb|CAG60477.1| unnamed protein product [Candida glabrata]
Length = 233
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 61 QNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 120
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 121 SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 180
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 181 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 232
>gi|443688559|gb|ELT91221.1| hypothetical protein CAPTEDRAFT_209597 [Capitella teleta]
Length = 209
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 102/175 (58%), Positives = 136/175 (77%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C L+L +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 35 QLQNIVCTVNMACKLELKRIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 94
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E KLA+RK+A+I+++LG K+ FKI N+V +CDV+FP++L+ L HSQFSSY
Sbjct: 95 AKSEDQAKLAARKYARIVQKLGFEAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHSQFSSY 154
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E++EAF+NIYP+LK FKKQ
Sbjct: 155 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILKGFKKQ 209
>gi|291403917|ref|XP_002718356.1| PREDICTED: TATA box binding protein like 2-like [Oryctolagus
cuniculus]
Length = 345
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 100/175 (57%), Positives = 137/175 (78%), Gaps = 1/175 (0%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 170 QLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 229
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF-SS 120
AK E +LA+RK+A+++++LG+P ++ FKI N+V +CDVRFP++L+ L H QF SS
Sbjct: 230 AKSEEQSRLAARKYARVVQKLGYPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSS 289
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK FKK
Sbjct: 290 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 344
>gi|297695161|ref|XP_002824816.1| PREDICTED: TATA box-binding protein-like protein 2 [Pongo abelii]
Length = 375
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 99/174 (56%), Positives = 135/174 (77%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 201 QLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 260
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P ++ FKI N+V +CDVRF ++L+ L H QFSSY
Sbjct: 261 AKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFSIRLEGLVLTHQQFSSY 320
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK FKK
Sbjct: 321 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 374
>gi|348573495|ref|XP_003472526.1| PREDICTED: TATA box-binding protein-like protein 2-like [Cavia
porcellus]
Length = 397
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 223 QLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 282
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P ++ FKI N+V +CDVRF ++L+ L H QFSSY
Sbjct: 283 AKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFSIRLEGLVLTHQQFSSY 342
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LKSFKK
Sbjct: 343 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKSFKK 396
>gi|494632|pdb|1TBP|A Chain A, Crystal Structure Of Yeast Tata-Binding Protein And Model
For Interaction With Dna
gi|494633|pdb|1TBP|B Chain B, Crystal Structure Of Yeast Tata-Binding Protein And Model
For Interaction With Dna
Length = 180
Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 8 QNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 67
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 68 SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 127
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 128 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 179
>gi|999660|pdb|1YTB|A Chain A, Crystal Structure Of A Yeast TbpTATA-Box Complex
gi|999661|pdb|1YTB|B Chain B, Crystal Structure Of A Yeast TbpTATA-Box Complex
gi|1633307|pdb|1YTF|A Chain A, Yeast TfiiaTBPDNA COMPLEX
gi|5822424|pdb|1TBA|B Chain B, Solution Structure Of A Tbp-Tafii230 Complex: Protein
Mimicry Of The Minor Groove Surface Of The Tata Box
Unwound By Tbp, Nmr, 25 Structures
gi|29726664|pdb|1NGM|A Chain A, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
gi|29726668|pdb|1NGM|E Chain E, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
gi|29726672|pdb|1NGM|I Chain I, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
gi|29726676|pdb|1NGM|M Chain M, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
gi|38492530|pdb|1NH2|A Chain A, Crystal Structure Of A Yeast TfiiaTBPDNA COMPLEX
Length = 180
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 8 QNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 67
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 68 SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 127
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 128 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 179
>gi|403216725|emb|CCK71221.1| hypothetical protein KNAG_0G01630 [Kazachstania naganishii CBS
8797]
Length = 255
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 83 QNIVATVNLGCRLDLKTVALHARNAEYNPRRFAAVIMRIREPKTTALIFASGKMVVTGAK 142
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 143 SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 202
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 203 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 254
>gi|365987133|ref|XP_003670398.1| hypothetical protein NDAI_0E03380 [Naumovozyma dairenensis CBS 421]
gi|343769168|emb|CCD25155.1| hypothetical protein NDAI_0E03380 [Naumovozyma dairenensis CBS 421]
Length = 264
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 92 QNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 151
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 152 SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 211
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 212 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 263
>gi|157265561|ref|NP_001098076.1| TATA box-binding protein-like protein 2 [Pan troglodytes]
gi|166987366|sp|A6H907.1|TBPL2_PANTR RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|148910843|tpg|DAA06032.1| TPA_inf: TATA box binding protein-like 2 [Pan troglodytes]
Length = 376
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 97/174 (55%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 201 QLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 260
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 261 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 320
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 321 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 374
>gi|37726728|gb|AAO34515.1| TATA-binding protein [Petromyzon marinus]
Length = 292
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 99/174 (56%), Positives = 135/174 (77%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 117 QLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 176
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 177 AKSEDQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 236
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E++EAF+NIYP+LK F+K
Sbjct: 237 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILKGFRK 290
>gi|390333257|ref|XP_795391.3| PREDICTED: TATA-box-binding protein-like [Strongylocentrotus
purpuratus]
Length = 262
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 100/172 (58%), Positives = 136/172 (79%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 89 QNIVSTVNLNCRLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 148
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LA+RK+A+++++LG K+ FKI N+V +CDV+FP++L+ L H QFSSYEP
Sbjct: 149 SEDDSRLAARKYARVVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 208
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E+++AF+NIYP+LKSFKK
Sbjct: 209 ELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFNNIYPILKSFKK 260
>gi|20799106|dbj|BAB92075.1| TATA binding protein [Hemicentrotus pulcherrimus]
Length = 250
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 75 QLQNIVSTVNLNCRLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 134
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D +LA+RK+A+++++LG K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 135 AKSEDDSRLAARKYARVVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 194
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E+++AF+NIYP+LKSFKK
Sbjct: 195 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFNNIYPILKSFKK 248
>gi|339251280|ref|XP_003373123.1| TATA-box-binding protein [Trichinella spiralis]
gi|316968993|gb|EFV53163.1| TATA-box-binding protein [Trichinella spiralis]
Length = 260
Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 136/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL QI + R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 86 QLQNIVSTVNLGCKLDLKQIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 145
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+I+++LG K+ FK+ N+V +CDVRFP++L++ HSQFS+Y
Sbjct: 146 AKSEDLSRLAARKYARIVQKLGFDAKFMDFKVQNMVGSCDVRFPIQLESFCLTHSQFSAY 205
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPRVVLLIFV+G++VITGAK + ++ EAF +IYP+LKSF+K
Sbjct: 206 EPELFPGLIYRMVKPRVVLLIFVSGKVVITGAKEKRDIDEAFTSIYPILKSFRK 259
>gi|431895824|gb|ELK05242.1| TATA box-binding protein-like protein 2 [Pteropus alecto]
Length = 342
Score = 222 bits (566), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 99/174 (56%), Positives = 134/174 (77%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T ++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 168 QLQNIVSTANLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 227
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P ++ FKI N+V +CDVRF ++L+ L H QFSSY
Sbjct: 228 AKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFSIRLEGLVLTHQQFSSY 287
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK FKK
Sbjct: 288 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 341
>gi|17298078|dbj|BAB78513.1| TATA-box binding protein [Lethenteron reissneri]
Length = 301
Score = 222 bits (566), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 99/174 (56%), Positives = 135/174 (77%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 126 QLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 185
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 186 AKSEDQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 245
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E++EAF+NIYP+LK F+K
Sbjct: 246 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILKGFRK 299
>gi|335280289|ref|XP_001924325.3| PREDICTED: TATA box-binding protein-like protein 2-like [Sus
scrofa]
Length = 379
Score = 222 bits (566), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 98/174 (56%), Positives = 135/174 (77%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I + +EYNP + +IM+I PRTT L F SGK++ G
Sbjct: 205 QLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRLAAVIMRIREPRTTALIFSSGKMVCTG 264
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LASRK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H +FSSY
Sbjct: 265 AKSEEQSRLASRKYARVVQKLGFPARFLNFKIQNMVGSCDVRFPIRLEGLVLTHPEFSSY 324
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKP++VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK FKK
Sbjct: 325 EPELFPGLIYRMVKPQIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKDFKK 378
>gi|3122921|sp|O17488.1|TBP_ARTSF RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|2623958|emb|CAA05488.1| TATA-binding protein [Artemia franciscana]
Length = 275
Score = 222 bits (566), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 100/172 (58%), Positives = 137/172 (79%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+++GC LDL +I + R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 104 ENIVSTVNLGCRLDLKKIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 163
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LA+RK+A+I+++LG K+ FKI N+V +CDV+FP++L+ L H QFSSYEP
Sbjct: 164 SEEDSRLAARKYARIVQKLGFSAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 223
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E+++AF+NIYP+LK FKK
Sbjct: 224 ELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFENIYPILKGFKK 275
>gi|194863019|ref|XP_001970236.1| GG10512 [Drosophila erecta]
gi|190662103|gb|EDV59295.1| GG10512 [Drosophila erecta]
Length = 224
Score = 222 bits (566), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 99/175 (56%), Positives = 137/175 (78%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V T SV C LDL INSR R SEY+P +F G+IM++ +PR T L F++GK++
Sbjct: 49 IRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKIICT 108
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GA++E + + SRKFA+IL++LG P+K+ +K+ NIV T D+RFP++L+ L+HVH QFSS
Sbjct: 109 GARNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNHVHGQFSS 168
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPE+FPGLIYRMVKPR+VLLIFVNG++V TGAKSR ++ + + I P+L SF+K
Sbjct: 169 YEPEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDIMDCLEAISPILLSFRK 223
>gi|367010504|ref|XP_003679753.1| hypothetical protein TDEL_0B04130 [Torulaspora delbrueckii]
gi|359747411|emb|CCE90542.1| hypothetical protein TDEL_0B04130 [Torulaspora delbrueckii]
Length = 235
Score = 222 bits (566), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 63 QNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 122
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 123 SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 182
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLL+FV+G++V+TGAK R E+++AF+ IYPVL F+K
Sbjct: 183 ELFPGLIYRMVKPKIVLLVFVSGKVVLTGAKQREEIYQAFEAIYPVLSEFRK 234
>gi|149039452|gb|EDL93672.1| rCG45623 [Rattus norvegicus]
Length = 190
Score = 222 bits (565), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 96/174 (55%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T ++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 16 QLQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKVVCTG 75
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E + +LA+RK+A+++++LG P+++ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 76 AKSEDESRLAARKYARVVQKLGFPVRFFNFKIQNMVASCDVKFPIRLEILALTHRQFSSY 135
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIY+MVKP+VVLLIF +G++V+TGAK RSE++EAF+N+YP+L+SFKK
Sbjct: 136 EPELFPGLIYKMVKPQVVLLIFASGKVVLTGAKERSEIYEAFENMYPILESFKK 189
>gi|146415198|ref|XP_001483569.1| TATA-box binding protein [Meyerozyma guilliermondii ATCC 6260]
gi|146392042|gb|EDK40200.1| TATA-box binding protein [Meyerozyma guilliermondii ATCC 6260]
Length = 240
Score = 222 bits (565), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 100/172 (58%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 68 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 127
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 128 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 187
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+GRIV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 188 ELFPGLIYRMVKPKIVLLIFVSGRIVLTGAKQREEIYDAFEAIYPVLSEFRK 239
>gi|17136834|ref|NP_476939.1| TBP-related factor [Drosophila melanogaster]
gi|25091428|sp|Q27896.1|TRF_DROME RecName: Full=TBP-related factor
gi|11136|emb|CAA50185.1| TBP-related factor [Drosophila melanogaster]
gi|11138|emb|CAA50186.1| TBP-related factor [Drosophila melanogaster]
gi|7297339|gb|AAF52600.1| TBP-related factor [Drosophila melanogaster]
gi|21711771|gb|AAM75076.1| RE61442p [Drosophila melanogaster]
gi|220942420|gb|ACL83753.1| Trf-PA [synthetic construct]
gi|220955718|gb|ACL90402.1| Trf-PA [synthetic construct]
gi|445085|prf||1908393A TATA-binding protein-related factor
Length = 224
Score = 222 bits (565), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 99/175 (56%), Positives = 137/175 (78%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V T SV C LDL INSR R SEY+P +F G+IM++ +PR T L F++GK++
Sbjct: 49 IRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKVICT 108
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GA++E + + SRKFA+IL++LG P+K+ +K+ NIV T D+RFP++L+ L+HVH QFSS
Sbjct: 109 GARNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNHVHGQFSS 168
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPE+FPGLIYRMVKPR+VLLIFVNG++V TGAKSR ++ + + I P+L SF+K
Sbjct: 169 YEPEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDIMDCLEAISPILLSFRK 223
>gi|366997981|ref|XP_003683727.1| hypothetical protein TPHA_0A02110 [Tetrapisispora phaffii CBS 4417]
gi|357522022|emb|CCE61293.1| hypothetical protein TPHA_0A02110 [Tetrapisispora phaffii CBS 4417]
Length = 244
Score = 222 bits (565), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL + R +E+NP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 72 QNIVATVNLGCRLDLKTVALHARNAEFNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 131
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 132 SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 191
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLL+FV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 192 ELFPGLIYRMVKPKIVLLVFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 243
>gi|353234891|emb|CCA66911.1| probable TATA-box-binding factor TBP [Piriformospora indica DSM
11827]
Length = 297
Score = 222 bits (565), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 99/172 (57%), Positives = 135/172 (78%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++G LDL I R +EYNP +F +IM+I P+TT L F SG++++ GAK
Sbjct: 125 QNIVATVNLGTRLDLKTIAMHARNAEYNPKRFAAVIMRIREPKTTALIFASGQMVVTGAK 184
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ LH+ H +FSSYEP
Sbjct: 185 SEDDSRLASRKYARIIQKLGFDAKFTEFKIQNIVGSCDVKFPIRLEGLHYGHGKFSSYEP 244
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP+VVLLIFV+G+IV+TGAK R E++ AF+ IYPVL+ FKK
Sbjct: 245 ELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNVIYPVLREFKK 296
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L ++ ++S Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 215 QNIVGSCDVKFPIRLEGLHYGHGKFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGA 274
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L++ P
Sbjct: 275 KVREEIYTAFNVIYPVLREFKKP 297
>gi|332374320|gb|AEE62301.1| unknown [Dendroctonus ponderosae]
Length = 243
Score = 222 bits (565), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 96/173 (55%), Positives = 139/173 (80%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN V T+ + L+L IN++ R +E+NP +FHGLIM+I P+TT L F+SGK++ GA+
Sbjct: 71 QNCVATVDMHTTLNLQLINAKTRNTEFNPQRFHGLIMRIREPKTTALIFRSGKIVCTGAR 130
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+E D +AS+KFA+++++LG IK+ FK+ N+V TCD++FP+KL+ L+H+H QFSSYEP
Sbjct: 131 NEFDALIASKKFARVIQKLGFHIKFANFKVQNLVATCDLKFPIKLENLNHMHGQFSSYEP 190
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGL+YRM+KP++VLLIFVNG+IV TG KSR ++ EA +NI+P+L+SF+K
Sbjct: 191 ELFPGLVYRMIKPKIVLLIFVNGKIVFTGGKSREDIKEALENIHPILRSFRKN 243
>gi|255719850|ref|XP_002556205.1| KLTH0H07502p [Lachancea thermotolerans]
gi|238942171|emb|CAR30343.1| KLTH0H07502p [Lachancea thermotolerans CBS 6340]
Length = 230
Score = 222 bits (565), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL + R +EYNP +F +IM+I P+TT L F SGK++++GAK
Sbjct: 58 QNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVIGAK 117
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 118 SEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 177
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 178 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 229
>gi|149248310|ref|XP_001528542.1| TATA-box binding protein [Lodderomyces elongisporus NRRL YB-4239]
gi|146448496|gb|EDK42884.1| TATA-box binding protein [Lodderomyces elongisporus NRRL YB-4239]
Length = 248
Score = 221 bits (564), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 132/173 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 76 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 135
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 136 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 195
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E++ AF+ IYPVL F+K
Sbjct: 196 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEFRKS 248
>gi|449016069|dbj|BAM79471.1| TATA-box binding protein [Cyanidioschyzon merolae strain 10D]
Length = 260
Score = 221 bits (564), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 96/176 (54%), Positives = 138/176 (78%), Gaps = 1/176 (0%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V ++++ CPLDL I R R +EYNP +F +IM+I +PRTT L F SGK++I
Sbjct: 43 VRLQNVVASVNLLCPLDLRHIAMRARNAEYNPQRFAAVIMRIRDPRTTALIFSSGKVVIT 102
Query: 61 GAKHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GA+ E D +LA+RK+AKI+++LG+ +K F++HN+V + DVRFP++L+AL H HS ++
Sbjct: 103 GARSEEDARLAARKYAKIVRKLGYADVKLADFELHNLVASADVRFPIRLEALAHAHSNYA 162
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPELFPGL+YRM++PR+ LLIFV+G++VITGAKSR +L+EAF +YPVL F+K
Sbjct: 163 HYEPELFPGLVYRMLEPRLALLIFVSGKVVITGAKSRDDLNEAFQRLYPVLCQFRK 218
>gi|3599497|gb|AAC35362.1| TATA-binding protein [Lytechinus variegatus]
Length = 271
Score = 221 bits (564), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 99/172 (57%), Positives = 136/172 (79%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C L+L +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 98 QNIVSTVNLSCKLELKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 157
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LA+RK+A+++++LG K+ FKI N+V +CDV+FP++L+ L H QFSSYEP
Sbjct: 158 SEDDSRLAARKYARVVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 217
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E+++AF+NIYP+LKSFKK
Sbjct: 218 ELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFNNIYPILKSFKK 269
>gi|148676212|gb|EDL08159.1| TBP-related factor 3 [Mus musculus]
Length = 208
Score = 221 bits (563), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 96/174 (55%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T ++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 34 QLQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKVVCTG 93
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E + +LA+RK+A+++++LG P+++ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 94 AKSEEESRLAARKYARVVQKLGFPVRFFNFKIQNMVGSCDVKFPIRLEILALTHRQFSSY 153
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIY+MVKP+VVLLIF +G++V+TGAK RSE++EAF+N+YP+L+SFKK
Sbjct: 154 EPELFPGLIYKMVKPQVVLLIFASGKVVLTGAKERSEIYEAFENMYPILESFKK 207
>gi|194759081|ref|XP_001961778.1| GF14757 [Drosophila ananassae]
gi|190615475|gb|EDV30999.1| GF14757 [Drosophila ananassae]
Length = 224
Score = 221 bits (563), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 99/175 (56%), Positives = 136/175 (77%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V T SV C LDL INSR R SEY+P +F G+IM++ +PR T L F++GK++
Sbjct: 49 IRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKIICT 108
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GA++E D + SRKFA+IL++LG P+K+ +K+ NIV T D+RFP++L+ L+ VH QFSS
Sbjct: 109 GARNEIDADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNQVHGQFSS 168
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPE+FPGLIYRMVKPR+VLLIFVNG++V TGAKSR ++ + + I P+L SF+K
Sbjct: 169 YEPEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDIMDCLEAISPILLSFRK 223
>gi|320582327|gb|EFW96544.1| TATA-binding protein, general transcription factor [Ogataea
parapolymorpha DL-1]
Length = 246
Score = 221 bits (563), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C L+L I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 74 QNIVATVNLDCRLELKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 133
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLA+RK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 134 SEDDSKLAARKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYAHGTFSSYEP 193
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 194 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYKAFEAIYPVLSEFRK 245
>gi|338726931|ref|XP_001496050.2| PREDICTED: TATA box-binding protein-like protein 2-like [Equus
caballus]
Length = 555
Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats.
Identities = 99/172 (57%), Positives = 134/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T ++ C LDL +I + R +EYNP +F +IM+I PRTT L F SGK++ GA+
Sbjct: 383 QNVVSTANLACKLDLKKIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKIVCTGAR 442
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RKFA+++++LG P ++ FKI N+V +CDVRFP++L+ L H QF SYEP
Sbjct: 443 SEEQSRLAARKFARVIQKLGFPARFLDFKIQNLVGSCDVRFPIRLEGLVLTHQQFCSYEP 502
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMV PRVVLLIFV+G++V+TGAK RSE++EAF NIYP+LK+F+K
Sbjct: 503 ELFPGLIYRMVNPRVVLLIFVSGKVVLTGAKERSEIYEAFKNIYPILKNFEK 554
>gi|150247085|ref|NP_001092831.1| TATA box-binding protein-like protein 2 [Rattus norvegicus]
gi|166987367|sp|A6H909.1|TBPL2_RAT RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|148910847|tpg|DAA06034.1| TPA_inf: TATA box binding protein-like 2 [Rattus norvegicus]
Length = 344
Score = 221 bits (563), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 96/174 (55%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T ++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 170 QLQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKVVCTG 229
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E + +LA+RK+A+++++LG P+++ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 230 AKSEDESRLAARKYARVVQKLGFPVRFFNFKIQNMVASCDVKFPIRLEILALTHRQFSSY 289
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIY+MVKP+VVLLIF +G++V+TGAK RSE++EAF+N+YP+L+SFKK
Sbjct: 290 EPELFPGLIYKMVKPQVVLLIFASGKVVLTGAKERSEIYEAFENMYPILESFKK 343
>gi|385301759|gb|EIF45927.1| tata-box binding protein [Dekkera bruxellensis AWRI1499]
Length = 259
Score = 221 bits (563), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 97/173 (56%), Positives = 134/173 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C L+L I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 87 QNIVATVNLDCRLELKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 146
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLA+RK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 147 SEDDSKLAARKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYAHGTFSSYEP 206
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K+
Sbjct: 207 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYKAFEAIYPVLSEFRKK 259
>gi|296215093|ref|XP_002807283.1| PREDICTED: LOW QUALITY PROTEIN: TATA box-binding protein-like
protein 2 [Callithrix jacchus]
Length = 373
Score = 221 bits (563), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 98/174 (56%), Positives = 135/174 (77%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 199 QLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 258
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
A+ E +LA+RK+A+++++LG P ++ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 259 ARSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 318
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE+ EAF+NIYP+LK FKK
Sbjct: 319 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEICEAFENIYPILKGFKK 372
>gi|448513790|ref|XP_003867010.1| Tbp1 transcription initiation factor [Candida orthopsilosis Co
90-125]
gi|380351348|emb|CCG21572.1| Tbp1 transcription initiation factor [Candida orthopsilosis Co
90-125]
Length = 251
Score = 221 bits (563), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 99/172 (57%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 79 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 138
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 139 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 198
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E++ AF+ IYPVL F+K
Sbjct: 199 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEFRK 250
>gi|540193|gb|AAA79367.1| TATA binding protein [Pneumocystis carinii]
Length = 230
Score = 221 bits (563), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 133/173 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 57 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 116
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 117 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYSHGTFSSYEP 176
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 177 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEIYQAFEAIYPVLSEFRKS 229
>gi|344305038|gb|EGW35270.1| hypothetical protein SPAPADRAFT_58486 [Spathaspora passalidarum
NRRL Y-27907]
Length = 246
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 132/173 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 74 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 133
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 134 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 193
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E++ AF+ IYPVL F+K
Sbjct: 194 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEFRKS 246
>gi|354546879|emb|CCE43611.1| hypothetical protein CPAR2_212550 [Candida parapsilosis]
Length = 259
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 132/173 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 87 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 146
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 147 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 206
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E++ AF+ IYPVL F+K
Sbjct: 207 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEFRKS 259
>gi|344228428|gb|EGV60314.1| TBP-domain-containing protein [Candida tenuis ATCC 10573]
Length = 237
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 99/172 (57%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 65 QNIVATVNLDCKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 124
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E+D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 125 SENDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 184
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E++ AF+ IYPVL F+K
Sbjct: 185 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEFRK 236
>gi|349602909|gb|AEP98902.1| TATA-box-binding protein-like protein, partial [Equus caballus]
Length = 169
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 96/167 (57%), Positives = 132/167 (79%)
Query: 9 TISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 68
+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK E
Sbjct: 1 AVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQS 60
Query: 69 KLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPG 128
+LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYEPELFPG
Sbjct: 61 RLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPG 120
Query: 129 LIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
LIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 121 LIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 167
>gi|50308801|ref|XP_454405.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643540|emb|CAG99492.1| KLLA0E10099p [Kluyveromyces lactis]
Length = 233
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 61 QNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 120
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 121 SEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 180
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 181 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 232
>gi|540195|gb|AAA79368.1| TATA binding protein [Pneumocystis wakefieldiae]
Length = 229
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 134/173 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 56 QNIVATVNLDCRLDLKTIALQRRNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 115
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 116 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYSHGTFSSYEP 175
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 176 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEIYQAFEAIYPVLNEFRKS 228
>gi|19115478|ref|NP_594566.1| TATA-binding protein (TBP) [Schizosaccharomyces pombe 972h-]
gi|135639|sp|P17871.1|TBP_SCHPO RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|295936|emb|CAA37494.1| TFIID [Schizosaccharomyces pombe]
gi|1044934|emb|CAA91430.1| transcription initiation factor tfiid [Schizosaccharomyces pombe]
gi|6723895|emb|CAB66471.1| TATA-binding protein (TBP) [Schizosaccharomyces pombe]
gi|226987|prf||1612348A transcription factor IID
Length = 231
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 99/172 (57%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P++T L F SGK+++LG K
Sbjct: 59 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKSTALIFASGKMVVLGGK 118
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 119 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYSHGTFSSYEP 178
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP+VVLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 179 ELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYQAFEAIYPVLSEFRK 230
>gi|254566373|ref|XP_002490297.1| TATA-binding protein, general transcription factor [Komagataella
pastoris GS115]
gi|238030093|emb|CAY68016.1| TATA-binding protein, general transcription factor [Komagataella
pastoris GS115]
gi|328350692|emb|CCA37092.1| TATA-box-binding protein [Komagataella pastoris CBS 7435]
Length = 243
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 99/172 (57%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 71 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 130
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 131 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGHFSSYEP 190
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 191 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREEIYQAFEAIYPVLSEFRK 242
>gi|213401857|ref|XP_002171701.1| TATA-box-binding protein [Schizosaccharomyces japonicus yFS275]
gi|211999748|gb|EEB05408.1| TATA-box-binding protein [Schizosaccharomyces japonicus yFS275]
Length = 231
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 99/172 (57%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 59 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 118
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 119 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYSHGTFSSYEP 178
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 179 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEIYQAFEAIYPVLSEFRK 230
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S +S Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 149 QNIVGSCDVKFPIRLEGLAYSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGA 208
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L + P
Sbjct: 209 KVREEIYQAFEAIYPVLSEFRKP 231
>gi|448112531|ref|XP_004202120.1| Piso0_001599 [Millerozyma farinosa CBS 7064]
gi|448115084|ref|XP_004202744.1| Piso0_001599 [Millerozyma farinosa CBS 7064]
gi|359383612|emb|CCE79528.1| Piso0_001599 [Millerozyma farinosa CBS 7064]
gi|359465109|emb|CCE88814.1| Piso0_001599 [Millerozyma farinosa CBS 7064]
Length = 241
Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 99/172 (57%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 69 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 128
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 129 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 188
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E++ AF+ IYPVL F+K
Sbjct: 189 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEFRK 240
>gi|47551211|ref|NP_999786.1| TATA-box-binding protein [Strongylocentrotus purpuratus]
gi|3122940|sp|P91809.1|TBP_STRPU RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|1840134|gb|AAB47272.1| TATA binding protein [Strongylocentrotus purpuratus]
Length = 265
Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 99/172 (57%), Positives = 136/172 (79%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 92 QNIVSTVNLNCRLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 151
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E + +LA+RK+A+++++LG K+ FKI N+V +CDV+FP++L+ L H QFSSYEP
Sbjct: 152 REDNSRLAARKYARVVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 211
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E+++AF+NIYP+LKSFKK
Sbjct: 212 ELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFNNIYPILKSFKK 263
>gi|294659650|ref|XP_002770623.1| DEHA2G11836p [Debaryomyces hansenii CBS767]
gi|199434124|emb|CAR65957.1| DEHA2G11836p [Debaryomyces hansenii CBS767]
Length = 243
Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 99/172 (57%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 71 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 130
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 131 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 190
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E++ AF+ IYPVL F+K
Sbjct: 191 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEFRK 242
>gi|406607792|emb|CCH40897.1| TATA-box-binding protein [Wickerhamomyces ciferrii]
Length = 238
Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/172 (57%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 66 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 125
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 126 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGPFSSYEP 185
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 186 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLNEFRK 237
>gi|195472903|ref|XP_002088737.1| GE18732 [Drosophila yakuba]
gi|194174838|gb|EDW88449.1| GE18732 [Drosophila yakuba]
Length = 224
Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 98/175 (56%), Positives = 136/175 (77%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V T SV C LDL INSR R SEY+P +F G+IM++ +PR T L F++GK++
Sbjct: 49 IRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKIICT 108
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GA++E + + SRKFA+IL++LG P+K+ +K+ NIV T D+RFP++L+ L+ VH QFSS
Sbjct: 109 GARNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNQVHGQFSS 168
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPE+FPGLIYRMVKPR+VLLIFVNG++V TGAKSR ++ + + I P+L SF+K
Sbjct: 169 YEPEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDIMDCLEAISPILLSFRK 223
>gi|345803952|ref|XP_853710.2| PREDICTED: TATA box binding protein like 2 [Canis lupus familiaris]
Length = 431
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/174 (56%), Positives = 134/174 (77%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 257 QLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 316
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P ++ FKI N+V +CDVRF + L+ L H QFSSY
Sbjct: 317 AKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFAISLEGLVLTHQQFSSY 376
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK FKK
Sbjct: 377 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 430
>gi|255568956|ref|XP_002525448.1| TATA-box binding protein, putative [Ricinus communis]
gi|223535261|gb|EEF36938.1| TATA-box binding protein, putative [Ricinus communis]
Length = 201
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/172 (57%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL QI + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 QNIVSTVNLDCKLDLKQIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 86
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 87 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 146
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IVITGAK R E + AF+NIYPVL F+K
Sbjct: 147 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 198
>gi|195434401|ref|XP_002065191.1| GK15318 [Drosophila willistoni]
gi|194161276|gb|EDW76177.1| GK15318 [Drosophila willistoni]
Length = 226
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 135/172 (78%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T SV C LDL INSR R SEY+P +F G+IM++ +PR T L F++GK++ GA+
Sbjct: 54 QNIVATFSVACELDLKSINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKIICTGAR 113
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+E + + SRKFA+IL++LG P+K+ +K+ NIV T D+RFP++L+ L+ VH QFSSYEP
Sbjct: 114 NEIEADIGSRKFARILQKLGFPVKFTDYKLQNIVATVDLRFPIRLENLNQVHGQFSSYEP 173
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
E+FPGLIYRMVKPR+VLLIFVNG++V TGAKSR ++ + + I P+L SF+K
Sbjct: 174 EMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDIMDCLEAISPILLSFRK 225
>gi|195425556|ref|XP_002061064.1| GK10649 [Drosophila willistoni]
gi|194157149|gb|EDW72050.1| GK10649 [Drosophila willistoni]
Length = 351
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 135/173 (78%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 178 QNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 237
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSYEP
Sbjct: 238 SEDDSRLAARKYARIIQKLGFPAKFMDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEP 297
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMV+PR+VLLIFV+G++V+TGAK R E+++AFD I+P+LK FKKQ
Sbjct: 298 ELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKKQ 350
>gi|125807343|ref|XP_001360369.1| GA22088 [Drosophila pseudoobscura pseudoobscura]
gi|195149788|ref|XP_002015837.1| GL11271 [Drosophila persimilis]
gi|54635541|gb|EAL24944.1| GA22088 [Drosophila pseudoobscura pseudoobscura]
gi|194109684|gb|EDW31727.1| GL11271 [Drosophila persimilis]
Length = 345
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/175 (56%), Positives = 135/175 (77%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 170 QLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 229
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSY
Sbjct: 230 AKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSY 289
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMV+PR+VLLIFV+G++V+TGAK R E+++AFD I+P+LK FKKQ
Sbjct: 290 EPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKKQ 344
>gi|297746507|emb|CBI16563.3| unnamed protein product [Vitis vinifera]
Length = 238
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 134/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
EH KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEHQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 197
>gi|260941770|ref|XP_002615051.1| TATA-box binding protein [Clavispora lusitaniae ATCC 42720]
gi|238851474|gb|EEQ40938.1| TATA-box binding protein [Clavispora lusitaniae ATCC 42720]
Length = 237
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 131/173 (75%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 65 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 124
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 125 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 184
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E++ AF+ IYPVL F+K
Sbjct: 185 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEFRKS 237
>gi|45201230|ref|NP_986800.1| AGR134Wp [Ashbya gossypii ATCC 10895]
gi|44986084|gb|AAS54624.1| AGR134Wp [Ashbya gossypii ATCC 10895]
gi|374110049|gb|AEY98954.1| FAGR134Wp [Ashbya gossypii FDAG1]
Length = 239
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 67 QNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 126
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 127 SEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 186
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 187 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 238
>gi|15222732|ref|NP_175948.1| TATA-box-binding protein 2 [Arabidopsis thaliana]
gi|30695955|ref|NP_849812.1| TATA-box-binding protein 2 [Arabidopsis thaliana]
gi|135627|sp|P28148.1|TBP2_ARATH RecName: Full=TATA-box-binding protein 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP-2; AltName:
Full=TATA-binding factor 2; AltName: Full=TATA-box
factor 2; AltName: Full=Transcription initiation factor
TFIID TBP-2 subunit
gi|16546|emb|CAA38742.1| transcription initiation factor II [Arabidopsis thaliana]
gi|4204264|gb|AAD10645.1| transcription initiation factor II [Arabidopsis thaliana]
gi|30102756|gb|AAP21296.1| At1g55520 [Arabidopsis thaliana]
gi|39545930|gb|AAR28028.1| TBP2 [Arabidopsis thaliana]
gi|110743161|dbj|BAE99472.1| transcription initiation factor TFIID-2 [Arabidopsis thaliana]
gi|225898024|dbj|BAH30344.1| hypothetical protein [Arabidopsis thaliana]
gi|332195136|gb|AEE33257.1| TATA-box-binding protein 2 [Arabidopsis thaliana]
gi|332195137|gb|AEE33258.1| TATA-box-binding protein 2 [Arabidopsis thaliana]
gi|227073|prf||1613452A transcription initiation factor TFIID-1
Length = 200
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/172 (58%), Positives = 134/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
EH KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + HS FSSYEP
Sbjct: 86 SEHLSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHSAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM P++VLLIFV+G+IVITGAK R E + AF+NIYPVL+ F+K
Sbjct: 146 ELFPGLIYRMKLPKIVLLIFVSGKIVITGAKMREETYTAFENIYPVLREFRK 197
>gi|363753780|ref|XP_003647106.1| hypothetical protein Ecym_5549 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890742|gb|AET40289.1| hypothetical protein Ecym_5549 [Eremothecium cymbalariae
DBVPG#7215]
Length = 239
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 67 QNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 126
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 127 SEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 186
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 187 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 238
>gi|195339082|ref|XP_002036150.1| GM16720 [Drosophila sechellia]
gi|194130030|gb|EDW52073.1| GM16720 [Drosophila sechellia]
Length = 224
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 98/175 (56%), Positives = 136/175 (77%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V T SV C LDL INSR R SEY+P +F G+IM++ +PR T L F++GK++
Sbjct: 49 IRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKVICT 108
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GA++E + + SRKFA+IL++LG P+K+ +K+ NIV T D+RFP++L+ L+ VH QFSS
Sbjct: 109 GARNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNQVHGQFSS 168
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPE+FPGLIYRMVKPR+VLLIFVNG++V TGAKSR ++ + + I P+L SF+K
Sbjct: 169 YEPEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDIMDCLEAISPILLSFRK 223
>gi|194881988|ref|XP_001975095.1| GG20753 [Drosophila erecta]
gi|190658282|gb|EDV55495.1| GG20753 [Drosophila erecta]
Length = 349
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 135/173 (78%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 176 QNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 235
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSYEP
Sbjct: 236 SEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEP 295
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMV+PR+VLLIFV+G++V+TGAK R E+++AFD I+P+LK FKKQ
Sbjct: 296 ELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKKQ 348
>gi|195585514|ref|XP_002082526.1| GD25175 [Drosophila simulans]
gi|194194535|gb|EDX08111.1| GD25175 [Drosophila simulans]
Length = 352
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/175 (56%), Positives = 135/175 (77%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 177 QLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 236
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSY
Sbjct: 237 AKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSY 296
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMV+PR+VLLIFV+G++V+TGAK R E+++AFD I+P+LK FKKQ
Sbjct: 297 EPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKKQ 351
>gi|195577454|ref|XP_002078585.1| GD23502 [Drosophila simulans]
gi|194190594|gb|EDX04170.1| GD23502 [Drosophila simulans]
Length = 224
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 98/175 (56%), Positives = 136/175 (77%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V T SV C LDL INSR R SEY+P +F G+IM++ +PR T L F++GK++
Sbjct: 49 IRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKVICT 108
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GA++E + + SRKFA+IL++LG P+K+ +K+ NIV T D+RFP++L+ L+ VH QFSS
Sbjct: 109 GARNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNQVHGQFSS 168
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPE+FPGLIYRMVKPR+VLLIFVNG++V TGAKSR ++ + + I P+L SF+K
Sbjct: 169 YEPEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDIMDCLEAISPILLSFRK 223
>gi|194755930|ref|XP_001960232.1| GF11627 [Drosophila ananassae]
gi|190621530|gb|EDV37054.1| GF11627 [Drosophila ananassae]
Length = 348
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/175 (56%), Positives = 135/175 (77%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 173 QLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 232
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSY
Sbjct: 233 AKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSY 292
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPELFPGLIYRMV+PR+VLLIFV+G++V+TGAK R E+++AFD I+P+LK FKKQ
Sbjct: 293 EPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKKQ 347
>gi|126274078|ref|XP_001387406.1| TATA-binding protein [Scheffersomyces stipitis CBS 6054]
gi|126213276|gb|EAZ63383.1| TATA-binding protein [Scheffersomyces stipitis CBS 6054]
Length = 247
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/172 (57%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 75 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 134
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 135 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 194
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E++ AF++IYPVL F+K
Sbjct: 195 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFESIYPVLSEFRK 246
>gi|1016266|gb|AAA79092.1| TATA-box binding protein [Drosophila melanogaster]
Length = 354
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 135/173 (78%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 181 QNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 240
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSYEP
Sbjct: 241 SEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEP 300
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMV+PR+VLLIFV+G++V+TGAK R E+++AFD I+P+LK FKKQ
Sbjct: 301 ELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKKQ 353
>gi|17647997|ref|NP_523805.1| TATA binding protein [Drosophila melanogaster]
gi|135636|sp|P20227.1|TBP_DROME RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|158532|gb|AAA28926.1| TATA-consensus-binding transcription factor TFII [Drosophila
melanogaster]
gi|158542|gb|AAA28931.1| TATA-box binding protein [Drosophila melanogaster]
gi|515665|gb|AAA68629.1| TATA-box binding protein [Drosophila melanogaster]
gi|7291324|gb|AAF46754.1| TATA binding protein [Drosophila melanogaster]
gi|17862662|gb|AAL39808.1| LD44083p [Drosophila melanogaster]
gi|220942262|gb|ACL83674.1| Tbp-PA [synthetic construct]
gi|220952470|gb|ACL88778.1| Tbp-PA [synthetic construct]
Length = 353
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 135/173 (78%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 180 QNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 239
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSYEP
Sbjct: 240 SEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEP 299
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMV+PR+VLLIFV+G++V+TGAK R E+++AFD I+P+LK FKKQ
Sbjct: 300 ELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKKQ 352
>gi|195117828|ref|XP_002003449.1| GI17918 [Drosophila mojavensis]
gi|193914024|gb|EDW12891.1| GI17918 [Drosophila mojavensis]
Length = 220
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/172 (57%), Positives = 134/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T SV C LDL INSR R SEY P +F G+IM++ +PR T L F++GK++ GA+
Sbjct: 48 QNIVATFSVDCELDLKTINSRTRNSEYTPKRFRGVIMRMHSPRCTALIFRTGKVICTGAR 107
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+E + + SRKFA+IL++LG P+K+ +K+ NIV T D+RFP++L+ L+ VH QFSSYEP
Sbjct: 108 NETEANIGSRKFARILQKLGFPVKFVDYKLQNIVATVDLRFPIRLENLNQVHGQFSSYEP 167
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
E+FPGLIYRMVKPR+VLLIFVNG+IV TGAKSR ++ + + I P+L SF+K
Sbjct: 168 EMFPGLIYRMVKPRIVLLIFVNGKIVFTGAKSRKDIMDCLEAISPILLSFRK 219
>gi|195388008|ref|XP_002052684.1| GJ17690 [Drosophila virilis]
gi|194149141|gb|EDW64839.1| GJ17690 [Drosophila virilis]
Length = 220
Score = 219 bits (559), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 99/172 (57%), Positives = 134/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T SV C LDL INSR R SEY P +F G+IM++ +PR T L F++GK++ GA+
Sbjct: 48 QNIVATFSVDCELDLKTINSRTRNSEYTPKRFRGVIMRMHSPRCTALIFRTGKVICTGAR 107
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+E + + SRKFA+IL++LG P+K+ +K+ NIV T D+RFP++L+ L+ VH QFSSYEP
Sbjct: 108 NEMEANIGSRKFARILQKLGFPVKFVDYKLQNIVATVDLRFPIRLENLNQVHGQFSSYEP 167
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
E+FPGLIYRMVKPR+VLLIFVNG+IV TGAKSR ++ + + I P+L SF+K
Sbjct: 168 EMFPGLIYRMVKPRIVLLIFVNGKIVFTGAKSRKDIMDCLEAISPILLSFRK 219
>gi|225435804|ref|XP_002285755.1| PREDICTED: TATA-box-binding protein-like [Vitis vinifera]
Length = 200
Score = 219 bits (559), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 134/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
EH KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEHQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 197
>gi|195486396|ref|XP_002091492.1| GE13685 [Drosophila yakuba]
gi|194177593|gb|EDW91204.1| GE13685 [Drosophila yakuba]
Length = 349
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 135/173 (78%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 176 QNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 235
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSYEP
Sbjct: 236 SEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEP 295
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMV+PR+VLLIFV+G++V+TGAK R E+++AFD I+P+LK FKKQ
Sbjct: 296 ELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKKQ 348
>gi|195403015|ref|XP_002060091.1| GJ14917 [Drosophila virilis]
gi|194149413|gb|EDW65108.1| GJ14917 [Drosophila virilis]
Length = 352
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 135/173 (78%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 179 QNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 238
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSYEP
Sbjct: 239 SEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEP 298
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMV+PR+VLLIFV+G++V+TGAK R E+++AFD I+P+LK FKKQ
Sbjct: 299 ELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKKQ 351
>gi|195057981|ref|XP_001995362.1| GH23121 [Drosophila grimshawi]
gi|193899568|gb|EDV98434.1| GH23121 [Drosophila grimshawi]
Length = 348
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 135/173 (78%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 175 QNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 234
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSYEP
Sbjct: 235 SEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEP 294
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMV+PR+VLLIFV+G++V+TGAK R E+++AFD I+P+LK FKKQ
Sbjct: 295 ELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKKQ 347
>gi|320588959|gb|EFX01427.1| RNA polymerase 1 and 3 transcription factor complex component
[Grosmannia clavigera kw1407]
Length = 268
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 96/174 (55%), Positives = 134/174 (77%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
++N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ G
Sbjct: 94 RWENIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTG 153
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSY
Sbjct: 154 AKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSY 213
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E++ AF+ IYPVL+ F+K
Sbjct: 214 EPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYTAFEMIYPVLQDFRK 267
>gi|72679753|gb|AAI00306.1| TATA box binding protein like 2 [Mus musculus]
gi|148910845|tpg|DAA06033.1| TPA_inf: TATA box binding protein-like 2 [Mus musculus]
gi|219520477|gb|AAI44905.1| Tbpl2 protein [Mus musculus]
Length = 349
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 96/174 (55%), Positives = 137/174 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T ++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 175 QLQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKVVCTG 234
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E + +LA+RK+A+++++LG P+++ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 235 AKSEEESRLAARKYARVVQKLGFPVRFFNFKIQNMVGSCDVKFPIRLEILALTHRQFSSY 294
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIY+MVKP+VVLLIF +G++V+TGAK RSE++EAF+N+YP+L+SFKK
Sbjct: 295 EPELFPGLIYKMVKPQVVLLIFASGKVVLTGAKERSEIYEAFENMYPILESFKK 348
>gi|417882|sp|Q02879.1|TBP2_WHEAT RecName: Full=TATA-box-binding protein 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP-2; AltName:
Full=TATA-binding factor 2; AltName: Full=TATA-box
factor 2; AltName: Full=Transcription initiation factor
TFIID TBP-2 subunit
gi|21877|emb|CAA79268.1| DNA binding protein [Triticum aestivum]
gi|170778|gb|AAA34307.1| DNA-binding protein [Triticum aestivum]
Length = 201
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 86
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 87 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVASCDVKFPIRLEGLAYSHGAFSSYEP 146
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 147 ELFPGLIYRMRQPKIVLLIFVSGKIVLTGAKVREETYSAFENIYPVLTEFRK 198
>gi|326490497|dbj|BAJ84912.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 200
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVASCDVKFPIRLEGLAYSHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMRQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRK 197
>gi|297853252|ref|XP_002894507.1| hypothetical protein ARALYDRAFT_474610 [Arabidopsis lyrata subsp.
lyrata]
gi|297340349|gb|EFH70766.1| hypothetical protein ARALYDRAFT_474610 [Arabidopsis lyrata subsp.
lyrata]
Length = 200
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 100/172 (58%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
EH KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + HS FSSYEP
Sbjct: 86 SEHLSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHSAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM P++VLLIFV+G+IVITGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKLPKIVLLIFVSGKIVITGAKMREETYTAFENIYPVLTEFRK 197
>gi|156053057|ref|XP_001592455.1| TATA-box binding protein [Sclerotinia sclerotiorum 1980]
gi|154704474|gb|EDO04213.1| TATA-box binding protein [Sclerotinia sclerotiorum 1980 UF-70]
Length = 251
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 134/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 79 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 138
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 139 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHMNFSSYEP 198
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ FKK
Sbjct: 199 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFKK 250
>gi|195380351|ref|XP_002048934.1| Tbp [Drosophila virilis]
gi|194143731|gb|EDW60127.1| Tbp [Drosophila virilis]
Length = 351
Score = 219 bits (558), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 135/173 (78%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 178 QNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 237
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSYEP
Sbjct: 238 SEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEP 297
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMV+PR+VLLIFV+G++V+TGAK R E+++AFD I+P+LK FKKQ
Sbjct: 298 ELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKKQ 350
>gi|135640|sp|P26357.1|TBP_SOLTU RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|21581|emb|CAA44360.1| TATA-binding protein [Solanum tuberosum]
Length = 200
Score = 219 bits (558), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYAHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IVITGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 197
>gi|242084298|ref|XP_002442574.1| hypothetical protein SORBIDRAFT_08g022273 [Sorghum bicolor]
gi|241943267|gb|EES16412.1| hypothetical protein SORBIDRAFT_08g022273 [Sorghum bicolor]
Length = 200
Score = 219 bits (558), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
EH KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEHQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 197
>gi|328768487|gb|EGF78533.1| Tata-Box binding protein ytbp [Batrachochytrium dendrobatidis
JAM81]
Length = 218
Score = 219 bits (557), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 134/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 46 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 105
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E + KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 106 SEDNSKLASRKYARIIQKLGFQAKFTDFKIQNIVGSCDVKFPIRLEGLAYAHGHFSSYEP 165
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF++IYPVL F+K
Sbjct: 166 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEIYQAFESIYPVLTEFRK 217
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + + +S Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 136 QNIVGSCDVKFPIRLEGLAYAHGHFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGA 195
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L + P
Sbjct: 196 KVREEIYQAFESIYPVLTEFRKP 218
>gi|50547559|ref|XP_501249.1| YALI0B23056p [Yarrowia lipolytica]
gi|49647115|emb|CAG83502.1| YALI0B23056p [Yarrowia lipolytica CLIB122]
Length = 227
Score = 219 bits (557), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA+
Sbjct: 55 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAR 114
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 115 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 174
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E++ AF+ IYPVL F+K
Sbjct: 175 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLNEFRK 226
>gi|154318373|ref|XP_001558505.1| transcription initiation factor TFIID, TATA binding protein
[Botryotinia fuckeliana B05.10]
gi|347837614|emb|CCD52186.1| similar to transcription initiation factor TFIID [Botryotinia
fuckeliana]
Length = 251
Score = 219 bits (557), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 134/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 79 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 138
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 139 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHMNFSSYEP 198
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ FKK
Sbjct: 199 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFKK 250
>gi|1174643|sp|P46272.1|TBP_ACECL RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|2654376|emb|CAA82267.1| TATA box binding protein [Acetabularia peniculus]
Length = 191
Score = 219 bits (557), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 94/173 (54%), Positives = 137/173 (79%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC L+L +I + R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 19 QNVVSTVNLGCTLELKEIAMQARNAEYNPKRFAAVIMRIRDPKTTALIFGSGKMVCTGAK 78
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D + A+RK+AKI+++LG P K+ FKI NIV +CDV+FP++++ L + H QF SYEP
Sbjct: 79 SEQDSRTAARKYAKIVQKLGFPAKFTEFKIQNIVGSCDVKFPIRMEPLAYQHQQFCSYEP 138
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRM++P++VLLIFV+G++V+TGAK R+E++ AF+ IYPVL F+K+
Sbjct: 139 ELFPGLIYRMLQPKIVLLIFVSGKVVLTGAKERTEIYRAFEQIYPVLTQFRKR 191
>gi|302693080|ref|XP_003036219.1| hypothetical protein SCHCODRAFT_81516 [Schizophyllum commune H4-8]
gi|300109915|gb|EFJ01317.1| hypothetical protein SCHCODRAFT_81516 [Schizophyllum commune H4-8]
Length = 286
Score = 218 bits (556), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 99/172 (57%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 114 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 173
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI NIV +CDVRFP++L+ L + H QFSSYEP
Sbjct: 174 SEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGQFSSYEP 233
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP+VVLLIFV+G+IV+TGAK R E++ AF+ IY VL F+K
Sbjct: 234 ELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRK 285
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S ++S Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 204 QNIVGSCDVRFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGA 263
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L + P
Sbjct: 264 KVREEIYTAFNTIYTVLCEFRKP 286
>gi|395843435|ref|XP_003794490.1| PREDICTED: TATA box-binding protein-like protein 2 [Otolemur
garnettii]
Length = 364
Score = 218 bits (556), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 100/172 (58%), Positives = 134/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V TI++ C LDL +I R + +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 192 QNIVCTINLACKLDLREIALRAKNTEYNPQRFSAVIMRIREPRTTALIFSSGKIVCTGAK 251
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RKFA+++++LG P ++ FKIHN+V +CDV FP++L+ L H QF SYEP
Sbjct: 252 SEEQSRLAARKFARVVQKLGFPARFLDFKIHNMVGSCDVGFPIRLEGLVLAHQQFCSYEP 311
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKPRVV+LIFV+G++V+ GAK RSE++EAF+NIY +LK FKK
Sbjct: 312 ELFPGLIYRMVKPRVVVLIFVSGKVVLAGAKKRSEIYEAFENIYSILKVFKK 363
>gi|328856236|gb|EGG05358.1| hypothetical protein MELLADRAFT_75016 [Melampsora larici-populina
98AG31]
Length = 233
Score = 218 bits (556), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 99/172 (57%), Positives = 134/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 61 QNIVATVNLECRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 120
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LA+RK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 121 SEDDSRLAARKYARIVQKLGFEAKFTEFKIQNIVGSCDVKFPIRLEGLAYNHGHFSSYEP 180
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP+VVLLIFV+G+IV+TGAK R E+++AF+NIYPVL F+K
Sbjct: 181 ELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYQAFNNIYPVLSEFRK 232
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + + +S Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 151 QNIVGSCDVKFPIRLEGLAYNHGHFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGA 210
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L + P
Sbjct: 211 KVREEIYQAFNNIYPVLSEFRKP 233
>gi|357155673|ref|XP_003577198.1| PREDICTED: TATA-box-binding protein 2-like [Brachypodium
distachyon]
Length = 202
Score = 218 bits (555), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 28 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 87
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 88 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 147
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 148 ELFPGLIYRMRQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRK 199
>gi|195122370|ref|XP_002005684.1| GI18943 [Drosophila mojavensis]
gi|193910752|gb|EDW09619.1| GI18943 [Drosophila mojavensis]
Length = 348
Score = 218 bits (555), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 135/173 (78%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 175 QNIVSTVNLCCKLDLKRIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 234
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSYEP
Sbjct: 235 SEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEP 294
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMV+PR+VLLIFV+G++V+TGAK R E+++AFD I+P+LK FKKQ
Sbjct: 295 ELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKKQ 347
>gi|356571702|ref|XP_003554013.1| PREDICTED: TATA-box-binding protein-like [Glycine max]
Length = 200
Score = 218 bits (555), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C L+L I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + HS FSSYEP
Sbjct: 86 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHSAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 197
>gi|302758308|ref|XP_002962577.1| hypothetical protein SELMODRAFT_270329 [Selaginella moellendorffii]
gi|302824582|ref|XP_002993933.1| hypothetical protein SELMODRAFT_163230 [Selaginella moellendorffii]
gi|300138205|gb|EFJ04980.1| hypothetical protein SELMODRAFT_163230 [Selaginella moellendorffii]
gi|300169438|gb|EFJ36040.1| hypothetical protein SELMODRAFT_270329 [Selaginella moellendorffii]
Length = 199
Score = 218 bits (555), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 25 QNIVSTVNMDCKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 84
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P +++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 85 SEQQSKLAARKYARIIQKLGFPAQFKDFKIQNIVGSCDVKFPIRLEGLAYAHGHFSSYEP 144
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E++EAF+NIYPVL F+K
Sbjct: 145 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDEIYEAFENIYPVLTEFRK 196
>gi|351727953|ref|NP_001238202.1| TATA-box-binding protein [Glycine max]
gi|3122946|sp|Q42808.1|TBP_SOYBN RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|1220522|gb|AAA91948.1| TATA-box binding protein [Glycine max]
Length = 200
Score = 218 bits (554), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 197
>gi|440638539|gb|ELR08458.1| TATA-box-binding protein [Geomyces destructans 20631-21]
Length = 262
Score = 218 bits (554), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 90 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 149
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 150 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYEP 209
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ FKK
Sbjct: 210 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFKK 261
>gi|357119735|ref|XP_003561589.1| PREDICTED: TATA-box-binding protein 2-like [Brachypodium
distachyon]
Length = 200
Score = 218 bits (554), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRK 197
>gi|356568214|ref|XP_003552308.1| PREDICTED: TATA-box-binding protein-like [Glycine max]
Length = 200
Score = 218 bits (554), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+S+ C L+L I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVSLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 197
>gi|195035545|ref|XP_001989238.1| GH11614 [Drosophila grimshawi]
gi|193905238|gb|EDW04105.1| GH11614 [Drosophila grimshawi]
Length = 220
Score = 218 bits (554), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 134/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T SV C LDL INSR R SEY P +F G+IM++ +PR T L F++GK++ GA+
Sbjct: 48 QNIVATFSVDCELDLKTINSRTRNSEYTPKRFRGVIMRMHSPRCTALIFRTGKVICTGAR 107
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+E + + SRKFA+IL++LG P+K+ +K+ NIV T D+RFP++L+ L+ VH QFSSYEP
Sbjct: 108 NEIEANMGSRKFARILQKLGFPVKFVDYKLQNIVATVDLRFPIRLENLNQVHGQFSSYEP 167
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
E+FPGLIYRMVKPR+VLLIFVNG++V TGAKSR ++ + + I P+L SF+K
Sbjct: 168 EMFPGLIYRMVKPRLVLLIFVNGKVVFTGAKSRKDIMDCLEAISPILLSFRK 219
>gi|336465922|gb|EGO54087.1| hypothetical protein NEUTE1DRAFT_118055 [Neurospora tetrasperma
FGSC 2508]
gi|350287243|gb|EGZ68490.1| putative transcription initiation factor [Neurospora tetrasperma
FGSC 2509]
Length = 257
Score = 218 bits (554), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 85 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 144
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 145 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYEP 204
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ F+K
Sbjct: 205 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRK 256
>gi|6063008|gb|AAF03091.1|AF144035_1 transcription initiation factor TFIID [Antonospora locustae]
Length = 259
Score = 218 bits (554), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 87 QNVVATVNLNCKLDLKAIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 146
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA++KF++I+ +LG K+ FKI NIV +CD +F ++L+ L HS F SYEP
Sbjct: 147 SEQTSKLAAQKFSRIIHKLGFNTKFADFKIQNIVSSCDTQFSIRLEGLAFAHSNFCSYEP 206
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E++EAFDNIYPVL +KK
Sbjct: 207 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKMRDEIYEAFDNIYPVLTQYKK 258
>gi|294034|gb|AAA16924.1| TATA box-binding protein, partial [Onchocerca volvulus]
Length = 179
Score = 218 bits (554), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 134/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++G PLDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 8 QNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 67
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RK+A+I+++LG K+ FK+ N+V +CDVRFP++L+ L H+QFS+YEP
Sbjct: 68 SEESSRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRFPIQLEGLCLTHTQFSTYEP 127
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKPRVVLLIFV+G++VITGAK + ++ +AF+ IYP+LK FKK
Sbjct: 128 ELFPGLIYRMVKPRVVLLIFVSGKVVITGAKYKKDIDDAFNQIYPILKGFKK 179
>gi|85096222|ref|XP_960219.1| TATA-box binding protein [Neurospora crassa OR74A]
gi|28921702|gb|EAA30983.1| TATA-box binding protein [Neurospora crassa OR74A]
gi|39979211|emb|CAE85582.1| probable TRANSCRIPTION INITIATION FACTOR TFIID [Neurospora crassa]
Length = 257
Score = 218 bits (554), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 85 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 144
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 145 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYEP 204
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ F+K
Sbjct: 205 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRK 256
>gi|171681966|ref|XP_001905926.1| hypothetical protein [Podospora anserina S mat+]
gi|170940942|emb|CAP66592.1| unnamed protein product [Podospora anserina S mat+]
Length = 255
Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 83 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 142
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 143 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYEP 202
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ F+K
Sbjct: 203 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRK 254
>gi|361131465|gb|EHL03148.1| putative TATA-box-binding protein [Glarea lozoyensis 74030]
Length = 255
Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 83 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 142
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 143 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 202
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ FKK
Sbjct: 203 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFKK 254
>gi|384500347|gb|EIE90838.1| TATA-box-binding protein [Rhizopus delemar RA 99-880]
Length = 248
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 97/173 (56%), Positives = 133/173 (76%)
Query: 3 YQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
++N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GA
Sbjct: 75 FRNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 134
Query: 63 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
K E D KLA+RK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H FSSYE
Sbjct: 135 KSEDDSKLAARKYARIIQKLGFQAKFTDFKIQNIVGSCDVKFPIRLEGLAYSHGHFSSYE 194
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
PELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF IYPVL F+K
Sbjct: 195 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEIYQAFQAIYPVLTEFRK 247
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S +S Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 166 QNIVGSCDVKFPIRLEGLAYSHGHFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGA 225
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A + +L + P
Sbjct: 226 KVREEIYQAFQAIYPVLTEFRKP 248
>gi|326522452|dbj|BAK07688.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 233
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 134/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL QI + R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 59 QNIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAK 118
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P ++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 119 SEEHSKLAARKYARIVQKLGFPATFKDFKIQNIVASCDVKFPIRLEGLAYSHGAFSSYEP 178
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLL+FV+G+IV+TGAK R E++ AF+NIYPVL ++K
Sbjct: 179 ELFPGLIYRMKQPKIVLLVFVSGKIVLTGAKVRDEIYAAFENIYPVLTEYRK 230
>gi|340939166|gb|EGS19788.1| putative tata-box binding protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 255
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 83 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 142
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 143 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYEP 202
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ F+K
Sbjct: 203 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRK 254
>gi|170591981|ref|XP_001900748.1| TATA-box binding protein [Brugia malayi]
gi|158591900|gb|EDP30503.1| TATA-box binding protein, putative [Brugia malayi]
Length = 347
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 134/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++G PLDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 176 QNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 235
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RK+A+I+++LG K+ FK+ N+V +CDVRFP++L+ L H+QFS+YEP
Sbjct: 236 SEESSRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRFPIQLEGLCLTHTQFSTYEP 295
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKPRVVLLIFV+G++VITGAK + ++ +AF+ IYP+LK FKK
Sbjct: 296 ELFPGLIYRMVKPRVVLLIFVSGKVVITGAKYKKDIDDAFNQIYPILKGFKK 347
>gi|162459891|ref|NP_001105318.1| TATA-box-binding protein 1 [Zea mays]
gi|1729907|sp|P50158.1|TBP1_MAIZE RecName: Full=TATA-box-binding protein 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP-1; AltName:
Full=TATA-binding factor 1; AltName: Full=TATA-box
factor 1; AltName: Full=Transcription initiation factor
TFIID TBP-1 subunit
gi|293904|gb|AAA65941.1| TATA-binding protein [Zea mays]
gi|414872053|tpg|DAA50610.1| TPA: TATA-box-binding protein 1(TATA-binding factor 1)(TATA
sequence-binding protein 1) [Zea mays]
Length = 200
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLAEFRK 197
>gi|384501418|gb|EIE91909.1| TATA-box-binding protein [Rhizopus delemar RA 99-880]
Length = 239
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 67 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 126
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLA+RK+A+I+++LG K+ FKI NIV +CD++FP++L+ L + H FSSYEP
Sbjct: 127 SEDDSKLAARKYARIIQKLGFQAKFTDFKIQNIVGSCDIKFPIRLEGLAYSHGHFSSYEP 186
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF IYPVL F+K
Sbjct: 187 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEIYQAFQAIYPVLTEFRK 238
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ + P+ L + S +S Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 157 QNIVGSCDIKFPIRLEGLAYSHGHFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGA 216
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A + +L + P
Sbjct: 217 KVREEIYQAFQAIYPVLTEFRKP 239
>gi|312069027|ref|XP_003137490.1| TATA-box binding protein [Loa loa]
gi|307767348|gb|EFO26582.1| TATA-box binding protein [Loa loa]
Length = 369
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 134/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++G PLDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 198 QNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 257
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RK+A+I+++LG K+ FK+ N+V +CDVRFP++L+ L H+QFS+YEP
Sbjct: 258 SEESSRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRFPIQLEGLCLTHTQFSTYEP 317
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKPRVVLLIFV+G++VITGAK + ++ +AF+ IYP+LK FKK
Sbjct: 318 ELFPGLIYRMVKPRVVLLIFVSGKVVITGAKYKKDIDDAFNQIYPILKGFKK 369
>gi|162459971|ref|NP_001105319.1| TATA-box-binding protein 2 [Zea mays]
gi|1729908|sp|P50159.1|TBP2_MAIZE RecName: Full=TATA-box-binding protein 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP-2; AltName:
Full=TATA-binding factor 2; AltName: Full=TATA-box
factor 2; AltName: Full=Transcription initiation factor
TFIID TBP-2 subunit
gi|293906|gb|AAA65942.1| TATA-binding protein [Zea mays]
gi|195604414|gb|ACG24037.1| TATA-binding protein 2 [Zea mays]
gi|238014342|gb|ACR38206.1| unknown [Zea mays]
gi|413933540|gb|AFW68091.1| TATA-binding protein2 [Zea mays]
Length = 200
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLSEFRK 197
>gi|388580273|gb|EIM20589.1| TBP-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 238
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 133/173 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 66 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 125
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 126 SEDDSKLASRKYARIIQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYTHGHFSSYEP 185
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMVKP+VVLLIFV+G+IV+TGAK R E++ AF+NIY L ++KQ
Sbjct: 186 ELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYTAFNNIYATLLDYRKQ 238
>gi|322711070|gb|EFZ02644.1| TATA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 253
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 81 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 140
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 141 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 200
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ F+K
Sbjct: 201 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRK 252
>gi|449452638|ref|XP_004144066.1| PREDICTED: TATA-box-binding protein-like [Cucumis sativus]
gi|449493574|ref|XP_004159356.1| PREDICTED: TATA-box-binding protein-like [Cucumis sativus]
Length = 200
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRK 197
>gi|242038657|ref|XP_002466723.1| hypothetical protein SORBIDRAFT_01g012880 [Sorghum bicolor]
gi|241920577|gb|EER93721.1| hypothetical protein SORBIDRAFT_01g012880 [Sorghum bicolor]
Length = 200
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRK 197
>gi|195346517|ref|XP_002039804.1| GM15696 [Drosophila sechellia]
gi|194135153|gb|EDW56669.1| GM15696 [Drosophila sechellia]
Length = 352
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 98/173 (56%), Positives = 134/173 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 179 QNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 238
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H FSSYEP
Sbjct: 239 SEDSSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEP 298
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMV+PR+VLLIFV+G++V+TGAK R E+++AFD I+P+LK FKKQ
Sbjct: 299 ELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFKKQ 351
>gi|357146320|ref|XP_003573949.1| PREDICTED: TATA-box-binding protein 1-like [Brachypodium
distachyon]
Length = 235
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 134/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL QI + R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 61 QNIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAK 120
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P ++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 121 SEEHSKLAARKYARIVQKLGFPATFKDFKIQNIVASCDVKFPIRLEGLAYSHGAFSSYEP 180
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLL+FV+G+IV+TGAK R E++ AF+NIYPVL ++K
Sbjct: 181 ELFPGLIYRMKQPKIVLLVFVSGKIVLTGAKVRDEIYAAFENIYPVLTEYRK 232
>gi|169854094|ref|XP_001833724.1| transcription initiation factor TFIID-1 [Coprinopsis cinerea
okayama7#130]
gi|116505191|gb|EAU88086.1| transcription initiation factor TFIID-1 [Coprinopsis cinerea
okayama7#130]
Length = 308
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 136 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 195
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H QFSSYEP
Sbjct: 196 SEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEP 255
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP+VVLLIFV+G+IV+TGAK R E++ AF+ IY VL F+K
Sbjct: 256 ELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRK 307
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S ++S Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 226 QNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGA 285
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L + P
Sbjct: 286 KVREEIYTAFNTIYTVLCEFRKP 308
>gi|135641|sp|P26356.1|TBP1_WHEAT RecName: Full=TATA-box-binding protein 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP-1; AltName:
Full=TATA-binding factor 1; AltName: Full=TATA-box
factor 1; AltName: Full=Transcription initiation factor
TFIID TBP-1 subunit
gi|21875|emb|CAA42531.1| TATA binding protein (TFIID) [Triticum aestivum]
Length = 233
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 134/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL QI + R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 59 QNIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAK 118
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P ++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 119 SEEHSKLAARKYARIVQKLGFPATFKDFKIQNIVASCDVKFPIRLEGLAYSHGAFSSYEP 178
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLL+FV+G+IV+TGAK R E++ AF+NIYPVL ++K
Sbjct: 179 ELFPGLIYRMKQPKIVLLVFVSGKIVLTGAKVRDEIYAAFENIYPVLTEYRK 230
>gi|4102725|gb|AAD10238.1| TATA-box binding protein [Phaseolus vulgaris]
Length = 200
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 197
>gi|336276668|ref|XP_003353087.1| hypothetical protein SMAC_03405 [Sordaria macrospora k-hell]
gi|380092572|emb|CCC09849.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 257
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 85 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 144
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 145 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYEP 204
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ F+K
Sbjct: 205 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRK 256
>gi|222625492|gb|EEE59624.1| hypothetical protein OsJ_11965 [Oryza sativa Japonica Group]
Length = 207
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 29 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 88
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 89 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 148
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 149 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 200
>gi|4102723|gb|AAD10237.1| TATA-box binding protein [Phaseolus vulgaris]
Length = 200
Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 197
>gi|393220621|gb|EJD06107.1| TATA-box binding protein, partial [Fomitiporia mediterranea MF3/22]
Length = 189
Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 99/172 (57%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 17 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 76
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H QFSSYEP
Sbjct: 77 SEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEP 136
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP+VVLLIFV+G+IV+TGAK R E++ AF+ IY VL FKK
Sbjct: 137 ELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFKK 188
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S ++S Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 107 QNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGA 166
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L + P
Sbjct: 167 KVREEIYTAFNTIYTVLCEFKKP 189
>gi|414872052|tpg|DAA50609.1| TPA: TATA-box-binding protein 1(TATA-binding factor 1)(TATA
sequence-binding protein 1) [Zea mays]
Length = 215
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLAEFRK 197
>gi|296482511|tpg|DAA24626.1| TPA: TBP protein-like [Bos taurus]
Length = 303
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 96/171 (56%), Positives = 133/171 (77%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V T+++GC LDL I R +EYNP +F +IM+I PRTT L F SGK++ G K
Sbjct: 131 NVVCTVNLGCKLDLKSIALLARNAEYNPKRFAAVIMRIREPRTTALLFSSGKMVCTGGKS 190
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
E +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H QF+SYEPE
Sbjct: 191 EEQSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEPLVLSHQQFASYEPE 250
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
LFPGL+YRM+KPR+VLLIFV+G++V+TGAK RSE++EAF+NIY +LK F+K
Sbjct: 251 LFPGLVYRMIKPRIVLLIFVSGKVVLTGAKVRSEIYEAFNNIYSILKGFRK 301
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 92 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
++HN+VCT ++ + L ++ + ++ + Y P+ F +I R+ +PR L+F +G++V T
Sbjct: 128 QLHNVVCTVNLGCKLDLKSI-ALLARNAEYNPKRFAAVIMRIREPRTTALLFSSGKMVCT 186
Query: 152 GAKSRSE 158
G KS +
Sbjct: 187 GGKSEEQ 193
>gi|115454423|ref|NP_001050812.1| Os03g0657000 [Oryza sativa Japonica Group]
gi|73919858|sp|Q8W0W4.2|TBP2_ORYSJ RecName: Full=TATA-binding protein 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP-2; AltName:
Full=TATA-binding factor 2; AltName: Full=TATA-box
factor 2; AltName: Full=Transcription initiation factor
TFIID TBP-2 subunit
gi|31415973|gb|AAP50993.1| TATA-binding protein TBP2 [Oryza sativa Japonica Group]
gi|108710181|gb|ABF97976.1| TATA-binding protein 2, putative, expressed [Oryza sativa Japonica
Group]
gi|113549283|dbj|BAF12726.1| Os03g0657000 [Oryza sativa Japonica Group]
gi|215686467|dbj|BAG87728.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 203
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 29 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 88
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 89 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 148
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 149 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 200
>gi|974216|emb|CAA62224.1| TATA-box binding protein [Zea mays]
Length = 215
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLAEFRK 197
>gi|1351224|sp|P48511.1|TBP_MESCR RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|841440|gb|AAA80641.1| TATA-binding protein [Mesembryanthemum crystallinum]
Length = 200
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRK 197
>gi|342879468|gb|EGU80715.1| hypothetical protein FOXB_08755 [Fusarium oxysporum Fo5176]
Length = 254
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 82 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 141
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 142 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 201
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ F+K
Sbjct: 202 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRK 253
>gi|413933539|gb|AFW68090.1| TATA-binding protein2, partial [Zea mays]
Length = 205
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLSEFRK 197
>gi|406862826|gb|EKD15875.1| transcription initiation factor TFIID-2 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 264
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 92 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 151
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 152 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 211
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ FKK
Sbjct: 212 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFKK 263
>gi|324518621|gb|ADY47156.1| TATA-box-binding protein, partial [Ascaris suum]
Length = 384
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 134/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++G PLDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 213 QNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 272
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RK+A+I+++LG K+ FK+ N+V +CDVRFP++L+ L H+QFS+YEP
Sbjct: 273 SEEASRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRFPIQLEGLCLTHTQFSTYEP 332
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKPRVVLLIFV+G++VITGAK + ++ +AF+ IYP+LK FKK
Sbjct: 333 ELFPGLIYRMVKPRVVLLIFVSGKVVITGAKFKKDIDDAFNQIYPILKGFKK 384
>gi|346974478|gb|EGY17930.1| TATA-box-binding protein [Verticillium dahliae VdLs.17]
Length = 249
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 77 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 136
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 137 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 196
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ F+K
Sbjct: 197 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRK 248
>gi|363814312|ref|NP_001242795.1| uncharacterized protein LOC100810213 [Glycine max]
gi|255644444|gb|ACU22726.1| unknown [Glycine max]
Length = 200
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEQQSKLAARKYARIIQKLGFPPKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 197
>gi|170674514|gb|ACB30147.1| TATA binding protein [Epichloe festucae]
Length = 256
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 84 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 143
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 144 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 203
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ F+K
Sbjct: 204 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRK 255
>gi|426200613|gb|EKV50537.1| hypothetical protein AGABI2DRAFT_44722, partial [Agaricus bisporus
var. bisporus H97]
Length = 189
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 17 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 76
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H QFSSYEP
Sbjct: 77 SEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEP 136
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP+VVLLIFV+G+IV+TGAK R E++ AF+ IY VL F+K
Sbjct: 137 ELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRK 188
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S ++S Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 107 QNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGA 166
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L + P
Sbjct: 167 KVREEIYTAFNTIYTVLCEFRKP 189
>gi|358386238|gb|EHK23834.1| hypothetical protein TRIVIDRAFT_89322 [Trichoderma virens Gv29-8]
Length = 253
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 81 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 140
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 141 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 200
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ F+K
Sbjct: 201 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRK 252
>gi|403418333|emb|CCM05033.1| predicted protein [Fibroporia radiculosa]
Length = 317
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 145 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 204
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H QFSSYEP
Sbjct: 205 SEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEP 264
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP+VVLLIFV+G+IV+TGAK R E++ AF+ IY VL F+K
Sbjct: 265 ELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRK 316
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S ++S Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 235 QNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGA 294
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L + P
Sbjct: 295 KVREEIYTAFNTIYTVLCEFRKP 317
>gi|451854730|gb|EMD68022.1| hypothetical protein COCSADRAFT_156488 [Cochliobolus sativus
ND90Pr]
gi|452000886|gb|EMD93346.1| hypothetical protein COCHEDRAFT_1153946 [Cochliobolus
heterostrophus C5]
Length = 249
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 77 QNIVATVNLSARLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKMVVTGAK 136
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI NIV +CD+RFP++L+ L H FSSYEP
Sbjct: 137 SEDDSRLASRKYARIIQKLGFSAKFTDFKIQNIVGSCDIRFPIRLEGLASRHHTFSSYEP 196
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KPR+VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 197 ELFPGLIYRMMKPRIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 248
>gi|310798673|gb|EFQ33566.1| transcription factor TFIID [Glomerella graminicola M1.001]
Length = 256
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 84 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 143
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 144 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 203
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ F+K
Sbjct: 204 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRK 255
>gi|389749066|gb|EIM90243.1| TBP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 301
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 129 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 188
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H QFSSYEP
Sbjct: 189 SEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEP 248
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP+VVLLIFV+G+IV+TGAK R E++ AF+ IY VL F+K
Sbjct: 249 ELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLVEFRK 300
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S ++S Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 219 QNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGA 278
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L + P
Sbjct: 279 KVREEIYTAFNTIYTVLVEFRKP 301
>gi|340517005|gb|EGR47251.1| TATA binding protein [Trichoderma reesei QM6a]
Length = 253
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 81 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 140
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 141 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 200
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ F+K
Sbjct: 201 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRK 252
>gi|320591748|gb|EFX04187.1| RNA polymerase 1 and 3 transcription factor complex component
[Grosmannia clavigera kw1407]
Length = 265
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 93 QNIVATVNLACRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 152
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FPV+L+ L H FSSYEP
Sbjct: 153 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPVRLEGLASRHHNFSSYEP 212
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+ V+TGAK R E+++AF+ IYPVL+ F+K
Sbjct: 213 ELFPGLIYRMIKPKIVLLIFVSGKTVLTGAKVREEIYQAFEMIYPVLQDFRK 264
>gi|409082748|gb|EKM83106.1| hypothetical protein AGABI1DRAFT_111611 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 306
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 134 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 193
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H QFSSYEP
Sbjct: 194 SEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEP 253
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP+VVLLIFV+G+IV+TGAK R E++ AF+ IY VL F+K
Sbjct: 254 ELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRK 305
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S ++S Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 224 QNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGA 283
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L + P
Sbjct: 284 KVREEIYTAFNTIYTVLCEFRKP 306
>gi|408395610|gb|EKJ74788.1| hypothetical protein FPSE_05036 [Fusarium pseudograminearum CS3096]
Length = 254
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 82 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 141
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 142 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 201
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ F+K
Sbjct: 202 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRK 253
>gi|358394886|gb|EHK44279.1| hypothetical protein TRIATDRAFT_300545 [Trichoderma atroviride IMI
206040]
Length = 253
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 81 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 140
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 141 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 200
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ F+K
Sbjct: 201 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRK 252
>gi|402225771|gb|EJU05832.1| TBP-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 235
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 63 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 122
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG ++ FKI NIV +CDV+FP++L+ L + H QFSSYEP
Sbjct: 123 SEDDSRLASRKYARIVQKLGFDTRFVDFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEP 182
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP+VVLLIFV+G+IV+TGAK R E++ AF+ IY VL+ FKK
Sbjct: 183 ELFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLQEFKK 234
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S ++S Y P F GLI ++L P+ L F SGK+++ GA
Sbjct: 153 QNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLTGA 212
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L++ P
Sbjct: 213 KVREEIYTAFNTIYTVLQEFKKP 235
>gi|18481630|gb|AAL73490.1|AF464907_1 TATA-binding protein TBP2 [Oryza sativa]
Length = 203
Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 29 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 88
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 89 SEQQSKLAARKYARIIQKLGFPAKFKDFKIXNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 148
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 149 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 200
>gi|367029935|ref|XP_003664251.1| hypothetical protein MYCTH_2306864 [Myceliophthora thermophila ATCC
42464]
gi|347011521|gb|AEO59006.1| hypothetical protein MYCTH_2306864 [Myceliophthora thermophila ATCC
42464]
Length = 257
Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 85 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 144
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 145 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYEP 204
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ F+K
Sbjct: 205 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRK 256
>gi|302918240|ref|XP_003052617.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733557|gb|EEU46904.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 253
Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 81 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 140
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 141 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 200
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ F+K
Sbjct: 201 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRK 252
>gi|189192825|ref|XP_001932751.1| TATA-box-binding protein [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|330941403|ref|XP_003306059.1| hypothetical protein PTT_19076 [Pyrenophora teres f. teres 0-1]
gi|187978315|gb|EDU44941.1| TATA-box-binding protein [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|311316652|gb|EFQ85856.1| hypothetical protein PTT_19076 [Pyrenophora teres f. teres 0-1]
Length = 249
Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 77 QNIVATVNLSARLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKMVVTGAK 136
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI NIV +CD+RFP++L+ L H FSSYEP
Sbjct: 137 SEDDSRLASRKYARIIQKLGFSAKFTDFKIQNIVGSCDIRFPIRLEGLASRHHTFSSYEP 196
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KPR+VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 197 ELFPGLIYRMMKPRIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 248
>gi|429859533|gb|ELA34313.1| RNA polymerase i and iii transcription factor complex component
[Colletotrichum gloeosporioides Nara gc5]
Length = 256
Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 84 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 143
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 144 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 203
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ F+K
Sbjct: 204 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRK 255
>gi|449296869|gb|EMC92888.1| hypothetical protein BAUCODRAFT_76816 [Baudoinia compniacensis UAMH
10762]
Length = 240
Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 68 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 127
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 128 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHMFSSYEP 187
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 188 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 239
>gi|168003287|ref|XP_001754344.1| TATA-box binding protein, component of TFIID and TFIIIB
[Physcomitrella patens subsp. patens]
gi|162694446|gb|EDQ80794.1| TATA-box binding protein, component of TFIID and TFIIIB
[Physcomitrella patens subsp. patens]
Length = 214
Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C L+L I R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNMDCRLELKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P +++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEQQSKLAARKYARIIQKLGFPAQFKDFKIQNIVGSCDVKFPIRLEGLAYAHGHFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E++EAF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDEIYEAFENIYPVLTEFRK 197
>gi|224145959|ref|XP_002325828.1| global transcription factor group [Populus trichocarpa]
gi|222862703|gb|EEF00210.1| global transcription factor group [Populus trichocarpa]
Length = 201
Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL QI + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 QNIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 86
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 87 SEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 146
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
E+FPGLIYRM +P++VLLIFV+G+IVITGAK R E + AF+NIYPVL F+K
Sbjct: 147 EIFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 198
>gi|392567667|gb|EIW60842.1| TBP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 308
Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 136 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 195
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H QFSSYEP
Sbjct: 196 SEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEP 255
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP+VVLLIFV+G+IV+TGAK R E++ AF+ IY VL F+K
Sbjct: 256 ELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRK 307
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S ++S Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 226 QNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGA 285
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L + P
Sbjct: 286 KVREEIYTAFNTIYTVLCEFRKP 308
>gi|356532171|ref|XP_003534647.1| PREDICTED: TATA-box-binding protein-like [Glycine max]
Length = 200
Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C L+L I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 197
>gi|409046465|gb|EKM55945.1| hypothetical protein PHACADRAFT_256913 [Phanerochaete carnosa
HHB-10118-sp]
Length = 321
Score = 216 bits (549), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 149 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 208
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H QFSSYEP
Sbjct: 209 SEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEP 268
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP+VVLLIFV+G+IV+TGAK R E++ AF+ IY VL F+K
Sbjct: 269 ELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRK 320
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S ++S Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 239 QNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGA 298
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L + P
Sbjct: 299 KVREEIYTAFNTIYTVLCEFRKP 321
>gi|170093960|ref|XP_001878201.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646655|gb|EDR10900.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 189
Score = 216 bits (549), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 17 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 76
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H QFSSYEP
Sbjct: 77 SEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEP 136
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP+VVLLIFV+G+IV+TGAK R E++ AF+ IY VL F+K
Sbjct: 137 ELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRK 188
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S ++S Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 107 QNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGA 166
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L + P
Sbjct: 167 KVREEIYTAFNTIYTVLCEFRKP 189
>gi|367040469|ref|XP_003650615.1| hypothetical protein THITE_2110255 [Thielavia terrestris NRRL 8126]
gi|346997876|gb|AEO64279.1| hypothetical protein THITE_2110255 [Thielavia terrestris NRRL 8126]
Length = 256
Score = 216 bits (549), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 84 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 143
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 144 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYEP 203
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ F+K
Sbjct: 204 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRK 255
>gi|296824240|ref|XP_002850621.1| TATA-box-binding protein [Arthroderma otae CBS 113480]
gi|238838175|gb|EEQ27837.1| TATA-box-binding protein [Arthroderma otae CBS 113480]
Length = 266
Score = 216 bits (549), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 94 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 153
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 154 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 213
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 214 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLTDFRK 265
>gi|389632499|ref|XP_003713902.1| TATA-box-binding protein [Magnaporthe oryzae 70-15]
gi|351646235|gb|EHA54095.1| TATA-box-binding protein [Magnaporthe oryzae 70-15]
gi|440473248|gb|ELQ42063.1| TATA-box-binding protein [Magnaporthe oryzae Y34]
gi|440480212|gb|ELQ60887.1| TATA-box-binding protein [Magnaporthe oryzae P131]
Length = 255
Score = 216 bits (549), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 83 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 142
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 143 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 202
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ F+K
Sbjct: 203 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRK 254
>gi|224123800|ref|XP_002319167.1| global transcription factor group [Populus trichocarpa]
gi|222857543|gb|EEE95090.1| global transcription factor group [Populus trichocarpa]
Length = 202
Score = 216 bits (549), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C L+L QI + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 27 QNIVSTVNLDCKLELKQIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 86
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 87 SEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 146
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IVITGAK R E + AF+NIYPVL F+K
Sbjct: 147 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVREETYTAFENIYPVLTEFRK 198
>gi|302773061|ref|XP_002969948.1| hypothetical protein SELMODRAFT_16705 [Selaginella moellendorffii]
gi|302799318|ref|XP_002981418.1| hypothetical protein SELMODRAFT_37142 [Selaginella moellendorffii]
gi|300150958|gb|EFJ17606.1| hypothetical protein SELMODRAFT_37142 [Selaginella moellendorffii]
gi|300162459|gb|EFJ29072.1| hypothetical protein SELMODRAFT_16705 [Selaginella moellendorffii]
Length = 196
Score = 216 bits (549), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 134/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C L+L I R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 22 QNIVATVNMDCKLELKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 81
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +C+LA+RK+A+I+++LG P +++ FKI NIV +CDVRFP++L+ L H FS+YEP
Sbjct: 82 SEQNCRLAARKYARIIQKLGFPSQFKDFKIQNIVGSCDVRFPIRLEGLAFSHGHFSTYEP 141
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
E+FPGLIYRM +P++VLLIFV+G+IV+TGAK R E++EAF+NIYPVL F+K
Sbjct: 142 EIFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDEIYEAFENIYPVLAEFRK 193
>gi|336367903|gb|EGN96247.1| hypothetical protein SERLA73DRAFT_76226 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380633|gb|EGO21786.1| hypothetical protein SERLADRAFT_410307 [Serpula lacrymans var.
lacrymans S7.9]
Length = 306
Score = 216 bits (549), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 134 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 193
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H QFSSYEP
Sbjct: 194 SEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEP 253
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP+VVLLIFV+G+IV+TGAK R E++ AF+ IY VL F+K
Sbjct: 254 ELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRK 305
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S ++S Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 224 QNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGA 283
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L + P
Sbjct: 284 KVREEIYTAFNTIYTVLCEFRKP 306
>gi|303317340|ref|XP_003068672.1| TATA-box-binding protein, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240108353|gb|EER26527.1| TATA-box-binding protein, putative [Coccidioides posadasii C735
delta SOWgp]
gi|320038620|gb|EFW20555.1| TATA-box binding protein [Coccidioides posadasii str. Silveira]
Length = 252
Score = 216 bits (549), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 80 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 139
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 140 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 199
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 200 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLTDFRK 251
>gi|429962646|gb|ELA42190.1| TATA-box-binding protein [Vittaforma corneae ATCC 50505]
Length = 197
Score = 216 bits (549), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 25 QNVVATVNLNCKLDLRSIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 84
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E K+AS+++AKI+ +LG ++ FKI NIV +CD++F +KL+ L + HS F SYEP
Sbjct: 85 SEKASKMASQRYAKIISKLGFNAQFTDFKIQNIVSSCDLKFCIKLEGLAYAHSNFCSYEP 144
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R +++EAFDNIYPVL ++K
Sbjct: 145 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREDIYEAFDNIYPVLTQYRK 196
>gi|255936921|ref|XP_002559487.1| Pc13g10670 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584107|emb|CAP92136.1| Pc13g10670 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 265
Score = 216 bits (549), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 93 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 152
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 153 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 212
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 213 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 264
>gi|425767263|gb|EKV05837.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Penicillium digitatum PHI26]
gi|425780061|gb|EKV18083.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Penicillium digitatum Pd1]
Length = 263
Score = 216 bits (549), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 91 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 150
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 151 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 210
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 211 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 262
>gi|218193429|gb|EEC75856.1| hypothetical protein OsI_12863 [Oryza sativa Indica Group]
Length = 190
Score = 216 bits (549), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 12 RNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 71
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 72 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 131
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 132 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 183
>gi|295670940|ref|XP_002796017.1| TATA-box-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284150|gb|EEH39716.1| TATA-box-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 265
Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 93 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 152
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 153 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 212
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 213 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLTDFRK 264
>gi|402086781|gb|EJT81679.1| TATA-box-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 255
Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 83 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 142
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 143 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 202
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ F+K
Sbjct: 203 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRK 254
>gi|346323634|gb|EGX93232.1| TATA-box binding protein [Cordyceps militaris CM01]
Length = 264
Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 81 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 140
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 141 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 200
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ F+K
Sbjct: 201 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRK 252
>gi|400597791|gb|EJP65515.1| transcription factor TFIID [Beauveria bassiana ARSEF 2860]
Length = 253
Score = 215 bits (548), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 81 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 140
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 141 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 200
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ F+K
Sbjct: 201 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRK 252
>gi|345560531|gb|EGX43656.1| hypothetical protein AOL_s00215g392 [Arthrobotrys oligospora ATCC
24927]
Length = 257
Score = 215 bits (548), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 85 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 144
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 145 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHHFSSYEP 204
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 205 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLSDFRK 256
>gi|225681638|gb|EEH19922.1| TATA-box-binding protein [Paracoccidioides brasiliensis Pb03]
gi|226288778|gb|EEH44290.1| TATA-box-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 265
Score = 215 bits (548), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 93 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 152
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 153 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 212
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 213 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLTDFRK 264
>gi|315055559|ref|XP_003177154.1| TATA-box-binding protein [Arthroderma gypseum CBS 118893]
gi|311339000|gb|EFQ98202.1| TATA-box-binding protein [Arthroderma gypseum CBS 118893]
Length = 257
Score = 215 bits (548), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 85 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 144
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 145 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 204
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 205 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLTDFRK 256
>gi|453083461|gb|EMF11507.1| transcription initiation factor TFIID, TATA binding protein
[Mycosphaerella populorum SO2202]
Length = 258
Score = 215 bits (548), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 86 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 145
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 146 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHMFSSYEP 205
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 206 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 257
>gi|339961157|pdb|1VTL|E Chain E, Co-Crystal Structure Of Tbp Recognizing The Minor Groove
Of A Tata Element
gi|339961158|pdb|1VTL|F Chain F, Co-Crystal Structure Of Tbp Recognizing The Minor Groove
Of A Tata Element
Length = 186
Score = 215 bits (548), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 14 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 73
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E K+A+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H+ FSSYEP
Sbjct: 74 SEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEP 133
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM P++VLLIFV+G+IVITGAK R E ++AF+NIYPVL F+K
Sbjct: 134 ELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRK 185
>gi|15231241|ref|NP_187953.1| TATA-box-binding protein 1 [Arabidopsis thaliana]
gi|135626|sp|P28147.1|TBP1_ARATH RecName: Full=TATA-box-binding protein 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP-1; AltName:
Full=TATA-binding factor 1; AltName: Full=TATA-box
factor 1; AltName: Full=Transcription initiation factor
TFIID TBP-1 subunit
gi|1943466|pdb|1VOK|A Chain A, Arabidopsis Thaliana Tbp (Dimer)
gi|1943467|pdb|1VOK|B Chain B, Arabidopsis Thaliana Tbp (Dimer)
gi|1943469|pdb|1VOL|B Chain B, Tfiib (Human Core Domain)TBP (A.THALIANA)TATA ELEMENT
Ternary Complex
gi|7245860|pdb|1QN5|A Chain A, Crystal Structure Of The G(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245861|pdb|1QN5|B Chain B, Crystal Structure Of The G(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245866|pdb|1QN6|A Chain A, Crystal Structure Of The T(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245867|pdb|1QN6|B Chain B, Crystal Structure Of The T(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245872|pdb|1QN7|A Chain A, Crystal Structure Of The T(-27) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245873|pdb|1QN7|B Chain B, Crystal Structure Of The T(-27) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245878|pdb|1QN8|A Chain A, Crystal Structure Of The T(-28) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245879|pdb|1QN8|B Chain B, Crystal Structure Of The T(-28) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245884|pdb|1QN9|A Chain A, Crystal Structure Of The C(-29) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245885|pdb|1QN9|B Chain B, Crystal Structure Of The C(-29) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245890|pdb|1QNA|A Chain A, Crystal Structure Of The T(-30) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245891|pdb|1QNA|B Chain B, Crystal Structure Of The T(-30) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245896|pdb|1QNB|A Chain A, Crystal Structure Of The T(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245897|pdb|1QNB|B Chain B, Crystal Structure Of The T(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245902|pdb|1QNC|A Chain A, Crystal Structure Of The A(-31) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245903|pdb|1QNC|B Chain B, Crystal Structure Of The A(-31) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245908|pdb|1QNE|A Chain A, Crystal Structure Of The Adenovirus Major Late Promoter
Tata Box Bound To Wild-Type Tbp (Arabidopsis Thaliana
Tbp Isoform 2).
gi|7245909|pdb|1QNE|B Chain B, Crystal Structure Of The Adenovirus Major Late Promoter
Tata Box Bound To Wild-Type Tbp (Arabidopsis Thaliana
Tbp Isoform 2).
gi|7245938|pdb|1QN3|A Chain A, Crystal Structure Of The C(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245939|pdb|1QN3|B Chain B, Crystal Structure Of The C(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7246010|pdb|1QN4|A Chain A, Crystal Structure Of The T(-24) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7246011|pdb|1QN4|B Chain B, Crystal Structure Of The T(-24) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|11692888|gb|AAG40047.1|AF324696_1 AT3g13445 [Arabidopsis thaliana]
gi|11935207|gb|AAG42019.1|AF327429_1 putative transcription initiation factor TFIID-1 [Arabidopsis
thaliana]
gi|13194816|gb|AAK15570.1|AF349523_1 putative TATA sequence-binding transcription initiation factor
protein [Arabidopsis thaliana]
gi|16548|emb|CAA38743.1| transcription initiation factor II [Arabidopsis thaliana]
gi|9280296|dbj|BAB01751.1| transcription initiation factor TFIID-1 (TATA-box factor 1) (TATA
sequence-binding protein 1) (TBP-1) [Arabidopsis
thaliana]
gi|15451056|gb|AAK96799.1| transcription initiation factor TFIID-1 (TATA-box factor 1) (TATA
sequence-binding protein 1) (TBP-1) [Arabidopsis
thaliana]
gi|18377408|gb|AAL66870.1| transcription initiation factor TFIID-1 [Arabidopsis thaliana]
gi|21537103|gb|AAM61444.1| transcription initiation factor TFIID-1 (TATA sequence-binding
protein 1) [Arabidopsis thaliana]
gi|39545928|gb|AAR28027.1| TBP1 [Arabidopsis thaliana]
gi|225898637|dbj|BAH30449.1| hypothetical protein [Arabidopsis thaliana]
gi|332641834|gb|AEE75355.1| TATA-box-binding protein 1 [Arabidopsis thaliana]
gi|227074|prf||1613452B transcription initiation factor TFIID-2
Length = 200
Score = 215 bits (548), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E K+A+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H+ FSSYEP
Sbjct: 86 SEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM P++VLLIFV+G+IVITGAK R E ++AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRK 197
>gi|3122925|sp|Q12731.1|TBP_EMENI RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|887878|gb|AAB57874.1| TATA-box binding protein [Emericella nidulans]
gi|887880|gb|AAB57876.1| TATA-box binding protein [Emericella nidulans]
Length = 268
Score = 215 bits (548), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 96 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 155
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 156 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 215
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 216 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 267
>gi|255728115|ref|XP_002548983.1| TATA-box binding protein [Candida tropicalis MYA-3404]
gi|240133299|gb|EER32855.1| TATA-box binding protein [Candida tropicalis MYA-3404]
Length = 257
Score = 215 bits (548), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 85 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 144
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV + DV+F ++L+ L H FSSYEP
Sbjct: 145 SEDDSKLASRKYARIIQKLGFNAKFCDFKIQNIVGSTDVKFAIRLEGLAFAHGTFSSYEP 204
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF++IYPVL F+K
Sbjct: 205 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREEIYDAFESIYPVLNEFRK 256
>gi|48374984|gb|AAT42180.1| TATA sequence-binding protein 1 (TBP-1) [Zea mays]
gi|414872054|tpg|DAA50611.1| TPA: TATA sequence-binding protein 1 [Zea mays]
Length = 287
Score = 215 bits (548), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 103 RNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 162
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 163 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 222
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 223 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLAEFRK 274
>gi|330846314|ref|XP_003294984.1| TATA-binding protein [Dictyostelium purpureum]
gi|325074431|gb|EGC28489.1| TATA-binding protein [Dictyostelium purpureum]
Length = 224
Score = 215 bits (548), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 94/173 (54%), Positives = 134/173 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ LDL I R +EYNP +F +IM+I P+TT L F+SGK++ GAK
Sbjct: 46 QNIVSTVNMATELDLKAIALGARNAEYNPKRFAAVIMRIREPKTTALIFKSGKMVCTGAK 105
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E K A+RK+A+I+++L P ++ FKI NIV +CDV+FP+KL+ LH+ H+ F++YEP
Sbjct: 106 SEDASKYAARKYARIIQKLDFPARFTDFKIQNIVGSCDVKFPIKLELLHNAHTSFTNYEP 165
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
E+FPGLIY+M++P+VVLLIFV+G+IV+TGAK R E++EAF+NIYPVL +FKK
Sbjct: 166 EIFPGLIYKMIQPKVVLLIFVSGKIVLTGAKVREEIYEAFENIYPVLTAFKKN 218
>gi|48374976|gb|AAT42173.1| TATA sequence-binding protein 2 (TBP-2) [Zea mays]
gi|413933541|gb|AFW68092.1| TATA-binding protein2 [Zea mays]
Length = 392
Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 173 RNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 232
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 233 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 292
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 293 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLSEFRK 344
>gi|358368366|dbj|GAA84983.1| TATA-box binding protein [Aspergillus kawachii IFO 4308]
Length = 262
Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 90 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 149
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 150 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 209
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 210 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 261
>gi|317036144|ref|XP_001397705.2| TATA-box-binding protein [Aspergillus niger CBS 513.88]
Length = 262
Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 90 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 149
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 150 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 209
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 210 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 261
>gi|390598615|gb|EIN08013.1| TATA-box binding protein, partial [Punctularia strigosozonata
HHB-11173 SS5]
Length = 189
Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 17 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 76
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LA+RK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H QFSSYEP
Sbjct: 77 SEDDSRLAARKYARIIQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEP 136
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP+VVLLIFV+G+IV+TGAK R E++ AF+ IY VL F+K
Sbjct: 137 ELFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREEIYAAFNTIYTVLCEFRK 188
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S ++S Y P F GLI ++L P+ L F SGK+++ GA
Sbjct: 107 QNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLTGA 166
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L + P
Sbjct: 167 KVREEIYAAFNTIYTVLCEFRKP 189
>gi|339961162|pdb|1VTO|A Chain A, 1.9 A Resolution Refined Structure Of Tbp Recognizing The
Minor Groove Of Tataaaag
gi|339961163|pdb|1VTO|B Chain B, 1.9 A Resolution Refined Structure Of Tbp Recognizing The
Minor Groove Of Tataaaag
Length = 190
Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 16 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 75
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E K+A+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H+ FSSYEP
Sbjct: 76 SEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEP 135
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM P++VLLIFV+G+IVITGAK R E ++AF+NIYPVL F+K
Sbjct: 136 ELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRK 187
>gi|68490865|ref|XP_710759.1| hypothetical protein CaO19.9395 [Candida albicans SC5314]
gi|68490947|ref|XP_710721.1| hypothetical protein CaO19.1837 [Candida albicans SC5314]
gi|3334374|sp|O43133.1|TBP_CANAL RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|2708495|gb|AAC49985.1| TATA-binding protein [Candida albicans]
gi|2708497|gb|AAC49986.1| TATA-binding protein [Candida albicans]
gi|46431958|gb|EAK91473.1| hypothetical protein CaO19.1837 [Candida albicans SC5314]
gi|46432000|gb|EAK91511.1| hypothetical protein CaO19.9395 [Candida albicans SC5314]
Length = 238
Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 66 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 125
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV + DV+F ++L+ L H FSSYEP
Sbjct: 126 SEDDSKLASRKYARIIQKLGFNAKFCDFKIQNIVGSTDVKFAIRLEGLAFAHGTFSSYEP 185
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF++IYPVL F+K
Sbjct: 186 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREEIYDAFESIYPVLNEFRK 237
>gi|407927098|gb|EKG20002.1| TATA-box binding protein [Macrophomina phaseolina MS6]
Length = 250
Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 97/173 (56%), Positives = 132/173 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 78 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 137
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 138 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 197
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 198 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRKS 250
>gi|212526960|ref|XP_002143637.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|212526962|ref|XP_002143638.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|212526964|ref|XP_002143639.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|62956011|gb|AAY23352.1| TATA-binding protein [Talaromyces marneffei]
gi|62956013|gb|AAY23353.1| TATA-binding protein [Talaromyces marneffei]
gi|210073035|gb|EEA27122.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|210073036|gb|EEA27123.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|210073037|gb|EEA27124.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
Length = 255
Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 83 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 142
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 143 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 202
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 203 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 254
>gi|225556591|gb|EEH04879.1| transcription initiation factor TFIID-2 [Ajellomyces capsulatus
G186AR]
gi|240273705|gb|EER37225.1| TATA-binding protein [Ajellomyces capsulatus H143]
gi|325087599|gb|EGC40909.1| transcription initiation factor TFIID-2 [Ajellomyces capsulatus
H88]
Length = 262
Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 90 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 149
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 150 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 209
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 210 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLTDFRK 261
>gi|358060360|dbj|GAA93765.1| hypothetical protein E5Q_00411 [Mixia osmundae IAM 14324]
Length = 367
Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 195 QNIVATVNLECKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 254
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG +++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 255 SEDDSRLASRKYARIIQKLGFEAQFKEFKIQNIVGSCDVKFPIRLEGLAYSHGHFSSYEP 314
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP+VVLLIFV+G+IV+TGAK R E++ AF IYPVL F+K
Sbjct: 315 ELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYSAFQLIYPVLSEFRK 366
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S +S Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 285 QNIVGSCDVKFPIRLEGLAYSHGHFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGA 344
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A + +L + P
Sbjct: 345 KVREEIYSAFQLIYPVLSEFRKP 367
>gi|261194208|ref|XP_002623509.1| transcription initiation factor TFIID-2 [Ajellomyces dermatitidis
SLH14081]
gi|239588523|gb|EEQ71166.1| transcription initiation factor TFIID-2 [Ajellomyces dermatitidis
SLH14081]
gi|239606906|gb|EEQ83893.1| transcription initiation factor TFIID-2 [Ajellomyces dermatitidis
ER-3]
gi|327351372|gb|EGE80229.1| hypothetical protein BDDG_03170 [Ajellomyces dermatitidis ATCC
18188]
Length = 262
Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 90 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 149
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 150 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 209
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 210 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLADFRK 261
>gi|452839378|gb|EME41317.1| TATA-box binding-like protein [Dothistroma septosporum NZE10]
Length = 254
Score = 215 bits (547), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 82 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 141
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 142 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHMFSSYEP 201
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 202 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 253
>gi|242782217|ref|XP_002479956.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces stipitatus ATCC 10500]
gi|242782222|ref|XP_002479957.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces stipitatus ATCC 10500]
gi|218720103|gb|EED19522.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces stipitatus ATCC 10500]
gi|218720104|gb|EED19523.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces stipitatus ATCC 10500]
Length = 255
Score = 215 bits (547), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 83 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 142
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 143 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 202
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 203 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 254
>gi|452989027|gb|EME88782.1| hypothetical protein MYCFIDRAFT_209898 [Pseudocercospora fijiensis
CIRAD86]
Length = 260
Score = 214 bits (546), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 88 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 147
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 148 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHMFSSYEP 207
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 208 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 259
>gi|392596142|gb|EIW85465.1| TBP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 295
Score = 214 bits (546), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 123 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 182
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H QFSSYEP
Sbjct: 183 SEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEP 242
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP+VVLLIFV+G+IV+TGAK R E++ AF+ IY VL F+K
Sbjct: 243 ELFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRK 294
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S ++S Y P F GLI ++L P+ L F SGK+++ GA
Sbjct: 213 QNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLTGA 272
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L + P
Sbjct: 273 KVREEIYTAFNTIYTVLCEFRKP 295
>gi|135634|sp|P26354.1|TBP_ACACA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|5593|emb|CAA44843.1| TFIID [Acanthamoeba castellanii]
gi|155636|gb|AAA27712.1| transcription factor [Acanthamoeba castellanii]
gi|155638|gb|AAA27713.1| TFIID [Acanthamoeba castellanii]
gi|440795312|gb|ELR16441.1| TATAbox-binding protein [Acanthamoeba castellanii str. Neff]
Length = 258
Score = 214 bits (546), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL I R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 86 QNIVSTVNLGCKLDLKNIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 145
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RK+A+I+++LG K+ FKI NIV +CDVRFP++L+ L H+ + SYEP
Sbjct: 146 SEEASRLAARKYARIIQKLGFAAKFLDFKIQNIVGSCDVRFPIRLEGLAFAHNHYCSYEP 205
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMV+P++VLLIFV+G+IV+TGAK R E++EAF+NIYPVL +KK
Sbjct: 206 ELFPGLIYRMVQPKIVLLIFVSGKIVLTGAKVREEIYEAFENIYPVLTEYKK 257
>gi|39979630|ref|NP_951014.1| TATA box-binding protein-like protein 2 [Mus musculus]
gi|81870779|sp|Q6SJ95.1|TBPL2_MOUSE RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|38569211|gb|AAR24282.1| TBP-related factor 3 [Mus musculus]
gi|111600530|gb|AAI19161.1| TATA box binding protein like 2 [Mus musculus]
Length = 350
Score = 214 bits (546), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 96/175 (54%), Positives = 137/175 (78%), Gaps = 1/175 (0%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T ++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 175 QLQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKVVCTG 234
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF-SS 120
AK E + +LA+RK+A+++++LG P+++ FKI N+V +CDV+FP++L+ L H QF SS
Sbjct: 235 AKSEEESRLAARKYARVVQKLGFPVRFFNFKIQNMVGSCDVKFPIRLEILALTHRQFSSS 294
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPELFPGLIY+MVKP+VVLLIF +G++V+TGAK RSE++EAF+N+YP+L+SFKK
Sbjct: 295 YEPELFPGLIYKMVKPQVVLLIFASGKVVLTGAKERSEIYEAFENMYPILESFKK 349
>gi|115396162|ref|XP_001213720.1| TATA-box binding protein [Aspergillus terreus NIH2624]
gi|114193289|gb|EAU34989.1| TATA-box binding protein [Aspergillus terreus NIH2624]
Length = 263
Score = 214 bits (546), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 91 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 150
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 151 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 210
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 211 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 262
>gi|392870835|gb|EAS32669.2| TATA-box-binding protein [Coccidioides immitis RS]
Length = 299
Score = 214 bits (546), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 127 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 186
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 187 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 246
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 247 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLTDFRK 298
>gi|268575218|ref|XP_002642588.1| C. briggsae CBR-TBP-1 protein [Caenorhabditis briggsae]
Length = 337
Score = 214 bits (546), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++G PLDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 166 QNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 225
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RK+A+I+++LG K+ F + N+V +CDVRFP++L+ L H+QFS+YEP
Sbjct: 226 SEEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCITHAQFSTYEP 285
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKPRVVLLIFV+G++VITGAK++ ++ +AF IYP+LK FKK
Sbjct: 286 ELFPGLIYRMVKPRVVLLIFVSGKVVITGAKTKKDIDDAFGQIYPILKGFKK 337
>gi|168052908|ref|XP_001778881.1| TATA-box binding protein, component of TFIID and TFIIIB
[Physcomitrella patens subsp. patens]
gi|162669750|gb|EDQ56331.1| TATA-box binding protein, component of TFIID and TFIIIB
[Physcomitrella patens subsp. patens]
Length = 200
Score = 214 bits (546), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL +I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNMDCRLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG ++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEQQSKLAARKYARIIQKLGFQAHFKDFKIQNIVGSCDVKFPIRLEGLAYAHGHFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E++EAF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDEIYEAFENIYPVLTEFRK 197
>gi|119491905|ref|XP_001263447.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Neosartorya fischeri NRRL 181]
gi|119411607|gb|EAW21550.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Neosartorya fischeri NRRL 181]
Length = 264
Score = 214 bits (546), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 92 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 151
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 152 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 211
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 212 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 263
>gi|354503979|ref|XP_003514057.1| PREDICTED: TATA box-binding protein-like protein 2-like [Cricetulus
griseus]
Length = 350
Score = 214 bits (546), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 96/175 (54%), Positives = 137/175 (78%), Gaps = 1/175 (0%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T ++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 175 QLQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALLFSSGKVVCTG 234
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF-SS 120
AK E + +LA+RK+A+++++LG P+K+ FKI N+V +CDV+FP++L+ L H QF SS
Sbjct: 235 AKSEEESRLAARKYARVVQKLGFPVKFFNFKIQNMVGSCDVKFPIRLEILALTHRQFSSS 294
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPELFPGLIY+MV+P+VVLLIF +G++V+TGAK RSE++EAF+N+YP+L+SFKK
Sbjct: 295 YEPELFPGLIYKMVRPQVVLLIFASGKVVLTGAKERSEIYEAFENMYPILESFKK 349
>gi|66819952|ref|XP_643633.1| TATA-binding protein [Dictyostelium discoideum AX4]
gi|166210407|sp|P26355.2|TBP_DICDI RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|60471603|gb|EAL69559.1| TATA-binding protein [Dictyostelium discoideum AX4]
Length = 205
Score = 214 bits (546), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 93/172 (54%), Positives = 134/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ LDL I R +EYNP +F +IM+I P+TT L F+SGK++ GAK
Sbjct: 28 QNIVSTVNMATELDLKAIALGARNAEYNPKRFAAVIMRIREPKTTALIFKSGKMVCTGAK 87
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E + A+RK+A+I+++L P ++ FKI NIV +CDV+FP+KL+ LH+ H+ F++YEP
Sbjct: 88 SEDASRFAARKYARIIQKLDFPARFTDFKIQNIVGSCDVKFPIKLELLHNAHTSFTNYEP 147
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
E+FPGLIY+M++P+VVLLIFV+G+IV+TGAK R E++EAF+NIYPVL +FKK
Sbjct: 148 EIFPGLIYKMIQPKVVLLIFVSGKIVLTGAKVREEIYEAFENIYPVLSAFKK 199
>gi|326471025|gb|EGD95034.1| TATA-box-binding protein [Trichophyton tonsurans CBS 112818]
Length = 257
Score = 214 bits (546), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 85 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 144
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 145 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 204
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 205 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLTDFRK 256
>gi|308467285|ref|XP_003095891.1| CRE-TBP-1 protein [Caenorhabditis remanei]
gi|308244262|gb|EFO88214.1| CRE-TBP-1 protein [Caenorhabditis remanei]
Length = 338
Score = 214 bits (546), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++G PLDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 167 QNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 226
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RK+A+I+++LG K+ F + N+V +CDVRFP++L+ L H+QFS+YEP
Sbjct: 227 SEEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCITHAQFSTYEP 286
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKPRVVLLIFV+G++VITGAK++ ++ +AF IYP+LK FKK
Sbjct: 287 ELFPGLIYRMVKPRVVLLIFVSGKVVITGAKTKKDIDDAFGQIYPILKGFKK 338
>gi|238878530|gb|EEQ42168.1| TATA-box binding protein [Candida albicans WO-1]
Length = 238
Score = 214 bits (546), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 97/173 (56%), Positives = 132/173 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 66 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 125
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV + DV+F ++L+ L H FSSYEP
Sbjct: 126 SEDDSKLASRKYARIIQKLGFNAKFCDFKIQNIVGSTDVKFAIRLEGLAFAHGTFSSYEP 185
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF++IYPVL F+K
Sbjct: 186 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREEIYDAFESIYPVLNEFRKN 238
>gi|241949839|ref|XP_002417642.1| TATA sequence-binding protein, putative; TATA-binding factor,
putative; TATA-box binding protein, putative; TATA-box
factor, putative; transcription initiation factor tfIID
TBP subunit, putative [Candida dubliniensis CD36]
gi|223640980|emb|CAX45328.1| TATA sequence-binding protein, putative [Candida dubliniensis CD36]
Length = 233
Score = 214 bits (546), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 61 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAK 120
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV + DV+F ++L+ L H FSSYEP
Sbjct: 121 SEDDSKLASRKYARIIQKLGFNAKFCDFKIQNIVGSTDVKFAIRLEGLAFAHGTFSSYEP 180
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF++IYPVL F+K
Sbjct: 181 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREEIYDAFESIYPVLNEFRK 232
>gi|115489282|ref|NP_001067128.1| Os12g0580300 [Oryza sativa Japonica Group]
gi|77556288|gb|ABA99084.1| TATA-binding protein 2, putative, expressed [Oryza sativa Japonica
Group]
gi|113649635|dbj|BAF30147.1| Os12g0580300 [Oryza sativa Japonica Group]
gi|215736829|dbj|BAG95758.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 208
Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 34 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 93
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 94 SEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 153
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 154 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 205
>gi|169770491|ref|XP_001819715.1| TATA-box-binding protein [Aspergillus oryzae RIB40]
gi|238487092|ref|XP_002374784.1| transcription factor TFIID [Aspergillus flavus NRRL3357]
gi|83767574|dbj|BAE57713.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220699663|gb|EED56002.1| transcription factor TFIID [Aspergillus flavus NRRL3357]
gi|391867294|gb|EIT76540.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Aspergillus oryzae 3.042]
Length = 263
Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 91 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 150
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 151 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 210
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 211 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 262
>gi|398406521|ref|XP_003854726.1| transcription factor TFIID complex [Zymoseptoria tritici IPO323]
gi|339474610|gb|EGP89702.1| transcription factor TFIID complex [Zymoseptoria tritici IPO323]
Length = 261
Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 89 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 148
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 149 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHMFSSYEP 208
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 209 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 260
>gi|296414351|ref|XP_002836865.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295632706|emb|CAZ81056.1| unnamed protein product [Tuber melanosporum]
Length = 253
Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 81 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 140
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 141 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHHFSSYEP 200
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E++ AF++IYPVL F+K
Sbjct: 201 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYIAFESIYPVLNDFRK 252
>gi|224285248|gb|ACN40350.1| unknown [Picea sitchensis]
Length = 200
Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P ++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEQQSKLAARKYARIIQKLGFPAHFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 197
>gi|3122941|sp|P93348.1|TBP_TOBAC RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|1498162|dbj|BAA13156.1| TATA binding protein (TBP) [Nicotiana tabacum]
Length = 200
Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEQSSKLAARKYARIIQKLGFDAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 197
>gi|217075508|gb|ACJ86114.1| unknown [Medicago truncatula]
Length = 200
Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C L+L I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEVQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 197
>gi|393238580|gb|EJD46116.1| TBP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 305
Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 133 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 192
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H QFSSYEP
Sbjct: 193 SEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEP 252
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP+VVLLIFV+G+IV+TGAK R E++ AF+ IY VL F+K
Sbjct: 253 ELFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREEIYAAFNTIYTVLCEFRK 304
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S ++S Y P F GLI ++L P+ L F SGK+++ GA
Sbjct: 223 QNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLTGA 282
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L + P
Sbjct: 283 KVREEIYAAFNTIYTVLCEFRKP 305
>gi|217075458|gb|ACJ86089.1| unknown [Medicago truncatula]
gi|388502544|gb|AFK39338.1| unknown [Medicago truncatula]
gi|388506912|gb|AFK41522.1| unknown [Medicago truncatula]
Length = 200
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C L+L I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI N+V +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEVQSKLAARKYARIIQKLGFPAKFKDFKIQNVVGSCDVKFPIRLEGLAYSHGTFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 197
>gi|392573053|gb|EIW66195.1| hypothetical protein TREMEDRAFT_41045 [Tremella mesenterica DSM
1558]
Length = 255
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 96/173 (55%), Positives = 131/173 (75%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F ++M+I P+TT L F SGK+++ GAK
Sbjct: 79 QNIVATVNLECRLDLKTIALHARNAEYNPKRFAAVVMRIREPKTTALIFASGKMVVTGAK 138
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 139 SEDDSRLASRKYARIIQKLGFDAKFAEFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 198
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRM+KP+VVLLIFV+G+IV+TGAK R E++ AF+ IY VL F+K
Sbjct: 199 ELFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREEIYMAFNQIYAVLTEFRKD 251
>gi|17555358|ref|NP_498635.1| Protein TBP-1 [Caenorhabditis elegans]
gi|417896|sp|P32085.1|TBP_CAEEL RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|12275988|gb|AAG50207.1|AF303249_1 transcription factor TFIID [Caenorhabditis elegans]
gi|156448|gb|AAA03582.1| TATA-box binding protein [Caenorhabditis elegans]
gi|351061293|emb|CCD69071.1| Protein TBP-1 [Caenorhabditis elegans]
Length = 340
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++G LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 169 QNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 228
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RK+A+I+++LG K+ F + N+V +CDVRFP++L+ L HSQFS+YEP
Sbjct: 229 SEEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCITHSQFSTYEP 288
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKPRVVLLIFV+G++VITGAK++ ++ EAF IYP+LK FKK
Sbjct: 289 ELFPGLIYRMVKPRVVLLIFVSGKVVITGAKTKRDIDEAFGQIYPILKGFKK 340
>gi|222617361|gb|EEE53493.1| hypothetical protein OsJ_36653 [Oryza sativa Japonica Group]
Length = 225
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 34 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 93
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 94 SEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 153
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 154 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 205
>gi|384245994|gb|EIE19486.1| TBP-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 92/172 (53%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 31 QNIVATVNLDCKLDLKTIAQKARNAEYNPKRFAAVIMRIRDPKTTALVFASGKMVCTGAK 90
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E + A+RK+AKI+++L P ++ FKI NIV +CDV+FP++L+ L++ H FSSYEP
Sbjct: 91 SEEHARTAARKYAKIIQKLDFPATFKDFKIQNIVGSCDVKFPIRLEGLNYSHGMFSSYEP 150
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P+VVLLIFV+G++V+TG K R +++EAF++IYPVL+ F+K
Sbjct: 151 ELFPGLIYRMKEPKVVLLIFVSGKVVLTGGKKREDIYEAFESIYPVLQEFRK 202
>gi|388512865|gb|AFK44494.1| unknown [Lotus japonicus]
Length = 200
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C L+L I + R +E+NP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLELKSIALQARNAEFNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEEQSRLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 197
>gi|449278063|gb|EMC86030.1| TATA-box-binding protein [Columba livia]
Length = 301
Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 94/174 (54%), Positives = 131/174 (75%), Gaps = 2/174 (1%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 128 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 187
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ Y
Sbjct: 188 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGXXXXKKML--Y 245
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 246 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 299
>gi|218184579|gb|EEC67006.1| hypothetical protein OsI_33717 [Oryza sativa Indica Group]
Length = 226
Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 135/172 (78%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL +I + R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 50 QNIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAK 109
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 110 SEDHSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 169
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E++ AF+N++PVL ++K
Sbjct: 170 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKYRKEIYAAFENMFPVLTEYRK 221
>gi|125574885|gb|EAZ16169.1| hypothetical protein OsJ_31618 [Oryza sativa Japonica Group]
Length = 224
Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 135/172 (78%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL +I + R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 48 QNIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAK 107
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 108 SEDHSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 167
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E++ AF+N++PVL ++K
Sbjct: 168 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKYRKEIYAAFENMFPVLTEYRK 219
>gi|115482150|ref|NP_001064668.1| Os10g0432300 [Oryza sativa Japonica Group]
gi|78708692|gb|ABB47667.1| TATA-box binding protein 1, putative, expressed [Oryza sativa
Japonica Group]
gi|113639277|dbj|BAF26582.1| Os10g0432300 [Oryza sativa Japonica Group]
Length = 223
Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 135/172 (78%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL +I + R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 48 QNIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGAK 107
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 108 SEDHSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 167
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E++ AF+N++PVL ++K
Sbjct: 168 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKYRKEIYAAFENMFPVLTEYRK 219
>gi|396467023|ref|XP_003837823.1| similar to transcription initiation factor TFIID [Leptosphaeria
maculans JN3]
gi|312214387|emb|CBX94379.1| similar to transcription initiation factor TFIID [Leptosphaeria
maculans JN3]
Length = 246
Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 95/173 (54%), Positives = 131/173 (75%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 74 QNIVATVNLSARLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKMVVTGAK 133
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 134 SEDDSRLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHTFSSYEP 193
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 194 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRKS 246
>gi|169606198|ref|XP_001796519.1| hypothetical protein SNOG_06135 [Phaeosphaeria nodorum SN15]
gi|160706937|gb|EAT85966.2| hypothetical protein SNOG_06135 [Phaeosphaeria nodorum SN15]
Length = 247
Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 75 QNIVATVNLSARLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALVFASGKMVVTGAK 134
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 135 SEDDSRLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHTFSSYEP 194
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 195 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVLSDFRK 246
>gi|297829888|ref|XP_002882826.1| transcription factor IID-1 [Arabidopsis lyrata subsp. lyrata]
gi|297328666|gb|EFH59085.1| transcription factor IID-1 [Arabidopsis lyrata subsp. lyrata]
Length = 200
Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E+ K+A+RK+A+I+++LG K++ FKI NIV +CDV+FP++L+ L + H+ FSSYEP
Sbjct: 86 SEYFSKMAARKYARIVQKLGFSAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM P++VLLIFV+G+IVITGAK R E + AF+NIYPVL F+K
Sbjct: 146 ELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMREETYRAFENIYPVLTEFRK 197
>gi|218187146|gb|EEC69573.1| hypothetical protein OsI_38882 [Oryza sativa Indica Group]
Length = 221
Score = 212 bits (539), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 30 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 89
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 90 SEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 149
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G++V+TGAK R E + AF+NIYPVL F+K
Sbjct: 150 ELFPGLIYRMKQPKIVLLIFVSGKLVLTGAKVRDETYTAFENIYPVLTEFRK 201
>gi|71012922|ref|XP_758541.1| transcription initiation factor TFIID-1 [Ustilago maydis 521]
gi|46098199|gb|EAK83432.1| TF21_MAIZE Transcription initiation factor TFIID-1 (TATA-box factor
1) (TATA sequence-binding protein 1) (TBP-1) [Ustilago
maydis 521]
Length = 189
Score = 212 bits (539), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 17 QNIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 76
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI NIV +CDVRFP++L+ L + H +SSYEP
Sbjct: 77 SEDDSRLASRKYARIIQKLGFEAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGVYSSYEP 136
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP+VVLLIFV+G+IV+TGAK R E+++AF+ I PVL F+K
Sbjct: 137 ELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYQAFNLILPVLAEFRK 188
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S YS Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 107 QNIVGSCDVRFPIRLEGLAYSHGVYSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGA 166
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L + P
Sbjct: 167 KVREEIYQAFNLILPVLAEFRKP 189
>gi|58270288|ref|XP_572300.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans JEC21]
gi|134117708|ref|XP_772488.1| hypothetical protein CNBL1030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255102|gb|EAL17841.1| hypothetical protein CNBL1030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228558|gb|AAW44993.1| general RNA polymerase II transcription factor, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 232
Score = 212 bits (539), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F ++M+I +PRTT L F SGK+++ GAK
Sbjct: 59 QNIVATVNLDCRLDLKTIALHARNAEYNPRRFAAVVMRIRDPRTTALIFASGKMVVTGAK 118
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI N+V +CDV+FP++L+ L H FSSYEP
Sbjct: 119 SEDDSRLASRKYARIIQKLGFEAKFAEFKIQNMVGSCDVKFPIRLEGLAFSHGAFSSYEP 178
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP+VV+LIFV+G+IV+TGAK R E++ AF+ IY VL F+K
Sbjct: 179 ELFPGLIYRMLKPKVVILIFVSGKIVLTGAKVREEIYMAFNQIYSVLLEFRK 230
>gi|242034379|ref|XP_002464584.1| hypothetical protein SORBIDRAFT_01g021297 [Sorghum bicolor]
gi|241918438|gb|EER91582.1| hypothetical protein SORBIDRAFT_01g021297 [Sorghum bicolor]
Length = 218
Score = 212 bits (539), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 44 QNIVSTVNLDCQLDLKMIALQARNAEYNPKRFAAVIMRIREPKTTALVFASGKMVCTGAK 103
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG+P K++ FKI N+V +CDV+FP++L+ L H FS+YEP
Sbjct: 104 SEEHSKLAARKYARIVQKLGYPAKFKDFKIQNMVGSCDVKFPIRLEGLAFSHGAFSNYEP 163
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM P++VLLIFV+G+IV+TGAK R E++ AF+NIYPVL ++K
Sbjct: 164 ELFPGLIYRMKNPKIVLLIFVSGKIVLTGAKVREEIYTAFENIYPVLTEYRK 215
>gi|405124108|gb|AFR98870.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii H99]
Length = 232
Score = 212 bits (539), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F ++M+I +PRTT L F SGK+++ GAK
Sbjct: 59 QNIVATVNLDCRLDLKTIALHARNAEYNPRRFAAVVMRIRDPRTTALIFASGKMVVTGAK 118
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI N+V +CDV+FP++L+ L H FSSYEP
Sbjct: 119 SEDDSRLASRKYARIIQKLGFEAKFAEFKIQNMVGSCDVKFPIRLEGLAFSHGAFSSYEP 178
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP+VV+LIFV+G+IV+TGAK R E++ AF+ IY VL F+K
Sbjct: 179 ELFPGLIYRMLKPKVVILIFVSGKIVLTGAKVREEIYMAFNQIYSVLLEFRK 230
>gi|321264592|ref|XP_003197013.1| TATA-box binding protein (Transcription initiation factor TFIID TBP
subunit) [Cryptococcus gattii WM276]
gi|317463491|gb|ADV25226.1| TATA-box binding protein (Transcription initiation factor TFIID TBP
subunit), putative [Cryptococcus gattii WM276]
Length = 232
Score = 212 bits (539), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F ++M+I +PRTT L F SGK+++ GAK
Sbjct: 59 QNIVATVNLDCRLDLKTIALHARNAEYNPRRFAAVVMRIRDPRTTALIFASGKMVVTGAK 118
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI N+V +CDV+FP++L+ L H FSSYEP
Sbjct: 119 SEDDSRLASRKYARIIQKLGFEAKFAEFKIQNMVGSCDVKFPIRLEGLAFSHGAFSSYEP 178
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KP+VV+LIFV+G+IV+TGAK R E++ AF+ IY VL F+K
Sbjct: 179 ELFPGLIYRMLKPKVVILIFVSGKIVLTGAKVREEIYMAFNQIYSVLLEFRK 230
>gi|89267100|emb|CAJ41964.1| TF21_MAIZE Transcription initiation factor TFIID-1 [Ustilago
hordei]
gi|388856434|emb|CCF49983.1| probable TATA-box-binding factor TBP [Ustilago hordei]
Length = 239
Score = 212 bits (539), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 67 QNIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 126
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI NIV +CDVRFP++L+ L + H +SSYEP
Sbjct: 127 SEDDSRLASRKYARIIQKLGFEAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGVYSSYEP 186
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP+VVLLIFV+G+IV+TGAK R E+++AF+ I PVL F+K
Sbjct: 187 ELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYQAFNLILPVLAEFRK 238
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S YS Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 157 QNIVGSCDVRFPIRLEGLAYSHGVYSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGA 216
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L + P
Sbjct: 217 KVREEIYQAFNLILPVLAEFRKP 239
>gi|343427608|emb|CBQ71135.1| probable TATA-box-binding factor TBP [Sporisorium reilianum SRZ2]
Length = 241
Score = 212 bits (539), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 69 QNIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 128
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI NIV +CDVRFP++L+ L + H +SSYEP
Sbjct: 129 SEDDSRLASRKYARIIQKLGFEAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGVYSSYEP 188
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP+VVLLIFV+G+IV+TGAK R E+++AF+ I PVL F+K
Sbjct: 189 ELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYQAFNLILPVLAEFRK 240
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S YS Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 159 QNIVGSCDVRFPIRLEGLAYSHGVYSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGA 218
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L + P
Sbjct: 219 KVREEIYQAFNLILPVLAEFRKP 241
>gi|401886560|gb|EJT50588.1| TATA-box binding protein (Transcription initiation factor TFIID TBP
subunit) [Trichosporon asahii var. asahii CBS 2479]
gi|406698490|gb|EKD01726.1| TATA-box binding protein (Transcription initiation factor TFIID TBP
subunit) [Trichosporon asahii var. asahii CBS 8904]
Length = 231
Score = 211 bits (538), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 96/173 (55%), Positives = 130/173 (75%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F ++M+I P+TT L F SGK+++ GAK
Sbjct: 58 QNIVATVNLECRLDLKTIALHARNAEYNPKRFAAVVMRIREPKTTALIFASGKMVVTGAK 117
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 118 SEDDSRLASRKYARIIQKLGFDAKFAEFKIQNIVGSCDVKFPIRLEGLAFSHGAFSSYEP 177
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRM+KP+VVLLIFV+G+IV+TGAK R E++ AF IY VL F+K+
Sbjct: 178 ELFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREEIYMAFKQIYSVLVEFRKE 230
>gi|387592277|gb|EIJ87301.1| TATA-box binding protein [Nematocida parisii ERTm3]
gi|387596323|gb|EIJ93945.1| TATA-box binding protein [Nematocida parisii ERTm1]
Length = 189
Score = 211 bits (538), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 135/172 (78%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +I++I PRTT L F SGK+++ GA+
Sbjct: 17 QNIVATVNLCCRLDLKAIALGARNAEYNPKRFAAVIIRIRKPRTTALIFASGKMVVTGAR 76
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D K+A++K++ I+++LG+P+++ FKI NIV +CD +F ++L+ L HS +SSYEP
Sbjct: 77 SEEDSKIAAKKYSIIIRRLGYPVRFTEFKIQNIVSSCDTKFSIRLEGLVFGHSNYSSYEP 136
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLL+FV+G++V+TGAK R E+++AF+NIYPVLK ++K
Sbjct: 137 ELFPGLIYRMVKPKIVLLVFVSGKVVLTGAKHREEIYQAFENIYPVLKQYRK 188
>gi|300701392|ref|XP_002994966.1| hypothetical protein NCER_102344 [Nosema ceranae BRL01]
gi|239603310|gb|EEQ81295.1| hypothetical protein NCER_102344 [Nosema ceranae BRL01]
Length = 199
Score = 211 bits (537), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 93/172 (54%), Positives = 130/172 (75%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R R +EYNP +F +IM+I P+TT L F SGK++I GAK
Sbjct: 27 QNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKVVITGAK 86
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+++++KI+ +LG + FKI NIV +CD +F ++L+ L + HS + SYEP
Sbjct: 87 SEKQSKLAAQRYSKIINKLGFNADFNDFKIQNIVSSCDTKFSIRLEGLAYSHSNYCSYEP 146
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R ++++AF+NIYPVL +KK
Sbjct: 147 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFENIYPVLTQYKK 198
>gi|341900545|gb|EGT56480.1| CBN-TBP-1 protein [Caenorhabditis brenneri]
Length = 337
Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++G LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 166 QNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 225
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RK+A+I+++LG K+ F + N+V +CDVRFP++L+ L H+QFS+YEP
Sbjct: 226 SEEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCITHAQFSTYEP 285
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKPRVVLLIFV+G++VITGAK++ ++ +AF IYP+LK FKK
Sbjct: 286 ELFPGLIYRMVKPRVVLLIFVSGKVVITGAKTKKDIDDAFGQIYPILKGFKK 337
>gi|44969211|gb|AAS49602.1| TATA box-binding protein [Scyliorhinus canicula]
Length = 253
Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 91/163 (55%), Positives = 127/163 (77%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 91 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 150
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
A+ E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 151 ARSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 210
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFD 164
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+
Sbjct: 211 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFE 253
>gi|198427023|ref|XP_002127120.1| PREDICTED: similar to TATA-box binding protein [Ciona intestinalis]
Length = 356
Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 134/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 183 QNIVSTVNLDTKLDLKRIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 242
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E+ +LA+RK+A+++++LG P K+ FKI N+V + DV+FP++L+ L HSQFSSYEP
Sbjct: 243 SENASRLAARKYARVVQKLGFPAKFIDFKIQNMVGSVDVKFPIRLEGLVLAHSQFSSYEP 302
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKPR+VLLIFV+G++V+TGAK +E+ EAF+NIYP+LK ++K
Sbjct: 303 ELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVYNEIEEAFNNIYPILKGYRK 354
>gi|443895156|dbj|GAC72502.1| hypothetical protein PANT_7d00127 [Pseudozyma antarctica T-34]
Length = 238
Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 66 QNIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 125
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG K+ FKI NIV +CDVRFP++L+ L + H +SSYEP
Sbjct: 126 SEDDSRLASRKYARIIQKLGFEAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGVYSSYEP 185
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP+VVLLIFV+G+IV+TGAK R E+++AF+ I PVL F+K
Sbjct: 186 ELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYQAFNLILPVLAEFRK 237
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S YS Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 156 QNIVGSCDVRFPIRLEGLAYSHGVYSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGA 215
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L + P
Sbjct: 216 KVREEIYQAFNLILPVLAEFRKP 238
>gi|401826152|ref|XP_003887170.1| TATA-box binding protein [Encephalitozoon hellem ATCC 50504]
gi|392998328|gb|AFM98189.1| TATA-box binding protein [Encephalitozoon hellem ATCC 50504]
Length = 198
Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 93/172 (54%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R R +EYNP +F +IM+I P+TT L F SGK++I GAK
Sbjct: 26 QNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E K+A++++AKI+ +LG + FKI NIV +CD++F ++L+ L + HS + SYEP
Sbjct: 86 SEKSSKMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R ++++AF+NIYPVL +KK
Sbjct: 146 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQYKK 197
>gi|396081293|gb|AFN82911.1| eukaryotic TATA box binding transcription initiation factor TFIID-1
[Encephalitozoon romaleae SJ-2008]
Length = 198
Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 93/172 (54%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R R +EYNP +F +IM+I P+TT L F SGK++I GAK
Sbjct: 26 QNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E K+A++++AKI+ +LG + FKI NIV +CD++F ++L+ L + HS + SYEP
Sbjct: 86 SEKSSKMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R ++++AF+NIYPVL +KK
Sbjct: 146 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQYKK 197
>gi|322698718|gb|EFY90486.1| TATA binding protein [Metarhizium acridum CQMa 102]
Length = 260
Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/179 (54%), Positives = 133/179 (74%), Gaps = 7/179 (3%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPG-------KFHGLIMKILNPRTTCLAFQSGK 56
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK
Sbjct: 81 QNIVATVNLDCRLDLKTIALHARNAEYNPKMLTFDPKRFAAVIMRIREPKTTALIFASGK 140
Query: 57 LLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 116
+++ GAK E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H
Sbjct: 141 MVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHH 200
Query: 117 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
FSSYEPELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ F+K
Sbjct: 201 NFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRK 259
>gi|378727024|gb|EHY53483.1| TATA-box-binding protein [Exophiala dermatitidis NIH/UT8656]
Length = 268
Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 94/167 (56%), Positives = 128/167 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 88 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 147
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 148 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHPFSSYEP 207
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVL 170
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYP L
Sbjct: 208 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEQIYPTL 254
>gi|380491274|emb|CCF35436.1| TATA-box-binding protein [Colletotrichum higginsianum]
Length = 304
Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 95/168 (56%), Positives = 130/168 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 86 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 145
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 146 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 205
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLK 171
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+
Sbjct: 206 ELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQ 253
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 4 QNMVGTISVGCPLDLNQINSRV-RYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ + P+ L + SR +S Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 176 QNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGA 235
Query: 63 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDAL 111
K + A +L+ P Y +H + RFP + L
Sbjct: 236 KVREEIYQAFEMIYPVLQGQYRP--YHFSSLHQLTV---ARFPQSIKVL 279
>gi|259482151|tpe|CBF76358.1| TPA: TATA-box-binding protein (TATA-box factor)(TATA-binding
factor)(TATA sequence-binding
protein)(TBP)(Transcription initiation factor TFIID TBP
subunit) [Source:UniProtKB/Swiss-Prot;Acc:Q12731]
[Aspergillus nidulans FGSC A4]
Length = 284
Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 95/167 (56%), Positives = 129/167 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 96 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 155
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 156 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 215
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVL 170
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL
Sbjct: 216 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVL 262
>gi|169806112|ref|XP_001827801.1| transcription initiation factor TFIID [Enterocytozoon bieneusi
H348]
gi|161779087|gb|EDQ31113.1| transcription initiation factor TFIID [Enterocytozoon bieneusi
H348]
Length = 233
Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP KF +IM+I P+TT L F SGK+++ GAK
Sbjct: 61 QNVVATVNLNCKLDLKSIALHARNAEYNPKKFAAVIMRIREPKTTALIFASGKMVVTGAK 120
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E ++AS++++KI+++LG + + F + NIV +CD++FP+KL+ L + HS + SYEP
Sbjct: 121 SEKASRIASQRYSKIIQKLGFSVYFDSFTVQNIVSSCDLKFPIKLEGLAYAHSNYCSYEP 180
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R ++ EAF+NIYPVL ++K
Sbjct: 181 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREDIFEAFENIYPVLTQYRK 232
>gi|302663669|ref|XP_003023473.1| hypothetical protein TRV_02367 [Trichophyton verrucosum HKI 0517]
gi|291187474|gb|EFE42855.1| hypothetical protein TRV_02367 [Trichophyton verrucosum HKI 0517]
Length = 275
Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 95/167 (56%), Positives = 129/167 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 85 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 144
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 145 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 204
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVL 170
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL
Sbjct: 205 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVL 251
>gi|67537612|ref|XP_662580.1| TF22_MAIZE Transcription initiation factor TFIID-2 (TATA-box factor
2) (TATA sequence-binding protein 2) (TBP-2)
[Aspergillus nidulans FGSC A4]
gi|40741864|gb|EAA61054.1| TF22_MAIZE Transcription initiation factor TFIID-2 (TATA-box factor
2) (TATA sequence-binding protein 2) (TBP-2)
[Aspergillus nidulans FGSC A4]
Length = 211
Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 95/167 (56%), Positives = 129/167 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 23 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 82
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 83 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 142
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVL 170
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL
Sbjct: 143 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVL 189
>gi|70999782|ref|XP_754608.1| RNA polymerase I and III transcription factor complex component Tbp
[Aspergillus fumigatus Af293]
gi|66852245|gb|EAL92570.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Aspergillus fumigatus Af293]
gi|159127621|gb|EDP52736.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Aspergillus fumigatus A1163]
Length = 283
Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 95/167 (56%), Positives = 129/167 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 92 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 151
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 152 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 211
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVL 170
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL
Sbjct: 212 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVL 258
>gi|159465587|ref|XP_001691004.1| global transcription factor [Chlamydomonas reinhardtii]
gi|158279690|gb|EDP05450.1| global transcription factor [Chlamydomonas reinhardtii]
Length = 325
Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 92/172 (53%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++G LDL +I R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 34 QNVVATVNLGTKLDLKEIAMHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 93
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D + A+R++AKI+++LG P ++ FKI NIV +CDV+FP++L+ L + HS F+SYEP
Sbjct: 94 SEDDSRTAARRYAKIVQKLGFPATFKEFKIQNIVGSCDVKFPIRLEGLAYAHSLFASYEP 153
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G++V+TGAK+R E+++A+ NIYP L +KK
Sbjct: 154 ELFPGLIYRMKQPKIVLLIFVSGKVVLTGAKTRGEIYQAYMNIYPTLIQYKK 205
>gi|121705502|ref|XP_001271014.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Aspergillus clavatus NRRL 1]
gi|119399160|gb|EAW09588.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Aspergillus clavatus NRRL 1]
Length = 273
Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 95/167 (56%), Positives = 129/167 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 92 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 151
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 152 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 211
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVL 170
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL
Sbjct: 212 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVL 258
>gi|134083254|emb|CAK46825.1| unnamed protein product [Aspergillus niger]
gi|350633630|gb|EHA21995.1| hypothetical protein ASPNIDRAFT_210581 [Aspergillus niger ATCC
1015]
Length = 282
Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 95/167 (56%), Positives = 129/167 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 90 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 149
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 150 SEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 209
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVL 170
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL
Sbjct: 210 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFELIYPVL 256
>gi|154284482|ref|XP_001543036.1| TATA-box binding protein [Ajellomyces capsulatus NAm1]
gi|150406677|gb|EDN02218.1| TATA-box binding protein [Ajellomyces capsulatus NAm1]
Length = 268
Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 94/167 (56%), Positives = 129/167 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 90 QNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 149
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLAS+K+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEP
Sbjct: 150 SEDDSKLASKKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEP 209
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVL 170
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL
Sbjct: 210 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVL 256
>gi|290994623|ref|XP_002679931.1| TATA-box binding protein [Naegleria gruberi]
gi|284093550|gb|EFC47187.1| TATA-box binding protein [Naegleria gruberi]
Length = 318
Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 95/173 (54%), Positives = 132/173 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C L L I R +EYNP +F +IM+I P+TT L FQSGK+++ GAK
Sbjct: 136 QNVVSTVNLACELKLKMIALHARNAEYNPKRFAAVIMRIREPKTTALIFQSGKMVVTGAK 195
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E + +LA+RK+A+I+++LG K+ FKI NIV +CDV FPV+L+ L+ H ++SYEP
Sbjct: 196 SEEESRLAARKYARIIQKLGFNAKFTEFKIQNIVGSCDVGFPVRLEGLNCQHHSYASYEP 255
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
E+FPGLIYRMV P+VVLLIFV+G+IV+TGAK R +++AF NIYPVL+ FKK+
Sbjct: 256 EIFPGLIYRMVDPKVVLLIFVSGKIVLTGAKHRDTIYQAFQNIYPVLRDFKKE 308
>gi|302833409|ref|XP_002948268.1| TATA-box binding protein [Volvox carteri f. nagariensis]
gi|300266488|gb|EFJ50675.1| TATA-box binding protein [Volvox carteri f. nagariensis]
Length = 338
Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 92/172 (53%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++G LDL +I R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 13 QNVVATVNLGTKLDLKEIAMHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 72
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D + A+R++AKI+++LG P ++ FKI NIV +CDV+FP++L+ L + HS F+SYEP
Sbjct: 73 SEDDSRTAARRYAKIVQKLGFPATFKEFKIQNIVGSCDVKFPIRLEGLAYAHSLFASYEP 132
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G++V+TGAK+R E+++A+ NIYP L +KK
Sbjct: 133 ELFPGLIYRMKQPKIVLLIFVSGKVVLTGAKTRYEIYQAYMNIYPTLIQYKK 184
>gi|399949933|gb|AFP65589.1| TATA binding protein of transcription factor IID [Chroomonas
mesostigmatica CCMP1168]
Length = 262
Score = 209 bits (532), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 136/173 (78%), Gaps = 1/173 (0%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++G LDL +I + R +EYNP +F ++M+I +P+TT L F SGK++I GAK
Sbjct: 89 QNVVSTVNLGIQLDLKRIALKTRNAEYNPRRFAAVVMRIRDPKTTALIFSSGKMVITGAK 148
Query: 64 HEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E KL +K+A+I++++G+ IK+ FKI NIV +CD +FP++L++L H H+QF SYE
Sbjct: 149 SEETAKLGGKKYARIIQKIGYGHIKFLDFKIQNIVASCDTKFPIRLESLAHAHNQFCSYE 208
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
PELFPGLIYRM+ P+VVLLIFV+G++V+TGAK R+++++AF+NIY VL FKK
Sbjct: 209 PELFPGLIYRMISPKVVLLIFVSGKLVLTGAKQRNDIYQAFNNIYAVLCLFKK 261
>gi|55583664|gb|AAV53354.1| TATA-box binding protein [Volvox carteri f. nagariensis]
Length = 340
Score = 209 bits (531), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 92/172 (53%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++G LDL +I R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 38 QNVVATVNLGTKLDLKEIAMHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 97
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D + A+R++AKI+++LG P ++ FKI NIV +CDV+FP++L+ L + HS F+SYEP
Sbjct: 98 SEDDSRTAARRYAKIVQKLGFPATFKEFKIQNIVGSCDVKFPIRLEGLAYAHSLFASYEP 157
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM +P++VLLIFV+G++V+TGAK+R E+++A+ NIYP L +KK
Sbjct: 158 ELFPGLIYRMKQPKIVLLIFVSGKVVLTGAKTRYEIYQAYMNIYPTLIQYKK 209
>gi|160331843|ref|XP_001712628.1| tfIID [Hemiselmis andersenii]
gi|159766077|gb|ABW98303.1| tfIID [Hemiselmis andersenii]
Length = 267
Score = 208 bits (530), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 95/173 (54%), Positives = 136/173 (78%), Gaps = 1/173 (0%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+S+G LDL +I + R +EYNP +F +IM+I +P+TT L F SGK++I GAK
Sbjct: 94 QNVVSTVSLGIQLDLKRIALKARNAEYNPRRFAAVIMRIRDPKTTALIFSSGKMVITGAK 153
Query: 64 HEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E KL +K+A+I+++LG+ +K+ F+I NIV +CDV+FP++L++L H H+QF SYE
Sbjct: 154 SEEAAKLGCKKYARIIQRLGYGHVKFLDFRIQNIVASCDVKFPIRLESLAHAHNQFCSYE 213
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
PELFPGLIYRM+ P+VVLLIFV+G++V+TGAK R ++++AF+NIY VL FKK
Sbjct: 214 PELFPGLIYRMITPKVVLLIFVSGKLVLTGAKERKDIYQAFNNIYAVLCLFKK 266
>gi|429964398|gb|ELA46396.1| TATA-box-binding protein [Vavraia culicis 'floridensis']
Length = 201
Score = 208 bits (529), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C L+L I R R +EYNP +F +IM+I +P+TT L F SGK++I GAK
Sbjct: 29 QNVVATVNLECRLELKVIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVITGAK 88
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E ++A++K+A+I+ +LG ++ FKI NIV +CD +F ++L+ L + HS F SYEP
Sbjct: 89 SEQASRIAAKKYARIIHKLGFNTQFSDFKIQNIVSSCDTKFNIRLEGLAYAHSNFCSYEP 148
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMV P++VLLIFV+G+IV+TGAK R E+++AF+NIYPVL ++K
Sbjct: 149 ELFPGLIYRMVNPKIVLLIFVSGKIVLTGAKVRDEIYQAFENIYPVLTKYRK 200
>gi|328870425|gb|EGG18799.1| TATA-binding protein [Dictyostelium fasciculatum]
Length = 236
Score = 208 bits (529), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 92/172 (53%), Positives = 135/172 (78%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++G L+L I +EYNP +F +IM+I +P+TT L F+SGK++ GAK
Sbjct: 52 QNIVSTVNMGTELNLKTIALGALNAEYNPKRFAAVIMRIRDPKTTALIFKSGKMVCTGAK 111
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++L P ++ FKI NIV +CDV+FP++L+ L++ H F++YEP
Sbjct: 112 SEEASKLAARKYARIIQKLDFPAIFKDFKIQNIVGSCDVKFPIRLENLNNAHKVFTNYEP 171
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
E+FPGLIY+M++P+VVLLIFV+G+IV+TGAK R E++EAF+NIYPVL SF+K
Sbjct: 172 EIFPGLIYKMIQPKVVLLIFVSGKIVLTGAKVREEIYEAFENIYPVLNSFRK 223
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVR-YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L +N+ + ++ Y P F GLI K++ P+ L F SGK+++ GA
Sbjct: 142 QNIVGSCDVKFPIRLENLNNAHKVFTNYEPEIFPGLIYKMIQPKVVLLIFVSGKIVLTGA 201
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L P
Sbjct: 202 KVREEIYEAFENIYPVLNSFRKP 224
>gi|440494309|gb|ELQ76708.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Trachipleistophora hominis]
Length = 234
Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C L+L I R R +EYNP +F +IM+I +P+TT L F SGK++I GAK
Sbjct: 62 QNVVATVNLECRLELKVIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVITGAK 121
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E ++A++K+A+I+ +LG ++ FKI NIV +CD +F ++L+ L + HS F SYEP
Sbjct: 122 SEQASRIAAKKYARIIHKLGFNTQFSDFKIQNIVSSCDTKFNIRLEGLAYAHSNFCSYEP 181
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMV P++VLLIFV+G+IV+TGAK R E+++AF+NIYPVL ++K
Sbjct: 182 ELFPGLIYRMVNPKIVLLIFVSGKIVLTGAKVRDEIYQAFENIYPVLTKYRK 233
>gi|162605642|ref|XP_001713336.1| TATA binding protein of transcription factor IID [Guillardia theta]
gi|162605926|ref|XP_001713478.1| TATA binding protein of transcription factor IID [Guillardia theta]
gi|162606298|ref|XP_001713179.1| TATA binding protein of transcription factor IID [Guillardia theta]
gi|6690140|gb|AAF24005.1|AF083031_2 TATA binding protein of transcription factor IID [Guillardia theta]
gi|13794403|gb|AAK39780.1|AF083031_144 TATA binding protein of transcription factor IID [Guillardia theta]
gi|4583657|emb|CAB40395.1| TATA binding protein of transcription factor IID [Guillardia theta]
Length = 249
Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 93/175 (53%), Positives = 136/175 (77%), Gaps = 1/175 (0%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
+ QN+V T+S+G LDL +I + R +EYNP +F +IM+I +P+TT L F SGK+++ G
Sbjct: 74 NIQNVVSTVSLGIQLDLKRIALKARNAEYNPRRFAAVIMRIRDPKTTALIFSSGKMVVTG 133
Query: 62 AKHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
AK E ++A +K+A+I+++LG+ K+ F+I NIV +CDVRFP++L++L H H+QF S
Sbjct: 134 AKSEDSARVACKKYARIIQRLGYGHAKFIDFRIQNIVASCDVRFPIRLESLAHAHNQFCS 193
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPELFPGLIYRM+ P+VVLLIFV+G++V+TGAK R+++ +AF NIY VL +KK
Sbjct: 194 YEPELFPGLIYRMITPKVVLLIFVSGKLVLTGAKQRNDIFQAFSNIYSVLCLYKK 248
>gi|256089271|ref|XP_002580736.1| TATA-box binding protein [Schistosoma mansoni]
gi|350646100|emb|CCD59202.1| TATA-box binding protein, putative [Schistosoma mansoni]
Length = 271
Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 94/174 (54%), Positives = 131/174 (75%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+ +GC L+L I R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 79 QLQNIVCTVYLGCKLNLKNIALSARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 138
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+I+++LG ++ FKI N+V +CDVRF ++L+ L QF++Y
Sbjct: 139 AKSEEQARLAARKYARIIQRLGFEAHFKEFKIQNMVGSCDVRFHIRLEGLVLSQGQFATY 198
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM KP++VLL+FV+G+IV+TGAK R E++EAF+NIYP+LK+FKK
Sbjct: 199 EPELFPGLIYRMTKPKIVLLVFVSGKIVLTGAKVREEIYEAFNNIYPILKNFKK 252
>gi|19074223|ref|NP_584829.1| TRANSCRIPTION INITIATION FACTOR TFIID (TFIID-1 [Encephalitozoon
cuniculi GB-M1]
gi|19068865|emb|CAD25333.1| TRANSCRIPTION INITIATION FACTOR TFIID (TFIID-1 [Encephalitozoon
cuniculi GB-M1]
gi|449329027|gb|AGE95302.1| transcription initiation factor tfIId [Encephalitozoon cuniculi]
Length = 198
Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 130/172 (75%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R R +EYNP +F +IM+I P+TT L F SGK++I GAK
Sbjct: 26 QNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E ++A++++AKI+ +LG + FKI NIV +CD++F ++L+ L + HS + SYEP
Sbjct: 86 SEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R ++++AF+NIYPVL +K
Sbjct: 146 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQHRK 197
>gi|358335036|dbj|GAA53489.1| transcription initiation factor TFIID TATA-box-binding protein
[Clonorchis sinensis]
Length = 436
Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+ +GC L+L QI R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 248 QNIVCTVYLGCKLNLKQIALSARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 307
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RK+A+I+++LG ++ FKI N+V +CDVRF ++L+ L QF++YEP
Sbjct: 308 SEERARLAARKYARIIQKLGFEAHFKEFKIQNMVGSCDVRFHIRLEGLVLAQGQFATYEP 367
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM KP++VLLIFV+G+IV+TGAK R E++EAF NIYP+LK+F+K
Sbjct: 368 ELFPGLIYRMTKPKIVLLIFVSGKIVLTGAKVRDEIYEAFRNIYPILKNFRK 419
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QNMVG+ V + L + ++ +++ Y P F GLI ++ P+ L F SGK+++ GA
Sbjct: 338 QNMVGSCDVRFHIRLEGLVLAQGQFATYEPELFPGLIYRMTKPKIVLLIFVSGKIVLTGA 397
Query: 63 KHEHDCKLASRKFAKILKQLGHPIK 87
K + A R ILK P K
Sbjct: 398 KVRDEIYEAFRNIYPILKNFRKPDK 422
>gi|307109595|gb|EFN57833.1| hypothetical protein CHLNCDRAFT_20778 [Chlorella variabilis]
Length = 209
Score = 206 bits (524), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 89/172 (51%), Positives = 131/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P++T L F SGK++ G K
Sbjct: 32 QNVVATVNLECKLDLKNIALHARNAEYNPKRFAAVIMRIREPKSTALIFHSGKMVCTGTK 91
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E + ++ASRK+AKIL++L + + ++ FKI N+V +CDV+FP++L+ L H+ F SYEP
Sbjct: 92 SEQEARIASRKYAKILQKLQYSVSFKEFKIQNMVGSCDVKFPIRLEGLASTHAVFCSYEP 151
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM P++VLLIFV+G++V+TGAK R +++ AF+NIYPVL++F+K
Sbjct: 152 ELFPGLIYRMADPKIVLLIFVSGKVVLTGAKKREDIYRAFENIYPVLQTFRK 203
>gi|402588148|gb|EJW82082.1| TATA box binding protein [Wuchereria bancrofti]
Length = 198
Score = 206 bits (524), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 95/176 (53%), Positives = 131/176 (74%), Gaps = 4/176 (2%)
Query: 4 QNMVGTISVG----CPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLI 59
QN+V T+++G C +I R +EYNP +F +IM+I PRTT L F SGK++
Sbjct: 23 QNIVSTVNLGESLKCAAGFEKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 82
Query: 60 LGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK E +LA+RK+A+I+++LG K+ FK+ N+V +CDVRFP++L+ L H+QFS
Sbjct: 83 TGAKSEESSRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRFPIQLEGLCLTHTQFS 142
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
+YEPELFPGLIYRMVKPRVVLLIFV+G++VITGAK + ++ +AF+ IYP+LK FKK
Sbjct: 143 TYEPELFPGLIYRMVKPRVVLLIFVSGKVVITGAKYKKDIDDAFNQIYPILKGFKK 198
>gi|167899|gb|AAA33256.1| TFIID [Dictyostelium discoideum]
Length = 205
Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 132/172 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ L L I R +EYNP +F +IM+I P+TT L F+SGK++ GAK
Sbjct: 28 QNIVSTVNMATELYLKAIALGARNAEYNPKRFAAVIMRIREPKTTALIFKSGKMVCTGAK 87
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E + A+RK+A+I+++L P ++ FKI NIV +CDV+FP+KL+ LH+ H+ F++YEP
Sbjct: 88 SEDASRFAARKYARIIQKLDFPARFTDFKIQNIVGSCDVKFPIKLELLHNAHTSFTNYEP 147
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
E+FPGLIY+M++P+V+LLIFV+G+IV+TGAK R ++EAF+NIYPVL +FKK
Sbjct: 148 EIFPGLIYKMIQPKVLLLIFVSGKIVLTGAKVREYIYEAFENIYPVLSAFKK 199
>gi|339961266|pdb|3OC3|C Chain C, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
With Tbp
gi|339961267|pdb|3OC3|D Chain D, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
With Tbp
gi|339961268|pdb|3OCI|A Chain A, Crystal Structure Of Tbp (Tata Box Binding Protein)
gi|339961269|pdb|3OCI|B Chain B, Crystal Structure Of Tbp (Tata Box Binding Protein)
Length = 218
Score = 205 bits (522), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 130/172 (75%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R R +EYNP +F +IM+I P+TT L F SGK++I GAK
Sbjct: 46 QNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAK 105
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E ++A++++AKI+ +LG + FKI NIV +CD++F ++L+ L + HS + SYEP
Sbjct: 106 SEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEP 165
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R ++++AF+NIYPVL +K
Sbjct: 166 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQHRK 217
>gi|259090139|pdb|3EIK|A Chain A, Double Stranded Dna Binding Protein
gi|259090140|pdb|3EIK|B Chain B, Double Stranded Dna Binding Protein
Length = 218
Score = 205 bits (522), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 130/172 (75%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R R +EYNP +F +IM+I P+TT L F SGK++I GAK
Sbjct: 46 QNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAK 105
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E ++A++++AKI+ +LG + FKI NIV +CD++F ++L+ L + HS + SYEP
Sbjct: 106 SEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEP 165
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R ++++AF+NIYPVL +K
Sbjct: 166 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQHRK 217
>gi|303389118|ref|XP_003072792.1| eukaryotic TATA box binding transcription initiation factor TFIID-1
[Encephalitozoon intestinalis ATCC 50506]
gi|303301934|gb|ADM11432.1| eukaryotic TATA box binding transcription initiation factor TFIID-1
[Encephalitozoon intestinalis ATCC 50506]
Length = 198
Score = 204 bits (520), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 129/172 (75%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R R +EYNP +F +IM+I P+TT L F SGK++I GAK
Sbjct: 26 QNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E ++A++++AKI+ +LG + FKI NIV +CD++F ++L+ L + HS + SYEP
Sbjct: 86 SEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R +++ AF+NIYPVL +K
Sbjct: 146 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYRAFNNIYPVLIQHRK 197
>gi|44967798|gb|AAS49578.1| TATA box binding protein (TBP)-associated factor [Protopterus
dolloi]
Length = 250
Score = 204 bits (520), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 89/159 (55%), Positives = 123/159 (77%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 92 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 151
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSY
Sbjct: 152 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSY 211
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELH 160
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++
Sbjct: 212 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIY 250
>gi|242039091|ref|XP_002466940.1| hypothetical protein SORBIDRAFT_01g017130 [Sorghum bicolor]
gi|241920794|gb|EER93938.1| hypothetical protein SORBIDRAFT_01g017130 [Sorghum bicolor]
Length = 225
Score = 204 bits (520), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 92/174 (52%), Positives = 133/174 (76%), Gaps = 1/174 (0%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL QI S R +EYNP +F +I++I +P+TT L F SGK++ GAK
Sbjct: 47 QNIVSTVNLGCKLDLQQIASGARNAEYNPKRFAAVIVRIRDPKTTALVFASGKMVCTGAK 106
Query: 64 HEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E +LA RKFA+I+ +LG +++ FKI NIV +CDV+FP++L+ L F++YE
Sbjct: 107 SEEHSRLAGRKFARIVHKLGFQSARFKDFKIQNIVGSCDVKFPIRLEGLALASGTFANYE 166
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
PE+FPGLIYRMV+P++V+LIFV+G+IV+TGAK R E++ AF+NIYP+L F+K+
Sbjct: 167 PEIFPGLIYRMVEPKIVILIFVSGKIVLTGAKVREEIYTAFENIYPMLVQFRKR 220
>gi|402470285|gb|EJW04618.1| TATA-box-binding protein [Edhazardia aedis USNM 41457]
Length = 198
Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 130/172 (75%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++G L L I + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 26 QNVVATVNLGHHLTLQDIAYKTRNAEYNPKRFAAVIMRIREPKTTALIFSSGKMVVTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E A+RKFA+I+++ G P K++ +KI NIV +CD++F V+L+ L +H + SYEP
Sbjct: 86 SEASSMFAARKFARIIQKAGFPAKFKDYKIQNIVSSCDIKFNVRLEGLAFMHGPYCSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IVITGAK+R E+++AF++IYPVL +K
Sbjct: 146 ELFPGLIYRMVKPKIVLLIFVSGKIVITGAKAREEIYQAFESIYPVLTQHRK 197
>gi|46128099|ref|XP_388603.1| hypothetical protein FG08427.1 [Gibberella zeae PH-1]
Length = 290
Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 95/177 (53%), Positives = 131/177 (74%), Gaps = 6/177 (3%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPG------KFHGLIMKILNPRTTCLAFQSGKL 57
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+
Sbjct: 82 QNIVATVNLDCRLDLKTIALHARNAEYNPKVHQTLRRFAAVIMRIREPKTTALIFASGKM 141
Query: 58 LILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQ 117
++ GAK E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H
Sbjct: 142 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 201
Query: 118 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
FSSYEPELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL+ +
Sbjct: 202 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQGLR 258
>gi|320164625|gb|EFW41524.1| Tbpl2 protein [Capsaspora owczarzaki ATCC 30864]
Length = 208
Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 92/173 (53%), Positives = 130/173 (75%), Gaps = 1/173 (0%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T ++G LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 28 QNVVSTANLGVTLDLKTITMQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 87
Query: 64 HEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
EHD + A+RKFAKI++++G+ K+ FKI N+V +CDV+FP++L+ L HS F+SYE
Sbjct: 88 SEHDSREAARKFAKIIQKVGYKNAKFLDFKIQNMVASCDVKFPIRLEGLVLGHSTFASYE 147
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
PE+FPGL+Y MV P+VVLLIFV+G++V+TGAK + ++ AF+NIY VLK +KK
Sbjct: 148 PEIFPGLVYHMVSPKVVLLIFVSGKVVLTGAKEKEQITTAFNNIYAVLKEYKK 200
>gi|255552716|ref|XP_002517401.1| TATA-box binding protein, putative [Ricinus communis]
gi|223543412|gb|EEF44943.1| TATA-box binding protein, putative [Ricinus communis]
Length = 190
Score = 202 bits (514), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 91/171 (53%), Positives = 129/171 (75%), Gaps = 1/171 (0%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R SEYNP +F +IM++ +P+TT L F SGK++ GAK
Sbjct: 18 QNIVSTVNLDCKLDLKDIALHSRNSEYNPRRFSAVIMRLRDPKTTALLFASGKMVCTGAK 77
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA-LHHVHSQFSSYE 122
E K+A+RK+A+I+++LG P K++ FKI NIV +CDV F ++L+ ++ H+ FSSYE
Sbjct: 78 SEAQSKIAARKYARIVQKLGFPAKFKDFKIQNIVASCDVNFRIRLEKFVYSKHAAFSSYE 137
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
PE+FPG+IYRM KP++V+LIFV+G+IVITGAK+R + + AF NIYPVL F
Sbjct: 138 PEIFPGMIYRMTKPKIVMLIFVSGKIVITGAKTREDTYAAFTNIYPVLAGF 188
>gi|330038400|ref|XP_003239586.1| TATA binding protein of transcription factor IID [Cryptomonas
paramecium]
gi|327206510|gb|AEA38688.1| TATA binding protein of transcription factor IID [Cryptomonas
paramecium]
Length = 231
Score = 202 bits (514), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 133/173 (76%), Gaps = 1/173 (0%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++G LDL +I + R +E+NP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 58 QNVVATVNLGIQLDLKRIAIKARNAEFNPRRFAAVIMRIREPKTTALIFSSGKIVVTGAK 117
Query: 64 HEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E ++A +K+ +I+++LG+ K+ F+I NIV +CDVRFP++L++L H H+QF SYE
Sbjct: 118 SEDTSRIACKKYTRIIQRLGYGHAKFLNFRIQNIVASCDVRFPIRLESLAHAHNQFCSYE 177
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
PELFPGLIYRM+ P+VVLLIFV+G++V+TGAK R ++++AF NIY VL F+K
Sbjct: 178 PELFPGLIYRMINPKVVLLIFVSGKLVLTGAKQRKDIYQAFSNIYAVLCLFRK 230
>gi|303283248|ref|XP_003060915.1| transcription elongation-nucleosome displacement protein
[Micromonas pusilla CCMP1545]
gi|226457266|gb|EEH54565.1| transcription elongation-nucleosome displacement protein
[Micromonas pusilla CCMP1545]
Length = 249
Score = 202 bits (513), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 126/172 (73%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R EYNP +F IM+I P+TT L F SGK++ GAK
Sbjct: 47 QNIVATVNLDCKLDLKTIAFHARNVEYNPKRFAAAIMRIRAPKTTALIFSSGKMVCTGAK 106
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E + A+RK+AK++ +LG P +++ FKI N+V +CDV+FP++L+ L H F+ YEP
Sbjct: 107 TEALAREAARKYAKVISKLGFPAQFKEFKIQNMVGSCDVKFPIRLEGLAWSHGHFAQYEP 166
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMV P++VLLIFV+G+IV+TG K R ++++AF+NIYPVL F+K
Sbjct: 167 ELFPGLIYRMVVPKIVLLIFVSGKIVLTGGKKREDIYQAFENIYPVLTEFRK 218
>gi|145352509|ref|XP_001420584.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580819|gb|ABO98877.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 226
Score = 202 bits (513), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 126/172 (73%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R EYNP +F IM+I NP+TT L F SGK++ GAK
Sbjct: 34 QNIVATVNLDCKLDLKTIAFHARNVEYNPKRFAAAIMRIRNPKTTALIFSSGKMVCTGAK 93
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E + A+RK+AK++ +LG P +++ FKI N+V +CDV+FP++L+ L H F+ YEP
Sbjct: 94 TEALAREAARKYAKVIIKLGFPAQFKDFKIQNMVGSCDVQFPIRLEGLAWQHGHFAQYEP 153
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM P++VLLIFV+G+IV+TG K R ++++AF+NIYPVL FKK
Sbjct: 154 ELFPGLIYRMQMPKIVLLIFVSGKIVLTGGKRREDIYQAFENIYPVLTEFKK 205
>gi|307180303|gb|EFN68336.1| TATA-box-binding protein [Camponotus floridanus]
Length = 252
Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/183 (53%), Positives = 130/183 (71%), Gaps = 11/183 (6%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T ++G L LN IN R R SEYNP +F GLIM+I NPR T L F SGKL+ GAK
Sbjct: 69 QNVVSTANLGTELKLNYINIRTRNSEYNPARFTGLIMRIRNPRATALIFSSGKLVCTGAK 128
Query: 64 HEHDCKLASRKFAKILKQLGHPIKY--QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
E+D LA+++FA+I+++LG P+K+ FK+ NIV TCDV+FP+KL+ L+ H Q SY
Sbjct: 129 SENDSFLAAKRFARIIQKLGFPVKFMSDSFKVQNIVATCDVKFPIKLENLYREHPQLCSY 188
Query: 122 EPELFPGLIYRMVKP---------RVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
EPEL+PGLIYR+ P +VVLLIFVNG++V+TGAK+ EL A + +YPVL
Sbjct: 189 EPELYPGLIYRVYIPGNRDNPPISKVVLLIFVNGKVVLTGAKNIDELRNALNLMYPVLMQ 248
Query: 173 FKK 175
++K
Sbjct: 249 YRK 251
>gi|449543430|gb|EMD34406.1| hypothetical protein CERSUDRAFT_97665 [Ceriporiopsis subvermispora
B]
Length = 338
Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/195 (50%), Positives = 134/195 (68%), Gaps = 23/195 (11%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPG----------KFHGLIMKILNPRTTCLAFQ 53
QN+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F
Sbjct: 143 QNIVATVNLDCRLDLKTIALHARNAEYNPKWPDFRVCALQRFAAVIMRIRDPKTTALIFA 202
Query: 54 SGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHH 113
SGK+++ GAK E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L +
Sbjct: 203 SGKMVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAY 262
Query: 114 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAK-------------SRSELH 160
H QFSSYEPELFPGLIYRM+KP+VVLLIFV+G+IV+TGAK SR E++
Sbjct: 263 SHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVKPGFSYREASPPSREEIY 322
Query: 161 EAFDNIYPVLKSFKK 175
AF+ IY VL F+K
Sbjct: 323 TAFNTIYTVLCEFRK 337
>gi|255078440|ref|XP_002502800.1| transcription elongation-nucleosome displacement protein
[Micromonas sp. RCC299]
gi|226518066|gb|ACO64058.1| transcription elongation-nucleosome displacement protein
[Micromonas sp. RCC299]
Length = 240
Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 126/174 (72%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL I R EYNP +F IM+I P+TT L F SGK++ G
Sbjct: 40 QLQNIVATVNLDCKLDLKTIAFHARNVEYNPKRFAAAIMRIRAPKTTALIFSSGKMVCTG 99
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E + A+RK+AK++ +LG P +++ FKI N+V +CDV+FP++L+ L H F+ Y
Sbjct: 100 AKTEALAREAARKYAKVISKLGFPAQFKDFKIQNMVGSCDVKFPIRLEGLAWSHGHFAQY 159
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM P++VLLIFV+G+IV+TG K+R ++++AF+NIYPVL F+K
Sbjct: 160 EPELFPGLIYRMQMPKIVLLIFVSGKIVLTGGKNRDDIYKAFENIYPVLTEFRK 213
>gi|297478910|ref|XP_002690449.1| PREDICTED: TATA-box-binding protein, partial [Bos taurus]
gi|296483816|tpg|DAA25931.1| TPA: TATA box binding protein-like [Bos taurus]
Length = 227
Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 88/155 (56%), Positives = 121/155 (78%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 73 ENIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 132
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYEP
Sbjct: 133 SEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEP 192
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSE 158
ELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E
Sbjct: 193 ELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAE 227
>gi|348686379|gb|EGZ26194.1| hypothetical protein PHYSODRAFT_345098 [Phytophthora sojae]
Length = 255
Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 128/171 (74%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+VGT+ + PLDL I R +EYNP +F +IM++ +P+TT L F SGK++I G
Sbjct: 56 NVVGTVDLKTPLDLKTIALHARNAEYNPKRFSAVIMRLRDPKTTALIFGSGKIVITGGTS 115
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
E C+LA+RKF +++++L P K+ FK+ N++ TCD+RFP++L+ L + H++FSSYEPE
Sbjct: 116 EESCRLAARKFTRVIQKLNFPAKFTEFKVRNVMGTCDIRFPIRLEGLLNDHARFSSYEPE 175
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
LFPGLIY++V+P++ LLIFV+G+IV+ GA+ + LH+A D +YPVL ++K
Sbjct: 176 LFPGLIYKLVEPKLTLLIFVSGKIVLCGARDSNHLHQAIDKMYPVLLQYRK 226
>gi|44967740|gb|AAS49577.1| TATA box binding protein (TBP)-associated factor [Latimeria
chalumnae]
Length = 249
Score = 199 bits (506), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 121/159 (76%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 91 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 150
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H Q SSY
Sbjct: 151 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQSSSY 210
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELH 160
EPELFPGLIYRM+KPR+VLL FV+G++V+TGAK R+E++
Sbjct: 211 EPELFPGLIYRMIKPRIVLLXFVSGKVVLTGAKVRAEIY 249
>gi|428176634|gb|EKX45518.1| hypothetical protein GUITHDRAFT_152740 [Guillardia theta CCMP2712]
Length = 212
Score = 199 bits (505), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 91/171 (53%), Positives = 125/171 (73%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C L+L I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 31 QNIVATVNLNCSLNLKTITLQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 90
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E +LASRKFA+I+++LG K+ FKI NIV +CDVRFP++L+ L + H + SYEP
Sbjct: 91 SEESARLASRKFARIIQKLGFSAKFTEFKIQNIVGSCDVRFPIRLEKLAYAHQNYCSYEP 150
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
ELFPGLIYRM+ P+VVLLIFV+G+IV+TGAK++ ++ AF IY L FK
Sbjct: 151 ELFPGLIYRMLVPKVVLLIFVSGKIVLTGAKNKRDIDIAFRTIYHTLHEFK 201
>gi|301112330|ref|XP_002905244.1| TATA-box-binding protein [Phytophthora infestans T30-4]
gi|262095574|gb|EEY53626.1| TATA-box-binding protein [Phytophthora infestans T30-4]
Length = 251
Score = 199 bits (505), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 128/171 (74%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+VGT+ + PLDL I R +EYNP +F +IM++ +P+TT L F SGK++I G
Sbjct: 52 NVVGTVDLKTPLDLKTIALHARNAEYNPKRFSAVIMRLRDPKTTALIFGSGKIVITGGTS 111
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
E C+LA+RKF +++++L P K+ FK+ N++ TCD+RFP++L+ L + H++FSSYEPE
Sbjct: 112 EDSCRLAARKFTRVIQKLNFPAKFTEFKVRNVMGTCDIRFPIRLEGLLNDHARFSSYEPE 171
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
LFPGLIY++V+P++ LLIFV+G+IV+ GA+ + LH+A D +YPVL ++K
Sbjct: 172 LFPGLIYKLVEPKLTLLIFVSGKIVLCGARDSNHLHQAIDKMYPVLLQYRK 222
>gi|14423952|sp|Q9NHP5.1|TBP_DROVI RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|8050582|gb|AAF71711.1|AF220262_1 TATA box-binding protein [Drosophila virilis]
Length = 349
Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 92/173 (53%), Positives = 127/173 (73%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 176 QNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAPVIMRIREPRTTALIFSSGKMVCTGAK 235
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LA+RK+A+I+++LG K+ KI N+V CDV+FP++L+ L H FS YEP
Sbjct: 236 GEDDSRLAARKYARIIQKLGFRAKFLDLKIQNMVGLCDVKFPIRLEGLVLTHCNFSRYEP 295
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRMV+PR+VLL+ G++V+TGAK R E+++AFD I+ +LK FKKQ
Sbjct: 296 ELFPGLIYRMVRPRIVLLLPAPGKVVLTGAKVRQEIYDAFDKIFSILKKFKKQ 348
>gi|256084656|ref|XP_002578543.1| TATA-box binding protein [Schistosoma mansoni]
gi|353228683|emb|CCD74854.1| putative tata-box binding protein [Schistosoma mansoni]
Length = 211
Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 128/171 (74%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
NMV T+ +GCP++L ++ VR +EYNP +F G++M++ PR TCL F +G+++ GA+
Sbjct: 39 NMVSTVDLGCPIELRKLVLHVRSAEYNPRRFPGVVMRLREPRVTCLVFGTGRMVCTGARS 98
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
E D L SRK A+IL++LG +K+ F I N+V D++FP++L+ + + Q + YEPE
Sbjct: 99 ESDANLGSRKCARILQRLGFDVKFMNFTIQNMVGLADLKFPIRLEGVQLANEQMTQYEPE 158
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
+FP LIYR++KPR+V+LIFVNG+IV+TGAKSR L+EA +N+YP+L +++K
Sbjct: 159 IFPALIYRIIKPRLVMLIFVNGKIVMTGAKSREHLYEALNNVYPILYNYRK 209
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
IHN+V T D+ P++L L +H + + Y P FPG++ R+ +PRV L+F GR+V TG
Sbjct: 37 IHNMVSTVDLGCPIELRKL-VLHVRSAEYNPRRFPGVVMRLREPRVTCLVFGTGRMVCTG 95
Query: 153 AKSRSELH 160
A+S S+ +
Sbjct: 96 ARSESDAN 103
>gi|309252549|gb|ADO60139.1| TATA-binding protein, partial [Beauveria bassiana]
Length = 159
Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 88/159 (55%), Positives = 121/159 (76%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 1 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 60
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
E D KLASRK+A+I+++LG K+ FKI NIV +CD++FP++L+ L H FSSYEPE
Sbjct: 61 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 120
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAF 163
LFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++A
Sbjct: 121 LFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAL 159
>gi|260830471|ref|XP_002610184.1| hypothetical protein BRAFLDRAFT_121529 [Branchiostoma floridae]
gi|229295548|gb|EEN66194.1| hypothetical protein BRAFLDRAFT_121529 [Branchiostoma floridae]
Length = 320
Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 123/157 (78%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL +I R +EYNP +F +IM+I +PRTT L F SGK++ G
Sbjct: 156 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRDPRTTALIFSSGKMVCTG 215
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H+QFSSY
Sbjct: 216 AKSEDQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHAQFSSY 275
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSE 158
EPELFPGLIYRMVKPR+VLLIFV+G++V+TGA++ +E
Sbjct: 276 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAQACAE 312
>gi|313226921|emb|CBY22066.1| unnamed protein product [Oikopleura dioica]
Length = 155
Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 122/153 (79%)
Query: 24 RVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG 83
R R +EYNP +F +IM+I PRTT L F SGK++ GAK E +LA+RK+A+++++LG
Sbjct: 2 RARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEKSRLAARKYARVIQKLG 61
Query: 84 HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIF 143
P K++ FKI N+V + DV+F ++L+ L H+QF+S+EPELFPGL+YRM+KP++VLLIF
Sbjct: 62 FPAKFKDFKIQNMVGSVDVKFAIRLEQLVLNHAQFTSFEPELFPGLVYRMIKPKLVLLIF 121
Query: 144 VNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
V+G++V+TGAK R E+ +AF+NIYP+L+ F+KQ
Sbjct: 122 VSGKVVLTGAKQRKEIDDAFNNIYPILRKFRKQ 154
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QNMVG++ V + L Q + + +++ + P F GL+ +++ P+ L F SGK+++ GA
Sbjct: 72 QNMVGSVDVKFAIRLEQLVLNHAQFTSFEPELFPGLVYRMIKPKLVLLIFVSGKVVLTGA 131
Query: 63 KHEHDCKLASRKFAKILKQL 82
K + A IL++
Sbjct: 132 KQRKEIDDAFNNIYPILRKF 151
>gi|196001097|ref|XP_002110416.1| hypothetical protein TRIADDRAFT_22173 [Trichoplax adhaerens]
gi|190586367|gb|EDV26420.1| hypothetical protein TRIADDRAFT_22173 [Trichoplax adhaerens]
Length = 220
Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/172 (53%), Positives = 127/172 (73%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T ++ C L L I S+ R +EYNP +F LIM+I +P+TT L F SGK++ GAK
Sbjct: 36 QNVVSTFNLKCSLKLRDIASKARNAEYNPKRFAALIMRIRDPKTTALIFSSGKIVCAGAK 95
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+LA+RK A+I+++LG+P K+ F+I NIV +CDV+F + L+ L HS F SYEP
Sbjct: 96 SPELSRLAARKHARIIQKLGYPAKFTQFQIQNIVGSCDVKFHISLEGLVVTHSHFCSYEP 155
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMV+P+VVLL+FV+G+IV+TGAK ++ EAF IYP+L++F K
Sbjct: 156 ELFPGLIYRMVQPKVVLLVFVSGKIVLTGAKVEEDILEAFKKIYPMLRAFMK 207
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V + L + + + Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 126 QNIVGSCDVKFHISLEGLVVTHSHFCSYEPELFPGLIYRMVQPKVVLLVFVSGKIVLTGA 185
Query: 63 KHEHDCKLASRKFAKILKQLGHPIK 87
K E D A +K +L+ P K
Sbjct: 186 KVEEDILEAFKKIYPMLRAFMKPQK 210
>gi|405952231|gb|EKC20068.1| TATA-box-binding protein [Crassostrea gigas]
Length = 452
Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/169 (55%), Positives = 124/169 (73%), Gaps = 5/169 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL +I R +EYNP +F +IM+I PRTT L F SGK++ GAK
Sbjct: 100 QNIVCTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 159
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG K+ FKI N+V +CDV+FP++L+ L H QFSSYEP
Sbjct: 160 SEDQAKLAARKYARIVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 219
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKS-----RSELHEAFDNIY 167
ELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E+ E N+Y
Sbjct: 220 ELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKDWEYAMRREMQEIVPNLY 268
>gi|226466670|emb|CAX69470.1| TATA box binding protein like 2 [Schistosoma japonicum]
Length = 212
Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 128/171 (74%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
NMV T+ +GCP++L ++ VR +EYNP +F G+++++ PR TCL F +G+++ GA+
Sbjct: 40 NMVSTVDLGCPIELRKLVLHVRSAEYNPRRFPGVVIRLREPRVTCLVFGTGRMVCTGARS 99
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
E D L SRK A+I+++LG +K+ F I N+V D+RFPV+L+ + + Q + YEPE
Sbjct: 100 EADANLGSRKCARIIQKLGFDVKFMNFTIQNMVGLADLRFPVRLEGVQLANEQMTQYEPE 159
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
+FP LIYR++KPR+V+LIFVNG++V+TGAKSR L+EA +N+YP+L +++K
Sbjct: 160 IFPALIYRIIKPRLVMLIFVNGKVVMTGAKSREHLYEALNNVYPILYNYRK 210
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
IHN+V T D+ P++L L +H + + Y P FPG++ R+ +PRV L+F GR+V TG
Sbjct: 38 IHNMVSTVDLGCPIELRKL-VLHVRSAEYNPRRFPGVVIRLREPRVTCLVFGTGRMVCTG 96
Query: 153 AKSRSELH 160
A+S ++ +
Sbjct: 97 ARSEADAN 104
>gi|443925999|gb|ELU44748.1| transcription initiation factor TFIID-1 [Rhizoctonia solani AG-1
IA]
Length = 985
Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats.
Identities = 88/155 (56%), Positives = 120/155 (77%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V T+++ C LDL I R +EYNP +F +IM+I +P+TT L F SGK+++ GAK
Sbjct: 73 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKS 132
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
E D +LASRK+A+I+++LG K+ FKI NIV +CDV+FP++L+ L + H QFSSYEPE
Sbjct: 133 EDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPE 192
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSEL 159
LFPGLIYRM+KP+VVLLIFV+G+IV+TGAK + L
Sbjct: 193 LFPGLIYRMLKPKVVLLIFVSGKIVLTGAKPMAPL 227
>gi|440902256|gb|ELR53068.1| TATA-box-binding protein, partial [Bos grunniens mutus]
Length = 247
Score = 195 bits (496), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 120/156 (76%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V T+++GC LDL I R +EYNP +F +IM+I PRTT L F SGK++ G K
Sbjct: 92 NVVCTVNLGCKLDLKSIALLARNAEYNPKRFAAVIMRIREPRTTALLFSSGKMVCTGGKS 151
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
E +LA+RK+A+I+++LG P K+ FKI N+V +CDV+FP++L+ L H QF+SYEPE
Sbjct: 152 EEQSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEPLVLSHQQFASYEPE 211
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELH 160
LFPGL+YRM+KPR+VLLIFV+G++V+TGAK RSE++
Sbjct: 212 LFPGLVYRMIKPRIVLLIFVSGKVVLTGAKVRSEIY 247
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 92 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
++HN+VCT ++ + L ++ + ++ + Y P+ F +I R+ +PR L+F +G++V T
Sbjct: 89 QLHNVVCTVNLGCKLDLKSI-ALLARNAEYNPKRFAAVIMRIREPRTTALLFSSGKMVCT 147
Query: 152 GAKSRSE 158
G KS +
Sbjct: 148 GGKSEEQ 154
>gi|118352110|ref|XP_001009328.1| TATA-box binding protein [Tetrahymena thermophila]
gi|89291095|gb|EAR89083.1| TATA-box binding protein [Tetrahymena thermophila SB210]
Length = 246
Score = 195 bits (496), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 86/173 (49%), Positives = 127/173 (73%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ LDL QI R R +EYNP +F +IM++ +P+TT L F SGK++ GAK
Sbjct: 54 QNIVSTVNLSTKLDLKQIALRARNAEYNPKRFAAVIMRLRDPKTTALIFASGKMVCTGAK 113
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D A+RK+AKI++++G P++++ FKI NIV + DV+FP+ LD L H +F YEP
Sbjct: 114 TEEDSNRAARKYAKIIQKIGFPVQFKDFKIQNIVGSTDVKFPINLDHLEQDHKKFVQYEP 173
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
E+FPGLIYR ++VLLIFV+G+IV+TGAK+R +++AF IY VL +++K+
Sbjct: 174 EIFPGLIYREFNTKIVLLIFVSGKIVLTGAKTRENINKAFQKIYWVLYNYQKK 226
>gi|76155499|gb|AAX26791.2| SJCHGC06425 protein [Schistosoma japonicum]
Length = 227
Score = 195 bits (496), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 128/171 (74%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
NMV T+ +GCP++L ++ VR +EYNP +F G+++++ PR TCL F +G+++ GA+
Sbjct: 55 NMVSTVDLGCPIELRKLVLHVRSAEYNPRRFPGVVIRLREPRVTCLVFGTGRMVCTGARS 114
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
E D L SRK A+I+++LG +K+ F I N+V D+RFPV+L+ + + Q + YEPE
Sbjct: 115 EADANLGSRKCARIIQKLGFDVKFMNFTIQNMVGLADLRFPVRLEGVQLANEQMTQYEPE 174
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
+FP LIYR++KPR+V+LIFVNG++V+TGAKSR L+EA +N+YP+L +++K
Sbjct: 175 IFPALIYRIIKPRLVMLIFVNGKVVMTGAKSREHLYEALNNVYPILYNYRK 225
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
IHN+V T D+ P++L L +H + + Y P FPG++ R+ +PRV L+F GR+V TG
Sbjct: 53 IHNMVSTVDLGCPIELRKL-VLHVRSAEYNPRRFPGVVIRLREPRVTCLVFGTGRMVCTG 111
Query: 153 AKSRSE 158
A+S ++
Sbjct: 112 ARSEAD 117
>gi|167518271|ref|XP_001743476.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778575|gb|EDQ92190.1| predicted protein [Monosiga brevicollis MX1]
Length = 181
Score = 195 bits (496), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 129/173 (74%), Gaps = 1/173 (0%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T++ C LDL I + R +EY+P +F +IM+I P TT L F SGK++ GAK
Sbjct: 8 RNLVATVTFNCKLDLKHIANNARNAEYSPKRFSAVIMRIREPHTTALIFSSGKMICTGAK 67
Query: 64 HEHDCKLASRKFAKILKQLGH-PIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E D A+RK+A+I+K+LG+ ++++ F+I N+V +CDVRFP++L+ L H F +YE
Sbjct: 68 SEDDAWRATRKYAQIIKKLGYGELRHENFQIQNMVGSCDVRFPIRLEGLAANHQCFCTYE 127
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
PE+FPGL+YRMVKP+VVLLIFV+G++V+TGAKSR +H+A + IY +L+ F+K
Sbjct: 128 PEIFPGLVYRMVKPKVVLLIFVSGKVVVTGAKSRQTIHDAINAIYSILQQFRK 180
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVR-YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QNMVG+ V P+ L + + + + Y P F GL+ +++ P+ L F SGK+++ GA
Sbjct: 99 QNMVGSCDVRFPIRLEGLAANHQCFCTYEPEIFPGLVYRMVKPKVVLLIFVSGKVVVTGA 158
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K A IL+Q P
Sbjct: 159 KSRQTIHDAINAIYSILQQFRKP 181
>gi|302508189|ref|XP_003016055.1| hypothetical protein ARB_05452 [Arthroderma benhamiae CBS 112371]
gi|291179624|gb|EFE35410.1| hypothetical protein ARB_05452 [Arthroderma benhamiae CBS 112371]
Length = 295
Score = 195 bits (496), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 95/191 (49%), Positives = 129/191 (67%), Gaps = 24/191 (12%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPG------------------------KFHGLI 39
QN+V T+++ C LDL I R +EYNP +F +I
Sbjct: 85 QNIVATVNLDCRLDLKTIALHARNAEYNPKVGAGEVACLLFSFHTQVKIYILFVRFAAVI 144
Query: 40 MKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCT 99
M+I P+TT L F SGK+++ GAK E D KLASRK+A+I+++LG K+ FKI NIV +
Sbjct: 145 MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGS 204
Query: 100 CDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSEL 159
CD++FP++L+ L H FSSYEPELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+
Sbjct: 205 CDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEI 264
Query: 160 HEAFDNIYPVL 170
++AF+ IYPVL
Sbjct: 265 YQAFEMIYPVL 275
>gi|47217167|emb|CAG11003.1| unnamed protein product [Tetraodon nigroviridis]
Length = 283
Score = 194 bits (494), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 85/142 (59%), Positives = 116/142 (81%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKI 93
+F +IM+I PRTT L F SGK++ GAK E +LA+RK+A+++++LG P K+ FKI
Sbjct: 140 RFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKI 199
Query: 94 HNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGA 153
N+V +CDVRFP++L+ L H QFSSYEPELFPGLIYRM+KPR+VLLIFV+G++V+TGA
Sbjct: 200 QNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGA 259
Query: 154 KSRSELHEAFDNIYPVLKSFKK 175
K R+E++EAF+NIYP+LK F+K
Sbjct: 260 KVRAEIYEAFENIYPILKGFRK 281
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QNMVG+ V P+ L + + ++S Y P F GLI +++ PR L F SGK+++ GA
Sbjct: 200 QNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGA 259
Query: 63 KHEHDCKLASRKFAKILK 80
K + A ILK
Sbjct: 260 KVRAEIYEAFENIYPILK 277
>gi|255579166|ref|XP_002530430.1| TATA-box binding protein, putative [Ricinus communis]
gi|223530038|gb|EEF31961.1| TATA-box binding protein, putative [Ricinus communis]
Length = 193
Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 127/173 (73%), Gaps = 1/173 (0%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+ T+++ C LDL +I SEY+P +F + M+I +P+TT L F SG+++ GAK
Sbjct: 21 QNIASTVNLDCKLDLKRIALHSLNSEYDPKRFSAVTMRIRHPQTTALIFASGRVVCTGAK 80
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA-LHHVHSQFSSYE 122
E D KLA RKFA+I+++LG P K++ FKI NIV +CD++FP++L+ ++ H+ FS YE
Sbjct: 81 TEEDSKLAMRKFARIVQKLGFPAKFKDFKIQNIVASCDMKFPLRLEKFIYTKHAAFSRYE 140
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
P++FPGLIYRM + R+++LIFV+G++VITGAK E AFDNIYPVL FK+
Sbjct: 141 PDVFPGLIYRMKESRIIMLIFVSGKVVITGAKKTDEAFAAFDNIYPVLAGFKR 193
>gi|331686250|gb|AED87005.1| tata box binding protein [Stylonychia lemnae]
Length = 285
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 128/174 (73%), Gaps = 1/174 (0%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T ++G LDL +I R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 104 QNIVSTANLGIKLDLRKIALNCRNAEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTGAK 163
Query: 64 HEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E K A++K++K +K++G + Q FKI NIV +CDVRFP+ L++L H +FS YE
Sbjct: 164 SEEFSKDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVRFPISLESLSQEHDKFSQYE 223
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
PE+FPGLIYRM P++VLLIF +G+IV+TGAK+++++ AF+NIYPVL+ FK++
Sbjct: 224 PEIFPGLIYRMANPKIVLLIFASGKIVLTGAKNKNDITLAFNNIYPVLQKFKRR 277
>gi|3122945|sp|Q27850.1|TBP_TETTH RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|349811|gb|AAC14470.1| TATA-binding protein [Tetrahymena thermophila]
Length = 246
Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 126/173 (72%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ LDL QI R R +EYNP +F +IM++ +P+TT L F SGK++ GAK
Sbjct: 54 QNIVSTVNLSTKLDLKQIALRARNAEYNPKRFAAVIMRLRDPKTTALIFASGKMVCTGAK 113
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D A+RK+AKI++++G P++++ FKI NIV + DV+FP+ LD L H +F YEP
Sbjct: 114 TEEDSNRAARKYAKIIQKIGFPVQFKDFKIQNIVGSTDVKFPINLDHLEQDHKKFVQYEP 173
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
E+FPG IYR ++VLLIFV+G+IV+TGAK+R +++AF IY VL +++K+
Sbjct: 174 EIFPGKIYREFNTKIVLLIFVSGKIVLTGAKTRENINKAFQKIYWVLYNYQKK 226
>gi|164656154|ref|XP_001729205.1| hypothetical protein MGL_3672 [Malassezia globosa CBS 7966]
gi|159103095|gb|EDP41991.1| hypothetical protein MGL_3672 [Malassezia globosa CBS 7966]
Length = 257
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 88/152 (57%), Positives = 117/152 (76%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ LDL I R +EYNP +F +IM+I P+TT L F SGK++I GAK
Sbjct: 78 QNIVATVNLEARLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAK 137
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LASRK+A+I+++LG ++ FKI NIV +CDVRFP++L+ L + H +SSYEP
Sbjct: 138 SEDDSRLASRKYARIIQKLGFEARFSEFKIQNIVGSCDVRFPIRLEGLAYSHGVYSSYEP 197
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKS 155
ELFPGLIYRMVKP+VVLLIFV+G+IV+TGAKS
Sbjct: 198 ELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKS 229
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 28/159 (17%)
Query: 10 ISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCK 69
+S L L Q ++V S+ + K L + NP T+ E D
Sbjct: 1 MSSSGSLQLPQAQAKVTSSDASQQKPLALPTQSKNPDTSSQ----------NTADEDD-- 48
Query: 70 LASRKFAKILKQLGHPIKYQGFK--------IHNIVCTC--DVRFPVKLDALHHVHSQFS 119
+ K + + PI Q + NIV T + R +K ALH +++
Sbjct: 49 ---KSAVKDTQSIPAPITEQTLSNMHGIVPTLQNIVATVNLEARLDLKTIALHARNAE-- 103
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSE 158
Y P+ F +I R+ +P+ LIF +G++VITGAKS +
Sbjct: 104 -YNPKRFAAVIMRIREPKTTALIFASGKMVITGAKSEDD 141
>gi|413933837|gb|AFW68388.1| hypothetical protein ZEAMMB73_647229, partial [Zea mays]
Length = 189
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 129/174 (74%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
+ QN+V T+++ C +DL + + R +EYNP +F IM+I P+TT L F +GK++ G
Sbjct: 16 NLQNIVSTVNLDCKVDLQHVANSARNAEYNPRRFGAAIMRIREPKTTALIFATGKMVCTG 75
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E D +LA+RKFA+I+++LG P +++ FK+ NIV +CD++FP++L+ L ++Y
Sbjct: 76 AKSEADSRLAARKFARIVQKLGFPARFKDFKVQNIVGSCDLKFPIRLEGLALASGLSATY 135
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPE+FPGL+YRMV P+VV+L+FV+G+IV+TGAK + E+ AF+ I+P+L F+K
Sbjct: 136 EPEIFPGLVYRMVDPKVVILVFVSGKIVLTGAKVQEEICAAFEKIHPMLVQFRK 189
>gi|242247621|ref|NP_001156189.1| TATA-box-binding protein-like [Acyrthosiphon pisum]
gi|239791994|dbj|BAH72388.1| ACYPI005546 [Acyrthosiphon pisum]
Length = 331
Score = 192 bits (488), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 125/175 (71%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V ++GCPLDL +I SEYNP +F+GLIM++ P T L F SGK+++
Sbjct: 156 IQVQNIVCGANMGCPLDLVRIVMWTSNSEYNPLRFNGLIMRLRTPNVTSLLFPSGKMIMQ 215
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GAK + L RK AKIL++LGH +K+ + +HNIVCT DV FP+ L+ L+ HSQF+S
Sbjct: 216 GAKDDRTGNLGCRKVAKILERLGHNVKFSDYTVHNIVCTWDVGFPIMLEELNTAHSQFTS 275
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
+EPE+FP LIYRMVKPR V L+FVNG++V+TG K++S++ E+ + VL SFKK
Sbjct: 276 FEPEVFPALIYRMVKPRAVFLMFVNGKVVLTGLKTKSDIKESVFLMQDVLNSFKK 330
>gi|118789378|ref|XP_317373.3| AGAP008084-PA [Anopheles gambiae str. PEST]
gi|116123189|gb|EAA12691.4| AGAP008084-PA [Anopheles gambiae str. PEST]
Length = 200
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 86/144 (59%), Positives = 112/144 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N V T+SVGC L+L IN R R SEYNP +FHG++M+I +PR T L F+SGK++ GAK
Sbjct: 57 RNCVATVSVGCELNLKTINFRTRNSEYNPSRFHGVVMRIRDPRCTALVFRSGKVICTGAK 116
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+E L RKF +I+++LG +K+ FK+ N+V T D+RFP++L+ L+ VH QFSSYEP
Sbjct: 117 NEQQAHLGLRKFVRIIQKLGFDVKFLDFKVQNLVATADLRFPIRLENLNQVHGQFSSYEP 176
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGR 147
ELFPGLIYRMVKPRVVLLIFVNG+
Sbjct: 177 ELFPGLIYRMVKPRVVLLIFVNGK 200
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
+ N V T V + L ++ ++ S Y P F G++ R+ PR L+F +G+++ TG
Sbjct: 56 VRNCVATVSVGCELNLKTINF-RTRNSEYNPSRFHGVVMRIRDPRCTALVFRSGKVICTG 114
Query: 153 AKSRSELH 160
AK+ + H
Sbjct: 115 AKNEQQAH 122
>gi|323447675|gb|EGB03588.1| hypothetical protein AURANDRAFT_33824 [Aureococcus anophagefferens]
Length = 274
Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 122/173 (70%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ +DL + R +EYNP KF +IM++ PR T L F +GK++I GAK
Sbjct: 51 QNVVATVNLRISIDLRTLALNARNAEYNPKKFAAVIMRVREPRCTALVFSTGKMVITGAK 110
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E + +RKFA I++++G K+ FK+ N+V T D FP++L+AL + H++FSSYEP
Sbjct: 111 SEDAARRGARKFAAIIRKIGFQPKFGEFKVQNMVATSDAGFPIRLEALVYAHAKFSSYEP 170
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYR+V P+ VLL+FV+GR+V+TG KS L AF+ +YPVL FKK+
Sbjct: 171 ELFPGLIYRLVIPKTVLLLFVSGRMVLTGGKSLGHLRTAFEKMYPVLTEFKKE 223
>gi|414872051|tpg|DAA50608.1| TPA: hypothetical protein ZEAMMB73_869091, partial [Zea mays]
Length = 195
Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 85/151 (56%), Positives = 117/151 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSSYEP
Sbjct: 86 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAK 154
ELFPGLIYRM +P++VLLIFV+G+IV+TGAK
Sbjct: 146 ELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 176
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
+ NIV T ++ + L A+ + ++ + Y P+ F +I R+ +P+ LIF +G++V TG
Sbjct: 25 LQNIVSTVNLDCKLDLKAIA-LQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTG 83
Query: 153 AKSRSE 158
AKS +
Sbjct: 84 AKSEQQ 89
>gi|79313217|ref|NP_001030688.1| TATA-box-binding protein 1 [Arabidopsis thaliana]
gi|332641835|gb|AEE75356.1| TATA-box-binding protein 1 [Arabidopsis thaliana]
Length = 196
Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 87/160 (54%), Positives = 119/160 (74%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 26 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E K+A+RK+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H+ FSSYEP
Sbjct: 86 SEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEP 145
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAF 163
ELFPGLIYRM P++VLLIFV+G+IVITGAK S F
Sbjct: 146 ELFPGLIYRMKVPKIVLLIFVSGKIVITGAKVISHFSLGF 185
>gi|224009416|ref|XP_002293666.1| transcription factor IID, TATA box binding protein [Thalassiosira
pseudonana CCMP1335]
gi|220970338|gb|EED88675.1| transcription factor IID, TATA box binding protein [Thalassiosira
pseudonana CCMP1335]
Length = 167
Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 120/167 (71%), Gaps = 1/167 (0%)
Query: 9 TISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC 68
T +G LDL QI R R +E+NP +F +IM++ PR T L F SG+++I G K H+C
Sbjct: 1 TADLGVRLDLKQIALRCRNTEFNPRRFAAVIMRLREPRATALLFSSGRMVITGTKSSHNC 60
Query: 69 KLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFP 127
LA++KFA IL+++G P + FKI N+V T DV FP++L+ + + H FSSYEPELFP
Sbjct: 61 SLATKKFAYILERVGFQPAGFIDFKIQNVVGTVDVGFPIRLEGVVYAHPTFSSYEPELFP 120
Query: 128 GLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
GLIYR+V+PRVVLLIFV+G++VITGAK+ ++ EA +YPVL F+
Sbjct: 121 GLIYRLVQPRVVLLIFVSGKVVITGAKTEEQMVEALRKVYPVLVEFR 167
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VGT+ VG P+ L + + +S Y P F GLI +++ PR L F SGK++I GA
Sbjct: 87 QNVVGTVDVGFPIRLEGVVYAHPTFSSYEPELFPGLIYRLVQPRVVLLIFVSGKVVITGA 146
Query: 63 KHEHDCKLASRKFAKILKQL 82
K E A RK +L +
Sbjct: 147 KTEEQMVEALRKVYPVLVEF 166
>gi|403333508|gb|EJY65856.1| Tata box binding protein [Oxytricha trifallax]
Length = 500
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 124/168 (73%), Gaps = 1/168 (0%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T ++G LDL +I R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 313 QNIVSTANLGMKLDLRKIAMNCRNAEYNPKRFAAVIMRIRDPKTTALIFSSGKMVCTGAK 372
Query: 64 HEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E + A++K++K +K++G + Q FKI NIV +CDV FP+ L++L H +FS YE
Sbjct: 373 SEEFSRDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVGFPISLESLSSTHEKFSQYE 432
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVL 170
PE+FPGLIYRM P++VLLIF +G+IV+TGAK+++++ EA++NIYPVL
Sbjct: 433 PEIFPGLIYRMATPKIVLLIFASGKIVLTGAKNKNDIKEAYENIYPVL 480
>gi|308809792|ref|XP_003082205.1| transcription initiation factor tbp1-maize (ISS) [Ostreococcus
tauri]
gi|116060673|emb|CAL57151.1| transcription initiation factor tbp1-maize (ISS) [Ostreococcus
tauri]
Length = 258
Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 90/193 (46%), Positives = 126/193 (65%), Gaps = 21/193 (10%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPG---------------------KFHGLIMKI 42
+N+V T+++ C LDL I R EYNP +F IM+I
Sbjct: 50 RNIVATVNLDCKLDLKTIAFHARNVEYNPKVRRATRAPTLGEPTRRDENDFRFAAAIMRI 109
Query: 43 LNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDV 102
NP+TT L F SGK++ GAK E + A+RK+AK++ +LG P +++ FKI N+V +CDV
Sbjct: 110 RNPKTTALIFSSGKMVCTGAKTEALAREAARKYAKVIIKLGFPAQFKDFKIQNMVGSCDV 169
Query: 103 RFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
+FP++L+ L H F+ YEPELFPGLIYRM P++VLLIFV+G+IV+TG K R ++++A
Sbjct: 170 QFPIRLEGLAWQHGHFAQYEPELFPGLIYRMQMPKIVLLIFVSGKIVLTGGKRREDIYQA 229
Query: 163 FDNIYPVLKSFKK 175
F+NIYPVL FKK
Sbjct: 230 FENIYPVLTEFKK 242
>gi|378401306|emb|CBK13156.1| TATA binding protein, partial [Oreochromis mossambicus]
Length = 247
Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 82/149 (55%), Positives = 113/149 (75%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EY+P +F +IM+I PRTT L F SGK++ G
Sbjct: 99 QLQNIVSTVNLGCKLDLKTIALRARNAEYDPKRFAAVIMRIREPRTTALIFSSGKMVCTG 158
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E +LA+RK+A+++++LG P K+ FKI N+V CDV+FP++L+ L H QFSSY
Sbjct: 159 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGNCDVKFPIRLEGLVLTHQQFSSY 218
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
EPELFPGLIYRM+KPR+VLLIFV+G++V+
Sbjct: 219 EPELFPGLIYRMIKPRIVLLIFVSGKVVL 247
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 92 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
++ NIV T ++ + L + + ++ + Y+P+ F +I R+ +PR LIF +G++V T
Sbjct: 99 QLQNIVSTVNLGCKLDLKTIA-LRARNAEYDPKRFAAVIMRIREPRTTALIFSSGKMVCT 157
Query: 152 GAKSRSE 158
GAKS +
Sbjct: 158 GAKSEEQ 164
>gi|403354886|gb|EJY77003.1| Tata box binding protein [Oxytricha trifallax]
Length = 502
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/172 (48%), Positives = 120/172 (69%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T + GC LDL QI R EYNP +F IM+I P+TT L FQSGK++ GAK
Sbjct: 302 QNIVATCNFGCKLDLRQIALNARNCEYNPKRFAAAIMRIREPKTTALIFQSGKMVCTGAK 361
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E + A +++AK ++++G ++ + FKI N+V + D FP+ L+ L + H +FS+YEP
Sbjct: 362 DEEKSRTACKQYAKAVRKIGFNVQMKEFKIQNVVASHDCGFPISLEGLSNEHDKFSTYEP 421
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM P++V+LIF +G+IV TGAK+R ++ +A+ NI PVL+ KK
Sbjct: 422 ELFPGLIYRMASPKLVMLIFASGKIVFTGAKTREQIRDAYRNIDPVLRKHKK 473
>gi|331686248|gb|AED87004.1| tata box binding protein [Sterkiella histriomuscorum]
Length = 302
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 124/168 (73%), Gaps = 1/168 (0%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T ++G LDL +I R +EYNP +F +IM+I +P+TT L F SGK++ GAK
Sbjct: 115 QNIVSTANLGMKLDLRKIAMNCRNAEYNPKRFAAVIMRIRDPKTTALIFSSGKMVCTGAK 174
Query: 64 HEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E + A++K++K +K++G + Q FKI NIV +CDV FP+ L++L H +FS YE
Sbjct: 175 SEEFSRDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVGFPISLESLSSTHEKFSQYE 234
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVL 170
PE+FPGLIYRM P++VLLIF +G+IV+TGAK+++++ EA++NIYPVL
Sbjct: 235 PEIFPGLIYRMATPKIVLLIFASGKIVLTGAKNKNDIKEAYENIYPVL 282
>gi|328705141|ref|XP_001943046.2| PREDICTED: TATA box-binding protein-like protein 2-like
[Acyrthosiphon pisum]
Length = 343
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/175 (49%), Positives = 125/175 (71%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V ++GCPLDL +I SEYNP +F+GLIM++ P T L F SGK+++
Sbjct: 168 IQVQNIVCGANMGCPLDLVRIVMWTSNSEYNPQRFNGLIMRLRTPNVTSLLFPSGKMIMQ 227
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GAK + L RK AKIL++LGH +++ + +HNIVCT DV FP+ L+ L+ HSQF+S
Sbjct: 228 GAKDDRTGNLGCRKVAKILERLGHNVQFCDYTVHNIVCTWDVGFPIMLEELNTAHSQFTS 287
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
+EPE+FP LIYRMVKPR V L+FVNG++V+TG K+++++ E+ + VL +F+K
Sbjct: 288 FEPEVFPALIYRMVKPRAVFLMFVNGKVVLTGLKTKADIKESVFLMQDVLNNFRK 342
>gi|331686252|gb|AED87006.1| tata box binding protein [Sterkiella histriomuscorum]
Length = 299
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 123/168 (73%), Gaps = 1/168 (0%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T ++G LDL +I R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 112 QNIVSTANLGMKLDLRKIALNCRNAEYNPRRFAAVIMRIREPKTTALIFSSGKMVRTGAK 171
Query: 64 HEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E + A++K++K +K++G + Q FKI NIV +CDV FP+ L++L H +FS YE
Sbjct: 172 SEEFSRDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVGFPISLESLSSAHDKFSQYE 231
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVL 170
PE+FPGLIYRM P++VLLIF +G+IV+TGAK+++++ EA++NIYPVL
Sbjct: 232 PEIFPGLIYRMATPKIVLLIFASGKIVLTGAKNKNDIKEAYENIYPVL 279
>gi|331686254|gb|AED87007.1| tata box binding protein [Sterkiella nova]
Length = 301
Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 123/168 (73%), Gaps = 1/168 (0%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T ++G L L +I R +EYNP +F +IM+I P+TT L F+SGK++ GAK
Sbjct: 114 QNIVSTANLGVELKLREIAMNCRNAEYNPRRFAAVIMRIREPKTTALIFRSGKMVCTGAK 173
Query: 64 HEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E + A++K++K +K++G + Q FKI NIV +CDV FP+ L++L H +FS YE
Sbjct: 174 SEELSRDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVGFPISLESLSSAHDKFSQYE 233
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVL 170
PE+FPGLIYRM P++VLLIF +G+IV+TGAK+++++ EA++NIYPVL
Sbjct: 234 PEIFPGLIYRMATPKIVLLIFASGKIVLTGAKNKNDIKEAYENIYPVL 281
>gi|424513557|emb|CCO66179.1| predicted protein [Bathycoccus prasinos]
Length = 289
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 126/205 (61%), Gaps = 33/205 (16%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPG------------------------------ 33
QN+V T+++ C LDL I R EYNP
Sbjct: 51 QNIVATVNLDCKLDLKTIAFHARNVEYNPKVCRAVGGKEIVKTDAFLHHSFHQTFRCALL 110
Query: 34 ---KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQG 90
+F IM+I NP+TT L F SGK++ GAK E + A+RK+AK++ +LG P +++
Sbjct: 111 NKQRFAAAIMRIRNPKTTALIFASGKMVCTGAKTEALAREAARKYAKVIIKLGFPAQFKD 170
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
FKI N+V +CDV+FP++L+ L H F+ YEPELFPGLIYRM P++VLLIFV+G+IV+
Sbjct: 171 FKIQNMVGSCDVKFPIRLEGLAWSHGHFAQYEPELFPGLIYRMQMPKIVLLIFVSGKIVL 230
Query: 151 TGAKSRSELHEAFDNIYPVLKSFKK 175
TG K R ++++AF+NIYPVL FKK
Sbjct: 231 TGGKRREDIYQAFENIYPVLTEFKK 255
>gi|37727185|gb|AAO34523.1| TATA-binding protein isoform 4 [Branchiostoma floridae]
Length = 136
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/134 (60%), Positives = 110/134 (82%)
Query: 42 ILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCD 101
I +PRTT L F SGK++ GAK E +LA+RK+A+++++LG P K+ FKI N+V +CD
Sbjct: 1 IRDPRTTALIFSSGKMVCTGAKSEDQSRLAARKYARVVQKLGFPCKFLDFKIQNMVGSCD 60
Query: 102 VRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHE 161
V+FP++L+ L H+QFSSYEPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK R E++E
Sbjct: 61 VKFPIRLEGLVLTHAQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVREEIYE 120
Query: 162 AFDNIYPVLKSFKK 175
AF+ IYP+LK F+K
Sbjct: 121 AFETIYPILKGFRK 134
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QNMVG+ V P+ L + + ++S Y P F GLI +++ PR L F SGK+++ GA
Sbjct: 53 QNMVGSCDVKFPIRLEGLVLTHAQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGA 112
Query: 63 KHEHDCKLASRKFAKILK 80
K + A ILK
Sbjct: 113 KVREEIYEAFETIYPILK 130
>gi|395330269|gb|EJF62653.1| TBP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 137
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 110/136 (80%)
Query: 40 MKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCT 99
M+I +P+TT L F SGK+++ GAK E D +LASRK+A+I+++LG K+ FKI NIV +
Sbjct: 1 MRIRDPKTTALIFASGKMVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGS 60
Query: 100 CDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSEL 159
CDV+FP++L+ L + H QFSSYEPELFPGLIYRM+KP+VVLLIFV+G+IV+TGAK R E+
Sbjct: 61 CDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGAKVREEI 120
Query: 160 HEAFDNIYPVLKSFKK 175
+ AF+ IY VL F+K
Sbjct: 121 YTAFNTIYTVLVEFRK 136
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S ++S Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 55 QNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLTGA 114
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K + A +L + P
Sbjct: 115 KVREEIYTAFNTIYTVLVEFRKP 137
>gi|219113475|ref|XP_002186321.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583171|gb|ACI65791.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 203
Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 121/176 (68%), Gaps = 1/176 (0%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNM T+++G LDL +I + R +E+NP +F +IM++ PR T L F SGK+ +
Sbjct: 2 IRIQNMSSTVNLGTRLDLKKIALKCRNTEFNPRRFGAVIMRLREPRATALIFSSGKMCVT 61
Query: 61 GAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
G K H+ LA++KFA I++++G P + FK+ NIV T DV FP++L+ L + HS F+
Sbjct: 62 GVKSTHNANLAAKKFAYIVERVGFKPKENIDFKVQNIVGTADVGFPIRLEGLVYAHSAFA 121
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
SYEPELFPGLIYR V PRVV LIFV+G+IVITGAK +L A ++PVL FKK
Sbjct: 122 SYEPELFPGLIYRFVNPRVVFLIFVSGKIVITGAKKEMDLAHALTKLFPVLMEFKK 177
>gi|414864598|tpg|DAA43155.1| TPA: hypothetical protein ZEAMMB73_034825 [Zea mays]
Length = 212
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 129/194 (66%), Gaps = 21/194 (10%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPG---------------------KFHGLIMKI 42
QN+V T+++ C +DL + + R +EYNP +F IM+I
Sbjct: 18 QNIVSTVNLECKVDLQHVANSARNAEYNPRVCIIISAAAALFFFFFAWNYIRFAAAIMRI 77
Query: 43 LNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDV 102
P+TT L F SGK++ GAK E D +LA+RKFA+I+++LG P +++ FK+ NIV +CD+
Sbjct: 78 REPKTTTLIFASGKMVCTGAKSEADSRLAARKFARIVQKLGSPARFKDFKVQNIVGSCDL 137
Query: 103 RFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
+FP++L+ L ++YEPE+FPGL+YRMV P+VV+L+FV+G+IV+TGAK R E+ A
Sbjct: 138 KFPIRLEGLALASGLSATYEPEIFPGLVYRMVDPKVVILVFVSGKIVLTGAKVREEICAA 197
Query: 163 FDNIYPVLKSFKKQ 176
F+ I+P+L F+K+
Sbjct: 198 FEKIHPMLVQFRKR 211
>gi|326497179|dbj|BAK02174.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 137
Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 81/136 (59%), Positives = 110/136 (80%)
Query: 40 MKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCT 99
M+I P+TT L F SGK+++ GAK E D KLASRK+A+I+++LG K+ FKI NIV +
Sbjct: 1 MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGS 60
Query: 100 CDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSEL 159
CD++FP++L+ L H FSSYEPELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+
Sbjct: 61 CDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEI 120
Query: 160 HEAFDNIYPVLKSFKK 175
++AF+ IYPVL+ F+K
Sbjct: 121 YQAFEMIYPVLQDFRK 136
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRV-RYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ + P+ L + SR +S Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 55 QNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGA 114
Query: 63 KHEHD 67
K +
Sbjct: 115 KVREE 119
>gi|331686256|gb|AED87008.1| tata box binding protein [Nyctotherus ovalis]
Length = 195
Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 79/171 (46%), Positives = 123/171 (71%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+++ C LDL +I + + +EYNP +F +IM+I NP+TT L F SGK++ GAK
Sbjct: 18 ENIVSTVNLACELDLRKITLQAKNAEYNPKRFAAVIMRIRNPKTTALIFSSGKIVCTGAK 77
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D + A+ K+AK +K+LG +K++ F I N+V +C V F + LD L +++FS+Y+P
Sbjct: 78 SETDSRTAAMKYAKTIKKLGFNVKFKEFTIQNMVASCGVEFGINLDELLLSYNRFSTYDP 137
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
E+FPGLI+RM P++V LIF +G+I++TGAK R ++ +A+ IYP+L FK
Sbjct: 138 EIFPGLIFRMEDPKIVFLIFSSGKIILTGAKQRDQIFKAYHKIYPMLTIFK 188
>gi|413933536|gb|AFW68087.1| TATA-binding protein2 [Zea mays]
Length = 139
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 81/136 (59%), Positives = 108/136 (79%)
Query: 40 MKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCT 99
M+I P+TT L F SGK++ GAK E KLA+RK+A+I+++LG P K++ FKI NIV +
Sbjct: 1 MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGS 60
Query: 100 CDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSEL 159
CDV+FP++L+ L + H FSSYEPELFPGLIYRM +P++VLLIFV+G+IV+TGAK R E
Sbjct: 61 CDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREET 120
Query: 160 HEAFDNIYPVLKSFKK 175
+ AF+NIYPVL F+K
Sbjct: 121 YTAFENIYPVLSEFRK 136
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S +S Y P F GLI ++ P+ L F SGK+++ GA
Sbjct: 55 QNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGA 114
Query: 63 KHEHDCKLASRKFAKILKQL 82
K + A +L +
Sbjct: 115 KVREETYTAFENIYPVLSEF 134
>gi|452819885|gb|EME26936.1| transcription initiation factor TFIID TATA-box-binding protein
[Galdieria sulphuraria]
Length = 206
Score = 182 bits (461), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 125/173 (72%), Gaps = 2/173 (1%)
Query: 5 NMVGTISVGCP-LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
N+V T+++G LDL I + R +EYNP +F +IM++ P+TT L F SGK+++ GAK
Sbjct: 32 NLVCTVNLGVRNLDLKTIAIKARNAEYNPKRFQAVIMRVREPKTTALIFSSGKIVVTGAK 91
Query: 64 HEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E + K A++KF I+++ G+ K+ FK+ N+V T V FP++L+AL H+QF +YE
Sbjct: 92 SEEESKRAAKKFVVIVRKCGYEEAKFSEFKVQNVVGTSAVDFPIRLEALAQAHTQFCTYE 151
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
PELFPGL+YRM++P++VLLIFV+G++V+TG K+R ++ EA + I VL +FKK
Sbjct: 152 PELFPGLVYRMMEPKIVLLIFVSGKLVLTGGKTRKQIDEALEKIKNVLVTFKK 204
>gi|119187015|ref|XP_001244114.1| hypothetical protein CIMG_03555 [Coccidioides immitis RS]
Length = 137
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 81/136 (59%), Positives = 109/136 (80%)
Query: 40 MKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCT 99
M+I P+TT L F SGK+++ GAK E D KLASRK+A+I+++LG K+ FKI NIV +
Sbjct: 1 MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGS 60
Query: 100 CDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSEL 159
CD++FP++L+ L H FSSYEPELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+
Sbjct: 61 CDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEI 120
Query: 160 HEAFDNIYPVLKSFKK 175
++AF+ IYPVL F+K
Sbjct: 121 YQAFEMIYPVLTDFRK 136
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRV-RYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ + P+ L + SR +S Y P F GLI +++ P+ L F SGK+++ GA
Sbjct: 55 QNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGA 114
Query: 63 KHEHD 67
K +
Sbjct: 115 KVREE 119
>gi|63145982|gb|AAY33926.1| TATA box binding protein [Ovis aries]
Length = 141
Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/141 (56%), Positives = 108/141 (76%)
Query: 8 GTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHD 67
T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ GAK E
Sbjct: 1 STVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQ 60
Query: 68 CKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFP 127
+LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYEPELFP
Sbjct: 61 SRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFP 120
Query: 128 GLIYRMVKPRVVLLIFVNGRI 148
GLIYRM+KPR+VLLIFV+G++
Sbjct: 121 GLIYRMIKPRIVLLIFVSGKV 141
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Query: 95 NIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAK 154
N+ C D+ K AL +++ Y P+ F +I R+ +PR LIF +G++V TGAK
Sbjct: 4 NLGCKLDL----KTIALRARNAE---YNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 56
Query: 155 SRSE 158
S +
Sbjct: 57 SEEQ 60
>gi|403278005|ref|XP_003930626.1| PREDICTED: TATA box-binding protein-like protein 2 [Saimiri
boliviensis boliviensis]
Length = 381
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/177 (49%), Positives = 122/177 (68%), Gaps = 3/177 (1%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNP---GKFHGLIMKILNPRTTCLAFQSGKLL 58
QN+V T+++ C LDL +I + +EYNP G+ + P C+
Sbjct: 204 QLQNIVSTVNLACKLDLKKIALHAKNAEYNPKLCGEPWHIFSYDYQPNLPCVKPLRSFTS 263
Query: 59 ILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 118
A E +LA+RK+A+++++LG P ++ FKI N+V +CDV+FP++L+ L H QF
Sbjct: 264 PGSANCEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQF 323
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
SSYEPELFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE+ EAF+NIYP+LKSFKK
Sbjct: 324 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEICEAFENIYPILKSFKK 380
>gi|341886263|gb|EGT42198.1| hypothetical protein CAEBREN_08601 [Caenorhabditis brenneri]
Length = 210
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 121/168 (72%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V TIS+G PLDL +I R EYNP +F IM+I NPRTT L F SGK++ GAK
Sbjct: 41 ENVVSTISLGVPLDLEKIALNGRNIEYNPSRFGAAIMRIRNPRTTGLIFSSGKIVCAGAK 100
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E C+ ASRK+A+I+++LG+ K F+I NIV TC+VRF + L + H +F ++EP
Sbjct: 101 SEESCRRASRKYARIVEKLGYQAKSVVFEIQNIVATCNVRFSINLGGISFTHLKFCTFEP 160
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLK 171
E+FPGL YRM++P+V ++IF +G++ ITGAK++ ++ AF +IYP+L+
Sbjct: 161 EIFPGLHYRMLQPKVTIVIFPSGKLNITGAKNKEDIDTAFRHIYPILR 208
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+V T +V ++L I+ + +++ + P F GL ++L P+ T + F SGKL I GA
Sbjct: 131 QNIVATCNVRFSINLGGISFTHLKFCTFEPEIFPGLHYRMLQPKVTIVIFPSGKLNITGA 190
Query: 63 KHEHDCKLASRKFAKILKQ 81
K++ D A R IL++
Sbjct: 191 KNKEDIDTAFRHIYPILRK 209
>gi|67479107|ref|XP_654935.1| TATA binding protein [Entamoeba histolytica HM-1:IMSS]
gi|296439771|sp|A7UFC2.1|TBPL1_ENTHI RecName: Full=TATA-box-binding protein-like protein 1; Short=EhTRF1
gi|56472030|gb|EAL49549.1| TATA binding protein, putative [Entamoeba histolytica HM-1:IMSS]
gi|155007635|gb|ABS89251.1| TBP-related factor [Entamoeba histolytica]
gi|407041324|gb|EKE40663.1| transcription initiation factor TFIID family protein [Entamoeba
nuttalli P19]
gi|449703269|gb|EMD43751.1| TBPrelated factor, putative [Entamoeba histolytica KU27]
Length = 216
Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 118/167 (70%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+ + C ++L + RVR +EYNP +F LI++I NP+TT L F SGKL++ G K
Sbjct: 42 QNIVATVELDCTINLQDVVRRVRNAEYNPKRFGALIIRITNPKTTALVFHSGKLVVTGGK 101
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
D +LA RK+A+IL++LG+ +K+ FKI N+V +CD++F + L L + + + YEP
Sbjct: 102 TVDDSRLAGRKYARILQRLGYNVKFNHFKIQNVVASCDMKFAISLKELIQLAPKITKYEP 161
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVL 170
E+FPG++YR+ P++VLLIF +G+IV TG K ++++AF IY +L
Sbjct: 162 EIFPGVVYRLADPKMVLLIFASGKIVFTGGKEIEQINKAFSEIYKIL 208
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+V + + + L + I + ++Y P F G++ ++ +P+ L F SGK++ G
Sbjct: 132 QNVVASCDMKFAISLKELIQLAPKITKYEPEIFPGVVYRLADPKMVLLIFASGKIVFTGG 191
Query: 63 KHEHDCKLASRKFAKILKQLGH 84
K A + KIL Q+ +
Sbjct: 192 KEIEQINKAFSEIYKILLQVAN 213
>gi|167386161|ref|XP_001737643.1| TATA-box-binding protein [Entamoeba dispar SAW760]
gi|165899478|gb|EDR26064.1| TATA-box-binding protein, putative [Entamoeba dispar SAW760]
Length = 216
Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 118/167 (70%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+ + C ++L + RVR +EYNP +F LI++I NP+TT L F SGKL++ G K
Sbjct: 42 QNIVATVELDCTINLQDVVRRVRNAEYNPKRFGALIIRITNPKTTALVFHSGKLVVTGGK 101
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
D +LA RK+A+IL++LG+ +K+ FKI N+V +CD++F + L L + + + YEP
Sbjct: 102 TVDDSRLAGRKYARILQRLGYNVKFNHFKIQNVVASCDMKFAISLKELIQLAPKITKYEP 161
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVL 170
E+FPG++YR+ P++VLLIF +G+IV TG K ++++AF IY +L
Sbjct: 162 EIFPGVVYRLADPKMVLLIFASGKIVFTGGKEIEQINKAFSEIYKIL 208
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+V + + + L + I + ++Y P F G++ ++ +P+ L F SGK++ G
Sbjct: 132 QNVVASCDMKFAISLKELIQLAPKITKYEPEIFPGVVYRLADPKMVLLIFASGKIVFTGG 191
Query: 63 KHEHDCKLASRKFAKILKQLGH 84
K A + KIL Q+ +
Sbjct: 192 KEIEQINKAFSEIYKILLQVAN 213
>gi|440295403|gb|ELP88316.1| TATA-box-binding protein, putative [Entamoeba invadens IP1]
Length = 236
Score = 178 bits (452), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 119/167 (71%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+ + C ++L + RVR +EYNP +F LI++I NP+TT L F SGKL+I G K
Sbjct: 62 QNIVATVELDCNVNLQDVVRRVRNAEYNPKRFGALIIRITNPKTTALVFHSGKLVITGGK 121
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
D +LA RK+A+IL++LG+ +K+ FK+ N+V +CD++F + L L + + + YEP
Sbjct: 122 TIDDSRLAGRKYARILQRLGYEVKFNHFKVQNVVASCDMKFAISLRDLITLSPKNTKYEP 181
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVL 170
E+FPG++YR+ +P++VLLIF +G+IV TG K ++++AF IY +L
Sbjct: 182 EIFPGVVYRLAEPKMVLLIFASGKIVFTGGKEVEQINQAFKTIYKIL 228
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+V + + + L I + ++Y P F G++ ++ P+ L F SGK++ G
Sbjct: 152 QNVVASCDMKFAISLRDLITLSPKNTKYEPEIFPGVVYRLAEPKMVLLIFASGKIVFTGG 211
Query: 63 KHEHDCKLASRKFAKILKQLG 83
K A + KIL Q+
Sbjct: 212 KEVEQINQAFKTIYKILLQVA 232
>gi|331213275|ref|XP_003319319.1| TATA-box-binding protein [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309298309|gb|EFP74900.1| TATA-box-binding protein [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 209
Score = 178 bits (451), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 110/146 (75%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 64 QNIVATVNLECRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 123
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LA+RK+A+I+++LG K+ FKI NIV +CDVRFP++L+ L + H FSSYEP
Sbjct: 124 SEDDSRLAARKYARIVQKLGFEAKFTEFKIQNIVGSCDVRFPIRLEGLAYNHGHFSSYEP 183
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIV 149
ELFPGLIYRM K +VVLLIFV+G+IV
Sbjct: 184 ELFPGLIYRMNKQKVVLLIFVSGKIV 209
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
+ NIV T ++ + L + +H++ + Y P+ F +I R+ +P+ LIF +G++V+TG
Sbjct: 63 LQNIVATVNLECRLDLKTIA-LHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTG 121
Query: 153 AKSRSE 158
AKS +
Sbjct: 122 AKSEDD 127
>gi|325182645|emb|CCA17100.1| TATAboxbinding protein putative [Albugo laibachii Nc14]
Length = 270
Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 122/171 (71%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+VGTI + L+L I R +EYNP +F ++M++ +P+TT L F SGK++I GA+
Sbjct: 78 NVVGTIDLKTRLELKTIALHARNAEYNPKRFCAVVMRLRDPKTTALIFSSGKIVITGARS 137
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
E C+LA RKF +++++L P +++ F+I NI+ T DV F ++L+ + + H++F SYEPE
Sbjct: 138 EEFCRLAGRKFTRVIQKLHFPARFENFRIQNIMGTSDVHFSIRLEGILNDHARFCSYEPE 197
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
LFPGLIYR+ +P++ +LIFV+G+IV GAK S L +A + +YPVL ++K
Sbjct: 198 LFPGLIYRLTEPKLTMLIFVSGKIVFCGAKDSSHLDQAIEKMYPVLLEYRK 248
>gi|432937597|ref|XP_004082456.1| PREDICTED: LOW QUALITY PROTEIN: TATA box-binding protein-like
protein 2-like [Oryzias latipes]
Length = 354
Score = 172 bits (435), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 122/177 (68%), Gaps = 2/177 (1%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GCPLDL I + R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 178 QLQNIVSTVTLGCPLDLKFIARQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 237
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
AK E + +LA+RK+A+++++LG ++ FKI N+V +CDV FP++L+ L H QFS Y
Sbjct: 238 AKSEEESRLAARKYARVVQKLGFSARFLEFKIQNMVASCDVCFPIRLEGLVLTHQQFSRY 297
Query: 122 EPELFPGLIYRMVK-PRVVLLIFVNG-RIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
+ P + P+++L F++ +V+TGAK R+E++EAF+NIYP+LK F+KQ
Sbjct: 298 QSHQHPTNSWTSCXFPKMLLCFFLDHISVVLTGAKERAEIYEAFENIYPILKGFRKQ 354
>gi|258563652|ref|XP_002582571.1| TATA-box binding protein [Uncinocarpus reesii 1704]
gi|237908078|gb|EEP82479.1| TATA-box binding protein [Uncinocarpus reesii 1704]
Length = 251
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 113/167 (67%), Gaps = 17/167 (10%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+++ C LDL I R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 90 RNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 149
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ G K+ FKI NIV +CD++F ++L+ L H FSSYEP
Sbjct: 150 NS-----------------GFNAKFTDFKIQNIVGSCDIKFSIRLEGLASRHHNFSSYEP 192
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVL 170
ELFPGLIYRM+KP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL
Sbjct: 193 ELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVL 239
>gi|116195450|ref|XP_001223537.1| hypothetical protein CHGG_04323 [Chaetomium globosum CBS 148.51]
gi|88180236|gb|EAQ87704.1| hypothetical protein CHGG_04323 [Chaetomium globosum CBS 148.51]
Length = 242
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 116/169 (68%), Gaps = 4/169 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+ +GC LDL I+ + R EYN KFH LIM+I PRTT L F SGK++I GAK
Sbjct: 38 QNVVATVDLGCRLDLRLISEQARNVEYNRRKFHALIMRIREPRTTTLVFSSGKMVITGAK 97
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIV--CTCDVRFPVKLDALHHVHSQFSSY 121
E KLA+RK A+ L++ G + FK+ N V TCD F ++L+ + H++ + + Y
Sbjct: 98 SEALAKLAARKHARALQKCGFGTGFSDFKVQNYVGSATCD--FLIRLERIAHMYRESAMY 155
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVL 170
EPELFPGL+Y M++P++ L+F G+IV+TGAK+ ++ EAF N+YP+L
Sbjct: 156 EPELFPGLVYTMLRPKLKCLVFSTGKIVLTGAKAVEDIQEAFANLYPLL 204
>gi|209877002|ref|XP_002139943.1| TATA-box-binding protein [Cryptosporidium muris RN66]
gi|209555549|gb|EEA05594.1| TATA-box-binding protein, putative [Cryptosporidium muris RN66]
Length = 211
Score = 168 bits (425), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 121/177 (68%), Gaps = 5/177 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN++ ++ + C LDL I R +EYNP K + ++M++ PR T L F+SG+++I GA+
Sbjct: 35 QNIIASVHLQCELDLRSIAISARNAEYNPKKVNAVVMRLREPRCTGLLFRSGRMMITGAR 94
Query: 64 HEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
+E+D + +K AKI ++ GHP +K+ F++ N++ T D +FP++L+ L + H +F +YE
Sbjct: 95 NENDARYGGKKMAKICQKSGHPRVKFSNFRMENMIATADCKFPIRLEGLAYDHREFCNYE 154
Query: 123 PELFPGLIYRM----VKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
PELFPGL+YR + V+L+FV+G++++TG +S E+ FDNIYPVL ++K
Sbjct: 155 PELFPGLVYRYHPENSPTKAVILLFVSGKVIVTGCRSYKEICSVFDNIYPVLCQYRK 211
>gi|66359858|ref|XP_627107.1| TATA-box factor binding protein [Cryptosporidium parvum Iowa II]
gi|38491418|gb|AAR21861.1| TATA-binding protein [Cryptosporidium parvum]
gi|46228532|gb|EAK89402.1| TATA-box factor binding protein [Cryptosporidium parvum Iowa II]
gi|323509817|dbj|BAJ77801.1| cgd8_2030 [Cryptosporidium parvum]
Length = 249
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 120/177 (67%), Gaps = 5/177 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN++ ++ + C LDL I R +EYNP K + ++M++ +P+ T L F+SG+L+I GA+
Sbjct: 73 QNIIASVHLQCELDLRMIAISARNAEYNPKKVNAVVMRLRDPKCTGLLFRSGRLMITGAR 132
Query: 64 HEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E+D KL +K AKI ++ G P +K+ FK+ NI+ T D +FP++L+ L + H F +YE
Sbjct: 133 LENDAKLGGKKMAKICQKSGFPKVKFTNFKMENIIATADCKFPIRLEGLAYDHRDFCNYE 192
Query: 123 PELFPGLIYRM----VKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
PELFPGL+YR + VLL+FV+G++++TG K+ E+ FDNIYPVL ++K
Sbjct: 193 PELFPGLVYRYHPDNSPTKAVLLLFVSGKVIVTGCKNYQEICNVFDNIYPVLCQYRK 249
>gi|67611070|ref|XP_667132.1| TATA-binding protein [Cryptosporidium hominis TU502]
gi|54658235|gb|EAL36903.1| TATA-binding protein [Cryptosporidium hominis]
Length = 249
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 120/177 (67%), Gaps = 5/177 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN++ ++ + C LDL I R +EYNP K + ++M++ +P+ T L F+SG+L+I GA+
Sbjct: 73 QNIIASVHLQCELDLRMIAISARNAEYNPKKVNAVVMRLRDPKCTGLLFRSGRLMITGAR 132
Query: 64 HEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E+D KL +K AKI ++ G P +K+ FK+ NI+ T D +FP++L+ L + H F +YE
Sbjct: 133 LENDAKLGGKKMAKICQKSGFPKVKFTNFKMENIIATADCKFPIRLEGLAYDHRDFCNYE 192
Query: 123 PELFPGLIYRM----VKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
PELFPGL+YR + VLL+FV+G++++TG K+ E+ FDNIYPVL ++K
Sbjct: 193 PELFPGLVYRYHPDNSPTKAVLLLFVSGKVIVTGCKNYQEICNVFDNIYPVLCQYRK 249
>gi|410989830|ref|XP_004001158.1| PREDICTED: TATA box-binding protein-like protein 2-like [Felis
catus]
Length = 135
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 71/111 (63%), Positives = 95/111 (85%)
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
E +LA+RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSYEPE
Sbjct: 24 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 83
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
LFPGLIYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK FKK
Sbjct: 84 LFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 134
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QNMVG+ V P+ L + + ++S Y P F GLI +++ PR L F SGK+++ GA
Sbjct: 53 QNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGA 112
Query: 63 KHEHDCKLASRKFAKILK 80
K + A ILK
Sbjct: 113 KERSEIYEAFENIYPILK 130
>gi|444728636|gb|ELW69085.1| TATA-box-binding protein [Tupaia chinensis]
Length = 313
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 69/112 (61%), Positives = 96/112 (85%)
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
HE +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QFSSYEP
Sbjct: 200 HEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEP 259
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 260 ELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 311
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QNMVG+ V P+ L + + ++S Y P F GLI +++ PR L F SGK+++ GA
Sbjct: 230 QNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGA 289
Query: 63 KHEHDCKLASRKFAKILK 80
K + A ILK
Sbjct: 290 KVRAEIYEAFENIYPILK 307
>gi|167387403|ref|XP_001738146.1| TATA-box-binding protein [Entamoeba dispar SAW760]
gi|165898721|gb|EDR25505.1| TATA-box-binding protein [Entamoeba dispar SAW760]
Length = 212
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 120/172 (69%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V T +G L+L +I + R +EYNP +F G IM+I +P++T L FQ+GK++ G +
Sbjct: 36 NVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCTGTRS 95
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
+ K+AS+K+AKI+K++G+PI Y F + NIV +CDV+F + L AL + F YEPE
Sbjct: 96 IEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRALVDSYLAFCQYEPE 155
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
+FPGL+YRM P+V LL+F G++V+TGAK L+ A+ NIYP+L + +K+
Sbjct: 156 VFPGLVYRMASPKVTLLVFSTGKVVLTGAKDEESLNLAYKNIYPILLANRKE 207
>gi|167387263|ref|XP_001738088.1| TATA-box-binding protein [Entamoeba dispar SAW760]
gi|165898834|gb|EDR25598.1| TATA-box-binding protein, putative [Entamoeba dispar SAW760]
Length = 234
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 120/172 (69%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V T +G L+L +I + R +EYNP +F G IM+I +P++T L FQ+GK++ G +
Sbjct: 58 NVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCTGTRS 117
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
+ K+AS+K+AKI+K++G+PI Y F + NIV +CDV+F + L AL + F YEPE
Sbjct: 118 IEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRALVDSYLAFCQYEPE 177
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
+FPGL+YRM P+V LL+F G++V+TGAK L+ A+ NIYP+L + +K+
Sbjct: 178 VFPGLVYRMASPKVTLLVFSTGKVVLTGAKDEESLNLAYKNIYPILLANRKE 229
>gi|407813853|gb|AFU35092.1| TATA box binding protein, partial [Tetranychus urticae]
Length = 122
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 73/122 (59%), Positives = 97/122 (79%)
Query: 32 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGF 91
P +F +IM+I PRTT L F SGK++ GAK E +LA+RK+A+I+++LG K+ F
Sbjct: 1 PKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARIVQKLGFDAKFLDF 60
Query: 92 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
KI N+V +CDV+FP++L+ L HSQFSSYEPELFPGLIYRMVKPR+VLLIFV+G++V+T
Sbjct: 61 KIQNMVGSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 120
Query: 152 GA 153
GA
Sbjct: 121 GA 122
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QNMVG+ V P+ L + + ++S Y P F GLI +++ PR L F SGK+++ GA
Sbjct: 63 QNMVGSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGA 122
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSE 158
P+ F +I R+ +PR LIF +G++V TGAKS +
Sbjct: 1 PKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQ 36
>gi|67473541|ref|XP_652533.1| transcription initiation factor TFIID [Entamoeba histolytica
HM-1:IMSS]
gi|296439770|sp|C4M7H7.1|TBP2_ENTHI RecName: Full=TATA-box-binding protein 2; Short=EhTBP2; AltName:
Full=TATA sequence-binding protein; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|56469391|gb|EAL47145.1| transcription initiation factor TFIID, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 212
Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 119/172 (69%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V T +G L+L +I + R +EYNP +F G IM+I +P++T L FQ+GK++ G +
Sbjct: 36 NVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCTGTRS 95
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
+ K+AS+K+AKI+K++G+PI Y F + NIV +CDV+F + L L + F YEPE
Sbjct: 96 IEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRTLVDSYLAFCQYEPE 155
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
+FPGL+YRM P+V LL+F G++V+TGAK L+ A+ NIYP+L + +K+
Sbjct: 156 VFPGLVYRMASPKVTLLVFSTGKVVLTGAKDEESLNLAYKNIYPILLANRKE 207
>gi|222433591|gb|ACM51140.1| TATA box binding protein [Tetranychus cinnabarinus]
Length = 122
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 73/122 (59%), Positives = 96/122 (78%)
Query: 32 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGF 91
P F +IM+I PRTT L F SGK++ GAK E +LA+RK+A+I+++LG K+ F
Sbjct: 1 PKSFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARIVQKLGFDAKFLDF 60
Query: 92 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
KI N+V +CDV+FP++L+ L HSQFSSYEPELFPGLIYRMVKPR+VLLIFV+G++V+T
Sbjct: 61 KIQNMVGSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 120
Query: 152 GA 153
GA
Sbjct: 121 GA 122
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QNMVG+ V P+ L + + ++S Y P F GLI +++ PR L F SGK+++ GA
Sbjct: 63 QNMVGSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGA 122
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSE 158
P+ F +I R+ +PR LIF +G++V TGAKS +
Sbjct: 1 PKSFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQ 36
>gi|183235483|ref|XP_001914239.1| transcription initiation factor TFIID [Entamoeba histolytica
HM-1:IMSS]
gi|3915894|sp|P52653.2|TBP1_ENTHI RecName: Full=TATA-box-binding protein 1; Short=EhTBP; AltName:
Full=TATA sequence-binding protein; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|3201503|emb|CAA88304.1| TATA box-binding protein [Entamoeba histolytica]
gi|169800528|gb|EDS88986.1| transcription initiation factor TFIID, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449703333|gb|EMD43805.1| transcription initiation factor tfiid, putative [Entamoeba
histolytica KU27]
Length = 234
Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 119/172 (69%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V T +G L+L +I + R +EYNP +F G IM+I +P++T L FQ+GK++ G +
Sbjct: 58 NVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCTGTRS 117
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
+ K+AS+K+AKI+K++G+PI Y F + NIV +CDV+F + L L + F YEPE
Sbjct: 118 IEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRTLVDSYLAFCQYEPE 177
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
+FPGL+YRM P+V LL+F G++V+TGAK L+ A+ NIYP+L + +K+
Sbjct: 178 VFPGLVYRMASPKVTLLVFSTGKVVLTGAKDEESLNLAYKNIYPILLANRKE 229
>gi|18483230|gb|AAL73974.1|AF466201_3 TATA-binding protein [Sorghum bicolor]
Length = 203
Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 108/154 (70%), Gaps = 17/154 (11%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ ++N+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK+
Sbjct: 58 VDFRNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM--- 114
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
+A+I+++LG P K++ FKI NIV +CDV+FP++L+ L + H FSS
Sbjct: 115 --------------YARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSS 160
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAK 154
YEPELFPGLIYRM +P++VLLIFV+G+IV+TGAK
Sbjct: 161 YEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAK 194
>gi|145494864|ref|XP_001433426.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124400543|emb|CAK66029.1| unnamed protein product [Paramecium tetraurelia]
Length = 208
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 115/177 (64%), Gaps = 4/177 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+ +G L+L I++ R +EYNP +F +IM++ NP TT L FQSGK++ GAK
Sbjct: 28 QNVVSTVDLGTELNLVVISNGARMAEYNPKRFSAVIMRLNNPSTTALIFQSGKMVCTGAK 87
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDAL--HHVHSQFSSY 121
E +A+RK+AKI+++LG P ++ F I NIV + D R P+KLD + Y
Sbjct: 88 SEDQSLVAARKYAKIIQKLGFPAVFKNFTIQNIVASFDFRKPIKLDEFTKDQQYRPVVQY 147
Query: 122 EPELFPGLIYRMV--KPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPE+FPGLI+R + + ++ LLIFV+GR VITG K +L+ F I P+L FKK+
Sbjct: 148 EPEIFPGLIFRKITDQKKITLLIFVSGRCVITGGKKTEDLNNVFKFILPILDQFKKR 204
>gi|119601082|gb|EAW80676.1| TATA box binding protein like 2, isoform CRA_b [Homo sapiens]
Length = 113
Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 68/106 (64%), Positives = 91/106 (85%)
Query: 70 LASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGL 129
+ RK+A+++++LG P ++ FKI N+V +CDVRFP++L+ L H QFSSYEPELFPGL
Sbjct: 7 ITQRKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGL 66
Query: 130 IYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
IYRMVKPR+VLLIFV+G++V+TGAK RSE++EAF+NIYP+LK FKK
Sbjct: 67 IYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKK 112
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QNMVG+ V P+ L + + ++S Y P F GLI +++ PR L F SGK+++ GA
Sbjct: 31 QNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGA 90
Query: 63 KHEHDCKLASRKFAKILK 80
K + A ILK
Sbjct: 91 KERSEIYEAFENIYPILK 108
>gi|378755540|gb|EHY65566.1| TATA-binding protein, partial [Nematocida sp. 1 ERTm2]
Length = 159
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 67/132 (50%), Positives = 98/132 (74%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R +EYNP +F +I++I PRTT L F SGK+++ GA+
Sbjct: 28 QNIVATVNLCCRLDLKAIALGARNAEYNPKRFAAVIIRIRKPRTTALIFASGKMVVTGAR 87
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D K+A++K++ I+++LG+P+++ FKI NIV +CD +F ++L+ L HS +SSYEP
Sbjct: 88 SEEDSKMAAKKYSIIIRRLGYPVRFTEFKIQNIVSSCDTKFSIRLEGLVFGHSNYSSYEP 147
Query: 124 ELFPGLIYRMVK 135
ELFPGLIYRMVK
Sbjct: 148 ELFPGLIYRMVK 159
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
I NIV T ++ + L A+ + ++ + Y P+ F +I R+ KPR LIF +G++V+TG
Sbjct: 27 IQNIVATVNLCCRLDLKAIA-LGARNAEYNPKRFAAVIIRIRKPRTTALIFASGKMVVTG 85
Query: 153 AKSRSE 158
A+S +
Sbjct: 86 ARSEED 91
>gi|403220982|dbj|BAM39115.1| transcription initiation factor [Theileria orientalis strain
Shintoku]
Length = 276
Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 114/176 (64%), Gaps = 4/176 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V ++ +G LDL +I R +EYNP KF+ L++++ NP+ T L F++G+++I G+K
Sbjct: 101 QNIVASVHLGQELDLREIAISTRNAEYNPKKFNALVLRMQNPKCTGLIFRTGRIIITGSK 160
Query: 64 HEHDCKLASRKFAKIL-KQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
D KL +++ AK++ K+LG +K+ FKI NI+ T + P++L+ H + S+YE
Sbjct: 161 TIEDTKLGAKRMAKMIRKELGADLKFNNFKIENIIATFNCNVPIRLEVFSQEHKELSNYE 220
Query: 123 PELFPGLIYR---MVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
PE F GL+YR VLLIFV+G ++ITG KS E+ F +YP+L+ ++K
Sbjct: 221 PEFFAGLVYRCRISESSEAVLLIFVSGNVIITGCKSAHEIQYVFKTMYPILQQYQK 276
>gi|1078776|pir||S52407 TATA box-binding protein - Entamoeba histolytica
Length = 233
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 115/172 (66%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V +G L+L +I + + YNP +F G IM+I +P++T L FQ+GK++ G +
Sbjct: 57 NVVSRFQLGVKLELRKIVQKAINAIYNPKRFAGAIMRISSPKSTALIFQTGKIVCTGTRS 116
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
+ K+AS+K+AKI+K++G+PI Y F + NIV +CDV+F + L L F YEPE
Sbjct: 117 IEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRTLVDSDLAFCQYEPE 176
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
+FPGL+YRM P+V LL+F G++V+TGAK L+ A+ NIYP+L + +K+
Sbjct: 177 VFPGLVYRMASPKVTLLVFSTGKVVLTGAKDEESLNLAYKNIYPILLANRKE 228
>gi|398412558|ref|XP_003857600.1| hypothetical protein MYCGRDRAFT_32491 [Zymoseptoria tritici IPO323]
gi|339477485|gb|EGP92576.1| hypothetical protein MYCGRDRAFT_32491 [Zymoseptoria tritici IPO323]
Length = 177
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 110/172 (63%), Gaps = 1/172 (0%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V +++ C LDL I VR + Y P +F ++++ PR+T L F+SGK+ I+G K
Sbjct: 7 NVVAGVNLNCRLDLKHIALSVRNASYRPKRFPAVVVRQREPRSTALIFRSGKMQIVGTKS 66
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
D +LA RKFA++L++LG+ +++ F + N+V D R + L+ L + +YEPE
Sbjct: 67 VDDARLAGRKFARMLQKLGYQPRFEDFTVQNMVANVDTRMTIHLEGL-MLTPGTHNYEPE 125
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
LFPG +RMV P V L+F +G++V+ AK+ ++HEA+D YP+L F+K+
Sbjct: 126 LFPGAAFRMVDPLVTFLVFHSGKVVLLKAKNEEDMHEAWDKFYPLLMQFRKE 177
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QNMV + + L + Y P F G ++++P T L F SGK+++L AK
Sbjct: 96 QNMVANVDTRMTIHLEGLMLTPGTHNYEPELFPGAAFRMVDPLVTFLVFHSGKVVLLKAK 155
Query: 64 HEHDCKLASRKFAKILKQL 82
+E D A KF +L Q
Sbjct: 156 NEEDMHEAWDKFYPLLMQF 174
>gi|399217563|emb|CCF74450.1| unnamed protein product [Babesia microti strain RI]
Length = 283
Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 115/182 (63%), Gaps = 11/182 (6%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V ++ +G +DL Q+ R +EYNP K + LI ++L P+ T L FQ+G+++I GAK
Sbjct: 101 QNIVASVYIGIDIDLRQVAISTRNAEYNPKKVNALIFRLLKPKCTSLMFQTGRIMITGAK 160
Query: 64 HEHDCKLASRKFAKILKQL--GHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
D K+ +++ K+L ++ I+++ FKI NI+ T D PV+L++L + +F SY
Sbjct: 161 TIEDAKIGAKRIVKLLLKVLKSENIRFKNFKIENIIATADCCLPVRLESLARDYREFCSY 220
Query: 122 EPELFP------GLIYRMVKPR---VVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
EPELF GL+YR R VLL+FV+G+I+ITG KS E+H F +YP+L+
Sbjct: 221 EPELFAGEIFDSGLVYRCPPTRNTKAVLLVFVSGKIIITGCKSMREVHRVFTYMYPILRQ 280
Query: 173 FK 174
++
Sbjct: 281 YQ 282
>gi|301113196|ref|XP_002998368.1| TATA-box-binding protein [Phytophthora infestans T30-4]
gi|262111669|gb|EEY69721.1| TATA-box-binding protein [Phytophthora infestans T30-4]
Length = 220
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 103/159 (64%)
Query: 16 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 75
+D+ ++ VR ++Y P F L+M+ PR T L ++SGK +++GA D KLA+ K
Sbjct: 40 VDIKKLALLVRNADYAPRGFSALVMRFQAPRATVLLYRSGKFVVIGATSVADAKLAAEKL 99
Query: 76 AKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVK 135
ILK++ P F I N+V + DV F V+L+ L H +FS+YEPELFPGLIYRM++
Sbjct: 100 VSILKKVSFPSDNSPFTIRNVVGSADVCFRVRLEGLARDHLRFSTYEPELFPGLIYRMLR 159
Query: 136 PRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
P+ LLIF++G++VITG +S ++ A IYPVL ++
Sbjct: 160 PKCTLLIFISGKLVITGCESSADGERALGAIYPVLLQYR 198
>gi|367033977|ref|XP_003666271.1| hypothetical protein MYCTH_2310794 [Myceliophthora thermophila ATCC
42464]
gi|347013543|gb|AEO61026.1| hypothetical protein MYCTH_2310794 [Myceliophthora thermophila ATCC
42464]
Length = 242
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 109/167 (65%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T S+ C LDL I R EYN KFH L+M+I PRTT L F SG++++ GAK
Sbjct: 55 QNVVATASLECRLDLQAIAQHARNVEYNRRKFHALVMRIREPRTTTLVFASGRMVVTGAK 114
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+LA+R+ A+ +++ G P + F++ N V + F V+L+ + H + Q + +EP
Sbjct: 115 SAGLARLAARRHARAIQKCGFPTRLADFRVQNFVGSAACGFLVRLERISHRYWQSARHEP 174
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVL 170
ELFPGL+Y MV+P + L+F G++V+TGAK R ++ EAF N+YP+L
Sbjct: 175 ELFPGLVYTMVRPSLKCLVFTTGKVVLTGAKKREDVFEAFANLYPLL 221
>gi|300120388|emb|CBK19942.2| unnamed protein product [Blastocystis hominis]
Length = 199
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 112/174 (64%), Gaps = 2/174 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
N+V T+++ ++L ++ ++R +EYNP +F +IM+I P+ T L F+SGK+++ G K
Sbjct: 25 SNIVSTVNMKKEINLPEVVDKLRNTEYNPKRFDAMIMRIREPKCTALVFKSGKVVLAGTK 84
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFK--IHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
D + A R+ IL + K K IHN+V D +FP++L+ L + + ++Y
Sbjct: 85 STKDTEAAGRRVVDILSRFTGGNKSDDTKPIIHNMVAVGDFKFPIRLEGLSIEYLESTTY 144
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELF GLIYRM P VVLLIFV+G++V+TGAK S++ +AF I P++ + +K
Sbjct: 145 EPELFSGLIYRMKNPDVVLLIFVSGKVVVTGAKDESDIRQAFRKISPLIYNCRK 198
>gi|440294161|gb|ELP87178.1| TATA-box-binding protein, putative [Entamoeba invadens IP1]
Length = 233
Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 120/173 (69%), Gaps = 1/173 (0%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V T + LDL +I + R +EYNP +F G IM+I +P++T L FQ+GK++ G +
Sbjct: 56 NVVSTFQLNQQLDLRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCTGTRS 115
Query: 65 EHDCKLASRKFAKILKQLGH-PIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ K+A++K+AKI+K++G+ +++ F + NIV +CDV+F + L +L+ ++ YEP
Sbjct: 116 IEESKIAAKKYAKIIKKIGYNEVRFSNFNVQNIVGSCDVKFQISLRSLYDSNTDMCQYEP 175
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
E+FPGL++RM +P+V LL+F G++V+TGAK L+ A+ IYP+L + KK+
Sbjct: 176 EVFPGLVFRMTQPKVTLLVFSTGKVVLTGAKDDESLNTAYTKIYPILLANKKE 228
>gi|440298942|gb|ELP91557.1| TATA-box-binding protein, putative [Entamoeba invadens IP1]
Length = 233
Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 120/173 (69%), Gaps = 1/173 (0%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V T + LDL +I + R +EYNP +F G IM+I +P++T L FQ+GK++ G +
Sbjct: 56 NVVSTFQLNQQLDLRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCTGTRS 115
Query: 65 EHDCKLASRKFAKILKQLGH-PIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ K+A++K+AKI+K++G+ +++ F + NIV +CDV+F + L +L+ ++ YEP
Sbjct: 116 IEESKIAAKKYAKIIKKIGYNEVRFSNFNVQNIVGSCDVKFQISLRSLYDSNTDMCQYEP 175
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
E+FPGL++RM +P+V LL+F G++V+TGAK L+ A+ IYP+L + KK+
Sbjct: 176 EVFPGLVFRMTQPKVTLLVFSTGKVVLTGAKDDESLNTAYTKIYPILLANKKE 228
>gi|123507489|ref|XP_001329427.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121912382|gb|EAY17204.1| hypothetical protein TVAG_291560 [Trichomonas vaginalis G3]
Length = 235
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 108/172 (62%), Gaps = 3/172 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + GC LDL +I S R SEYNP +F ++ P+ T LAF++GK+ I+G K
Sbjct: 56 NIVACVDYGCKLDLLKITSSTRNSEYNPIRFPAATLRNKEPKATALAFKNGKVNIVGCKS 115
Query: 65 EHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHV--HSQFSSY 121
A+R F ++ K +G +K + F I N+V T D +FP+ L+++ H +F++Y
Sbjct: 116 ADIALKAARCFGRLFKNIGIKDVKIKSFSIANMVATMDCKFPIHLESIASSPGHIKFATY 175
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
PE++ GLIYR+ P+ L+I+V+G+I+ITGAKS EL A IYP+L+ F
Sbjct: 176 NPEIYAGLIYRLASPKTTLMIYVSGKIIITGAKSEEELKAASAFIYPILRLF 227
>gi|298710178|emb|CBJ26253.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 358
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 112/185 (60%), Gaps = 14/185 (7%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILN---PRTTCLAFQSGKLLILG 61
N+ T + C +DL + R R +EYNP +F I++++N P+ T L F++GK+++ G
Sbjct: 137 NVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTG 196
Query: 62 AKHEHDCKLASRKFAKILKQL-------GHPIKY---QGFKIHNIVCTCDVRFPVKLDAL 111
++ A + FA+IL +L H I + + ++ N+V T DV FP++L+ L
Sbjct: 197 SRSNASVDYACKTFARILSKLDNGSGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGL 256
Query: 112 HHVHSQ-FSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVL 170
+ F +YEPELFPGLIYRM P++ LIFV+G++V+TGAKS +L + F +YP L
Sbjct: 257 VASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTL 316
Query: 171 KSFKK 175
FKK
Sbjct: 317 CQFKK 321
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 4 QNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QNMV T VG P+ L + +++ + Y P F GLI ++ +P+ L F SGK+++ G
Sbjct: 239 QNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTG 298
Query: 62 AKHEHDCKLASRKFAKILKQL 82
AK + +K L Q
Sbjct: 299 AKSAQQLEDGFKKMYPTLCQF 319
>gi|71033019|ref|XP_766151.1| transcription initiation factor TFIID [Theileria parva strain
Muguga]
gi|68353108|gb|EAN33868.1| transcription initiation factor TFIID, putative [Theileria parva]
Length = 222
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 108/175 (61%), Gaps = 4/175 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V ++ +G LDL +I R +EYNP KF+ L++++ NP+ T L F++G+++I G+K
Sbjct: 47 QNIVASVHLGEELDLREIAISTRNAEYNPKKFNALVLRMQNPKCTGLIFRTGRIIITGSK 106
Query: 64 HEHDCKLASRKFAKIL-KQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
D +L ++ AK++ K+ G +K+ FKI NI+ T P++L+ H +YE
Sbjct: 107 TIEDTRLGGKRMAKMIRKETGLDLKFNNFKIENIIATFSCNVPIRLEVFSQEHKDLCNYE 166
Query: 123 PELFPGLIYRM---VKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
PE F GL+YR + VLLIFV+G ++ITG KS E+ F +YP+L ++
Sbjct: 167 PEFFAGLVYRCRINEESEAVLLIFVSGNVIITGCKSAQEIQYVFKTMYPILHQYQ 221
>gi|156083957|ref|XP_001609462.1| TATA-box binding protein [Babesia bovis T2Bo]
gi|154796713|gb|EDO05894.1| TATA-box binding protein [Babesia bovis]
Length = 277
Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 114/175 (65%), Gaps = 4/175 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V ++ +G +DL +I R +EYNP KF+ LI+++ NPR T L F++G+L++ G K
Sbjct: 102 QNIVASVHLGNEIDLREIAISTRNAEYNPRKFNALILRMQNPRCTGLVFRTGRLIVTGCK 161
Query: 64 HEHDCKLASRKFAKIL-KQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
+L +++ AK++ ++LG I++ FKI NI+ T + P++L+ L+ H F +YE
Sbjct: 162 TVESARLGAKRIAKMVRRELGGGIQFNDFKIENIIATFNCNVPIRLERLYEEHKLFCNYE 221
Query: 123 PELFPGLIYRMVKP---RVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
PE+F GL+YR+ P VLL+FV+G +++TG +S +++ + + P+L FK
Sbjct: 222 PEIFAGLVYRIAIPCKSEAVLLVFVSGNVIVTGCRSPEDIYLIYRRMAPILCEFK 276
>gi|294939318|ref|XP_002782410.1| TATA-binding protein, putative [Perkinsus marinus ATCC 50983]
gi|239894016|gb|EER14205.1| TATA-binding protein, putative [Perkinsus marinus ATCC 50983]
Length = 273
Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 115/161 (71%), Gaps = 2/161 (1%)
Query: 16 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 75
+DL ++ + R +EYNP K + ++++ +P+ T + + +GK+++ G+ E K A++K
Sbjct: 112 IDLKKVAFKARNAEYNPRKVNAVVIRFRDPKATAMLYGTGKVMVTGSNSEETAKDAAKKV 171
Query: 76 AKI-LKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRM 133
AKI +K +P +++ FKI N+V + DVRFP++L+AL + H + SYEPEL+PGL++R+
Sbjct: 172 AKIVIKSGAYPQARFRRFKIENMVASADVRFPIRLEALAYEHRSYCSYEPELYPGLVFRL 231
Query: 134 VKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
+P+V LLIFV+G+IV TGAK+R ++ AF NIYP+L ++
Sbjct: 232 FEPKVALLIFVSGKIVFTGAKNRDDITNAFRNIYPLLLKYQ 272
>gi|348669793|gb|EGZ09615.1| hypothetical protein PHYSODRAFT_522103 [Phytophthora sojae]
Length = 216
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 103/159 (64%)
Query: 16 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 75
+++ ++ VR ++Y P F L+M+ PR T L ++SGK +++GA D KLA+ K
Sbjct: 43 VNIEKLALLVRNADYAPRSFSALVMRFQEPRATVLVYRSGKFVVIGATSVDDSKLAADKL 102
Query: 76 AKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVK 135
I K++ P F + N+V + DV F ++L+ L H +FS+YEPE+FPGLIYRM++
Sbjct: 103 VSIFKKVSFPSDCSPFTVRNVVGSSDVGFRIRLEGLARDHLRFSTYEPEMFPGLIYRMLR 162
Query: 136 PRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
P+ LLIF++G+IVITG +S ++ +A I+PVL ++
Sbjct: 163 PKCTLLIFISGKIVITGCESPAQGEKALGKIFPVLLQYR 201
>gi|221057235|ref|XP_002259755.1| transcription initiation factor TFiid,TATA-binding protein
[Plasmodium knowlesi strain H]
gi|193809827|emb|CAQ40531.1| transcription initiation factor TFiid,TATA-binding protein,
putative [Plasmodium knowlesi strain H]
Length = 250
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 110/174 (63%), Gaps = 4/174 (2%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N++ + ++ +DL + +R +EYNP K + LI+++ P+ T L F+SG+L++ G K
Sbjct: 76 NIIASANLSVDIDLRLVAISIRNAEYNPSKINTLIVRLNKPKCTVLIFKSGRLMLTGTKT 135
Query: 65 EHDCKLASRKFAKILKQL-GHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ D +K KI+K + P+K +GF I NI+ + D P++L+ L H H + +YEP
Sbjct: 136 KADAIYGCKKIGKIIKLVTNEPVKLEGFNIENIIASADCNMPIRLEMLAHDHKDYCNYEP 195
Query: 124 ELFPGLIYR---MVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
ELF GL+YR K + V+LIFV+G+I+ITG KS +L+ FD+IY VL ++
Sbjct: 196 ELFAGLVYRYKPTSKLKSVILIFVSGKIIITGCKSVQKLYTVFDDIYNVLLQYR 249
>gi|294939316|ref|XP_002782409.1| TATA-binding protein, putative [Perkinsus marinus ATCC 50983]
gi|239894015|gb|EER14204.1| TATA-binding protein, putative [Perkinsus marinus ATCC 50983]
Length = 302
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 115/162 (70%), Gaps = 2/162 (1%)
Query: 16 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 75
+DL ++ + R +EYNP K + ++++ +P+ T + + +GK+++ G+ E K A++K
Sbjct: 141 IDLKKVAFKARNAEYNPRKVNAVVIRFRDPKATAMLYGTGKVMVTGSNSEETAKDAAKKV 200
Query: 76 AKI-LKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRM 133
AKI +K +P +++ FKI N+V + DVRFP++L+AL + H + SYEPEL+PGL++R+
Sbjct: 201 AKIVIKSGAYPQARFRRFKIENMVASADVRFPIRLEALAYEHRSYCSYEPELYPGLVFRL 260
Query: 134 VKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
+P+V LLIFV+G+IV TGAK+R ++ AF NIYP+L ++
Sbjct: 261 FEPKVALLIFVSGKIVFTGAKNRDDITNAFRNIYPLLLKYQN 302
>gi|389748066|gb|EIM89244.1| TATA-box binding protein-like protein [Stereum hirsutum FP-91666
SS1]
Length = 249
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 109/172 (63%), Gaps = 14/172 (8%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
Q +V T+++ C LDL I R +EY P F +I+ I +P+ T L F SGK+++ AK
Sbjct: 51 QTIVVTVNLDCRLDLKTIALHARNAEYTPKCFAAIIVCIRDPKMTALIFPSGKMIVTDAK 110
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D +LA RK+A+I+++LG K+ FKI NIV +CD++F ++L+ L ++ +
Sbjct: 111 SEDDSRLAPRKYARIVQKLGFNAKFSEFKIQNIVRSCDIKFFIRLEGLAYITGSSA---- 166
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
LFPGLIYRM+KP+VVLLIFV+ R E++ AF+ +Y VL F+K
Sbjct: 167 -LFPGLIYRMIKPKVVLLIFVS---------VREEIYTAFNTVYTVLVEFRK 208
>gi|281203489|gb|EFA77689.1| TATA-binding protein [Polysphondylium pallidum PN500]
Length = 192
Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 103/173 (59%), Gaps = 34/173 (19%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++G LDL I R +EYNP +F +IM+I P+TT L F+SGK++ GAK
Sbjct: 31 QNIVSTVNMGTQLDLKTIALGARNAEYNPKRFAAVIMRIREPKTTALIFKSGKMVCTGAK 90
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+RK+A+I+++L P ++ FKI NIV +CDV+FP+KL+ L++ H+ F++
Sbjct: 91 SEEASKLAARKYARIIQKLDFPAQFTDFKIQNIVGSCDVKFPIKLEMLNNTHNSFTNV-- 148
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
R E++EAF+NIYPVL ++KKQ
Sbjct: 149 --------------------------------REEIYEAFENIYPVLTTYKKQ 169
Score = 42.4 bits (98), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
+ NIV T ++ + L + + ++ + Y P+ F +I R+ +P+ LIF +G++V TG
Sbjct: 30 LQNIVSTVNMGTQLDLKTIA-LGARNAEYNPKRFAAVIMRIREPKTTALIFKSGKMVCTG 88
Query: 153 AKSR 156
AKS
Sbjct: 89 AKSE 92
>gi|84998870|ref|XP_954156.1| transcription initiation factor (TBP ) [Theileria annulata]
gi|65305154|emb|CAI73479.1| transcription initiation factor (TBP homologue), putative
[Theileria annulata]
Length = 222
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 108/175 (61%), Gaps = 4/175 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V ++ +G LDL +I R +EYNP KF+ L++++ NP+ T L F++G+++I G+K
Sbjct: 47 QNIVASVHLGEELDLREIAISTRNAEYNPRKFNALVLRMQNPKCTGLIFRTGRIIITGSK 106
Query: 64 HEHDCKLASRKFAKIL-KQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
D KL ++ AK++ K+ G +K+ FKI NI+ T P++L+ H +YE
Sbjct: 107 TIEDAKLGGKRMAKMIRKETGLDLKFNNFKIENIIATFSCNVPIRLEVFSQEHKDLCNYE 166
Query: 123 PELFPGLIYRM---VKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
PE F GL+YR + VLLIFV+G ++ITG KS E+ F +YP+L ++
Sbjct: 167 PEFFAGLVYRCRINEESEAVLLIFVSGNVIITGCKSPQEIQYVFKIMYPILHQYQ 221
>gi|428671167|gb|EKX72085.1| transcription factor TFIID or TATA-binding protein, TBP, putative
[Babesia equi]
Length = 304
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 112/177 (63%), Gaps = 5/177 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V ++ +G LDL +I R +EYNP KF+ L++++ NP+ T L F++G+++I G++
Sbjct: 128 QNIVASVHLGRELDLREIAISTRNAEYNPKKFNALVLRMHNPKCTGLIFRTGRIIITGSR 187
Query: 64 HEHDCKLASRKFAKILKQL--GHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
+L +++ AKI++++ G ++ FKI NI+ T + P++L+ L H +Y
Sbjct: 188 TTEAARLGAKRMAKIIRRVLGGDDFAFRNFKIENIIATFNCNVPIRLEVLSSEHEDLCNY 247
Query: 122 EPELFPGLIYRMV---KPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPE F GL++R VLLIFV+G ++ITG KS E+H F+ ++P+L +++
Sbjct: 248 EPEFFAGLVFRFSLTDTSEAVLLIFVSGNVIITGCKSMEEVHHVFNTMHPILLRYQE 304
>gi|367044928|ref|XP_003652844.1| hypothetical protein THITE_2046631 [Thielavia terrestris NRRL 8126]
gi|347000106|gb|AEO66508.1| hypothetical protein THITE_2046631 [Thielavia terrestris NRRL 8126]
Length = 224
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 111/171 (64%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R EY KFH L+M+I PRTT L F SG++++ GAK
Sbjct: 49 QNVVATVNLDCRLDLTLIAQQARNVEYRRKKFHALVMRIREPRTTTLVFASGRMVVAGAK 108
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+LA+R+ A+ +++ G +++ F + N V + FP++L+ + + +++ +EP
Sbjct: 109 SAELARLAARRHARAIQKCGFRTRFRDFAVQNFVGSAACGFPIRLEGIARQYWEWARHEP 168
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
E+FPGL++ + KP + L+F G++V+TGAK ++HEAF +YPVL +K
Sbjct: 169 EIFPGLVFTVQKPSLKCLVFTTGKVVLTGAKCEDDVHEAFAYLYPVLLDYK 219
>gi|429216623|ref|YP_007174613.1| TATA-box binding protein [Caldisphaera lagunensis DSM 15908]
gi|429133152|gb|AFZ70164.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Caldisphaera lagunensis DSM 15908]
Length = 209
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 108/172 (62%), Gaps = 2/172 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+ + PLDLN I +R+ +YNP +F GL+ ++ +P+ T L F+SGK+++ GAK
Sbjct: 32 ENIVATVILDTPLDLNLIETRIPDVDYNPDQFPGLVYRLQSPKITALIFKSGKMVVTGAK 91
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
A + K L G P++ + +I NIV + ++ V L+ + S YE
Sbjct: 92 SVKQLVWAVKTILKKLMIKGVPMQGKPQIQIQNIVASANLNVDVDLEKAAFTLPK-SMYE 150
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
PE FPGLIYRM KPRVVLLIF +G++VITGAK SE+ +A + IY +LK K
Sbjct: 151 PEQFPGLIYRMEKPRVVLLIFSSGKMVITGAKRESEVQDAVNGIYNILKGNK 202
>gi|18313147|ref|NP_559814.1| transcription factor [Pyrobaculum aerophilum str. IM2]
gi|24638239|sp|Q8ZVR0.1|TBP_PYRAE RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|18160658|gb|AAL63996.1| transcription initiation factor TFIID (TATA-binding) [Pyrobaculum
aerophilum str. IM2]
Length = 199
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 107/171 (62%), Gaps = 2/171 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+++G LDL Q+ R+ +EYNP +F GLI+++ PR + L F++GK++ GAK
Sbjct: 11 ENIVATVNLGVELDLEQLAERLTMAEYNPDQFPGLILRLTKPRISALIFRTGKMVCTGAK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
+E D K A R K+LK G + + +I NIV + ++ V L+ + + + YE
Sbjct: 71 NEEDLKNAVRALVKLLKDHGADVPFDPEVQIQNIVASGNLHAEVDLEQ-AVLMLENAMYE 129
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
PE FPGLIYRM PRVV+LIF +G+IV TGAKS ++ A +Y LK
Sbjct: 130 PEQFPGLIYRMSSPRVVILIFGSGKIVCTGAKSEKDVATAVQKLYNQLKEL 180
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ +DL Q + + Y P +F GLI ++ +PR L F SGK++
Sbjct: 99 VQIQNIVASGNLHAEVDLEQAVLMLENAMYEPEQFPGLIYRMSSPRVVILIFGSGKIVCT 158
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK E D A +K LK+LG
Sbjct: 159 GAKSEKDVATAVQKLYNQLKELG 181
>gi|389584271|dbj|GAB67004.1| transcription initiation factor TFiid TATA-binding protein, partial
[Plasmodium cynomolgi strain B]
Length = 246
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 108/170 (63%), Gaps = 4/170 (2%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N++ + ++ +DL + +R +EYNP K + LI+++ P+ T L F+SG+L++ G K
Sbjct: 76 NIIASANLSVEIDLRLVAISIRNAEYNPSKINTLIVRLNKPKCTVLIFKSGRLMLTGTKT 135
Query: 65 EHDCKLASRKFAKILKQL-GHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ D A +K KI++ + +K +GF I NI+ + D P++L+ L H H + +YEP
Sbjct: 136 KGDAIYACKKIGKIIRLVTNESVKLEGFNIENIIASADCNMPIRLEMLAHDHKDYCNYEP 195
Query: 124 ELFPGLIYR---MVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVL 170
ELF GL+YR K + V+LIFV+G+I+ITG KS +L+ FD+IY VL
Sbjct: 196 ELFAGLVYRYKPTSKLKSVILIFVSGKIIITGCKSVQKLYTVFDDIYNVL 245
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 92 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
KIHNI+ + ++ + L L + + + Y P LI R+ KP+ +LIF +GR+++T
Sbjct: 73 KIHNIIASANLSVEIDL-RLVAISIRNAEYNPSKINTLIVRLNKPKCTVLIFKSGRLMLT 131
Query: 152 GAKSRSE 158
G K++ +
Sbjct: 132 GTKTKGD 138
>gi|326432022|gb|EGD77592.1| TATA-box-binding protein [Salpingoeca sp. ATCC 50818]
Length = 271
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 123/228 (53%), Gaps = 57/228 (25%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNP------------------R 46
N+V T+++G LDL I R ++Y P +F ++M+I + +
Sbjct: 44 NVVATVNLGLTLDLKYIAMHARNAQYTPNRFSAMVMRIRDEEKQNTSHIASRRRTGRPMK 103
Query: 47 TTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH---------------------- 84
T L F +GKL+ G K + + A++KFAKI++++ H
Sbjct: 104 ATALVFATGKLICTGTKGPEEARAAAKKFAKIIRKILHLERAEKAAAREAATAMLTEHGG 163
Query: 85 -----------------PIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFP 127
+++ GFK+ N+V CD RFP++L+AL + FS+YEPELFP
Sbjct: 164 QRDHDDEEEEGEQEEAARVRFDGFKVQNMVAKCDCRFPIRLEALQAHYPVFSTYEPELFP 223
Query: 128 GLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
GL++RM +PR V+L FV+G++VITGAKSR ++ EAFDNI +LK F+K
Sbjct: 224 GLVFRMAEPRCVVLCFVSGKLVITGAKSREQIQEAFDNICDMLKPFRK 271
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVR-YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QNMV P+ L + + +S Y P F GL+ ++ PR L F SGKL+I GA
Sbjct: 190 QNMVAKCDCRFPIRLEALQAHYPVFSTYEPELFPGLVFRMAEPRCVVLCFVSGKLVITGA 249
Query: 63 KHEHDCKLASRKFAKILK 80
K + A +LK
Sbjct: 250 KSREQIQEAFDNICDMLK 267
>gi|149047098|gb|EDL99818.1| TATA box binding protein, isoform CRA_b [Rattus norvegicus]
Length = 262
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 95/174 (54%), Gaps = 56/174 (32%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK+
Sbjct: 143 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM---- 198
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
VCT SY
Sbjct: 199 -----------------------------------VCTGA-----------------KSY 206
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 207 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 260
>gi|156094392|ref|XP_001613233.1| transcription initiation factor TFiid, TATA-binding protein
[Plasmodium vivax Sal-1]
gi|148802107|gb|EDL43506.1| transcription initiation factor TFiid, TATA-binding protein,
putative [Plasmodium vivax]
Length = 250
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 110/174 (63%), Gaps = 4/174 (2%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N++ + ++ +DL + +R +EYNP K + LI+++ P+ T L F++G++++ G K
Sbjct: 76 NIIASANLCVDIDLRLVAISIRNAEYNPSKINTLIVRLNKPKCTALIFKNGRIMLTGTKT 135
Query: 65 EHDCKLASRKFAKILKQL-GHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ D +K KI+K + +K +GF I NI+ + D PV+L+ L H H ++ +YEP
Sbjct: 136 KADAIYGCKKIGKIIKLVTNESVKLEGFNIENIIASADCNMPVRLEMLAHDHKEYCNYEP 195
Query: 124 ELFPGLIYR---MVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
ELF GL+YR K + V+LIFV+G+I+ITG KS +L+ FD+IY VL ++
Sbjct: 196 ELFAGLVYRYKPTSKLKSVILIFVSGKIIITGCKSVQKLYTVFDDIYNVLLQYR 249
>gi|16741283|gb|AAH16476.1| TATA box binding protein [Mus musculus]
gi|148688515|gb|EDL20462.1| TATA box binding protein, isoform CRA_c [Mus musculus]
Length = 260
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 95/174 (54%), Gaps = 56/174 (32%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK+
Sbjct: 141 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM---- 196
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
VCT SY
Sbjct: 197 -----------------------------------VCTGA-----------------KSY 204
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+K
Sbjct: 205 EPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 258
>gi|171185805|ref|YP_001794724.1| transcription factor [Pyrobaculum neutrophilum V24Sta]
gi|226703562|sp|B1Y949.1|TBP_THENV RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|170935017|gb|ACB40278.1| 2-alkenal reductase [Pyrobaculum neutrophilum V24Sta]
Length = 197
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 107/171 (62%), Gaps = 2/171 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+++G LDL ++ R+ +EYNP +F GLI+++ PR + L F++GK++ GAK
Sbjct: 11 ENIVATVNLGVELDLEKLAERLTMAEYNPDQFPGLILRLTKPRISALIFRTGKMVCTGAK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
+E D K A R K+LK G + + +I NIV + ++ V L+ + + + YE
Sbjct: 71 NEEDLKNAVRALVKLLKDHGADVPFDPEVQIQNIVASGNLFAEVDLEQ-AVLMLENAMYE 129
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
PE FPGLIYRM PRVV+LIF +G+IV TGAKS ++ A +Y LK
Sbjct: 130 PEQFPGLIYRMSSPRVVILIFGSGKIVCTGAKSEKDVATAVQKLYNQLKDL 180
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ +DL Q + + Y P +F GLI ++ +PR L F SGK++
Sbjct: 99 VQIQNIVASGNLFAEVDLEQAVLMLENAMYEPEQFPGLIYRMSSPRVVILIFGSGKIVCT 158
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK E D A +K LK LG
Sbjct: 159 GAKSEKDVATAVQKLYNQLKDLG 181
>gi|82596850|ref|XP_726432.1| transcription initiation factor TFIId [Plasmodium yoelii yoelii
17XNL]
gi|23481840|gb|EAA17997.1| transcription initiation factor tfiid [Plasmodium yoelii yoelii]
Length = 285
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 112/175 (64%), Gaps = 6/175 (3%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N++ + ++ +DL + ++ +EYNP K + LI++I NP+ T L F+SG++++ G K+
Sbjct: 111 NIISSANLDTEIDLRLVAISIKSAEYNPSKINTLIIRINNPKCTALIFKSGRIMLTGTKN 170
Query: 65 EHDCKLASRKFAKILKQL-GHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ D +K KI+K + I+ + FKI NI+ + + PV+L+ L H H ++ +YEP
Sbjct: 171 KTDSIKGCKKIGKIIKLVTNQNIRLKNFKIENIIASANCNIPVRLEMLAHDHKEYCNYEP 230
Query: 124 ELFPGLIYRMVKP----RVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
ELF GL+YR KP + V+LIFV+G+I+ITG KS +L+ F +IY VL +K
Sbjct: 231 ELFAGLVYRY-KPTSNLKSVILIFVSGKIIITGCKSLQKLNTVFQDIYNVLVQYK 284
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
KIHNI+ + ++ + L L + + + Y P LI R+ P+ LIF +GRI++
Sbjct: 107 LKIHNIISSANLDTEIDL-RLVAISIKSAEYNPSKINTLIIRINNPKCTALIFKSGRIML 165
Query: 151 TGAKSRSE 158
TG K++++
Sbjct: 166 TGTKNKTD 173
>gi|119872319|ref|YP_930326.1| transcription factor [Pyrobaculum islandicum DSM 4184]
gi|166227824|sp|A1RSQ1.1|TBP_PYRIL RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|119673727|gb|ABL87983.1| TATA binding protein of transcription factor TFIID [Pyrobaculum
islandicum DSM 4184]
Length = 199
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 107/171 (62%), Gaps = 2/171 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+++G LDL ++ R+ +EYNP +F GLI+++ PR + L F++GK++ GAK
Sbjct: 11 ENIVATVNLGVELDLEKLAERLAMAEYNPDQFPGLILRLTKPRISALIFRTGKMVCTGAK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
+E D K A R K+L+ G + + ++ NIV + ++ V L+ + + + YE
Sbjct: 71 NEEDLKNAVRALVKLLRDHGAEVPFDPEVQVQNIVASGNLHAEVDLEQ-AVLMLENAMYE 129
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
PE FPGLIYRM PRVV+LIF +G+IV TGAKS ++ A +Y LK
Sbjct: 130 PEQFPGLIYRMSSPRVVMLIFGSGKIVCTGAKSERDVATAVQKLYNQLKDL 180
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ +DL Q + + Y P +F GLI ++ +PR L F SGK++
Sbjct: 99 VQVQNIVASGNLHAEVDLEQAVLMLENAMYEPEQFPGLIYRMSSPRVVMLIFGSGKIVCT 158
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK E D A +K LK LG
Sbjct: 159 GAKSERDVATAVQKLYNQLKDLG 181
>gi|167522359|ref|XP_001745517.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775866|gb|EDQ89488.1| predicted protein [Monosiga brevicollis MX1]
Length = 211
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 101/169 (59%), Gaps = 1/169 (0%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T ++L ++ + R EYNP +F +++ P +T L F SGKL+I+G K
Sbjct: 36 ENVVATGYFSGKVNLAEVQKKTRNIEYNPRRFAACVIRNKLPHSTGLLFSSGKLVIMGCK 95
Query: 64 HEHDCKLASRKFAKI-LKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E + A KF I +K+ + GFKIHN+V DV F + L LH HS+F +Y+
Sbjct: 96 SEEQAEQAWSKFQDIVIKRCNIAVTPTGFKIHNVVGKVDVGFKIDLHKLHMEHSKFVTYD 155
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLK 171
PE FPGL YRM P VVLL+F +G++V+T AK+R E+ E I P LK
Sbjct: 156 PETFPGLTYRMQDPSVVLLVFHSGKVVLTKAKTRLEMIEGLRRILPTLK 204
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 5 NMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
N+VG + VG +DL++++ ++ Y+P F GL ++ +P L F SGK+++ AK
Sbjct: 128 NVVGKVDVGFKIDLHKLHMEHSKFVTYDPETFPGLTYRMQDPSVVLLVFHSGKVVLTKAK 187
Query: 64 HEHDCKLASRKFAKILKQ 81
+ R+ LK+
Sbjct: 188 TRLEMIEGLRRILPTLKE 205
>gi|145591042|ref|YP_001153044.1| transcription factor [Pyrobaculum arsenaticum DSM 13514]
gi|379004488|ref|YP_005260160.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Pyrobaculum oguniense TE7]
gi|145282810|gb|ABP50392.1| TATA binding protein of transcription factor TFIID [Pyrobaculum
arsenaticum DSM 13514]
gi|375159941|gb|AFA39553.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Pyrobaculum oguniense TE7]
Length = 201
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 105/171 (61%), Gaps = 2/171 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+++ LDL + R+ +EYNP +F GLI+++ PR + L F++GK++ GAK
Sbjct: 11 ENIVATVNLQVELDLEMLAERLAMAEYNPDQFPGLILRLTKPRISALIFRTGKMVATGAK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
+E D K A R K+LK G + + ++ NIV + ++ V L+ + + + YE
Sbjct: 71 NEEDLKNAVRALVKLLKDHGADVPFDPEVQVQNIVASGNLHAEVDLEQ-AVLMLENAMYE 129
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
PE FPGLIYRM PRVV+LIF +G+IV TGAKS ++ A +Y LK
Sbjct: 130 PEQFPGLIYRMTNPRVVILIFGSGKIVCTGAKSERDVATAVQKLYNQLKEL 180
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ +DL Q + + Y P +F GLI ++ NPR L F SGK++
Sbjct: 99 VQVQNIVASGNLHAEVDLEQAVLMLENAMYEPEQFPGLIYRMTNPRVVILIFGSGKIVCT 158
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK E D A +K LK+LG
Sbjct: 159 GAKSERDVATAVQKLYNQLKELG 181
>gi|126459691|ref|YP_001055969.1| transcription factor [Pyrobaculum calidifontis JCM 11548]
gi|166227823|sp|A3MV36.1|TBP_PYRCJ RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|126249412|gb|ABO08503.1| TATA binding protein of transcription factor TFIID [Pyrobaculum
calidifontis JCM 11548]
Length = 199
Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 107/172 (62%), Gaps = 4/172 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+++G LDL + R+ +EYNP +F GLI+++ PR + L F++GK++ GAK
Sbjct: 11 ENIVATVNLGVELDLESLAERLPMAEYNPDQFPGLILRLTKPRISALIFRTGKMVCTGAK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLD-ALHHVHSQFSSY 121
+E D K A R K+L G + + +I NIV + ++ V L+ A+ + + + Y
Sbjct: 71 NEEDLKNAVRALVKLLNDHGAEVPFDPEVQIQNIVASGNLHAEVDLEQAVFMLEN--AMY 128
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
EPE FPGLIYRM PRVV+LIF +G+IV TGAKS ++ A +Y LK
Sbjct: 129 EPEQFPGLIYRMSSPRVVILIFGSGKIVCTGAKSEKDVATAVQKLYNQLKEL 180
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ +DL Q + + Y P +F GLI ++ +PR L F SGK++
Sbjct: 99 VQIQNIVASGNLHAEVDLEQAVFMLENAMYEPEQFPGLIYRMSSPRVVILIFGSGKIVCT 158
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK E D A +K LK+LG
Sbjct: 159 GAKSEKDVATAVQKLYNQLKELG 181
>gi|348523966|ref|XP_003449494.1| PREDICTED: TATA box-binding protein-like protein 2-like
[Oreochromis niloticus]
Length = 319
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N++ T+ +GC LDL I R+ EY P F G+I +I P T FQSGK++ LG K
Sbjct: 125 NVISTVDLGCSLDLKFIARRMWNVEYKPQTFTGIIARIREPEATVTIFQSGKIISLGTKS 184
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
+ +LA+RKFA+ L++ G P+++ FKI NIV C FPV L L VH SYEPE
Sbjct: 185 VEESRLAARKFARKLQKFGFPVRFLNFKIQNIVAFCQT-FPVDLAELQKVHRGQCSYEPE 243
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
++ GL+ + + + +F G I + GAK+ +E++E F I +L+ +K++
Sbjct: 244 MYNGLVLDQITG-IRVSLFSTGYINVFGAKTWAEVNEVFKTICRILREYKRE 294
>gi|297527104|ref|YP_003669128.1| TATA-box binding family protein [Staphylothermus hellenicus DSM
12710]
gi|297256020|gb|ADI32229.1| TATA-box binding family protein [Staphylothermus hellenicus DSM
12710]
Length = 196
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 103/164 (62%), Gaps = 2/164 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+ + LDLN I SRV Y P +F GLI+++ P+TT L F+SGK+++ GAK
Sbjct: 18 ENIVATVIIDQSLDLNLIESRVPNVSYQPDQFPGLILRLEKPKTTALIFKSGKMVVTGAK 77
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
A +K K+L++ G I + +I NIV + D+ + L+ ++ S YE
Sbjct: 78 STQQLIDAVKKIIKLLRKYGIKIVSKPRIQIQNIVASGDINAYINLERAAYLLED-SMYE 136
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
PE FPGLI+RM +PRVVLLIF +G++VITGAK SE+ A NI
Sbjct: 137 PEQFPGLIHRMREPRVVLLIFSSGKMVITGAKEESEVEMAVRNI 180
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 92 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
KI NIV T + + L+ + S Y+P+ FPGLI R+ KP+ LIF +G++V+T
Sbjct: 16 KIENIVATVIIDQSLDLNLIESRVPNVS-YQPDQFPGLILRLEKPKTTALIFKSGKMVVT 74
Query: 152 GAKSRSELHEAFDNIYPVLKSF 173
GAKS +L +A I +L+ +
Sbjct: 75 GAKSTQQLIDAVKKIIKLLRKY 96
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + + ++L + + S Y P +F GLI ++ PR L F SGK++I
Sbjct: 106 IQIQNIVASGDINAYINLERAAYLLEDSMYEPEQFPGLIHRMREPRVVLLIFSSGKMVIT 165
Query: 61 GAKHEHDCKLASRKFA 76
GAK E + ++A R A
Sbjct: 166 GAKEESEVEMAVRNIA 181
>gi|126466212|ref|YP_001041321.1| transcription factor [Staphylothermus marinus F1]
gi|126015035|gb|ABN70413.1| TATA binding protein of transcription factor TFIID [Staphylothermus
marinus F1]
Length = 196
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 103/164 (62%), Gaps = 2/164 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+ + LDLN I SRV Y P +F GLI+++ P+TT L F+SGK+++ GAK
Sbjct: 18 ENIVATVILDQSLDLNLIESRVPNVSYQPDQFPGLILRLEKPKTTALIFKSGKMVVTGAK 77
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
A +K K+L++ G I + +I NIV + D+ + L+ ++ S YE
Sbjct: 78 STQQLIDAVKKIIKLLRKYGIKIVSKPRIQIQNIVASGDINAYINLERAAYLLED-SMYE 136
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
PE FPGLI+RM +PRVVLLIF +G++VITGAK SE+ A NI
Sbjct: 137 PEQFPGLIHRMREPRVVLLIFSSGKMVITGAKEESEVETAVRNI 180
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
Query: 92 KIHNIVCTCDVRFPVKLDALHHVHSQFS--SYEPELFPGLIYRMVKPRVVLLIFVNGRIV 149
KI NIV T V LD L+ + S+ SY+P+ FPGLI R+ KP+ LIF +G++V
Sbjct: 16 KIENIVAT--VILDQSLD-LNLIESRVPNVSYQPDQFPGLILRLEKPKTTALIFKSGKMV 72
Query: 150 ITGAKSRSELHEAFDNIYPVLKSF 173
+TGAKS +L +A I +L+ +
Sbjct: 73 VTGAKSTQQLIDAVKKIIKLLRKY 96
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + + ++L + + S Y P +F GLI ++ PR L F SGK++I
Sbjct: 106 IQIQNIVASGDINAYINLERAAYLLEDSMYEPEQFPGLIHRMREPRVVLLIFSSGKMVIT 165
Query: 61 GAKHEHDCKLASRKFA 76
GAK E + + A R A
Sbjct: 166 GAKEESEVETAVRNIA 181
>gi|14423938|sp|P58177.1|TBP_PYROC RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|13752554|gb|AAK38723.1|AF367981_1 TATA-binding protein [Pyrodictium occultum]
Length = 199
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 110/176 (62%), Gaps = 6/176 (3%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
+ +N+V T+S+ LDLN I + EYNP +F GL+ ++ +P+ T L F+SGK+++ G
Sbjct: 22 NIENIVATVSLDQTLDLNLIERSILTVEYNPEQFPGLVYRLDSPKVTALIFKSGKMVVTG 81
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQF 118
AK D A +K + LK+ H I+ G +I NIV + ++ V L+ + +
Sbjct: 82 AKSTRDLIEAVKKIVRNLKK--HGIQIYGRPKVQIQNIVASANLNVCVDLER-AALTLEN 138
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
S YEPE FPGLI+RM +PRVVLLIF +G++VITGAK E++EA + IY LK +
Sbjct: 139 SMYEPEQFPGLIHRMDEPRVVLLIFSSGKMVITGAKREEEVYEAVNKIYEKLKKLR 194
>gi|124027807|ref|YP_001013127.1| transcription factor [Hyperthermus butylicus DSM 5456]
gi|123978501|gb|ABM80782.1| TATA-box binding protein [Hyperthermus butylicus DSM 5456]
Length = 202
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 107/172 (62%), Gaps = 2/172 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+S+ LDL I + EYNP +F GL+ ++ P+ T L F+SGK+++ GAK
Sbjct: 27 ENIVATVSLDQQLDLRLIERSILTVEYNPEQFPGLVYRLDEPKVTALIFKSGKMVVTGAK 86
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
D A +K + LK+ G PI + +I NIV + ++ V L+ + + S YE
Sbjct: 87 STKDLIEAVKKIVRNLKKHGIPIYGRPKVQIQNIVASANLNVCVDLER-AALTLENSMYE 145
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
PE FPGLI+RM +PRVVLLIF +G++VITGAK E++EA + IY LK +
Sbjct: 146 PEQFPGLIHRMDEPRVVLLIFSSGKMVITGAKREEEVYEAVNKIYEKLKKLR 197
>gi|374325915|ref|YP_005084115.1| hypothetical protein P186_0409 [Pyrobaculum sp. 1860]
gi|356641184|gb|AET31863.1| hypothetical protein P186_0409 [Pyrobaculum sp. 1860]
Length = 186
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 102/165 (61%), Gaps = 2/165 (1%)
Query: 10 ISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCK 69
+++G LDL Q+ R+ +EYNP +F GLI+++ PR + L F++GK++ GAK+E D K
Sbjct: 1 MNLGVELDLEQLAERLTMAEYNPDQFPGLILRLTKPRISALIFRTGKMVCTGAKNEEDLK 60
Query: 70 LASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPG 128
A R K+LK G + + +I NIV + ++ V L+ + + + YEPE FPG
Sbjct: 61 NAVRALVKLLKDHGADVPFDPEVQIQNIVASGNLHAEVDLEQ-AVLMLENAMYEPEQFPG 119
Query: 129 LIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
LIYRM PRVV+LIF +G+IV TGAKS ++ A +Y LK
Sbjct: 120 LIYRMSSPRVVILIFGSGKIVCTGAKSEKDVATAVQKLYAQLKDL 164
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ +DL Q + + Y P +F GLI ++ +PR L F SGK++
Sbjct: 83 VQIQNIVASGNLHAEVDLEQAVLMLENAMYEPEQFPGLIYRMSSPRVVILIFGSGKIVCT 142
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK E D A +K LK LG
Sbjct: 143 GAKSEKDVATAVQKLYAQLKDLG 165
>gi|171691522|ref|XP_001910686.1| hypothetical protein [Podospora anserina S mat+]
gi|170945709|emb|CAP71822.1| unnamed protein product [Podospora anserina S mat+]
Length = 223
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 109/181 (60%), Gaps = 10/181 (5%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN V T+++ C +DLN + R R EY P +F+ +IM+I +PRTT L F +G++++ GAK
Sbjct: 32 QNFVVTVNLDCRIDLNYLAQRARNVEYRPRRFNAVIMRIRDPRTTALIFATGRMVVTGAK 91
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF-SSYE 122
E +LA++K L++ G K++ F + NI+ + +V F ++L+ L + + +S+
Sbjct: 92 SEALARLAAKKHTYALQKCGFTPKFRDFTVQNIIGSANVGFNIRLEGLANKYVTVGASFV 151
Query: 123 PELFPGLIYRMV-------KPRV--VLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
PE+FPGL ++ PR LLIF G+IV+TGAK+ + AF +YP+ F
Sbjct: 152 PEIFPGLSFKQYLGYRADGTPRSCPTLLIFTTGKIVVTGAKTEEDFRAAFARVYPLFFDF 211
Query: 174 K 174
+
Sbjct: 212 R 212
>gi|302347997|ref|YP_003815635.1| TATA-box-binding protein [Acidilobus saccharovorans 345-15]
gi|302328409|gb|ADL18604.1| TATA-box-binding protein [Acidilobus saccharovorans 345-15]
Length = 207
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 109/177 (61%), Gaps = 6/177 (3%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V T+ + LDLN I +R+ +YNP +F GL+ ++ +P+ T L F+SGK+++
Sbjct: 31 VNIENIVATVILENTLDLNLIEARIPDVDYNPDQFPGLVYRLQSPKITALVFKSGKMVVT 90
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQ 117
GAK A + K K + I QG +I NIV + ++ V L+ V
Sbjct: 91 GAKSVKQLVWAVKAILK--KFITKGIVIQGRPQIQIQNIVASANLNVVVDLEKAAFVLPH 148
Query: 118 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
S YEPE FPGLI+RM KPRVVLLIF +G++VITGAK +E++EA +NIY +L K
Sbjct: 149 -SMYEPEQFPGLIFRMDKPRVVLLIFSSGKMVITGAKRENEVYEAVNNIYKILDENK 204
>gi|352681411|ref|YP_004891935.1| Box A binding protein [Thermoproteus tenax Kra 1]
gi|269990956|emb|CAP46909.1| TATA-box binding protein [Thermoproteus tenax Kra 1]
gi|350274210|emb|CCC80855.1| TATA-box binding protein (Box A binding protein) (TBP)
[Thermoproteus tenax Kra 1]
Length = 203
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 103/171 (60%), Gaps = 2/171 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+++G LDL Q+ R+ +EYNP +F GLI+++ PR + L F++GK++ GAK
Sbjct: 14 ENIVATVNLGVELDLEQLAERLPVAEYNPDQFPGLILRLTRPRISALIFRTGKMVCTGAK 73
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
+E D K A K+L G + ++ NIV + + V L+ + + YE
Sbjct: 74 NETDLKNAVHALVKLLNDNGADVPLNPEVQVQNIVASGSLNAEVDLEQAALLLDN-AMYE 132
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
PE FPGLIYRM +PRVV+LIF +G+IV TGAKS ++ A +Y LK
Sbjct: 133 PEQFPGLIYRMTEPRVVVLIFGSGKIVCTGAKSEKDVAVAVQRLYDRLKEL 183
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + S+ +DL Q + + Y P +F GLI ++ PR L F SGK++
Sbjct: 102 VQVQNIVASGSLNAEVDLEQAALLLDNAMYEPEQFPGLIYRMTEPRVVVLIFGSGKIVCT 161
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK E D +A ++ LK+LG
Sbjct: 162 GAKSEKDVAVAVQRLYDRLKELG 184
>gi|392522653|gb|AFM78115.1| TATA box-binding protein, partial [Skeletonema costatum]
Length = 114
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 92
+F +IM++ PR T L F SG++++ G K H+ LA+RKFA IL+++G P FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGRMVVTGTKSTHNSALATRKFAYILERVGFQPAGMLDFK 61
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
+ NIV T DV FP++L+ L + H FSSYEPELFPGLIYR+V+PRVVLLIFV+
Sbjct: 62 VQNIVGTVDVGFPIRLEGLVYAHPTFSSYEPELFPGLIYRLVQPRVVLLIFVS 114
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
QN+VGT+ VG P+ L + + +S Y P F GLI +++ PR L F S
Sbjct: 63 QNIVGTVDVGFPIRLEGLVYAHPTFSSYEPELFPGLIYRLVQPRVVLLIFVS 114
>gi|431904621|gb|ELK10003.1| TATA-box-binding protein [Pteropus alecto]
Length = 193
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 82/117 (70%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 65 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 124
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 118
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDV+FP++L+ L H QF
Sbjct: 125 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQF 181
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 92 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
++ NIV T ++ + L + + ++ + Y P+ F +I R+ +PR LIF +G++V T
Sbjct: 65 QLQNIVSTVNLGCKLDLKTIA-LRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 123
Query: 152 GAKSRSE 158
GAKS +
Sbjct: 124 GAKSEEQ 130
>gi|145509947|ref|XP_001440912.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408140|emb|CAK73515.1| unnamed protein product [Paramecium tetraurelia]
Length = 201
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 106/176 (60%), Gaps = 9/176 (5%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+ +G L+L I++ R +EYNP +F +IM++ NP TT L FQSGK++ GAK
Sbjct: 28 QNVVSTVDLGTELNLVVISNGARMAEYNPKRFSAVIMRLSNPSTTALIFQSGKMVCTGAK 87
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDAL-HHVHSQFSSYE 122
E +A+RK+AKI+ +LG P+ + + + + + L + YE
Sbjct: 88 SEDQSLIAARKYAKIINKLGFPV------VTLLQASTSESQSNQTNLLKDQQYRSVVQYE 141
Query: 123 PELFPGLIYRMV--KPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
PE+FPGLI+R + + ++ LLIFV+GR VITG K +L+ F I P+L FKK+
Sbjct: 142 PEIFPGLIFRKITDQKKITLLIFVSGRCVITGGKKTEDLNNVFKFILPILDQFKKR 197
>gi|392522721|gb|AFM78149.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 81/113 (71%), Gaps = 1/113 (0%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 92
+F +IM++ PR T L F SG++++ G K H+ LA+RKFA IL+++G P FK
Sbjct: 2 RFAAVIMRLREPRATALIFSSGRMVVTGTKSTHNSALATRKFAYILERVGFQPAGMLDFK 61
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
+ NIV T DV FP++L+ L H FSSYEPELFPGLIYR+V+PRVVLLIFV+
Sbjct: 62 VQNIVGTVDVGFPIRLEGLVFAHPTFSSYEPELFPGLIYRLVQPRVVLLIFVS 114
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
QN+VGT+ VG P+ L + + +S Y P F GLI +++ PR L F S
Sbjct: 63 QNIVGTVDVGFPIRLEGLVFAHPTFSSYEPELFPGLIYRLVQPRVVLLIFVS 114
>gi|326431087|gb|EGD76657.1| TATA box binding protein [Salpingoeca sp. ATCC 50818]
Length = 166
Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 96/151 (63%), Gaps = 1/151 (0%)
Query: 5 NMVGTISVG-CPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
N+V T + L L +I + + SEYNP ++ +IM+I P T L F +GK++I+GAK
Sbjct: 16 NIVATAHLSRTQLKLEEIAEKAKNSEYNPKRYSAIIMRIKEPSATALIFSTGKVVIMGAK 75
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E A+R+FA+ + + G + + KIHN+V D+ F + LD LH H +S+Y+P
Sbjct: 76 SEEAAHAAARQFAQNITKAGTRVSLREIKIHNVVGRVDIGFKLHLDNLHVEHPAWSTYDP 135
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAK 154
E FPGL YRM +P VVLLIF +G+IV+T AK
Sbjct: 136 ESFPGLTYRMQEPDVVLLIFHSGKIVLTKAK 166
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 93 IHNIVCTCDV-RFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
I NIV T + R +KL+ + ++ S Y P+ + +I R+ +P LIF G++VI
Sbjct: 14 IVNIVATAHLSRTQLKLEEIAE-KAKNSEYNPKRYSAIIMRIKEPSATALIFSTGKVVIM 72
Query: 152 GAKSR 156
GAKS
Sbjct: 73 GAKSE 77
>gi|326432016|gb|EGD77586.1| hypothetical protein PTSG_08683 [Salpingoeca sp. ATCC 50818]
Length = 185
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 100/172 (58%), Gaps = 39/172 (22%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V T+++ LDL I VR +EY+P +F ++M+I +PRTT L F +GKL+ GAK
Sbjct: 53 NIVATVNLATHLDLKHITLSVRNAEYSPKRFSAVVMRIRSPRTTALVFATGKLICTGAKS 112
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
D + +RKFAKI+K++G FS
Sbjct: 113 TEDAYVGARKFAKIIKKIG----------------------------------FS----- 133
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
LFPGLI+RM PRVV+LIFV+G++VITGAKS ++ +AFDNI +L++F+K
Sbjct: 134 LFPGLIFRMADPRVVVLIFVSGKLVITGAKSHEDIEQAFDNICILLQTFRKS 185
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 55 GKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 114
G ++ G + A + + L Q G P ++ NIV T V LD H
Sbjct: 19 GAVVASGGNTGNAVSAAGGETSSALVQTGRP------EVVNIVAT--VNLATHLDLKHIT 70
Query: 115 HS-QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELH 160
S + + Y P+ F ++ R+ PR L+F G+++ TGAKS + +
Sbjct: 71 LSVRNAEYSPKRFSAVVMRIRSPRTTALVFATGKLICTGAKSTEDAY 117
>gi|385805423|ref|YP_005841821.1| TATA-box-binding protein (TATA-box factor) [Fervidicoccus fontis
Kam940]
gi|383795286|gb|AFH42369.1| TATA-box-binding protein (TATA-box factor) [Fervidicoccus fontis
Kam940]
Length = 206
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 106/177 (59%), Gaps = 8/177 (4%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V T+++ LDL++I +V EYNP +F GL+ ++ P+ T L F+SGK+++
Sbjct: 18 VQIENIVATVTLDQQLDLHEIERKVPRVEYNPDQFPGLVFRLDRPKITALIFKSGKMVVT 77
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKL-DALHHVHS 116
G+K + A ++ K H IK G +I NIV + ++ V L DA + + +
Sbjct: 78 GSKSTQELITAVKRIIKTF--YNHGIKITGRPKIQIQNIVASANLNVDVNLEDAAYKLEN 135
Query: 117 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGLI+RM P VVLLIF +G++VITGAK E+ +A +NIY LK
Sbjct: 136 NM--YEPEQFPGLIHRMTDPYVVLLIFSSGKMVITGAKREEEVSKAVENIYKTLKEL 190
>gi|325185920|emb|CCA20424.1| TATAboxbinding protein putative [Albugo laibachii Nc14]
Length = 203
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 111/179 (62%), Gaps = 5/179 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ +N+V + ++G DL I S+ R +E P K + ++MKI +P TT + F +GKL+
Sbjct: 9 LDIKNVVCSANLGMRFDLTDLLIKSQKR-AELVPKK-NCILMKIPSPDTTAMLFSNGKLV 66
Query: 59 ILGAKHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQ 117
+ GA E K A+RKF +I++++ +P + FKI NI+ CDV F + ++ H+
Sbjct: 67 VTGANSEDQVKTAARKFTQIIQKMDYPGVNLIDFKIRNIIGNCDVGFRILMEKFAAAHAS 126
Query: 118 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YEPEL+P LIYR+ P V +L+FV+G++V TG+K +LH A + IYP+L F+ +
Sbjct: 127 RCIYEPELYPALIYRLAHPSVKILVFVSGKVVFTGSKDPRDLHAACEQIYPLLVQFEDK 185
>gi|327311063|ref|YP_004337960.1| TATA-box-binding protein [Thermoproteus uzoniensis 768-20]
gi|326947542|gb|AEA12648.1| TATA-box-binding protein [Thermoproteus uzoniensis 768-20]
Length = 207
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 104/171 (60%), Gaps = 2/171 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+++G LDL Q+ ++ +EYNP +F GLI+++ PR + L F++GK++ GAK
Sbjct: 14 ENIVATVNLGVELDLEQLAEKLPVAEYNPDQFPGLILRLTKPRISALIFRTGKMVCTGAK 73
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
+E+D K A K+L G + ++ NIV + + V L+ + + + YE
Sbjct: 74 NENDLKNAVHALVKLLNDHGANVPLNPEVQVQNIVASGSLNAEVDLEQ-AALLLENAMYE 132
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
PE FPGLIYRM PRVV+LIF +G+IV TGAKS ++ A +Y L+
Sbjct: 133 PEQFPGLIYRMTDPRVVVLIFGSGKIVCTGAKSEKDVAVAVQQLYDKLREI 183
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + S+ +DL Q + + Y P +F GLI ++ +PR L F SGK++
Sbjct: 102 VQVQNIVASGSLNAEVDLEQAALLLENAMYEPEQFPGLIYRMTDPRVVVLIFGSGKIVCT 161
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK E D +A ++ L+++G
Sbjct: 162 GAKSEKDVAVAVQQLYDKLREIG 184
>gi|392522775|gb|AFM78176.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFK 92
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I++++G + FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSTHNASLASKKFALIIEEVGFETAPEVDFK 61
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
+ NIV T DV FP++L+ L + HS F+SYEPELFPGLIYR+V+PRVV+LIFV+
Sbjct: 62 VQNIVGTADVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
QN+VGT VG P+ L + + ++ Y P F GLI +++ PR L F S
Sbjct: 63 QNIVGTADVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
>gi|392522731|gb|AFM78154.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 92
+F +IM++ PR T L F SGK +I G K H+ LA++K A IL+++G P Y FK
Sbjct: 2 RFAAVIMRLREPRATALVFASGKTVITGTKSSHNSSLATKKIAYILERIGFQPASYINFK 61
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
+ NIV T DV FP++L+ + H FSSYEPELFPGLIYR+V+PRV LLIFV+
Sbjct: 62 VQNIVGTVDVGFPIRLEGVAFAHPTFSSYEPELFPGLIYRLVQPRVCLLIFVS 114
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
QN+VGT+ VG P+ L + + +S Y P F GLI +++ PR L F S
Sbjct: 63 QNIVGTVDVGFPIRLEGVAFAHPTFSSYEPELFPGLIYRLVQPRVCLLIFVS 114
>gi|392522723|gb|AFM78150.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 81/113 (71%), Gaps = 1/113 (0%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIK-YQGFK 92
+F +IM++ PR T L F SG++++ G K H+ LA+RKFA IL+++G + FK
Sbjct: 2 RFAAVIMRLREPRATALIFSSGRMVVTGTKSTHNSALATRKFAYILERVGFQLAGMLDFK 61
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
+ NIV T DV FP++L+ L H FSSYEPELFPGLIYR+V+PRVVLLIFV+
Sbjct: 62 VQNIVGTVDVGFPIRLEGLVFAHPTFSSYEPELFPGLIYRLVQPRVVLLIFVS 114
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
QN+VGT+ VG P+ L + + +S Y P F GLI +++ PR L F S
Sbjct: 63 QNIVGTVDVGFPIRLEGLVFAHPTFSSYEPELFPGLIYRLVQPRVVLLIFVS 114
>gi|325188734|emb|CCA23265.1| TATAboxbinding protein putative [Albugo laibachii Nc14]
Length = 216
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 107/173 (61%), Gaps = 6/173 (3%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYN-PGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
N++G+ S+ LD+ + +R ++Y G F+G+I++ PR + +A++SGK +++GAK
Sbjct: 30 NLLGSGSIRGALDVKNLALMIRNADYAVRGGFNGMILRFRTPRASVIAYRSGKFIVIGAK 89
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
L +KF IL++ G P + FKIHN CD++F + A +Q YEP
Sbjct: 90 SPAVADLVIQKFQDILQKSGAPHELVSFKIHNFCAACDLKF--RKIAYKDASAQ---YEP 144
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
ELFPGLIYRM+ P+ +L+F++G+IVITG + + +A NI+PVL F+ Q
Sbjct: 145 ELFPGLIYRMLVPKCTMLVFISGKIVITGFQKIEDGEQALCNIFPVLCKFRIQ 197
>gi|392522725|gb|AFM78151.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 80/113 (70%), Gaps = 1/113 (0%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 92
+F +IM++ PR T L F SGK++I G K H+ LA++K A IL+++G P Y FK
Sbjct: 2 RFAAVIMRLREPRATALVFASGKIVITGTKSSHNSGLATKKIAYILERVGFRPSSYINFK 61
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
+ NIV T DV FP++L+ + H FSSYEPELFPGLIYR+ +PRVVLLIFV+
Sbjct: 62 VQNIVGTVDVGFPIRLEGVAFAHPTFSSYEPELFPGLIYRLGQPRVVLLIFVS 114
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
QN+VGT+ VG P+ L + + +S Y P F GLI ++ PR L F S
Sbjct: 63 QNIVGTVDVGFPIRLEGVAFAHPTFSSYEPELFPGLIYRLGQPRVVLLIFVS 114
>gi|126723804|gb|ABO26816.1| TATA-box binding protein, partial [Perna canaliculus]
Length = 111
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 79/111 (71%)
Query: 13 GCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLAS 72
GC LDL +I R +EYNP +F +IM+I +PRTT L F SGK++ GAK E KLA+
Sbjct: 1 GCKLDLKRIALHARNAEYNPKRFAAVIMRIRDPRTTALIFSSGKMVCTGAKSEDQAKLAA 60
Query: 73 RKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
RK+A+I+++LG K+ FKI N+V +CDV+FP++L+ L H QFSSYEP
Sbjct: 61 RKYARIVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 111
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 114 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSE 158
+H++ + Y P+ F +I R+ PR LIF +G++V TGAKS +
Sbjct: 11 LHARNAEYNPKRFAAVIMRIRDPRTTALIFSSGKMVCTGAKSEDQ 55
>gi|11497985|ref|NP_069209.1| transcription factor [Archaeoglobus fulgidus DSM 4304]
gi|6647869|sp|O29874.1|TBP_ARCFU RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|2650259|gb|AAB90862.1| transcription initiation factor IID [Archaeoglobus fulgidus DSM
4304]
Length = 183
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 107/175 (61%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + +G +DLN+I+ ++ SEY P +F GL+++ P+ L F+SGK++
Sbjct: 6 IKIENVVASTQIGENIDLNKISREIKDSEYKPKQFPGLVLRTKEPKAAALVFRSGKVVCT 65
Query: 61 GAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
G+K D + A ++ K+LK++G I K+ NIV + D+ + L+A+ + +
Sbjct: 66 GSKSVEDARRAVKQIVKMLKEIGISVIDEPEVKVQNIVASADLGVDLNLNAIAIGLGLEN 125
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ PRVV+LIF +G++V+TG KS + +A + I L++
Sbjct: 126 IEYEPEQFPGLVYRLDNPRVVVLIFGSGKMVVTGGKSPEDARKAVERISEELRTL 180
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ NPR L F SGK++
Sbjct: 97 VKVQNIVASADLGVDLNLNAIAIGLGLENIEYEPEQFPGLVYRLDNPRVVVLIFGSGKMV 156
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
+ G K D + A + ++ L+ LG
Sbjct: 157 VTGGKSPEDARKAVERISEELRTLG 181
>gi|392522651|gb|AFM78114.1| TATA box-binding protein, partial [Chaetoceros affinis]
gi|392522765|gb|AFM78171.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522771|gb|AFM78174.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522773|gb|AFM78175.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522777|gb|AFM78177.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFK 92
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I++++G + FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSTHNASLASKKFALIIEKVGFKTAPEVDFK 61
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
+ NIV T DV FP++L+ L + HS F+SYEPELFPGLIYR+V+PRVV+LIFV+
Sbjct: 62 VQNIVGTADVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
QN+VGT VG P+ L + + ++ Y P F GLI +++ PR L F S
Sbjct: 63 QNIVGTADVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
>gi|193875778|gb|ACF24525.1| TATA binding protein of TFIID [Gymnochlora stellata]
Length = 162
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 98/156 (62%), Gaps = 1/156 (0%)
Query: 16 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 75
LDL ++ + + SEYNP +FH LI++ +P+ T L F+SGK++ G K E + K AS KF
Sbjct: 1 LDLKKVALKAKNSEYNPKRFHALILRSRDPKATALIFKSGKMVCTGTKTETEAKEASLKF 60
Query: 76 AKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMV 134
K++KQ G + + + N+V TCD R P+ LD + + YEPE+FPGL++R
Sbjct: 61 LKVIKQAGFTKAMLKNYSVRNVVATCDYRSPINLDPIFFGYRDQCMYEPEIFPGLLFRPN 120
Query: 135 KPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVL 170
K ++V++ F +G+IVITG S +L++ + + +L
Sbjct: 121 KAKIVVIFFSSGKIVITGVNSMEKLNKIHNMVLKIL 156
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 114 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLK 171
+ ++ S Y P+ F LI R P+ LIF +G++V TG K+ +E EA V+K
Sbjct: 8 LKAKNSEYNPKRFHALILRSRDPKATALIFKSGKMVCTGTKTETEAKEASLKFLKVIK 65
>gi|307594950|ref|YP_003901267.1| TATA-box binding family protein [Vulcanisaeta distributa DSM 14429]
gi|307550151|gb|ADN50216.1| TATA-box binding family protein [Vulcanisaeta distributa DSM 14429]
Length = 193
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 109/171 (63%), Gaps = 2/171 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+++G LDL+++ R+ +EYNP +F GLI+++ P+ + L F++GK++ GAK
Sbjct: 9 ENIVATVNLGIDLDLDKLAERLPAAEYNPEQFPGLILRLQRPKISALIFRTGKMVCTGAK 68
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E++ K A ++ ++L + G + ++ NIV + ++ V ++ + + S YE
Sbjct: 69 SENELKRAVKELVRLLNEHGADVPLTPEIQVQNIVASGNLHAEVDIEK-SALMLENSMYE 127
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
PE FPGLIYRM P+VVLLIF +G+IV TGAK ++ +A I+ +LK
Sbjct: 128 PEQFPGLIYRMDDPKVVLLIFSSGKIVCTGAKKEQQVRDAVFKIHDILKDI 178
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ +D+ + + S Y P +F GLI ++ +P+ L F SGK++
Sbjct: 97 IQVQNIVASGNLHAEVDIEKSALMLENSMYEPEQFPGLIYRMDDPKVVLLIFSSGKIVCT 156
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK E + A K ILK +G
Sbjct: 157 GAKKEQQVRDAVFKIHDILKDIG 179
>gi|392522727|gb|AFM78152.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522729|gb|AFM78153.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 92
+F +IM++ PR T L F SGKL+I G K H+ LA++K A IL+++G P Y FK
Sbjct: 2 RFAAVIMRLREPRATALVFASGKLVITGTKSSHNSSLATKKIAYILERVGFQPASYINFK 61
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
+ NIV T DV FP++L+ + H FSSYEPELFPGLIYR+ +PRVV LIFV+
Sbjct: 62 MQNIVGTVDVGFPIRLEGVAFGHPTFSSYEPELFPGLIYRLFEPRVVFLIFVS 114
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
QN+VGT+ VG P+ L + +S Y P F GLI ++ PR L F S
Sbjct: 63 QNIVGTVDVGFPIRLEGVAFGHPTFSSYEPELFPGLIYRLFEPRVVFLIFVS 114
>gi|392522769|gb|AFM78173.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFK 92
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I++++G + FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSTHNASLASKKFALIIEKVGFKTAPEVDFK 61
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
+ NIV T DV FP++L+ L + HS F+SYEPELFPGLIYR+V+PRVV+LIFV+
Sbjct: 62 VQNIVGTADVGFPIQLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
QN+VGT VG P+ L + + ++ Y P F GLI +++ PR L F S
Sbjct: 63 QNIVGTADVGFPIQLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
>gi|325969184|ref|YP_004245376.1| 2-alkenal reductase [Vulcanisaeta moutnovskia 768-28]
gi|323708387|gb|ADY01874.1| 2-alkenal reductase [Vulcanisaeta moutnovskia 768-28]
Length = 193
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 109/171 (63%), Gaps = 2/171 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+++G LDL+++ R+ +EYNP +F GLI+++ P+ + L F++GK++ GAK
Sbjct: 9 ENIVATVNLGIDLDLDKLAERLPAAEYNPEQFPGLILRLQRPKISALIFRTGKMVCTGAK 68
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E++ K A ++ ++L + G + ++ NIV + ++ V ++ + + S YE
Sbjct: 69 SENELKRAVKELVRLLNEHGADVPLTPEIQVQNIVASGNLHAEVDIEK-SALMLENSMYE 127
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
PE FPGLIYRM P+VVLLIF +G+IV TGAK ++ +A I+ VL+
Sbjct: 128 PEQFPGLIYRMDDPKVVLLIFSSGKIVCTGAKKEQQVRDAVFKIHDVLRDI 178
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ +D+ + + S Y P +F GLI ++ +P+ L F SGK++
Sbjct: 97 IQVQNIVASGNLHAEVDIEKSALMLENSMYEPEQFPGLIYRMDDPKVVLLIFSSGKIVCT 156
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK E + A K +L+ +G
Sbjct: 157 GAKKEQQVRDAVFKIHDVLRDIG 179
>gi|327400113|ref|YP_004340952.1| TATA-box-binding protein [Archaeoglobus veneficus SNP6]
gi|327315621|gb|AEA46237.1| TATA-box-binding protein [Archaeoglobus veneficus SNP6]
Length = 184
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 106/175 (60%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + +G +DLN+I V+ +EY P +F GL+++ P+ L F+SGK++
Sbjct: 7 IKIENVVASTQIGENIDLNKIAKEVKDAEYKPKQFPGLVLRTKEPKAAALIFRSGKVVCT 66
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
G+K D A R+ KI+ +LG P+ + K+ NIV + D+ + L+A+ + +
Sbjct: 67 GSKSVEDANRAVRQVVKIISELGIPVILEPEVKVQNIVASADLGVDLNLNAIAIGLGLEN 126
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ KPRVV+LIF +G++V+TG K+ + +A + I L +
Sbjct: 127 IEYEPEQFPGLVYRLDKPRVVVLIFGSGKMVVTGGKNPEDAVKAVERIAEELSAL 181
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ PR L F SGK++
Sbjct: 98 VKVQNIVASADLGVDLNLNAIAIGLGLENIEYEPEQFPGLVYRLDKPRVVVLIFGSGKMV 157
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
+ G K+ D A + A+ L LG
Sbjct: 158 VTGGKNPEDAVKAVERIAEELSALG 182
>gi|118638415|gb|ABL09366.1| TATA-box binding protein alternative transcript cTBP2 [Gallus
gallus]
Length = 81
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 71/79 (89%)
Query: 97 VCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSR 156
V +CDV+FP++L+ L H QFSSYEPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R
Sbjct: 1 VGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVR 60
Query: 157 SELHEAFDNIYPVLKSFKK 175
+E++EAF+NIYP+LK F+K
Sbjct: 61 AEIYEAFENIYPILKGFRK 79
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 7 VGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHE 65
VG+ V P+ L + + ++S Y P F GLI +++ PR L F SGK+++ GAK
Sbjct: 1 VGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVR 60
Query: 66 HDCKLASRKFAKILK 80
+ A ILK
Sbjct: 61 AEIYEAFENIYPILK 75
>gi|14423943|sp|Q9UWN7.1|TBP_SULAC RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|6578935|gb|AAF18138.1|AF205428_1 TATA-box binding protein [Sulfolobus acidocaldarius]
Length = 197
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 104/168 (61%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V T+++ LDL + V EY+P +F GLI ++ +P+ T L F+SGK+++
Sbjct: 12 VNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVT 71
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK + A ++ K LK+ G + + +I NIV + ++ V LD + +
Sbjct: 72 GAKSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLLEN-N 130
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIY 167
YEPE FPGLIYRM +PRVVLLIF +G++VITGAK E+H+A I+
Sbjct: 131 MYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDEVHKAVKKIF 178
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
I NIV T + + L A+ Y+P+ FPGLI+R+ P++ LIF +G++V+TG
Sbjct: 14 IENIVATVTLDQTLDLYAMERSVPNVE-YDPDQFPGLIFRLESPKITSLIFKSGKMVVTG 72
Query: 153 AKSRSELHEAFDNIYPVLKSFKKQ 176
AKS EL +A I LK + Q
Sbjct: 73 AKSTDELIKAVKRIIKTLKKYGMQ 96
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ ++L++ + + Y P +F GLI ++ PR L F SGK++I
Sbjct: 103 IQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVIT 162
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GAK E + A +K L +L
Sbjct: 163 GAKREDEVHKAVKKIFDKLVEL 184
>gi|38492428|pdb|1MP9|A Chain A, Tbp From A Mesothermophilic Archaeon, Sulfolobus
Acidocaldarius
gi|38492429|pdb|1MP9|B Chain B, Tbp From A Mesothermophilic Archaeon, Sulfolobus
Acidocaldarius
gi|1419209|emb|CAA64405.1| box A binding protein (BAP) [Sulfolobus acidocaldarius]
Length = 198
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 104/168 (61%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V T+++ LDL + V EY+P +F GLI ++ +P+ T L F+SGK+++
Sbjct: 13 VNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVT 72
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK + A ++ K LK+ G + + +I NIV + ++ V LD + +
Sbjct: 73 GAKSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLLEN-N 131
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIY 167
YEPE FPGLIYRM +PRVVLLIF +G++VITGAK E+H+A I+
Sbjct: 132 MYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDEVHKAVKKIF 179
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
I NIV T + + L A+ Y+P+ FPGLI+R+ P++ LIF +G++V+TG
Sbjct: 15 IENIVATVTLDQTLDLYAMERSVPNVE-YDPDQFPGLIFRLESPKITSLIFKSGKMVVTG 73
Query: 153 AKSRSELHEAFDNIYPVLKSFKKQ 176
AKS EL +A I LK + Q
Sbjct: 74 AKSTDELIKAVKRIIKTLKKYGMQ 97
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ ++L++ + + Y P +F GLI ++ PR L F SGK++I
Sbjct: 104 IQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVIT 163
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GAK E + A +K L +L
Sbjct: 164 GAKREDEVHKAVKKIFDKLVEL 185
>gi|118431620|ref|NP_148219.2| transcription factor [Aeropyrum pernix K1]
gi|152031704|sp|Q9YAT1.3|TBP_AERPE RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|116062944|dbj|BAA80867.2| TATA-box binding protein [Aeropyrum pernix K1]
Length = 203
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 106/170 (62%), Gaps = 2/170 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+ + LDLN I ++++ +YNP +F GL+ ++ +PR T L F+SGK++I GAK
Sbjct: 26 ENIVATVILENQLDLNLIETKIQDVDYNPDQFPGLVYRLESPRVTVLIFKSGKMVITGAK 85
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
+ +K K G PI + +I NIV + +++ + L+ + + S YE
Sbjct: 86 SINQLIHVVKKLLKAFADQGIPISGKPQIQIQNIVASANLKVYIDLEK-AALEFENSLYE 144
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
PE FPGLIYRM +PRVV+LIF +G++VITGAK +E+++A + LK
Sbjct: 145 PEQFPGLIYRMDEPRVVMLIFSSGKMVITGAKMENEVYDAVKKVARKLKE 194
>gi|68074137|ref|XP_678983.1| transcription initiation factor TFiid, TATA-binding protein
[Plasmodium berghei strain ANKA]
gi|56499609|emb|CAH98178.1| transcription initiation factor TFiid, TATA-binding protein,
putative [Plasmodium berghei]
Length = 252
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 111/175 (63%), Gaps = 6/175 (3%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N++ + ++ ++L + ++ +EYNP K + LI++I NP+ T L F+SG++++ G K
Sbjct: 78 NIISSANLDAEINLRLVAVSIKSAEYNPSKINTLIIRINNPKCTALIFKSGRIMLTGTKS 137
Query: 65 EHDCKLASRKFAKILKQL-GHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ D +K KI+K + I+ + FKI NI+ + + PV+L+ L H H ++ +YEP
Sbjct: 138 KTDSIKGCKKIGKIIKIVTNQNIRLKNFKIENIIASANCNIPVRLEMLAHDHKEYCNYEP 197
Query: 124 ELFPGLIYRMVKP----RVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
ELF GL+YR KP + V+LIFV+G+I+ITG KS +L+ F +IY VL +K
Sbjct: 198 ELFAGLVYRY-KPASNLKSVILIFVSGKIIITGCKSLQKLNTVFQDIYNVLVQYK 251
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 72 SRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIY 131
KF+ I +L H K KIHNI+ + ++ + L L V + + Y P LI
Sbjct: 57 DNKFSNIKNKLIH--KDIPLKIHNIISSANLDAEINL-RLVAVSIKSAEYNPSKINTLII 113
Query: 132 RMVKPRVVLLIFVNGRIVITGAKSRSE 158
R+ P+ LIF +GRI++TG KS+++
Sbjct: 114 RINNPKCTALIFKSGRIMLTGTKSKTD 140
>gi|392522767|gb|AFM78172.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 80/113 (70%), Gaps = 1/113 (0%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFK 92
+F + M++ PR T L F SGK+ G K H+ LAS+KFA I++++G + FK
Sbjct: 2 RFAAVTMRLREPRATALIFASGKMCATGTKSTHNASLASKKFALIIEKVGFKTAPEVDFK 61
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
+ NIV T DV FP++L+ L + HS F+SYEPELFPGLIYR+V+PRVV+LIFV+
Sbjct: 62 VQNIVGTADVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
QN+VGT VG P+ L + + ++ Y P F GLI +++ PR L F S
Sbjct: 63 QNIVGTADVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
>gi|24638240|sp|Q971V3.2|TBP_SULTO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
Length = 198
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 102/168 (60%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V T+++ LDL + V EY+P +F GLI ++ P+ T L F+SGK+++
Sbjct: 13 VNIENIVATVTLDQNLDLYAMERSVPNVEYDPDQFPGLIFRLEAPKVTSLIFKSGKMVVT 72
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK + A ++ K LK+ G + + +I NIV + ++ V LD + +
Sbjct: 73 GAKSTDELIKAVKRIIKTLKRYGMNLTGKPKIQIQNIVASANLHVIVNLDKAAFLLEN-N 131
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIY 167
YEPE FPGLIYRM PRVVLLIF +G++VITGAK E+H+A I+
Sbjct: 132 MYEPEQFPGLIYRMEDPRVVLLIFSSGKMVITGAKREEEVHKAVKKIF 179
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
I NIV T + + L A+ Y+P+ FPGLI+R+ P+V LIF +G++V+TG
Sbjct: 15 IENIVATVTLDQNLDLYAMERSVPNVE-YDPDQFPGLIFRLEAPKVTSLIFKSGKMVVTG 73
Query: 153 AKSRSELHEAFDNIYPVLKSF 173
AKS EL +A I LK +
Sbjct: 74 AKSTDELIKAVKRIIKTLKRY 94
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ ++L++ + + Y P +F GLI ++ +PR L F SGK++I
Sbjct: 104 IQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMEDPRVVLLIFSSGKMVIT 163
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GAK E + A +K L +L
Sbjct: 164 GAKREEEVHKAVKKIFDKLVEL 185
>gi|305663395|ref|YP_003859683.1| TATA binding protein of transcription factor TFIID [Ignisphaera
aggregans DSM 17230]
gi|304377964|gb|ADM27803.1| TATA binding protein of transcription factor TFIID [Ignisphaera
aggregans DSM 17230]
Length = 218
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 105/171 (61%), Gaps = 2/171 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+SV +DL+ ++ + EY+P +F GL+ ++ +P+ T L F+SG++++ GAK
Sbjct: 13 ENIVATVSVDQTIDLDYLDKVLPNVEYDPDQFPGLVFRLESPKVTALIFRSGRMVVTGAK 72
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
D A ++ + L + PI + +I NIV + ++ + L+ + + + YE
Sbjct: 73 STADLIKAVKRIVRTLLKYDIPITSKPRIQIQNIVASANLGSEIMLEKVAFLLEN-TMYE 131
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
PE FPGLIYRM P VVLL+F +G++VITGAKS E+ +A N+Y LK
Sbjct: 132 PEQFPGLIYRMTDPHVVLLVFSSGKMVITGAKSEEEVFQAVRNLYLKLKEL 182
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 81 QLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVL 140
LG+P KI NIV T V + LD L V Y+P+ FPGL++R+ P+V
Sbjct: 2 DLGNP--NISVKIENIVATVSVDQTIDLDYLDKVLPNVE-YDPDQFPGLVFRLESPKVTA 58
Query: 141 LIFVNGRIVITGAKSRSELHEAFDNIYPVL 170
LIF +GR+V+TGAKS ++L +A I L
Sbjct: 59 LIFRSGRMVVTGAKSTADLIKAVKRIVRTL 88
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++G + L ++ + + Y P +F GLI ++ +P L F SGK++I
Sbjct: 101 IQIQNIVASANLGSEIMLEKVAFLLENTMYEPEQFPGLIYRMTDPHVVLLVFSSGKMVIT 160
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK E + A R LK+LG
Sbjct: 161 GAKSEEEVFQAVRNLYLKLKELG 183
>gi|392522733|gb|AFM78155.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 92
+F +IM++ PR T L F SGK +I G K H+ LA++K A IL+++G P + FK
Sbjct: 2 RFAAVIMRLREPRATALVFASGKTVITGTKSSHNASLATKKIAYILERVGFQPESHIHFK 61
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
+ NIV T DV FP++L+ + H FSSYEPELFPGLIYR+V+PRV LLIFV+
Sbjct: 62 VQNIVGTVDVGFPIRLEGVAFAHPTFSSYEPELFPGLIYRLVQPRVSLLIFVS 114
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
QN+VGT+ VG P+ L + + +S Y P F GLI +++ PR + L F S
Sbjct: 63 QNIVGTVDVGFPIRLEGVAFAHPTFSSYEPELFPGLIYRLVQPRVSLLIFVS 114
>gi|281344600|gb|EFB20184.1| hypothetical protein PANDA_019435 [Ailuropoda melanoleuca]
Length = 89
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 73/88 (82%)
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
E +LA+RK+A+++++LG P ++ FKI N+V +CDVRF ++L+ L H QFSSYEPE
Sbjct: 2 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFAIRLEGLVLTHQQFSSYEPE 61
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITG 152
LFPGLIYRMVKPR+VLLIFV+G++V+TG
Sbjct: 62 LFPGLIYRMVKPRIVLLIFVSGKVVLTG 89
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QNMVG+ V + L + + ++S Y P F GLI +++ PR L F SGK+++ G
Sbjct: 31 QNMVGSCDVRFAIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTG 89
>gi|347523992|ref|YP_004781562.1| TATA-box binding family protein [Pyrolobus fumarii 1A]
gi|343460874|gb|AEM39310.1| TATA-box binding family protein [Pyrolobus fumarii 1A]
Length = 207
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 102/176 (57%), Gaps = 10/176 (5%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+++ LDL I + + EYNP +F GL+ ++ P+ T L F+SGK+++ GAK
Sbjct: 29 ENIVATVTLDQNLDLYAIETSIPNVEYNPEQFPGLVFRLEEPKVTALIFKSGKMVVTGAK 88
Query: 64 HEHDCKLASRKFAKILKQ-----LGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 118
A +K + LK+ +G P +I NIV + ++ V L+ + +
Sbjct: 89 STQQLIEAVKKIIRELKRHGIVIVGRP----KVQIQNIVASANLNVCVDLEK-AALTLEN 143
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
S YEPE FPGLIYRM PRVVLLIF +G++VITGAK E+ EA NI L +
Sbjct: 144 SMYEPEQFPGLIYRMQNPRVVLLIFSSGKMVITGAKREEEVKEAVYNIRDTLAKMR 199
>gi|298712244|emb|CBJ26695.1| transcription initiation factor TFIID [Ectocarpus siliculosus]
Length = 214
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 108/177 (61%), Gaps = 6/177 (3%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+ T+++ +D + + +++R++EYNP K ++M+I P+ T L F SGK++I GA
Sbjct: 36 QNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGAA 95
Query: 64 HEHDCKLASRKFAKILKQLG-----HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 118
+ A+++F +++ +G +P + + F + N+V T +V P+ L+ + + +++
Sbjct: 96 GVEAAREAAQRFVAVVEGVGLNPTTNPNQLR-FAVQNMVATFEVDAPISLELMAYCQARW 154
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPELFPGLIY+ VV +F +GR+V+TG K L+EA + P+L +++
Sbjct: 155 CMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGGKQEDHLNEALVRLLPILNQYRQ 211
Score = 43.1 bits (100), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QNMV T V P+ L + + R+ Y P F GLI + + F SG++++ G
Sbjct: 130 QNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTGG 189
Query: 63 KHEHDCKLASRKFAKILKQLGHP 85
K E A + IL Q P
Sbjct: 190 KQEDHLNEALVRLLPILNQYRQP 212
>gi|294939320|ref|XP_002782411.1| TATA-box factor binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894017|gb|EER14206.1| TATA-box factor binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 255
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 110/175 (62%), Gaps = 3/175 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNP-RTTCLAFQSGKLLILGA 62
N++ + +G +D I +R EYNP K + +++ +P + TC +++GK++I GA
Sbjct: 81 DNVIASFELGIDIDPKTIAFNLRNCEYNPRKHNCAVIRFTSPTKATCHIYRNGKVMINGA 140
Query: 63 KHEHDCKLASRKFAKILKQLGH--PIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
K +K K+++++ H IK+ FK+ N++ + DVRFP++L+ L + HS +++
Sbjct: 141 YTIELAKKIGKKIVKLVRRITHNPSIKFINFKVENMIASVDVRFPIRLERLAYDHSAYAT 200
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPEL GL +R+ P++V++I+V+G+I G K+ ++ +AF +IYP+L +K
Sbjct: 201 YEPELSSGLYFRLFDPKLVIMIYVSGKISFIGGKTLDDISKAFCSIYPLLTQYKD 255
>gi|159041771|ref|YP_001541023.1| transcription factor [Caldivirga maquilingensis IC-167]
gi|157920606|gb|ABW02033.1| 2-alkenal reductase [Caldivirga maquilingensis IC-167]
Length = 194
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 102/171 (59%), Gaps = 2/171 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+++G LDL ++ + +EYNP +F GLI++ P+ + L F++GK++ GAK
Sbjct: 10 ENIVATVNLGVDLDLERLAEVLPAAEYNPDQFPGLILRFQRPKISALIFRTGKMVCTGAK 69
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E + K A + K L Q G I+ ++ NIV + ++ V ++ + S YE
Sbjct: 70 SEDELKRAVKYLVKTLNQRGAQIQNDSDIQVQNIVASGNLHAEVNIEKAALLLEN-SMYE 128
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
PE FPGLIYRM P+VV+L+F +G+IV TGAK +++ A +Y LK
Sbjct: 129 PEQFPGLIYRMSDPKVVILVFSSGKIVCTGAKKEADVAVAVRKLYDKLKEI 179
>gi|392522763|gb|AFM78170.1| TATA box-binding protein, partial [uncultured diatom]
Length = 113
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 78/112 (69%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKI 93
+F +IM++ PR T L F SGK+ + G K H+ LA+++FA I++++G FK+
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSTHNSSLAAKRFAYIIEKVGFKSTGLDFKV 61
Query: 94 HNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
NIV T DV FPV+L+ L + HS +SSYEPELFPGLIYR+ PRVV LIFV+
Sbjct: 62 QNIVGTVDVGFPVRLEGLVYAHSMYSSYEPELFPGLIYRLGIPRVVFLIFVS 113
Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
QN+VGT+ VG P+ L + + YS Y P F GLI ++ PR L F S
Sbjct: 62 QNIVGTVDVGFPVRLEGLVYAHSMYSSYEPELFPGLIYRLGIPRVVFLIFVS 113
>gi|14424468|sp|Q55031.2|TBP_SULSH RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
Length = 198
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 102/170 (60%), Gaps = 6/170 (3%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V T+++ LDL + + EY+P +F GLI ++ P+ T L F+SGK+++
Sbjct: 12 VNIENIVATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVVT 71
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQ 117
GAK + A ++ K LK+ G IK G +I NIV + ++ V LD +
Sbjct: 72 GAKSTEELIKAVKRIIKTLKKYG--IKIMGKPKIQIQNIVASANLHVNVNLDKAAFLLEN 129
Query: 118 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIY 167
+ YEPE FPGLI+RM PRVVLLIF +G++VITGAK E+ +A I+
Sbjct: 130 -NMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVITGAKREDEVSKAVKRIF 178
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
I NIV T + + L A+ Y+P+ FPGLI+R+ +P+V LIF +G++V+TG
Sbjct: 14 IENIVATVTLEQSLDLYAMERSIPNIE-YDPDQFPGLIFRLEQPKVTALIFKSGKMVVTG 72
Query: 153 AKSRSELHEAFDNIYPVLKSF 173
AKS EL +A I LK +
Sbjct: 73 AKSTEELIKAVKRIIKTLKKY 93
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ ++L++ + + Y P +F GLI ++ +PR L F SGK++I
Sbjct: 103 IQIQNIVASANLHVNVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVIT 162
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GAK E + A ++ L +L
Sbjct: 163 GAKREDEVSKAVKRIFDKLAEL 184
>gi|886020|gb|AAC43403.1| TATA-binding protein homolog; Method: conceptual translation
supplied by author, partial [Sulfolobus shibatae]
Length = 198
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 102/170 (60%), Gaps = 6/170 (3%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V T+++ LDL + + EY+P +F GLI ++ P+ T L F+SGK+++
Sbjct: 12 VNIENIVATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVVT 71
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQ 117
GAK + A ++ K LK+ G IK G +I NIV + ++ V LD +
Sbjct: 72 GAKSTEELIKAVKRIIKTLKKYG--IKIMGKPKIQIQNIVASANLHVNVNLDKAAFLLEN 129
Query: 118 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIY 167
+ YEPE FPGLI+RM PRVVLLIF +G++VITGAK E+ +A I+
Sbjct: 130 -NMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVITGAKREDEVSKAVKRIF 178
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
I NIV T + + L A+ Y+P+ FPGLI+R+ +P+V LIF +G++V+TG
Sbjct: 14 IENIVATVTLEQSLDLYAMERSIPNIE-YDPDQFPGLIFRLEQPKVTALIFKSGKMVVTG 72
Query: 153 AKSRSELHEAFDNIYPVLKSF 173
AKS EL +A I LK +
Sbjct: 73 AKSTEELIKAVKRIIKTLKKY 93
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ ++L++ + + Y P +F GLI ++ +PR L F SGK++I
Sbjct: 103 IQIQNIVASANLHVNVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVIT 162
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GAK E + A ++ L +L
Sbjct: 163 GAKREDEVSKAVKRIFDKLAEL 184
>gi|301103642|ref|XP_002900907.1| TATA-box-binding protein, putative [Phytophthora infestans T30-4]
gi|262101662|gb|EEY59714.1| TATA-box-binding protein, putative [Phytophthora infestans T30-4]
Length = 163
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 97/145 (66%), Gaps = 2/145 (1%)
Query: 26 RYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 85
R +E P K + ++MK+ NP+ T + F +GKL+ GA+ E K A+R+F ++++++ P
Sbjct: 14 RRAELVPKK-NCILMKLHNPKATAMLFANGKLVCTGAETEDAIKNAARRFTQVIQKMDFP 72
Query: 86 -IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFV 144
+ FKI N+V TCD+ F V ++AL HS +YEPEL+P LIYR+ KP+V +L+FV
Sbjct: 73 GVNLIDFKIQNVVGTCDMGFRVLVEALAFAHSDRCTYEPELYPALIYRLEKPQVKVLVFV 132
Query: 145 NGRIVITGAKSRSELHEAFDNIYPV 169
+G++V T +K EL+ A + I+PV
Sbjct: 133 SGKVVFTDSKEPRELYSACEAIFPV 157
>gi|392522761|gb|AFM78169.1| TATA box-binding protein, partial [uncultured diatom]
Length = 113
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 78/112 (69%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKI 93
+F +IM++ PR T L F SGK+ + G K H+ LA+++FA I++++G FK+
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSTHNSSLAAKRFAYIIEKVGFKSTGLDFKV 61
Query: 94 HNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
N+V T DV FPV+L+ L + HS +SSYEPELFPGLIYR+ PRVV LIFV+
Sbjct: 62 QNMVGTVDVGFPVRLEGLVYAHSMYSSYEPELFPGLIYRLGIPRVVFLIFVS 113
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
QNMVGT+ VG P+ L + + YS Y P F GLI ++ PR L F S
Sbjct: 62 QNMVGTVDVGFPVRLEGLVYAHSMYSSYEPELFPGLIYRLGIPRVVFLIFVS 113
>gi|351694348|gb|EHA97266.1| TATA box-binding protein-like protein 2 [Heterocephalus glaber]
Length = 354
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 80/117 (68%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I + +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 209 QLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 268
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 118
AK E +LA+RK+A+++++LG P K+ FKI N+V +CDVRF ++L+ L H QF
Sbjct: 269 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFSIRLEGLVLTHQQF 325
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 92 KIHNIVCTCDVRFPVKLDALH-HVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
++ NIV T V KLD +H++ + Y P+ F +I R+ +PR LIF +G++V
Sbjct: 209 QLQNIVST--VNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 266
Query: 151 TGAKSRSE 158
TGAKS +
Sbjct: 267 TGAKSEEQ 274
>gi|14423939|sp|P58178.1|TBP_SULSO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
Length = 198
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 102/170 (60%), Gaps = 6/170 (3%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V T+++ LDL + + EY+P +F GLI ++ P+ T L F+SGK+++
Sbjct: 12 VNIENIVATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVVT 71
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQ 117
GAK + A ++ K LK+ G IK G +I NIV + ++ V LD +
Sbjct: 72 GAKSTEELIKAVKRIIKTLKKYG--IKIVGKPKIQIQNIVASANLHVNVNLDKAAFLLEN 129
Query: 118 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIY 167
+ YEPE FPGLI+RM PRVVLLIF +G++VITGAK E+ +A I+
Sbjct: 130 -NMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVITGAKREDEVSKAVKRIF 178
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
I NIV T + + L A+ Y+P+ FPGLI+R+ +P+V LIF +G++V+TG
Sbjct: 14 IENIVATVTLEQSLDLYAMERSIPNIE-YDPDQFPGLIFRLEQPKVTALIFKSGKMVVTG 72
Query: 153 AKSRSELHEAFDNIYPVLKSF 173
AKS EL +A I LK +
Sbjct: 73 AKSTEELIKAVKRIIKTLKKY 93
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ ++L++ + + Y P +F GLI ++ +PR L F SGK++I
Sbjct: 103 IQIQNIVASANLHVNVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVIT 162
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GAK E + A ++ L +L
Sbjct: 163 GAKREDEVSKAVKRIFDKLAEL 184
>gi|320100857|ref|YP_004176449.1| TATA-binding protein of transcription factor TFIID [Desulfurococcus
mucosus DSM 2162]
gi|319753209|gb|ADV64967.1| TATA binding protein of transcription factor TFIID [Desulfurococcus
mucosus DSM 2162]
Length = 193
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+ + LDL I +R+ Y P +F GLI ++ PR T L F+SGK+++ G K
Sbjct: 14 ENIVATVILEHDLDLELIETRIPSITYKPDQFPGLIFRLDKPRATALVFKSGKMVVTGTK 73
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
A +K K+ + G ++ + +I NIV D+ V L+ + H + S YE
Sbjct: 74 STQQLVEAVKKIIKVFMKSGVDVRGRPRVQIQNIVAGGDIHAYVNLEKAAY-HLEDSMYE 132
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
PE FPGLI+RM PRVVLLIF +G++VITGAK SE+ A NI
Sbjct: 133 PEQFPGLIHRMRDPRVVLLIFSSGKMVITGAKEESEVERAVVNI 176
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 83 GHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLI 142
G P +++ NIV T + + L+ L +Y+P+ FPGLI+R+ KPR L+
Sbjct: 3 GEPPFKTSYRVENIVATVILEHDLDLE-LIETRIPSITYKPDQFPGLIFRLDKPRATALV 61
Query: 143 FVNGRIVITGAKSRSELHEAFDNIYPVL 170
F +G++V+TG KS +L EA I V
Sbjct: 62 FKSGKMVVTGTKSTQQLVEAVKKIIKVF 89
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++L + + S Y P +F GLI ++ +PR L F SGK++I
Sbjct: 102 VQIQNIVAGGDIHAYVNLEKAAYHLEDSMYEPEQFPGLIHRMRDPRVVLLIFSSGKMVIT 161
Query: 61 GAKHEHDCKLASRKFAKIL 79
GAK E + + A A+ L
Sbjct: 162 GAKEESEVERAVVNIARQL 180
>gi|195035138|ref|XP_001989048.1| GH10255 [Drosophila grimshawi]
gi|193905048|gb|EDW03915.1| GH10255 [Drosophila grimshawi]
Length = 314
Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 100/173 (57%), Gaps = 8/173 (4%)
Query: 5 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
N+V + SV C L+L I S V Y N L M++ P TT + SG++ G
Sbjct: 28 NVVCSFSVRCHLNLQNIALKGSNVEYRREN----GMLTMRLRRPYTTASIWSSGRITCTG 83
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
A E K+A+R++A+IL+ LG P+++Q F++ N++ TC + +P+K+ + + +SY
Sbjct: 84 AISEMQAKVAARRYARILEHLGFPVRFQSFRVVNVLATCCMPWPIKIVNFSMHNREMASY 143
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
EPEL+PG+ YRM P+ L IF G I +T A S + + A IYP++ F+
Sbjct: 144 EPELYPGVTYRMRNPKATLRIFSTGNITVTAA-SVNAVETAVQRIYPLVNEFR 195
>gi|348686462|gb|EGZ26277.1| hypothetical protein PHYSODRAFT_484921 [Phytophthora sojae]
Length = 161
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 96/145 (66%), Gaps = 2/145 (1%)
Query: 26 RYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP 85
R +E P K + ++MK+ NP+ T + F +GKL+ GA+ E K +R+F ++++++ P
Sbjct: 14 RRAELVPKK-NCILMKLHNPKATAMLFANGKLVCTGAETEEAIKNVARRFTQVIQKMDFP 72
Query: 86 -IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFV 144
+ FKI N+V TCD+ F V ++A+ HS +YEPEL+P LIYR+ KP+V +L+FV
Sbjct: 73 GVNLIDFKIQNVVGTCDLGFRVLVEAIAFAHSDCCTYEPELYPALIYRLDKPQVKVLVFV 132
Query: 145 NGRIVITGAKSRSELHEAFDNIYPV 169
+G++V T +K EL+ A + IYPV
Sbjct: 133 SGKVVFTDSKEPRELYAACEAIYPV 157
>gi|392522755|gb|AFM78166.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 92
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G P FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
+ N+V T DV FP++L+ L + HS F+SYEPELFPGLIYR+ +P+VV L+FV+
Sbjct: 62 VQNMVGTLDVGFPIRLEGLAYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
QNMVGT+ VG P+ L + + ++ Y P F GLI ++ P+ L F S
Sbjct: 63 QNMVGTLDVGFPIRLEGLAYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|288931352|ref|YP_003435412.1| TATA-box binding family protein [Ferroglobus placidus DSM 10642]
gi|288893600|gb|ADC65137.1| TATA-box binding family protein [Ferroglobus placidus DSM 10642]
Length = 183
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 103/175 (58%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + +G +DLN+I ++ +EY P +F GL+++ +P+ L F+SGK++
Sbjct: 6 IKIENVVASTQIGENIDLNKIAREIKDAEYKPKQFPGLVLRTKDPKAAALVFRSGKVVCT 65
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
G+K D + A ++ I+K LG + ++ NIV + D+ + L+A+ + +
Sbjct: 66 GSKSVEDARRAVKQVVNIIKSLGIEVYDDPDVRVQNIVASADLGVDLNLNAIAVGLGLEN 125
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ PRVV+LIF +G++VITG K + A + I L++
Sbjct: 126 IEYEPEQFPGLVYRLRDPRVVVLIFGSGKMVITGGKKPEDAKRAVEKISEELQAL 180
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ +PR L F SGK++
Sbjct: 97 VRVQNIVASADLGVDLNLNAIAVGLGLENIEYEPEQFPGLVYRLRDPRVVVLIFGSGKMV 156
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G K D K A K ++ L+ LG
Sbjct: 157 ITGGKKPEDAKRAVEKISEELQALG 181
>gi|284161184|ref|YP_003399807.1| TATA-box binding family protein [Archaeoglobus profundus DSM 5631]
gi|284011181|gb|ADB57134.1| TATA-box binding family protein [Archaeoglobus profundus DSM 5631]
Length = 184
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 103/175 (58%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + +G +DLN+I + ++Y P +F GL+++ P+ L F+SGK++
Sbjct: 7 IKIENVVASTQIGENIDLNKIAREIPDADYKPKQFPGLVLRTKEPKAAALIFRSGKVVCT 66
Query: 61 GAKHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
G+K D + ++ KI+ LG P I+ K+ NIV + D+ + L+A+ + +
Sbjct: 67 GSKSVEDARRVVKQIVKIVGSLGIPVIEEPEVKVQNIVASADLGTDLNLNAIAIGLGLEN 126
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ PRVV+LIF +G++V+TG K+ + A + I L+S
Sbjct: 127 VEYEPEQFPGLVYRLRDPRVVVLIFGSGKMVVTGGKTPDDARRAVEKIAEELESL 181
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ +PR L F SGK++
Sbjct: 98 VKVQNIVASADLGTDLNLNAIAIGLGLENVEYEPEQFPGLVYRLRDPRVVVLIFGSGKMV 157
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
+ G K D + A K A+ L+ LG
Sbjct: 158 VTGGKTPDDARRAVEKIAEELESLG 182
>gi|14423942|sp|Q9P9I9.1|TBP_METTL RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor;
AltName: Full=aTBP
gi|6723836|emb|CAB66385.1| archaeal transcription factor TBP [Methanothermococcus
thermolithotrophicus]
Length = 181
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 98/173 (56%), Gaps = 3/173 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + +G +DL + +EY P +F GL+ ++ +P+ L F+SGKL GAK
Sbjct: 9 NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTGAKS 68
Query: 65 EHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ D ++A +K K LK G I + N+V T D+ LD + + + YEP
Sbjct: 69 KEDAEIAIKKIIKELKDAGMDIIDNPEVNVQNMVATADLGIEPNLDDISTLEG--TEYEP 126
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
E FPGL+YR+ P+VV+LIF +G++VITG K + + + A D I LK +++
Sbjct: 127 EQFPGLVYRLSDPKVVVLIFGSGKVVITGLKKKDDAYLALDKILSTLKELEEE 179
>gi|392522747|gb|AFM78162.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 78/113 (69%), Gaps = 1/113 (0%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 92
+F +IM++ PR T L F SGK+ + G K H LAS+KFA I+ ++G P FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHSSTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
+ N+V T DV FP++L+ L + HS F+SYEPELFPGLIYR+ +P+VV L+FV+
Sbjct: 62 VQNMVGTLDVSFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 38.9 bits (89), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
QNMVGT+ V P+ L + + ++ Y P F GLI ++ P+ L F S
Sbjct: 63 QNMVGTLDVSFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|156937779|ref|YP_001435575.1| TATA binding protein of transcription factor TFIID [Ignicoccus
hospitalis KIN4/I]
gi|156566763|gb|ABU82168.1| TATA binding protein of transcription factor TFIID [Ignicoccus
hospitalis KIN4/I]
Length = 207
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 104/179 (58%), Gaps = 12/179 (6%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYS-EYNPGKFHGLIMKILNPRTTCLAFQSGKLLI 59
+ +N+V T+S+ +DL +I + EY+P +F GLI ++ PR T L F+SGK+++
Sbjct: 11 IKIENIVATVSIDQNIDLEKIEKEFDSNVEYDPDQFPGLIFRLEEPRVTALIFKSGKMVV 70
Query: 60 LGAKHEHDCKLASRKFAKILKQLG------HPIKYQGFKIHNIVCTCDVRFPVKLDALHH 113
GAK + A +K ILK G P +I NIV + ++ V L+ +
Sbjct: 71 TGAKSTQELITAVKKIFYILKSKGIVSGKVRP----RIQIQNIVASANLGVEVHLEKAAY 126
Query: 114 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
+ S YEPE FPGLIYR+ +PRVVLL+F +G++V+TGAK E+ +A + ++ LK
Sbjct: 127 LLEN-SMYEPEQFPGLIYRLDEPRVVLLLFSSGKMVVTGAKKEEEVSKAVEKVFQNLKE 184
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++G + L + + S Y P +F GLI ++ PR L F SGK+++
Sbjct: 104 IQIQNIVASANLGVEVHLEKAAYLLENSMYEPEQFPGLIYRLDEPRVVLLLFSSGKMVVT 163
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK E + A K + LK+ G
Sbjct: 164 GAKKEEEVSKAVEKVFQNLKEKG 186
>gi|392522759|gb|AFM78168.1| TATA box-binding protein, partial [uncultured diatom]
Length = 113
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 77/112 (68%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKI 93
+F +IM++ PR L F SGK+ + G K H+ LA+++FA I++++G FK+
Sbjct: 2 RFAAVIMRLREPRAAALIFASGKMCVTGTKSTHNSSLAAKRFAYIIEKVGFKSTGLDFKV 61
Query: 94 HNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
N+V T DV FPV+L+ L + HS +SSYEPELFPGLIYR+ PRVV LIFV+
Sbjct: 62 QNMVGTVDVGFPVRLEGLVYAHSMYSSYEPELFPGLIYRLGIPRVVFLIFVS 113
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
QNMVGT+ VG P+ L + + YS Y P F GLI ++ PR L F S
Sbjct: 62 QNMVGTVDVGFPVRLEGLVYAHSMYSSYEPELFPGLIYRLGIPRVVFLIFVS 113
>gi|116202165|ref|XP_001226894.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88177485|gb|EAQ84953.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 84
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 70/81 (86%)
Query: 95 NIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAK 154
NIV +CD++FP++L+ L H FSSYEPELFPGLIYRM+KP++VLLIFV+G+IV+TGAK
Sbjct: 3 NIVGSCDIKFPIRLEGLASKHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAK 62
Query: 155 SRSELHEAFDNIYPVLKSFKK 175
R E+++AF+ IYPVL+ F+K
Sbjct: 63 VREEIYQAFEMIYPVLQDFRK 83
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRV-RYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
N+VG+ + P+ L + S+ +S Y P F GLI +++ P+ L F SGK+++ GAK
Sbjct: 3 NIVGSCDIKFPIRLEGLASKHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAK 62
Query: 64 HEHDCKLASRKFAKILKQL 82
+ A +L+
Sbjct: 63 VREEIYQAFEMIYPVLQDF 81
>gi|392522739|gb|AFM78158.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 92
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G P FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
+ N+V T DV FP++L+ L + HS F+SYEPELFPGLIYR+ +P+VV L+FV+
Sbjct: 62 VQNMVGTLDVGFPIRLEGLVYAHSTFTSYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
QNMVGT+ VG P+ L + + ++ Y P F GLI ++ P+ L F S
Sbjct: 63 QNMVGTLDVGFPIRLEGLVYAHSTFTSYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|417904|sp|P32086.1|TBP_PLAFA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|5911375|gb|AAD55768.1|AF177280_1 TATA-binding protein [Plasmodium falciparum]
gi|160700|gb|AAA29769.1| TATA-binding protein [Plasmodium falciparum]
gi|38194140|gb|AAR13208.1| TATA-binding protein [synthetic construct]
Length = 228
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 112/182 (61%), Gaps = 12/182 (6%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ N++ + ++ ++L + +R +EYNP K + LI+++ P+ T L F++G++++
Sbjct: 50 LNIHNIISSANLCIDINLRLVAVSIRNAEYNPSKINTLIIRLNKPQCTALIFKNGRIMLT 109
Query: 61 GAKHEHD----CKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 116
G + + D CK ++ + K +K+ FKI NI+ + + P++L+ L H H
Sbjct: 110 GTRTKKDSIMGCKKIAKIIKIVTKD---KVKFCNFKIENIIASANCNIPIRLEVLAHDHK 166
Query: 117 QFSSYEPELFPGLIYRMVKP----RVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
++ +YEPELF GL+YR KP + V+LIFV+G+I+ITG KS ++L+ F +IY VL
Sbjct: 167 EYCNYEPELFAGLVYRY-KPTSNLKSVILIFVSGKIIITGCKSVNKLYTVFQDIYNVLIQ 225
Query: 173 FK 174
+K
Sbjct: 226 YK 227
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 90 GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIV 149
IHNI+ + ++ + L L V + + Y P LI R+ KP+ LIF NGRI+
Sbjct: 49 SLNIHNIISSANLCIDINL-RLVAVSIRNAEYNPSKINTLIIRLNKPQCTALIFKNGRIM 107
Query: 150 ITGAKSRSE 158
+TG +++ +
Sbjct: 108 LTGTRTKKD 116
>gi|392522735|gb|AFM78156.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522757|gb|AFM78167.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 92
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G P FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
+ N+V T DV FP++L+ L + HS F+SYEPELFPGLIYR+ +P+VV L+FV+
Sbjct: 62 VQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
QNMVGT+ VG P+ L + + ++ Y P F GLI ++ P+ L F S
Sbjct: 63 QNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|195393646|ref|XP_002055464.1| GJ19385 [Drosophila virilis]
gi|194149974|gb|EDW65665.1| GJ19385 [Drosophila virilis]
Length = 711
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 65/176 (36%), Positives = 101/176 (57%), Gaps = 10/176 (5%)
Query: 5 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 60
N+V + SV C L L +I S V Y N G++ MK+ P TT + SG++
Sbjct: 284 NVVCSFSVRCHLKLREIALNGSNVEYRREN-----GMVTMKLRRPYTTASIWSSGRITCT 338
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GA E K+A+R++A+ L +LG P +Q F+I N++ TC + + +K+ H +S
Sbjct: 339 GATSESQAKIAARRYARCLSKLGFPTHFQNFRIVNVLGTCSMPWAIKIVNFSERHRDNAS 398
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YEPEL PG+ Y+M +P+ L IF G I +T A S +++ A +IYP++ F+KQ
Sbjct: 399 YEPELHPGVTYKMREPKATLKIFSTGSITVTAA-SVNDVESAIQHIYPLVHEFRKQ 453
>gi|195134909|ref|XP_002011879.1| GI14331 [Drosophila mojavensis]
gi|193909133|gb|EDW08000.1| GI14331 [Drosophila mojavensis]
Length = 656
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 65/176 (36%), Positives = 101/176 (57%), Gaps = 10/176 (5%)
Query: 5 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 60
N+V + SV C L L +I S V Y N G++ MK+ P TT + SG++
Sbjct: 267 NVVCSFSVRCHLKLREIALNGSNVEYRREN-----GMVTMKLRRPYTTASIWSSGRITCT 321
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GA E K+A+R++A+ L +LG P +Q F+I N++ TC + + +K+ H +S
Sbjct: 322 GATSESQAKIAARRYARCLSKLGFPTHFQNFRIVNVLGTCSMPWAIKIVNFSERHRDNAS 381
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YEPEL PG+ Y+M +P+ L IF G I +T A S +++ A +IYP++ F+KQ
Sbjct: 382 YEPELHPGVTYKMREPKATLKIFSTGSITVTAA-SVNDVESAIQHIYPLVHEFRKQ 436
>gi|8777983|gb|AAF79168.1| TATA-box binding protein 1 [Habrotrocha constricta]
Length = 108
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 78/107 (72%)
Query: 12 VGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 71
+GCPLDL +I + R +EYNP +F +IM+I NPRTT L F SGK++ GAK E D A
Sbjct: 1 LGCPLDLKRIALQARNAEYNPKRFAAVIMRIRNPRTTALIFGSGKMVCTGAKSEEDSLQA 60
Query: 72 SRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 118
+R++A+++++LG P K++ FKI N+V + DV+FP++L+AL H QF
Sbjct: 61 ARRYARVIQKLGFPAKFRDFKIQNMVGSVDVKFPIRLEALVLKHYQF 107
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 114 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
+ ++ + Y P+ F +I R+ PR LIF +G++V TGAKS + +A
Sbjct: 12 LQARNAEYNPKRFAAVIMRIRNPRTTALIFGSGKMVCTGAKSEEDSLQA 60
>gi|392522741|gb|AFM78159.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 92
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G P FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
+ N+V T DV FP++L+ L + HS F+SYEPELFPGLIYR+ +P+VV L+FV+
Sbjct: 62 VQNMVGTLDVGFPIRLERLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
QNMVGT+ VG P+ L + + + ++ Y P F GLI ++ P+ L F S
Sbjct: 63 QNMVGTLDVGFPIRLERLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|123395858|ref|XP_001300812.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121881909|gb|EAX87882.1| hypothetical protein TVAG_285070 [Trichomonas vaginalis G3]
Length = 233
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 100/175 (57%), Gaps = 4/175 (2%)
Query: 5 NMVGTISVGC-PLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
N++ C L+L I S +R +EY P + ++++I +P+ T L F +GK+ I+G +
Sbjct: 53 NVIALAQYSCNKLNLVSIASTIRNAEYKPKRIKAVVIRIRDPKATGLVFSNGKINIVGCR 112
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV--HSQFSSY 121
D K A+ KF K+L+Q+G+ +K I +IV T F + + + H F Y
Sbjct: 113 SVEDAKRAAHKFRKMLQQIGYDVKLVNITISSIVATIHTPFNIAIAQIASADGHKLFCQY 172
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
PE F GLIYR+ P+ +LIF +G IV+T AKS +L + IYPVL+ F+K+
Sbjct: 173 RPEKFAGLIYRLTDPQCTMLIFQSGSIVLT-AKSEDDLTAGSNWIYPVLQKFEKK 226
>gi|392522745|gb|AFM78161.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 78/113 (69%), Gaps = 1/113 (0%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 92
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G P FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
+ N+V T DV FP++L+ L + HS F+SYEPELFPGLIYR+ +P VV L+FV+
Sbjct: 62 VQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPMVVFLVFVS 114
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
QNMVGT+ VG P+ L + + ++ Y P F GLI ++ P L F S
Sbjct: 63 QNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPMVVFLVFVS 114
>gi|392522743|gb|AFM78160.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 78/113 (69%), Gaps = 1/113 (0%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 92
+F +IM++ PR T L F SGK+ + G K H LAS+KFA I+ ++G P FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHSPTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
+ N+V T DV FP++L+ L + HS F+SYEPELFPGLIYR+ +P+VV L+FV+
Sbjct: 62 VQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
QNMVGT+ VG P+ L + + ++ Y P F GLI ++ P+ L F S
Sbjct: 63 QNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|148642780|ref|YP_001273293.1| transcription factor [Methanobrevibacter smithii ATCC 35061]
gi|222445725|ref|ZP_03608240.1| hypothetical protein METSMIALI_01367 [Methanobrevibacter smithii
DSM 2375]
gi|261349727|ref|ZP_05975144.1| TATA-box-binding protein [Methanobrevibacter smithii DSM 2374]
gi|166227821|sp|A5UL47.1|TBP_METS3 RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|148551797|gb|ABQ86925.1| transcription initiation factor TFIID TATA binding protein
[Methanobrevibacter smithii ATCC 35061]
gi|222435290|gb|EEE42455.1| transcription factor [Methanobrevibacter smithii DSM 2375]
gi|288861682|gb|EFC93980.1| TATA-box-binding protein [Methanobrevibacter smithii DSM 2374]
Length = 181
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 103/174 (59%), Gaps = 2/174 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + S+G + L +++ + +N +F GL+ K+ +P+T L F SGKL+
Sbjct: 6 IKIENIVASASIGKDIVLTEVSEALEGVNFNREQFPGLVFKLKDPKTAALIFSSGKLVCT 65
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK D KLA +K +++ + I ++ KI NIV + ++ + L+A+ + + +
Sbjct: 66 GAKSIDDSKLAIKKTVDLMRTIDTEIPHEFEIKIQNIVASANLESTLNLEAVA-LELEDT 124
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P+VVLL+F +G++V TGAK+RS+ + Y L
Sbjct: 125 EYEPEQFPGLVYRLSDPKVVLLLFGSGKVVCTGAKTRSDAKLGVERAYDRLSEL 178
>gi|124506045|ref|XP_001351620.1| transcription initiation factor TFiid, TATA-binding protein
[Plasmodium falciparum 3D7]
gi|23504547|emb|CAD51427.1| transcription initiation factor TFiid, TATA-binding protein
[Plasmodium falciparum 3D7]
Length = 327
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 112/183 (61%), Gaps = 12/183 (6%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ N++ + ++ ++L + +R +EYNP K + LI+++ P+ T L F++G++++
Sbjct: 149 LNIHNIISSANLCIDINLRLVAVSIRNAEYNPSKINTLIIRLNKPQCTALIFKNGRIMLT 208
Query: 61 GAKHEHD----CKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 116
G + + D CK ++ + K +K+ FKI NI+ + + P++L+ L H H
Sbjct: 209 GTRTKKDSIMGCKKIAKIIKIVTKD---KVKFCNFKIENIIASANCNIPIRLEVLAHDHK 265
Query: 117 QFSSYEPELFPGLIYRMVKP----RVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
++ +YEPELF GL+YR KP + V+LIFV+G+I+ITG KS ++L+ F +IY VL
Sbjct: 266 EYCNYEPELFAGLVYRY-KPTSNLKSVILIFVSGKIIITGCKSVNKLYTVFQDIYNVLIQ 324
Query: 173 FKK 175
+K
Sbjct: 325 YKN 327
>gi|8777987|gb|AAF79170.1| TATA-box binding protein [Brachionus plicatilis]
Length = 109
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 77/109 (70%)
Query: 12 VGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 71
+GC L+L +I R +EYNP +F +IM+I +PRTT L F SGK++ GAK E D +LA
Sbjct: 1 LGCNLELKKIALYARNAEYNPKRFAAVIMRIRSPRTTALIFSSGKMVCTGAKSEEDSRLA 60
Query: 72 SRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
+RK+A+I+++LG P K+ FKI NIV + DV F ++L+ H HSQFSS
Sbjct: 61 ARKYARIIQKLGFPAKFMDFKIQNIVGSIDVGFCLRLECFHTCHSQFSS 109
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 114 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSE 158
++++ + Y P+ F +I R+ PR LIF +G++V TGAKS +
Sbjct: 12 LYARNAEYNPKRFAAVIMRIRSPRTTALIFSSGKMVCTGAKSEED 56
>gi|449067334|ref|YP_007434416.1| transcription factor [Sulfolobus acidocaldarius N8]
gi|449069604|ref|YP_007436685.1| transcription factor [Sulfolobus acidocaldarius Ron12/I]
gi|449035842|gb|AGE71268.1| transcription factor [Sulfolobus acidocaldarius N8]
gi|449038112|gb|AGE73537.1| transcription factor [Sulfolobus acidocaldarius Ron12/I]
Length = 177
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 10 ISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCK 69
+++ LDL + V EY+P +F GLI ++ +P+ T L F+SGK+++ GAK +
Sbjct: 1 MTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAKSTDELI 60
Query: 70 LASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPG 128
A ++ K LK+ G + + +I NIV + ++ V LD + + YEPE FPG
Sbjct: 61 KAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLLEN-NMYEPEQFPG 119
Query: 129 LIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIY 167
LIYRM +PRVVLLIF +G++VITGAK E+H+A I+
Sbjct: 120 LIYRMDEPRVVLLIFSSGKMVITGAKREDEVHKAVKKIF 158
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
Y+P+ FPGLI+R+ P++ LIF +G++V+TGAKS EL +A I LK + Q
Sbjct: 20 EYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKKYGMQ 76
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ ++L++ + + Y P +F GLI ++ PR L F SGK++I
Sbjct: 83 IQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVIT 142
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GAK E + A +K L +L
Sbjct: 143 GAKREDEVHKAVKKIFDKLVEL 164
>gi|392522737|gb|AFM78157.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 78/113 (69%), Gaps = 1/113 (0%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 92
+F +I ++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G P FK
Sbjct: 2 RFAAVITRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
+ N+V T DV FP++L+ L + HS F+SYEPELFPGLIYR+ +P+VV L+FV+
Sbjct: 62 VQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
QNMVGT+ VG P+ L + + ++ Y P F GLI ++ P+ L F S
Sbjct: 63 QNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|8777977|gb|AAF79165.1|AF249988_1 TATA-box binding protein 1 [Philodina roseola]
Length = 108
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 79/107 (73%)
Query: 12 VGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 71
+GCPLDL +I + R +EYNP +F +IM+I +PRTT L F SGK++ GAK E+D A
Sbjct: 1 LGCPLDLKRIALQARNAEYNPKRFAAVIMRIRSPRTTALIFGSGKMVCTGAKSENDSLQA 60
Query: 72 SRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 118
+R++A+++++LG P K++ FKI N+V + DV+FP++L+AL H QF
Sbjct: 61 ARRYARVIQKLGFPAKFRDFKIQNMVGSVDVKFPIRLEALVLKHYQF 107
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 114 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
+ ++ + Y P+ F +I R+ PR LIF +G++V TGAKS ++ +A
Sbjct: 12 LQARNAEYNPKRFAAVIMRIRSPRTTALIFGSGKMVCTGAKSENDSLQA 60
>gi|161899533|ref|XP_001712992.1| TATA binding protein of transcription factor IID [Bigelowiella
natans]
gi|75756487|gb|ABA27380.1| TATA binding protein of transcription factor IID [Bigelowiella
natans]
Length = 204
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 98/163 (60%), Gaps = 1/163 (0%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V ++ + LDL +I R + +E+N +FHGLIM+ +P+ T + F+SG ++ GAK
Sbjct: 22 NVVLSVRLDSILDLKKIALRSKNTEFNSKRFHGLIMRSRDPKATAIVFKSGSMICTGAKS 81
Query: 65 EHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D K A KF KI++ G +K Q ++I NI T D + P+ L +H + + +EP
Sbjct: 82 EKDGKEAILKFVKIIRNAGFTDLKMQNYRITNIFATMDYKVPINLMQIHIAFPRITKHEP 141
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
E+ GL+Y ++++ I+ +G+I ITGAKS S L +N+
Sbjct: 142 EVHRGLLYYPFDTKLLVTIYASGKITITGAKSMSILERVRNNL 184
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 90 GFKIHNIVCTC--DVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGR 147
+KIHN+V + D +K AL +++F+S + F GLI R P+ ++F +G
Sbjct: 17 AYKIHNVVLSVRLDSILDLKKIALRSKNTEFNS---KRFHGLIMRSRDPKATAIVFKSGS 73
Query: 148 IVITGAKSRSELHEA 162
++ TGAKS + EA
Sbjct: 74 MICTGAKSEKDGKEA 88
>gi|242015292|ref|XP_002428298.1| trf2 protein, putative [Pediculus humanus corporis]
gi|212512883|gb|EEB15560.1| trf2 protein, putative [Pediculus humanus corporis]
Length = 289
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 105/173 (60%), Gaps = 4/173 (2%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 63
N+V + SV C L+L +I + EY K +G++ MK+ P TT + SGK+ GA
Sbjct: 56 NVVCSFSVRCHLNLKEIATHGANVEYR--KENGMVTMKLRKPYTTASIWSSGKITCTGAT 113
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E + K+A+R+FA+ L++LG +++ F++ N++ TC + F +K+++ + + + YEP
Sbjct: 114 SEDNAKIAARRFARSLQKLGFEVRFNNFRVVNVLGTCSMPFGIKINSFSAKYPKQAEYEP 173
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
E+ PG+ YR+ P+ L IF G I +T A S + A ++IYP++ FKK+
Sbjct: 174 EIHPGVTYRLKDPKATLKIFSTGSITVT-APCVSSIAAAIEHIYPLVYEFKKE 225
>gi|390938384|ref|YP_006402122.1| TATA binding protein of transcription factor TFIID [Desulfurococcus
fermentans DSM 16532]
gi|390191491|gb|AFL66547.1| TATA binding protein of transcription factor TFIID [Desulfurococcus
fermentans DSM 16532]
Length = 194
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 95/166 (57%), Gaps = 6/166 (3%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+ + LDL I +R+ Y P +F GLI ++ PR T L F+SGK+++ G K
Sbjct: 13 ENIVATVILEHDLDLELIETRIPSITYKPDQFPGLIFRLDKPRATALVFKSGKMVVTGTK 72
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
A +K K + G + G +I NIV D+ V L+ + H + S
Sbjct: 73 STQQLVEAVKKIIKTFVKNG--VNVHGRPRVQIQNIVAGGDIHAYVNLEKAAY-HLEDSM 129
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGLI+RM PRVVLLIF +G++VITGAK E+ A +NI
Sbjct: 130 YEPEQFPGLIHRMRDPRVVLLIFSSGKMVITGAKEEVEVERAVNNI 175
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++L + + S Y P +F GLI ++ +PR L F SGK++I
Sbjct: 101 VQIQNIVAGGDIHAYVNLEKAAYHLEDSMYEPEQFPGLIHRMRDPRVVLLIFSSGKMVIT 160
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK E + + A A+ L + G
Sbjct: 161 GAKEEVEVERAVNNIARQLYKAG 183
>gi|218883586|ref|YP_002427968.1| transcription factor [Desulfurococcus kamchatkensis 1221n]
gi|218765202|gb|ACL10601.1| transcription factor - TATA-box-binding protein [Desulfurococcus
kamchatkensis 1221n]
Length = 194
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 95/166 (57%), Gaps = 6/166 (3%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+ + LDL I +R+ Y P +F GLI ++ PR T L F+SGK+++ G K
Sbjct: 13 ENIVATVILEHDLDLELIETRIPSITYKPDQFPGLIFRLDKPRATALVFKSGKMVVTGTK 72
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
A +K K + G + G +I NIV D+ V L+ + H + S
Sbjct: 73 STQQLVEAVKKIIKTFVKNG--VNVHGRPRVQIQNIVAGGDIHAYVNLEKAAY-HLEDSM 129
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGLI+RM PRVVLLIF +G++VITGAK E+ A +NI
Sbjct: 130 YEPEQFPGLIHRMRDPRVVLLIFSSGKMVITGAKEEVEVERAVNNI 175
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++L + + S Y P +F GLI ++ +PR L F SGK++I
Sbjct: 101 VQIQNIVAGGDIHAYVNLEKAAYHLEDSMYEPEQFPGLIHRMRDPRVVLLIFSSGKMVIT 160
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK E + + A A+ L + G
Sbjct: 161 GAKEEVEVERAVNNIARQLYKAG 183
>gi|227827548|ref|YP_002829328.1| transcription factor [Sulfolobus islandicus M.14.25]
gi|227830235|ref|YP_002832015.1| transcription factor [Sulfolobus islandicus L.S.2.15]
gi|229579050|ref|YP_002837448.1| transcription factor [Sulfolobus islandicus Y.G.57.14]
gi|229582199|ref|YP_002840598.1| transcription factor [Sulfolobus islandicus Y.N.15.51]
gi|229584751|ref|YP_002843253.1| transcription factor [Sulfolobus islandicus M.16.27]
gi|238619705|ref|YP_002914531.1| transcription factor [Sulfolobus islandicus M.16.4]
gi|284997658|ref|YP_003419425.1| TATA-box binding protein [Sulfolobus islandicus L.D.8.5]
gi|385773217|ref|YP_005645783.1| TATA-box binding family protein [Sulfolobus islandicus HVE10/4]
gi|385775851|ref|YP_005648419.1| TATA-box binding family protein [Sulfolobus islandicus REY15A]
gi|227456683|gb|ACP35370.1| TATA-box binding family protein [Sulfolobus islandicus L.S.2.15]
gi|227459344|gb|ACP38030.1| TATA-box binding family protein [Sulfolobus islandicus M.14.25]
gi|228009764|gb|ACP45526.1| TATA-box binding family protein [Sulfolobus islandicus Y.G.57.14]
gi|228012915|gb|ACP48676.1| TATA-box binding family protein [Sulfolobus islandicus Y.N.15.51]
gi|228019801|gb|ACP55208.1| TATA-box binding family protein [Sulfolobus islandicus M.16.27]
gi|238380775|gb|ACR41863.1| TATA-box binding family protein [Sulfolobus islandicus M.16.4]
gi|284445553|gb|ADB87055.1| TATA-box binding protein [Sulfolobus islandicus L.D.8.5]
gi|323474599|gb|ADX85205.1| TATA-box binding family protein [Sulfolobus islandicus REY15A]
gi|323477331|gb|ADX82569.1| TATA-box binding family protein [Sulfolobus islandicus HVE10/4]
Length = 181
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 97/164 (59%), Gaps = 6/164 (3%)
Query: 7 VGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEH 66
+ T+++ LDL + + EY+P +F GLI ++ P+ T L F+SGK+++ GAK
Sbjct: 1 MATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVVTGAKSTE 60
Query: 67 DCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ A ++ K LK+ G IK G +I NIV + ++ V LD + + YEP
Sbjct: 61 ELIKAVKRIIKTLKKYG--IKIMGKPKIQIQNIVASANLHVNVNLDKAAFLLEN-NMYEP 117
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIY 167
E FPGLI+RM PRVVLLIF +G++VITGAK E+ +A I+
Sbjct: 118 EQFPGLIFRMDDPRVVLLIFSSGKMVITGAKREDEVSKAVKRIF 161
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
Y+P+ FPGLI+R+ +P+V LIF +G++V+TGAKS EL +A I LK +
Sbjct: 23 EYDPDQFPGLIFRLEQPKVTALIFKSGKMVVTGAKSTEELIKAVKRIIKTLKKY 76
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ ++L++ + + Y P +F GLI ++ +PR L F SGK++I
Sbjct: 86 IQIQNIVASANLHVNVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVIT 145
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GAK E + A ++ L +L
Sbjct: 146 GAKREDEVSKAVKRIFDKLAEL 167
>gi|150400624|ref|YP_001324390.1| transcription factor [Methanococcus aeolicus Nankai-3]
gi|166227819|sp|A6UTF6.1|TBP_META3 RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|150013327|gb|ABR55778.1| TATA-box binding protein [Methanococcus aeolicus Nankai-3]
Length = 181
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 100/173 (57%), Gaps = 3/173 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + +G +DL + + SEY P +F GL+ ++ +P+ L F+SGKL GAK
Sbjct: 9 NVVVSTKIGDDIDLEYVADVLDNSEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTGAKS 68
Query: 65 EHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ D +A K + L++ G I K+ N+V T ++ LD L + + YEP
Sbjct: 69 KEDAVIAINKVMEYLREAGLDLIDTPEVKVQNMVATAELGMEPNLDDLSTLER--TEYEP 126
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
E FPGL+YRM P+VVLL+F +G++VITG K++ + + A + I +K +++
Sbjct: 127 EQFPGLVYRMESPKVVLLVFGSGKVVITGLKNKEDAYIALEKIKNTVKELEEE 179
>gi|150400012|ref|YP_001323779.1| transcription factor [Methanococcus vannielii SB]
gi|166227822|sp|A6URP5.1|TBP_METVS RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|150012715|gb|ABR55167.1| TATA-box binding [Methanococcus vannielii SB]
Length = 181
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 99/173 (57%), Gaps = 3/173 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + +G +DL + +EY P +F GL+ ++ +P+ L F+SGKL GAK
Sbjct: 9 NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTGAKS 68
Query: 65 EHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ D ++A +K K LK+ G I + N+V T ++ LD + + + YEP
Sbjct: 69 KEDAEIAIKKIIKELKEAGMEIIDNPVVSVQNMVATTELGMEPNLDDISTLEC--TEYEP 126
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
E FPGL+YR+ P+VV+LIF +G++VITG K + + AFD I LK +++
Sbjct: 127 EQFPGLVYRLSDPKVVVLIFGSGKVVITGLKVIEDAYIAFDKISATLKELEQE 179
>gi|195164313|ref|XP_002022993.1| GL16412 [Drosophila persimilis]
gi|194105055|gb|EDW27098.1| GL16412 [Drosophila persimilis]
Length = 987
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 64/173 (36%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 63
N+V + SV C L L I R EY + +G++ MK+ P TT + SG++ GA
Sbjct: 505 NVVCSFSVRCHLKLRDIALRGCNVEYR--RENGMVTMKLRRPYTTASIWSSGRITCTGAT 562
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E K+A+R++A+ L +LG P ++Q F+I N++ TC + + +K+ H +SYEP
Sbjct: 563 SEIMAKVAARRYARCLGKLGFPTRFQNFRIVNVLGTCSMPWAIKIVNFSEKHRDNASYEP 622
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EL PG+ Y+M P+ L IF G I +T A S +++ A +IYP++ F+KQ
Sbjct: 623 ELHPGVTYKMKMPKATLKIFSTGSITVTAA-SVNDVESAIQHIYPLVHEFRKQ 674
>gi|56755940|gb|AAW26148.1| SJCHGC04294 protein [Schistosoma japonicum]
Length = 99
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 69/81 (85%)
Query: 96 IVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKS 155
+V +CDVRF ++L+ L QF++YEPELFPGLIYRM KP++VLL+FV+G+IV+TGAK
Sbjct: 1 MVGSCDVRFHIRLEGLVLSQGQFATYEPELFPGLIYRMTKPKIVLLVFVSGKIVLTGAKV 60
Query: 156 RSELHEAFDNIYPVLKSFKKQ 176
R E++EAF+NIYP+LK+FKK
Sbjct: 61 REEIYEAFNNIYPILKNFKKS 81
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 6 MVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
MVG+ V + L + S+ +++ Y P F GLI ++ P+ L F SGK+++ GAK
Sbjct: 1 MVGSCDVRFHIRLEGLVLSQGQFATYEPELFPGLIYRMTKPKIVLLVFVSGKIVLTGAKV 60
Query: 65 EHDCKLASRKFAKILKQL 82
+ A ILK
Sbjct: 61 REEIYEAFNNIYPILKNF 78
>gi|392522753|gb|AFM78165.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 92
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G P FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDETDFK 61
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
+ N+V T DV FP++L+ L + H F+SYEPELFPGLIYR+ +P+ V L+FV+
Sbjct: 62 VQNMVGTLDVGFPIRLEGLVYAHFTFASYEPELFPGLIYRLYEPKAVFLVFVS 114
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
QNMVGT+ VG P+ L + + ++ Y P F GLI ++ P+ L F S
Sbjct: 63 QNMVGTLDVGFPIRLEGLVYAHFTFASYEPELFPGLIYRLYEPKAVFLVFVS 114
>gi|198471801|ref|XP_001355729.2| GA14764 [Drosophila pseudoobscura pseudoobscura]
gi|198146086|gb|EAL32788.2| GA14764 [Drosophila pseudoobscura pseudoobscura]
Length = 1037
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 64/173 (36%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 63
N+V + SV C L L I R EY + +G++ MK+ P TT + SG++ GA
Sbjct: 556 NVVCSFSVRCHLKLRDIALRGCNVEYR--RENGMVTMKLRRPYTTASIWSSGRITCTGAT 613
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E K+A+R++A+ L +LG P ++Q F+I N++ TC + + +K+ H +SYEP
Sbjct: 614 SEIMAKVAARRYARCLGKLGFPTRFQNFRIVNVLGTCSMPWAIKIVNFSEKHRDNASYEP 673
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EL PG+ Y+M P+ L IF G I +T A S +++ A +IYP++ F+KQ
Sbjct: 674 ELHPGVTYKMKMPKATLKIFSTGSITVTAA-SVNDVESAIQHIYPLVHEFRKQ 725
>gi|392522749|gb|AFM78163.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 78/113 (69%), Gaps = 1/113 (0%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 92
+F +I ++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G P FK
Sbjct: 2 RFATVITRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDGIDFK 61
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
+ N+V T DV FP++L+ L + HS F+SYEPELFPGLIYR+ +P+VV L+FV+
Sbjct: 62 VQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 4 QNMVGTISVGCPLDLNQ-INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
QNMVGT+ VG P+ L + + ++ Y P F GLI ++ P+ L F S
Sbjct: 63 QNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|315427150|dbj|BAJ48765.1| transcription initiation factor TFIID TATA-box-binding protein
[Candidatus Caldiarchaeum subterraneum]
gi|315427168|dbj|BAJ48782.1| transcription initiation factor TFIID TATA-box-binding protein
[Candidatus Caldiarchaeum subterraneum]
gi|343485784|dbj|BAJ51438.1| transcription initiation factor TFIID TATA-box-binding protein
[Candidatus Caldiarchaeum subterraneum]
Length = 187
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 102/177 (57%), Gaps = 10/177 (5%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V ++++ LDL QI EY P +F GL+ ++ P+T L F SGK++
Sbjct: 9 VEIQNVVSSVTLFQKLDLAQIQRTFPDVEYKPAQFPGLVFRLAKPKTATLIFSSGKMVCT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLD----ALHHVH 115
GAK E + A R K LK+ G I+ + +I NIV + D+ + L+ L +V
Sbjct: 69 GAKSEEESIRAVRTVVKALKKEGFVIREEPQIEIQNIVASIDLHGRIDLERAATTLENVM 128
Query: 116 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
YEPE FPGLIYRM P+VV+L+F +G++V TGAK ++++A + + +L+
Sbjct: 129 -----YEPEQFPGLIYRMNSPKVVILMFASGKLVCTGAKYEKDVYDAVNKLQQLLEE 180
>gi|118358642|ref|XP_001012562.1| TATA-box binding protein [Tetrahymena thermophila]
gi|89294329|gb|EAR92317.1| TATA-box binding protein [Tetrahymena thermophila SB210]
Length = 231
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 105/174 (60%), Gaps = 14/174 (8%)
Query: 16 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRK- 74
DL +I + R ++YNP +F + M+I +P+ T L + SG + I+G + ++ + A+ +
Sbjct: 39 FDLQEIAQKCRNTQYNPKRFPAVFMRIKDPKATGLIYSSGNMTIVGTRSTNESQTAAERI 98
Query: 75 FAKILKQLGHPIKYQG--FKIHNIVCTCDVRFPVKLDALHH--VHSQFSSYEPELFPGLI 130
F I KQL +++ ++ NIV +C + +PV LD +H H QFS+Y+ + FPGLI
Sbjct: 99 FGIIKKQLNVDCRFENKEVQVRNIVASCKLGYPVCLDKIHDDKDHKQFSTYD-DTFPGLI 157
Query: 131 YR-MVKP-------RVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YR M+ P ++ L+F +G++V TGAKS+ ++ +A+D I P +F K+
Sbjct: 158 YRYMLNPGEQKKKNNIIALVFASGKMVFTGAKSQEDIQQAYDKIKPEFVAFMKK 211
>gi|448540133|ref|ZP_21623370.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|448551731|ref|ZP_21629465.1| transcription factor [Haloferax sp. ATCC BAA-645]
gi|448553994|ref|ZP_21630784.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|445710007|gb|ELZ61830.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|445710121|gb|ELZ61943.1| transcription factor [Haloferax sp. ATCC BAA-645]
gi|445719179|gb|ELZ70861.1| transcription factor [Haloferax sp. ATCC BAA-644]
Length = 188
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 95/168 (56%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + V LDL +++ + ++Y+P F GL+ + NP++ CL F+SGK++
Sbjct: 10 IEIQNVVASTEVPVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACLVFRSGKVVCT 69
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GA D A +LG PI + NIV + D+ + L+AL + +
Sbjct: 70 GADSVDDVSTAIETLFDEFTELGIPIPDDPDITVQNIVSSADLGAALNLNALAIGLGLEA 129
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YR+ +P VV+L+F +G+IVITGAK S+ A + +
Sbjct: 130 VEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVITGAKRVSDAETALETV 177
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 91 FKIHNIVCTCDVRFPVKLDALH-HVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIV 149
+I N+V + +V PV+LD + + Y+PE FPGL+YR P+ L+F +G++V
Sbjct: 10 IEIQNVVASTEV--PVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACLVFRSGKVV 67
Query: 150 ITGAKSRSELHEAFDNIY 167
TGA S ++ A + ++
Sbjct: 68 CTGADSVDDVSTAIETLF 85
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGK++
Sbjct: 101 ITVQNIVSSADLGAALNLNALAIGLGLEAVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIV 160
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I GAK D + A +++LG
Sbjct: 161 ITGAKRVSDAETALETVDDDVRELG 185
>gi|433593266|ref|YP_007282752.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|433308304|gb|AGB34114.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
Length = 194
Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 100/176 (56%), Gaps = 2/176 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + VG L+L + + +SEYNPG F G++ +I +P L F+SGK++
Sbjct: 8 LKIENVVASTGVGQELNLEALADDLPHSEYNPGNFPGMVHRIQDPNAVTLLFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GA+ D A + L+ LG + Q I NIV + D+ + L+A+ + +
Sbjct: 68 GAQSTADVTDALNILFQDLRDLGIDVVDQPEITIQNIVSSGDLGEQIDLNAIAIGLGLEH 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
+ YEPE FPGL+YR+ P VV+L+F +G++VITGAK+R A + ++ L+
Sbjct: 128 TEYEPEQFPGLVYRLTSPPVVVLLFGSGKLVITGAKTRDNAQSALETVHSRLRELD 183
>gi|195044570|ref|XP_001991843.1| GH11849 [Drosophila grimshawi]
gi|193901601|gb|EDW00468.1| GH11849 [Drosophila grimshawi]
Length = 689
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 64/176 (36%), Positives = 101/176 (57%), Gaps = 10/176 (5%)
Query: 5 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 60
N+V + SV C L L +I S V Y N G++ MK+ P TT + SG++
Sbjct: 216 NVVCSFSVRCHLKLREIALNGSNVEYRREN-----GMVTMKLRRPYTTASIWSSGRITCT 270
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GA E K+A+R++A+ L +LG P +Q F+I N++ TC + + +K+ H +S
Sbjct: 271 GATSELQAKIAARRYARCLGKLGFPTHFQHFRIVNVLGTCSMPWAIKIVNFSERHRDNAS 330
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YEPEL PG+ Y+M +P+ L IF G I +T A + +++ A +IYP++ F+KQ
Sbjct: 331 YEPELHPGVTYKMREPKATLKIFSTGSITVT-APTVNDVESAIQHIYPLVHEFRKQ 385
>gi|15897830|ref|NP_342435.1| transcription factor [Sulfolobus solfataricus P2]
gi|284175636|ref|ZP_06389605.1| transcription factor [Sulfolobus solfataricus 98/2]
gi|384434381|ref|YP_005643739.1| TATA-box binding family protein [Sulfolobus solfataricus 98/2]
gi|13814131|gb|AAK41225.1| TATA box binding protein, hypothetical (tfIID) [Sulfolobus
solfataricus P2]
gi|261602535|gb|ACX92138.1| TATA-box binding family protein [Sulfolobus solfataricus 98/2]
Length = 181
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 97/164 (59%), Gaps = 6/164 (3%)
Query: 7 VGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEH 66
+ T+++ LDL + + EY+P +F GLI ++ P+ T L F+SGK+++ GAK
Sbjct: 1 MATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVVTGAKSTE 60
Query: 67 DCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ A ++ K LK+ G IK G +I NIV + ++ V LD + + YEP
Sbjct: 61 ELIKAVKRIIKTLKKYG--IKIVGKPKIQIQNIVASANLHVNVNLDKAAFLLEN-NMYEP 117
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIY 167
E FPGLI+RM PRVVLLIF +G++VITGAK E+ +A I+
Sbjct: 118 EQFPGLIFRMDDPRVVLLIFSSGKMVITGAKREDEVSKAVKRIF 161
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
Y+P+ FPGLI+R+ +P+V LIF +G++V+TGAKS EL +A I LK +
Sbjct: 23 EYDPDQFPGLIFRLEQPKVTALIFKSGKMVVTGAKSTEELIKAVKRIIKTLKKY 76
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ ++L++ + + Y P +F GLI ++ +PR L F SGK++I
Sbjct: 86 IQIQNIVASANLHVNVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVIT 145
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GAK E + A ++ L +L
Sbjct: 146 GAKREDEVSKAVKRIFDKLAEL 167
>gi|288559645|ref|YP_003423131.1| TATA-box binding protein Tbp [Methanobrevibacter ruminantium M1]
gi|288542355|gb|ADC46239.1| TATA-box binding protein Tbp [Methanobrevibacter ruminantium M1]
Length = 181
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + S+G + L ++ + ++N +F GL+ K+ +P+T L F SGKL+
Sbjct: 6 IKIENIVASASIGKDIVLTEVAKALEGVDFNREQFPGLVFKLQDPKTAALIFSSGKLVCT 65
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK D KLA +K +++ + I ++ KI NIV + +++ + L+A+ + + +
Sbjct: 66 GAKSIDDSKLAIKKTVDLMRTIDTEIPHEFDIKIQNIVASANLQSTLNLEAV-ALELENT 124
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDN 165
YEPE FPGL+YR+ P+VVLL+F +G++V TGAK++ + +N
Sbjct: 125 EYEPEQFPGLVYRLSDPKVVLLLFGSGKVVCTGAKTKQDARLGVEN 170
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ L+L + + +EY P +F GL+ ++ +P+ L F SGK++
Sbjct: 97 IKIQNIVASANLQSTLNLEAVALELENTEYEPEQFPGLVYRLSDPKVVLLLFGSGKVVCT 156
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GAK + D +L L +L
Sbjct: 157 GAKTKQDARLGVENAKARLSEL 178
>gi|342306417|dbj|BAK54506.1| TATA box-binding protein [Sulfolobus tokodaii str. 7]
Length = 175
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 92/153 (60%), Gaps = 2/153 (1%)
Query: 16 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 75
LDL + V EY+P +F GLI ++ P+ T L F+SGK+++ GAK + A ++
Sbjct: 5 LDLYAMERSVPNVEYDPDQFPGLIFRLEAPKVTSLIFKSGKMVVTGAKSTDELIKAVKRI 64
Query: 76 AKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMV 134
K LK+ G + + +I NIV + ++ V LD + + YEPE FPGLIYRM
Sbjct: 65 IKTLKRYGMNLTGKPKIQIQNIVASANLHVIVNLDKAAFLLEN-NMYEPEQFPGLIYRME 123
Query: 135 KPRVVLLIFVNGRIVITGAKSRSELHEAFDNIY 167
PRVVLLIF +G++VITGAK E+H+A I+
Sbjct: 124 DPRVVLLIFSSGKMVITGAKREEEVHKAVKKIF 156
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
Y+P+ FPGLI+R+ P+V LIF +G++V+TGAKS EL +A I LK +
Sbjct: 18 EYDPDQFPGLIFRLEAPKVTSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKRY 71
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ ++L++ + + Y P +F GLI ++ +PR L F SGK++I
Sbjct: 81 IQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMEDPRVVLLIFSSGKMVIT 140
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GAK E + A +K L +L
Sbjct: 141 GAKREEEVHKAVKKIFDKLVEL 162
>gi|328794393|ref|XP_001123347.2| PREDICTED: TATA-box-binding protein-like, partial [Apis mellifera]
Length = 169
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 70/98 (71%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++G L L IN+R R SEYNP +F GLIM+I NPR T L F SGK++ GA+
Sbjct: 69 QNVVSTVNLGIELPLMYINTRTRNSEYNPARFMGLIMRIRNPRATALIFHSGKIVCTGAR 128
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCD 101
E D LA+RKFA+I+++LG K+ FKI NIV TCD
Sbjct: 129 SEEDSYLATRKFARIIQKLGFAAKFYNFKIQNIVATCD 166
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
+ N+V T ++ + L ++ ++ S Y P F GLI R+ PR LIF +G+IV TG
Sbjct: 68 LQNVVSTVNLGIELPLMYIN-TRTRNSEYNPARFMGLIMRIRNPRATALIFHSGKIVCTG 126
Query: 153 AKSRSELHEA 162
A+S + + A
Sbjct: 127 ARSEEDSYLA 136
>gi|195438615|ref|XP_002067228.1| GK16294 [Drosophila willistoni]
gi|194163313|gb|EDW78214.1| GK16294 [Drosophila willistoni]
Length = 1222
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 63/173 (36%), Positives = 102/173 (58%), Gaps = 4/173 (2%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 63
N+V + SV C L L +I EY + +G++ MK+ +P TT + SG++ GA
Sbjct: 736 NVVCSFSVRCHLKLREIALHGANVEYR--RENGMVTMKLRHPYTTASIWSSGRITCTGAT 793
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E K+A+R++A+ L +LG P ++Q F+I N++ TC + + +K+ H +SYEP
Sbjct: 794 SEIMAKVAARRYARCLGKLGFPTRFQNFRIVNVLGTCSMPWAIKIVNFSERHRDNASYEP 853
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EL PG+ Y+M +P+ L IF G I +T A S +++ A +IYP+ F+KQ
Sbjct: 854 ELHPGVTYKMREPKATLKIFSTGSITVTAA-SVNDVEAAIQHIYPLAYEFRKQ 905
>gi|358338377|dbj|GAA56757.1| TATA box-binding protein-like protein 2, partial [Clonorchis
sinensis]
Length = 92
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 72/89 (80%)
Query: 87 KYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNG 146
++ F + N+V D+RFP++L+ L + Q + YEPELFPGLIYR++KPR+V+LIFVNG
Sbjct: 2 RFFDFTVQNMVGLFDLRFPIRLEGLLLANEQMTQYEPELFPGLIYRIIKPRLVMLIFVNG 61
Query: 147 RIVITGAKSRSELHEAFDNIYPVLKSFKK 175
+IV+TGAKSR +++EA +N+YP+L +++K
Sbjct: 62 KIVMTGAKSREQMYEALNNVYPILHNYRK 90
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QNMVG + P+ L + + + ++Y P F GLI +I+ PR L F +GK+++ GA
Sbjct: 9 QNMVGLFDLRFPIRLEGLLLANEQMTQYEPELFPGLIYRIIKPRLVMLIFVNGKIVMTGA 68
Query: 63 KHEHDCKLASRKFAKIL 79
K A IL
Sbjct: 69 KSREQMYEALNNVYPIL 85
>gi|297620217|ref|YP_003708322.1| TATA-box binding family protein [Methanococcus voltae A3]
gi|297379194|gb|ADI37349.1| TATA-box binding family protein [Methanococcus voltae A3]
Length = 181
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 98/173 (56%), Gaps = 3/173 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + +G +DL + +EY P +F GL+ ++ +P+ L F+SGKL GAK
Sbjct: 9 NVVVSTQIGTDIDLEYAADVLDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTGAKS 68
Query: 65 EHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ D ++A +K LK+ G I I N+V T ++ LD + + + YEP
Sbjct: 69 KSDAEIAIKKIIAELKEAGMEIIDNPEVSIQNMVATTELGMEPNLDDISTLEC--TEYEP 126
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
E FPGL+YR+ P+VV+LIF +G++VITG K + + AF+ I LK +++
Sbjct: 127 EQFPGLVYRLSDPKVVVLIFGSGKVVITGLKKIDDAYTAFNKILTTLKELEEE 179
>gi|289193261|ref|YP_003459202.1| TATA-box binding family protein [Methanocaldococcus sp. FS406-22]
gi|288939711|gb|ADC70466.1| TATA-box binding family protein [Methanocaldococcus sp. FS406-22]
Length = 180
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + +G +DL ++ + +EY P +F GL+ ++ P+ L F+SGK+ GAK
Sbjct: 9 NVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKS 68
Query: 65 EHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ + ++A +K K LK+ G I+ KI N+V T D+ LD + + + + YEP
Sbjct: 69 KEEAEIAIKKVIKELKEAGMDVIENPDIKIQNMVATADLGIEPNLDDIA-LMVEGTEYEP 127
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
E FPGL+YR+ P+VV+LIF +G++VITG KS + A I +K ++
Sbjct: 128 EQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALKKILDTIKEVQE 179
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV T +G +L+ I V +EY P +F GL+ ++ +P+ L F SGK++I
Sbjct: 96 IKIQNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVIT 155
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
G K E D K A +K +K++
Sbjct: 156 GLKSEEDAKRALKKILDTIKEV 177
>gi|118575298|ref|YP_875041.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Cenarchaeum symbiosum A]
gi|118193819|gb|ABK76737.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Cenarchaeum symbiosum A]
Length = 186
Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + SV +DLN + + +EYNP +F GL+ ++ +P+T L F++GK++ GAK
Sbjct: 11 ENVVASASVDQKIDLNDVTKKFPDTEYNPEQFPGLVFRLTSPKTATLIFRTGKMVCTGAK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKI-HNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E A R + L++ G IK + NIV ++ + L+ V + S YE
Sbjct: 71 SEDMAVKAVRTVVQKLRKSGIKIKKDAVVVVQNIVAAINLGGKIHLEKAARVLPR-SMYE 129
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
PE FPGLI+RM+ P+ V+L+F +G++V TGAK S+++ + N++ +L+
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESDMYRSVYNLHALLEE 179
>gi|261403691|ref|YP_003247915.1| transcription factor [Methanocaldococcus vulcanius M7]
gi|261370684|gb|ACX73433.1| TATA-box binding family protein [Methanocaldococcus vulcanius M7]
Length = 180
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + +G +DL ++ + +EY P +F GL+ ++ P+ L F+SGK+ GAK
Sbjct: 9 NVVVSTKIGDNIDLEEVALILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKS 68
Query: 65 EHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ + ++A +K K LK G I+ KI N+V T D+ LD + + + + YEP
Sbjct: 69 KEEAEIAIKKIIKELKDAGIEVIENPEIKIQNMVATADLGIEPNLDDIA-LMVEGTEYEP 127
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
E FPGL+YR+ P+VV+LIF +G++VITG KS + A + I +K ++
Sbjct: 128 EQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALNKILETIKEVQE 179
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV T +G +L+ I V +EY P +F GL+ ++ +P+ L F SGK++I
Sbjct: 96 IKIQNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVIT 155
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
G K E D K A K + +K++
Sbjct: 156 GLKSEEDAKRALNKILETIKEV 177
>gi|8777975|gb|AAF79164.1|AF249987_1 TATA-box binding protein 1 [Macrotrachela quadricornifera]
Length = 108
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 78/107 (72%)
Query: 12 VGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 71
+GCPLDL +I + R +EYNP +F +IM I +PRTT L F SGK++ GAK E+D A
Sbjct: 1 LGCPLDLKRIALQARNAEYNPKRFAAVIMCIRSPRTTALIFGSGKMVCTGAKSENDSLQA 60
Query: 72 SRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 118
+R++A+++++LG P K++ FKI N+V + DV+FP++L+AL H QF
Sbjct: 61 ARRYARVIQKLGFPAKFRDFKIQNMVGSVDVKFPIRLEALVLKHYQF 107
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 114 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
+ ++ + Y P+ F +I + PR LIF +G++V TGAKS ++ +A
Sbjct: 12 LQARNAEYNPKRFAAVIMCIRSPRTTALIFGSGKMVCTGAKSENDSLQA 60
>gi|389848878|ref|YP_006351115.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|448614622|ref|ZP_21663769.1| transcription factor [Haloferax mediterranei ATCC 33500]
gi|388246184|gb|AFK21128.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|445753956|gb|EMA05371.1| transcription factor [Haloferax mediterranei ATCC 33500]
Length = 188
Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + V LDL++++ + ++Y+P F GL+ + NP+ CL F+SGK++
Sbjct: 10 VEVQNVVASTEVTLELDLDRLSLDMSGTDYDPENFPGLVYRTENPKAACLVFRSGKIVCT 69
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GA D A L LG P+ + NIV + D+ + L+AL + +
Sbjct: 70 GADSVEDVNTAIETLFDDLDDLGIPVPDDPNTTVQNIVSSADLGAALNLNALAIGLGLED 129
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YR+ P VV+L+F +G+IVITGA++ + A + +
Sbjct: 130 VEYEPEQFPGLVYRLDDPNVVVLMFGSGKIVITGAEAVVDAESALETV 177
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 92 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
++ N+V + +V + LD L S + Y+PE FPGL+YR P+ L+F +G+IV T
Sbjct: 11 EVQNVVASTEVTLELDLDRLSLDMSG-TDYDPENFPGLVYRTENPKAACLVFRSGKIVCT 69
Query: 152 GAKSRSELHEAFDNIYPVLKSF 173
GA S +++ A + ++ L
Sbjct: 70 GADSVEDVNTAIETLFDDLDDL 91
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ +P L F SGK++I G
Sbjct: 104 QNIVSSADLGAALNLNALAIGLGLEDVEYEPEQFPGLVYRLDDPNVVVLMFGSGKIVITG 163
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
A+ D + A +++LG
Sbjct: 164 AEAVVDAESALETVDGDVRELG 185
>gi|392522751|gb|AFM78164.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFK 92
+F +IM++ PR T L F SGK+ + G K H+ LAS+KFA I+ ++G P FK
Sbjct: 2 RFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDFK 61
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
+ N+V T DV FP +L+ L + HS F+SYEPELFPGLIYR+ +P+VV L+ V+
Sbjct: 62 VQNMVGTLDVGFPNRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVSVS 114
>gi|448568567|ref|ZP_21638101.1| transcription factor [Haloferax lucentense DSM 14919]
gi|445725917|gb|ELZ77535.1| transcription factor [Haloferax lucentense DSM 14919]
Length = 188
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + V LDL +++ + ++Y+P F GL+ + NP++ CL F+SGK++
Sbjct: 10 IEIQNVVASTEVPVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACLVFRSGKVVCT 69
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GA D A +LG PI + NIV + D+ + L+AL + +
Sbjct: 70 GADSVDDVSTAIETLFDEFTELGIPIPDDPDITVQNIVSSADLGAALNLNALAIGLGLEA 129
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YR+ +P VV+L+F +G+IVITGAK + A + +
Sbjct: 130 VEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVITGAKRVGDAEAALETV 177
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 91 FKIHNIVCTCDVRFPVKLDALH-HVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIV 149
+I N+V + +V PV+LD + + Y+PE FPGL+YR P+ L+F +G++V
Sbjct: 10 IEIQNVVASTEV--PVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACLVFRSGKVV 67
Query: 150 ITGAKSRSELHEAFDNIY 167
TGA S ++ A + ++
Sbjct: 68 CTGADSVDDVSTAIETLF 85
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGK++
Sbjct: 101 ITVQNIVSSADLGAALNLNALAIGLGLEAVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIV 160
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I GAK D + A +++LG
Sbjct: 161 ITGAKRVGDAEAALETVDDDVRELG 185
>gi|16517082|gb|AAL24503.1|AF418015_1 TATA box-binding protein-like protein [Crypthecodinium cohnii]
Length = 220
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 101/173 (58%), Gaps = 3/173 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
++ ++ C +DL Q+ +R++EYNP K L ++++ PR T + SG + I G
Sbjct: 47 TIMAKFNLRCEIDLRQLAFALRHAEYNPRKHSSLTLRLVEPRATAMVRSSGVVSITGVLD 106
Query: 65 EHDCKLASRKFAKILKQLGH---PIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
+ K +++K A+++++ G +K+ GF I +I+ + FP++LD L + + Y
Sbjct: 107 LDELKQSAKKVARLVQRSGEGHEKVKFAGFTICSILAKASMGFPIRLDQLAAKWRRNALY 166
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
EPEL+ G I+R +P+ L+ G+++I+G ++ ++HEA IYP+L FK
Sbjct: 167 EPELYCGCIFRTTRPKCTYLLTSGGKVMISGFRNMEDVHEAVQRIYPILAEFK 219
>gi|73668595|ref|YP_304610.1| transcription factor [Methanosarcina barkeri str. Fusaro]
gi|72395757|gb|AAZ70030.1| TATA binding protein of transcription factor TFIID [Methanosarcina
barkeri str. Fusaro]
Length = 184
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 97/173 (56%), Gaps = 10/173 (5%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + ++ DL +I +R+ +EYN KF GL+ + NP+ L F SGK++ GAK
Sbjct: 8 ENVVASTTLAEDFDLQKIEARLEKAEYNKAKFPGLVYRTENPKAAFLIFTSGKVVCTGAK 67
Query: 64 HEHDCKLASRKFAKILKQLG-HPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHS-QFSS 120
+ K+A A LK +G I + I NIV T D+ + L+ + +
Sbjct: 68 TVDNAKMAIINLASTLKSIGCEKINPEPDVHIQNIVATADLETNLNLNTIVIAFGMENVE 127
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA-------FDNI 166
YEPE+FPGL+YR+ PRVV+LIF +G++VITG KS + E FDN+
Sbjct: 128 YEPEVFPGLVYRLEDPRVVVLIFSSGKLVITGGKSPEDCEEGLRVIKKEFDNL 180
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+H QN+V T + L+LN I + EY P F GL+ ++ +PR L F SGKL+
Sbjct: 97 VHIQNIVATADLETNLNLNTIVIAFGMENVEYEPEVFPGLVYRLEDPRVVVLIFSSGKLV 156
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G K DC+ R K LG
Sbjct: 157 ITGGKSPEDCEEGLRVIKKEFDNLG 181
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
+ N+V + + L + + + Y FPGL+YR P+ LIF +G++V TG
Sbjct: 7 VENVVASTTLAEDFDLQKIE-ARLEKAEYNKAKFPGLVYRTENPKAAFLIFTSGKVVCTG 65
Query: 153 AKSRSELHEAFDNIYPVLKSF 173
AK+ A N+ LKS
Sbjct: 66 AKTVDNAKMAIINLASTLKSI 86
>gi|433425962|ref|ZP_20406798.1| transcription factor [Haloferax sp. BAB2207]
gi|448594544|ref|ZP_21652891.1| transcription factor [Haloferax alexandrinus JCM 10717]
gi|432197431|gb|ELK53812.1| transcription factor [Haloferax sp. BAB2207]
gi|445744180|gb|ELZ95659.1| transcription factor [Haloferax alexandrinus JCM 10717]
Length = 188
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + V LDL +++ + ++Y+P F GL+ + NP++ CL F+SGK++
Sbjct: 10 IEIQNVVASTEVPVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACLVFRSGKVVCT 69
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GA D A +LG PI + NIV + D+ + L+AL + +
Sbjct: 70 GADSVDDVSTAIETLFDEFTELGIPIPDDPDVTVQNIVSSADLGAALNLNALAIGLGLEA 129
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YR+ +P VV+L+F +G+IVITGAK + A + +
Sbjct: 130 VEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVITGAKRVGDAEAALETV 177
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 91 FKIHNIVCTCDVRFPVKLDALH-HVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIV 149
+I N+V + +V PV+LD + + Y+PE FPGL+YR P+ L+F +G++V
Sbjct: 10 IEIQNVVASTEV--PVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACLVFRSGKVV 67
Query: 150 ITGAKSRSELHEAFDNIY 167
TGA S ++ A + ++
Sbjct: 68 CTGADSVDDVSTAIETLF 85
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGK++
Sbjct: 101 VTVQNIVSSADLGAALNLNALAIGLGLEAVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIV 160
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I GAK D + A +++LG
Sbjct: 161 ITGAKRVGDAEAALETVDDDVRELG 185
>gi|8777979|gb|AAF79166.1| TATA-box binding protein 2 [Macrotrachela quadricornifera]
gi|8777981|gb|AAF79167.1| TATA-box binding protein 2 [Philodina roseola]
Length = 108
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 78/107 (72%)
Query: 12 VGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 71
+GCPLDL +I + R +EYNP +F +IM+I +PRTT L F SGK++ GAK E+ A
Sbjct: 1 LGCPLDLKRIALQARNAEYNPKRFAAVIMRIRSPRTTALIFGSGKMVCTGAKSENXSLQA 60
Query: 72 SRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 118
+R++A+++++LG P K++ FKI N+V + DV+FP++L+AL H QF
Sbjct: 61 ARRYARVIQKLGFPAKFRDFKIQNMVGSVDVKFPIRLEALVLKHYQF 107
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 114 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
+ ++ + Y P+ F +I R+ PR LIF +G++V TGAKS + +A
Sbjct: 12 LQARNAEYNPKRFAAVIMRIRSPRTTALIFGSGKMVCTGAKSENXSLQA 60
>gi|45357820|ref|NP_987377.1| transcription factor [Methanococcus maripaludis S2]
gi|340623439|ref|YP_004741892.1| transcription factor [Methanococcus maripaludis X1]
gi|56749680|sp|Q6M0L3.1|TBP_METMP RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|45047380|emb|CAF29813.1| TATA-binding protein (TBP) [Methanococcus maripaludis S2]
gi|339903707|gb|AEK19149.1| transcription factor [Methanococcus maripaludis X1]
Length = 181
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 98/173 (56%), Gaps = 3/173 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + +G +DL + +EY P +F GL+ ++ P+ L F+SGKL GA+
Sbjct: 9 NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSEPKVALLIFRSGKLNCTGARC 68
Query: 65 EHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ D +A K K LK+ G I K+ N+V T ++ LD + + + YEP
Sbjct: 69 KEDAVIAINKIVKELKEAGMDLIDNPEVKVQNMVATTELGMEPNLDDISTLEC--TEYEP 126
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
E FPGL+YR+ +P+VV+LIF +G++VITG K + + AFD I LK +++
Sbjct: 127 EQFPGLVYRLSEPKVVVLIFGSGKVVITGLKVIEDAYIAFDKISKTLKELEEE 179
>gi|194769912|ref|XP_001967045.1| GF21727 [Drosophila ananassae]
gi|190622840|gb|EDV38364.1| GF21727 [Drosophila ananassae]
Length = 1683
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 10/176 (5%)
Query: 5 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 60
N+V + SV C L L I S V Y N G++ MK+ +P TT + SG++
Sbjct: 1247 NVVCSFSVRCHLKLRDIALNGSNVEYRREN-----GMVTMKLRHPYTTASIWSSGRITCT 1301
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GA E K+A+R++A+ L +LG P ++Q F+I N++ TC + + +K+ H + +S
Sbjct: 1302 GATSEPMAKVAARRYARCLGKLGFPTRFQNFRIVNVLGTCSMPWAIKIVNFSERHRENAS 1361
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YEPEL PG+ Y+M P+ L IF G I +T A S +++ A +I+P++ F+KQ
Sbjct: 1362 YEPELHPGVTYKMRDPKATLKIFSTGSITVTAA-SVNDVEAAIQHIFPLVFEFRKQ 1416
>gi|70607094|ref|YP_255964.1| transcription factor [Sulfolobus acidocaldarius DSM 639]
gi|68567742|gb|AAY80671.1| TATA-binding protein [Sulfolobus acidocaldarius DSM 639]
Length = 166
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 89/140 (63%), Gaps = 2/140 (1%)
Query: 29 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKY 88
EY+P +F GLI ++ +P+ T L F+SGK+++ GAK + A ++ K LK+ G +
Sbjct: 9 EYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKKYGMQLTG 68
Query: 89 Q-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGR 147
+ +I NIV + ++ V LD + + YEPE FPGLIYRM +PRVVLLIF +G+
Sbjct: 69 KPKIQIQNIVASANLHVIVNLDKAAFLLEN-NMYEPEQFPGLIYRMDEPRVVLLIFSSGK 127
Query: 148 IVITGAKSRSELHEAFDNIY 167
+VITGAK E+H+A I+
Sbjct: 128 MVITGAKREDEVHKAVKKIF 147
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
Y+P+ FPGLI+R+ P++ LIF +G++V+TGAKS EL +A I LK + Q
Sbjct: 9 EYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKKYGMQ 65
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ ++L++ + + Y P +F GLI ++ PR L F SGK++I
Sbjct: 72 IQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVIT 131
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GAK E + A +K L +L
Sbjct: 132 GAKREDEVHKAVKKIFDKLVEL 153
>gi|15668684|ref|NP_247483.1| transcription factor [Methanocaldococcus jannaschii DSM 2661]
gi|2833518|sp|Q57930.1|TBP_METJA RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|1591210|gb|AAB98497.1| transcription initiation factor IID, TATA-box binding protein
[Methanocaldococcus jannaschii DSM 2661]
Length = 183
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 99/172 (57%), Gaps = 2/172 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + +G +DL ++ + +EY P +F GL+ ++ P+ L F+SGK+ GAK
Sbjct: 12 NVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKS 71
Query: 65 EHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ + ++A +K K LK G I+ KI N+V T D+ LD + + + + YEP
Sbjct: 72 KEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIA-LMVEGTEYEP 130
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
E FPGL+YR+ P+VV+LIF +G++VITG KS + A I +K ++
Sbjct: 131 EQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALKKILDTIKEVQE 182
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV T +G +L+ I V +EY P +F GL+ ++ +P+ L F SGK++I
Sbjct: 99 IKIQNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVIT 158
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
G K E D K A +K +K++
Sbjct: 159 GLKSEEDAKRALKKILDTIKEV 180
>gi|197305019|pdb|2Z8U|A Chain A, Methanococcus Jannaschii Tbp
gi|197305020|pdb|2Z8U|B Chain B, Methanococcus Jannaschii Tbp
gi|197305021|pdb|2Z8U|P Chain P, Methanococcus Jannaschii Tbp
gi|197305022|pdb|2Z8U|Q Chain Q, Methanococcus Jannaschii Tbp
Length = 188
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 99/172 (57%), Gaps = 2/172 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + +G +DL ++ + +EY P +F GL+ ++ P+ L F+SGK+ GAK
Sbjct: 17 NVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKS 76
Query: 65 EHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ + ++A +K K LK G I+ KI N+V T D+ LD + + + + YEP
Sbjct: 77 KEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIA-LMVEGTEYEP 135
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
E FPGL+YR+ P+VV+LIF +G++VITG KS + A I +K ++
Sbjct: 136 EQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALKKILDTIKEVQE 187
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV T +G +L+ I V +EY P +F GL+ ++ +P+ L F SGK++I
Sbjct: 104 IKIQNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVIT 163
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
G K E D K A +K +K++
Sbjct: 164 GLKSEEDAKRALKKILDTIKEV 185
>gi|296109497|ref|YP_003616446.1| TATA-box binding family protein [methanocaldococcus infernus ME]
gi|295434311|gb|ADG13482.1| TATA-box binding family protein [Methanocaldococcus infernus ME]
Length = 187
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + + +DL ++ + +EY P +F GL+ ++ +P+ L F+SGK+ GAK
Sbjct: 8 NVVVSTKIADSIDLEEVALVLENAEYEPEQFPGLVCRLNDPKVALLMFRSGKVNCTGAKS 67
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ + + A +K K LK G + K+ N+V T D+ F L+ + ++ + YEP
Sbjct: 68 KEEAERAIKKIIKELKDAGFDVNENPEIKVQNMVATADLGFEPDLNEIA-IYVDETEYEP 126
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
E FPGL+YR+ P+VV+LIF +G++VITG KS + +A + I ++ ++
Sbjct: 127 EQFPGLVYRLNDPKVVVLIFGSGKVVITGLKSEEDAKKALEKIKETIREIQE 178
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV T +G DLN+I V +EY P +F GL+ ++ +P+ L F SGK++I
Sbjct: 95 IKVQNMVATADLGFEPDLNEIAIYVDETEYEPEQFPGLVYRLNDPKVVVLIFGSGKVVIT 154
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
G K E D K A K + ++++
Sbjct: 155 GLKSEEDAKKALEKIKETIREI 176
>gi|158285534|ref|XP_308361.4| AGAP007517-PA [Anopheles gambiae str. PEST]
gi|157020038|gb|EAA04678.5| AGAP007517-PA [Anopheles gambiae str. PEST]
Length = 553
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 58/173 (33%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 63
N+V + SV C L+L+ I E+ + HG++ MK+ P TT + SGK+ GA
Sbjct: 258 NVVCSFSVRCHLNLHDIARHGHNVEFR--REHGMVTMKLRRPYTTASIWSSGKITCTGAT 315
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
EH K+A+R++++ L++LG ++++ F+I N++ TC + F + + + + +SYEP
Sbjct: 316 SEHQAKIAARRYSRCLQKLGFNVRFRNFRIVNVLGTCSMPFGIMIVNFSEKYKKDASYEP 375
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EL PG+ Y++ P+ L IF G I +T A S + + A + I+P++ F+K+
Sbjct: 376 ELHPGVTYKLYSPKATLKIFSTGSITVTAA-SVAFVQAAIEQIFPLVYEFRKK 427
>gi|448577353|ref|ZP_21642983.1| transcription factor [Haloferax larsenii JCM 13917]
gi|445727998|gb|ELZ79607.1| transcription factor [Haloferax larsenii JCM 13917]
Length = 188
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 99/180 (55%), Gaps = 12/180 (6%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + +VG LDL ++ V +E+NP F GL+ + +PR L F+SGK++
Sbjct: 10 LEIQNVVASSAVGLELDLESLSDDVPGAEFNPDNFPGLVYRTQDPRAANLIFRSGKIVCT 69
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIK-YQGFKIHNIVCTCDVRFPVKLDA------LHH 113
GA + A + + L LG PI + + NIV + D+ + L+A L H
Sbjct: 70 GASSVDEVNQALEQVFEELGSLGIPIDGREEATVQNIVSSADLGTTLNLNALAIGLGLEH 129
Query: 114 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
V YEPE FPGL+YR+ +P VV+L+F +G+IVITGAK EA + + ++S
Sbjct: 130 VE-----YEPEQFPGLVYRIDEPNVVVLLFGSGKIVITGAKKVEYAREAINVVSDEIESL 184
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + + EY P +F GL+ +I P L F SGK++I G
Sbjct: 104 QNIVSSADLGTTLNLNALAIGLGLEHVEYEPEQFPGLVYRIDEPNVVVLLFGSGKIVITG 163
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
AK + A + ++ LG
Sbjct: 164 AKKVEYAREAINVVSDEIESLG 185
>gi|315231074|ref|YP_004071510.1| TATA-box binding protein [Thermococcus barophilus MP]
gi|315184102|gb|ADT84287.1| TATA-box binding protein [Thermococcus barophilus MP]
Length = 190
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 103/178 (57%), Gaps = 9/178 (5%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V ++ + LDL ++ S+YNP +F G+I + P+ L F SGKL++
Sbjct: 9 LRIENIVASVDLFTQLDLEKVIEICPNSKYNPEEFPGIICRFDEPKVALLVFSSGKLVVT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ---GFKIHNIVCTCDVRFPVKLDALHHVHSQ 117
GAK D + A K ++L ++G K+Q I N+V + D+ LDA+ V
Sbjct: 69 GAKSVEDIERAVSKLVQMLSKIGT--KFQRAPQIDIQNMVFSGDIGMEFNLDAVALVLPN 126
Query: 118 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPE FPG+IYR+ +PR V+L+F +G+IV +GAKS H+A++ + +L+ +K
Sbjct: 127 -CEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAKSE---HDAWEAVRKLLRELEK 180
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV + +G +L+ + + EY P +F G+I ++ PR L F SGK++
Sbjct: 100 IDIQNMVFSGDIGMEFNLDAVALVLPNCEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCS 159
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK EHD A RK + L++ G
Sbjct: 160 GAKSEHDAWEAVRKLLRELEKYG 182
>gi|256810655|ref|YP_003128024.1| transcription factor [Methanocaldococcus fervens AG86]
gi|256793855|gb|ACV24524.1| TATA-box binding family protein [Methanocaldococcus fervens AG86]
Length = 180
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 99/172 (57%), Gaps = 2/172 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + +G +DL ++ + +EY P +F GL+ ++ P+ L F+SGK+ GAK
Sbjct: 9 NVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKS 68
Query: 65 EHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ + ++A +K K LK G I+ KI N+V T D+ LD + + + + YEP
Sbjct: 69 KEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIA-LMVEGTEYEP 127
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
E FPGL+YR+ P+VV+LIF +G++VITG KS + A I ++ ++
Sbjct: 128 EQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALKKILDTIREVQE 179
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV T +G +L+ I V +EY P +F GL+ ++ +P+ L F SGK++I
Sbjct: 96 IKIQNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVIT 155
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
G K E D K A +K ++++
Sbjct: 156 GLKSEEDAKRALKKILDTIREV 177
>gi|448621885|ref|ZP_21668634.1| transcription factor [Haloferax denitrificans ATCC 35960]
gi|445754915|gb|EMA06309.1| transcription factor [Haloferax denitrificans ATCC 35960]
Length = 188
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 95/168 (56%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + V LDL +++ + ++Y+P F GL+ + +P++ CL F+SGK++
Sbjct: 10 IEIQNVVASTEVPLELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACLVFRSGKIVCT 69
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GA D A LG PI + + NIV + D+ + L+AL + +
Sbjct: 70 GANSVGDVSTAIETLFGEFADLGVPIPDEPDITVQNIVSSADLGAALNLNALAIGLGLEA 129
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YR+ +P VV+L+F +G+IVITGAK ++ A + +
Sbjct: 130 VEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVITGAKQVADAEAALETV 177
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I N+V + +V + L+ L + + Y+PE FPGL+YR P+ L+F +G+IV
Sbjct: 10 IEIQNVVASTEVPLELDLERLS-LDMDGTDYDPENFPGLVYRTRDPKSACLVFRSGKIVC 68
Query: 151 TGAKSRSELHEAFDNIY 167
TGA S ++ A + ++
Sbjct: 69 TGANSVGDVSTAIETLF 85
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGK++
Sbjct: 101 ITVQNIVSSADLGAALNLNALAIGLGLEAVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIV 160
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I GAK D + A + +++LG
Sbjct: 161 ITGAKQVADAEAALETVDEDVRELG 185
>gi|167042577|gb|ABZ07300.1| putative transcription factor TFIID (or TATA-binding protein, TBP)
[uncultured marine crenarchaeote HF4000_ANIW133I6]
Length = 186
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + SV +DLN+I + EY+P +F GL+ +I +P+T L F SGK++ GAK
Sbjct: 11 ENVVASASVDQRMDLNEITRKFADVEYHPDQFPGLVFRIKSPKTATLIFSSGKMVCTGAK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGF-KIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E + A + + L++ G IK I NIV + ++ + L+ + S YE
Sbjct: 71 SETMSRKAVKLVVQQLRKGGIKIKKDAVVTIQNIVASINLGGRIHLEQAARTLPR-SMYE 129
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
PE FPGLI+RMV P+ V+L+F +G++V TGAK +++ + +N++ +L+ K
Sbjct: 130 PEQFPGLIHRMVDPKTVILLFSSGKLVCTGAKKEPDVYRSVNNLHSLLEEKK 181
>gi|167042151|gb|ABZ06885.1| putative transcription factor TFIID (or TATA-binding protein, TBP)
[uncultured marine crenarchaeote HF4000_ANIW93E5]
Length = 186
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + SV +DLN+I + EY+P +F GL+ +I +P+T L F SGK++ GAK
Sbjct: 11 ENVVASASVDQRMDLNEITRKFADVEYHPDQFPGLVFRIKSPKTATLIFSSGKMVCTGAK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGF-KIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E + A + + L++ G IK I NIV + ++ + L+ + S YE
Sbjct: 71 SETMSRKAVKLVVQQLRKGGIKIKKDAVVTIQNIVASINLGGRIHLEQAARTLPR-SMYE 129
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
PE FPGLI+RMV P+ V+L+F +G++V TGAK +++ + +N++ +L+ K
Sbjct: 130 PEQFPGLIHRMVDPKTVILLFSSGKLVCTGAKKEPDVYRSVNNLHSLLEEKK 181
>gi|146304491|ref|YP_001191807.1| transcription factor [Metallosphaera sedula DSM 5348]
gi|145702741|gb|ABP95883.1| TATA binding protein of transcription factor TFIID [Metallosphaera
sedula DSM 5348]
Length = 176
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 97/161 (60%), Gaps = 6/161 (3%)
Query: 16 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 75
LDL + V EY+P +F GLI ++ +P+ T L F+SGK+++ GAK + A ++
Sbjct: 5 LDLYAMERSVPNVEYDPDQFPGLIFRLESPKVTSLIFKSGKMVVTGAKSTEELIKAVKRI 64
Query: 76 AKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYR 132
K L++ G I+ G +I NIV + ++ V LD + + YEPE FPGLI+R
Sbjct: 65 IKSLRRYG--IRIGGKPKIQIQNIVASANMHVHVNLDKAAFLLEN-NMYEPEQFPGLIFR 121
Query: 133 MVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
M +PRVVLLIF +G++VITGAK E+++A I+ L+
Sbjct: 122 MDEPRVVLLIFSSGKMVITGAKREDEVYKAVKKIFDKLEEL 162
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ ++L++ + + Y P +F GLI ++ PR L F SGK++I
Sbjct: 81 IQIQNIVASANMHVHVNLDKAAFLLENNMYEPEQFPGLIFRMDEPRVVLLIFSSGKMVIT 140
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GAK E + A +K L++L
Sbjct: 141 GAKREDEVYKAVKKIFDKLEEL 162
>gi|345312931|ref|XP_001513505.2| PREDICTED: TATA box-binding protein-like protein 2-like
[Ornithorhynchus anatinus]
Length = 170
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 87/158 (55%), Gaps = 26/158 (16%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++ C LDL +I + R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 19 QLQNIVSTVNLACKLDLKRIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 78
Query: 62 AKHEH-------DCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHV 114
++ D + R A F+ + V R P + D
Sbjct: 79 SQKRPTGNVFLVDARDGDRALATF-----------SFRDVSTVKISLSRPPDRDD----- 122
Query: 115 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
+YEPELFPGLIYRMVKPR+VLLIFV+G++V+TG
Sbjct: 123 ---IPTYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTG 157
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 92 KIHNIVCTCDVRFPVKLDALH-HVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
++ NIV T V KLD + ++ + Y P+ F +I R+ +PR LIF +G++V
Sbjct: 19 QLQNIVST--VNLACKLDLKRIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 76
Query: 151 TGAKSR 156
TG++ R
Sbjct: 77 TGSQKR 82
>gi|427787417|gb|JAA59160.1| Hypothetical protein [Rhipicephalus pulchellus]
Length = 321
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 100/173 (57%), Gaps = 4/173 (2%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHG-LIMKILNPRTTCLAFQSGKLLILGAK 63
N+V + SV C L+L QI EY + +G L MKI P TT + SGK+ GA
Sbjct: 86 NVVCSFSVRCHLNLRQIALTASNVEYR--RENGMLTMKIRTPYTTASMWSSGKVTCTGAT 143
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E KLA+R++A+IL++LG +K+ +++ N++ TC + F +KL + +SYEP
Sbjct: 144 SEETAKLAARRYARILQKLGFRVKFMNYRVVNVLGTCTMPFAIKLIPFSQSNRPIASYEP 203
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EL PG+ Y++ + L IF G I +T A S + + A + I+P++ ++K+
Sbjct: 204 ELHPGVTYKIKDLKATLKIFSTGSITVT-APSVANVQSAIEQIFPLVYEYRKE 255
>gi|15921539|ref|NP_377208.1| transcription factor [Sulfolobus tokodaii str. 7]
Length = 166
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 87/140 (62%), Gaps = 2/140 (1%)
Query: 29 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKY 88
EY+P +F GLI ++ P+ T L F+SGK+++ GAK + A ++ K LK+ G +
Sbjct: 9 EYDPDQFPGLIFRLEAPKVTSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKRYGMNLTG 68
Query: 89 Q-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGR 147
+ +I NIV + ++ V LD + + YEPE FPGLIYRM PRVVLLIF +G+
Sbjct: 69 KPKIQIQNIVASANLHVIVNLDKAAFLLEN-NMYEPEQFPGLIYRMEDPRVVLLIFSSGK 127
Query: 148 IVITGAKSRSELHEAFDNIY 167
+VITGAK E+H+A I+
Sbjct: 128 MVITGAKREEEVHKAVKKIF 147
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
Y+P+ FPGLI+R+ P+V LIF +G++V+TGAKS EL +A I LK +
Sbjct: 9 EYDPDQFPGLIFRLEAPKVTSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKRY 62
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ ++L++ + + Y P +F GLI ++ +PR L F SGK++I
Sbjct: 72 IQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMEDPRVVLLIFSSGKMVIT 131
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GAK E + A +K L +L
Sbjct: 132 GAKREEEVHKAVKKIFDKLVEL 153
>gi|292494314|ref|YP_003533457.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|448289408|ref|ZP_21480579.1| transcription factor [Haloferax volcanii DS2]
gi|291369097|gb|ADE01327.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|445582489|gb|ELY36830.1| transcription factor [Haloferax volcanii DS2]
Length = 188
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + V LDL +++ + ++Y+P F GL+ + NP++ CL F+SGK++
Sbjct: 10 IEIQNVVASTEVPVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACLVFRSGKVVCT 69
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GA D A +LG PI + NIV + D+ + L+AL + +
Sbjct: 70 GADSVDDVSTAIETLFDEFTELGIPIPDDPDITVQNIVSSADLGAALNLNALAIGLGLEA 129
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YR+ +P VV+L+F +G+IVITG K + A + +
Sbjct: 130 VEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVITGVKRVGDAETALETV 177
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 91 FKIHNIVCTCDVRFPVKLDALH-HVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIV 149
+I N+V + +V PV+LD + + Y+PE FPGL+YR P+ L+F +G++V
Sbjct: 10 IEIQNVVASTEV--PVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACLVFRSGKVV 67
Query: 150 ITGAKSRSELHEAFDNIY 167
TGA S ++ A + ++
Sbjct: 68 CTGADSVDDVSTAIETLF 85
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGK++
Sbjct: 101 ITVQNIVSSADLGAALNLNALAIGLGLEAVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIV 160
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G K D + A +++LG
Sbjct: 161 ITGVKRVGDAETALETVDDDVRELG 185
>gi|442615484|ref|NP_001259329.1| TATA box binding protein-related factor 2, isoform I [Drosophila
melanogaster]
gi|440216531|gb|AGB95174.1| TATA box binding protein-related factor 2, isoform I [Drosophila
melanogaster]
Length = 1714
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 64/178 (35%), Positives = 102/178 (57%), Gaps = 12/178 (6%)
Query: 5 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 60
N+V + SVGC L L +I S V Y N G++ MK+ +P TT + SG++
Sbjct: 1288 NVVCSFSVGCHLKLREIALQGSNVEYRREN-----GMVTMKLRHPYTTASIWSSGRITCT 1342
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GA E K+A+R++A+ L +LG P ++ F+I N++ TC + + +K+ H + +S
Sbjct: 1343 GATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENAS 1402
Query: 121 YEPELFPGLIYRM--VKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YEPEL PG+ Y+M P+ L IF G + +T A S + + A +IYP++ F+KQ
Sbjct: 1403 YEPELHPGVTYKMRDPDPKATLKIFSTGSVTVTAA-SVNHVESAIQHIYPLVFDFRKQ 1459
>gi|24640580|ref|NP_511084.2| TATA box binding protein-related factor 2, isoform J [Drosophila
melanogaster]
gi|45554500|ref|NP_996377.1| TATA box binding protein-related factor 2, isoform H [Drosophila
melanogaster]
gi|17862444|gb|AAL39699.1| LD27895p [Drosophila melanogaster]
gi|22831945|gb|AAF46368.2| TATA box binding protein-related factor 2, isoform J [Drosophila
melanogaster]
gi|45446857|gb|AAF46369.3| TATA box binding protein-related factor 2, isoform H [Drosophila
melanogaster]
Length = 632
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 64/178 (35%), Positives = 102/178 (57%), Gaps = 12/178 (6%)
Query: 5 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 60
N+V + SVGC L L +I S V Y N G++ MK+ +P TT + SG++
Sbjct: 206 NVVCSFSVGCHLKLREIALQGSNVEYRREN-----GMVTMKLRHPYTTASIWSSGRITCT 260
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GA E K+A+R++A+ L +LG P ++ F+I N++ TC + + +K+ H + +S
Sbjct: 261 GATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENAS 320
Query: 121 YEPELFPGLIYRM--VKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YEPEL PG+ Y+M P+ L IF G + +T A S + + A +IYP++ F+KQ
Sbjct: 321 YEPELHPGVTYKMRDPDPKATLKIFSTGSVTVTAA-SVNHVESAIQHIYPLVFDFRKQ 377
>gi|4741972|gb|AAD28784.1|AF136569_1 TATA box binding protein-related factor 2 [Drosophila melanogaster]
Length = 632
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 64/178 (35%), Positives = 102/178 (57%), Gaps = 12/178 (6%)
Query: 5 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 60
N+V + SVGC L L +I S V Y N G++ MK+ +P TT + SG++
Sbjct: 206 NVVCSFSVGCHLKLREIALQGSNVEYRREN-----GMVTMKLRHPYTTASIWSSGRITCT 260
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GA E K+A+R++A+ L +LG P ++ F+I N++ TC + + +K+ H + +S
Sbjct: 261 GATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENAS 320
Query: 121 YEPELFPGLIYRM--VKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YEPEL PG+ Y+M P+ L IF G + +T A S + + A +IYP++ F+KQ
Sbjct: 321 YEPELHPGVTYKMRDPDPKATLKIFSTGSVTVTAA-SVNHVESAIQHIYPLVFDFRKQ 377
>gi|161077628|ref|NP_001096905.1| TATA box binding protein-related factor 2, isoform E [Drosophila
melanogaster]
gi|281360601|ref|NP_001162701.1| TATA box binding protein-related factor 2, isoform F [Drosophila
melanogaster]
gi|442615486|ref|NP_001259330.1| TATA box binding protein-related factor 2, isoform G [Drosophila
melanogaster]
gi|76446337|gb|ABA42953.1| TRF2 [Drosophila melanogaster]
gi|158031744|gb|ABW09355.1| TATA box binding protein-related factor 2, isoform E [Drosophila
melanogaster]
gi|272506032|gb|ACZ95236.1| TATA box binding protein-related factor 2, isoform F [Drosophila
melanogaster]
gi|440216532|gb|AGB95175.1| TATA box binding protein-related factor 2, isoform G [Drosophila
melanogaster]
Length = 1715
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 64/178 (35%), Positives = 102/178 (57%), Gaps = 12/178 (6%)
Query: 5 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 60
N+V + SVGC L L +I S V Y N G++ MK+ +P TT + SG++
Sbjct: 1289 NVVCSFSVGCHLKLREIALQGSNVEYRREN-----GMVTMKLRHPYTTASIWSSGRITCT 1343
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GA E K+A+R++A+ L +LG P ++ F+I N++ TC + + +K+ H + +S
Sbjct: 1344 GATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENAS 1403
Query: 121 YEPELFPGLIYRM--VKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YEPEL PG+ Y+M P+ L IF G + +T A S + + A +IYP++ F+KQ
Sbjct: 1404 YEPELHPGVTYKMRDPDPKATLKIFSTGSVTVTAA-SVNHVESAIQHIYPLVFDFRKQ 1460
>gi|4688680|emb|CAB41475.1| TBP-like factor [Drosophila melanogaster]
Length = 537
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 64/178 (35%), Positives = 102/178 (57%), Gaps = 12/178 (6%)
Query: 5 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 60
N+V + SVGC L L +I S V Y N G++ MK+ +P TT + SG++
Sbjct: 111 NVVCSFSVGCHLKLREIALQGSNVEYRREN-----GMVTMKLRHPYTTASIWSSGRITCT 165
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GA E K+A+R++A+ L +LG P ++ F+I N++ TC + + +K+ H + +S
Sbjct: 166 GATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENAS 225
Query: 121 YEPELFPGLIYRM--VKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YEPEL PG+ Y+M P+ L IF G + +T A S + + A +IYP++ F+KQ
Sbjct: 226 YEPELHPGVTYKMRDPDPKATLKIFSTGSVTVTAA-SVNHVESAIQHIYPLVFDFRKQ 282
>gi|448591939|ref|ZP_21651314.1| transcription factor [Haloferax elongans ATCC BAA-1513]
gi|445733228|gb|ELZ84803.1| transcription factor [Haloferax elongans ATCC BAA-1513]
Length = 188
Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 95/165 (57%), Gaps = 2/165 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + + LDL ++ + +EYNP F GL+ + +P++ CL F+SGK++
Sbjct: 10 IEIQNVVASTGIEQELDLKSLSLDMAGTEYNPDNFPGLVYRTSDPKSACLVFRSGKIVCT 69
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GA A + L LG P+ + + NIV + D+R + L+AL + +
Sbjct: 70 GADSVEGVHAALDILFEELSDLGIPLPDEPEITVQNIVSSADLRSNLNLNALAIGLGLED 129
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAF 163
YEPE FPGL+YR+ +P VV+L+F +G++VITGAK ++ EA
Sbjct: 130 VEYEPEQFPGLVYRLEEPSVVVLMFGSGKVVITGAKEVAQAEEAI 174
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ +I N+V + + + L +L + + Y P+ FPGL+YR P+ L+F +G+I
Sbjct: 8 ESIEIQNVVASTGIEQELDLKSLS-LDMAGTEYNPDNFPGLVYRTSDPKSACLVFRSGKI 66
Query: 149 VITGAKSRSELHEAFDNIYPVLKSF 173
V TGA S +H A D ++ L
Sbjct: 67 VCTGADSVEGVHAALDILFEELSDL 91
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + + L+LN I + EY P +F GL+ ++ P L F SGK++
Sbjct: 101 ITVQNIVSSADLRSNLNLNALAIGLGLEDVEYEPEQFPGLVYRLEEPSVVVLMFGSGKVV 160
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I GAK + A + +++LG
Sbjct: 161 ITGAKEVAQAEEAIKVVRDEVQKLG 185
>gi|159905083|ref|YP_001548745.1| transcription factor [Methanococcus maripaludis C6]
gi|226703561|sp|A9A840.1|TBP_METM6 RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|159886576|gb|ABX01513.1| TATA-box binding family protein [Methanococcus maripaludis C6]
Length = 181
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 98/173 (56%), Gaps = 3/173 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + +G +DL + +EY P +F GL+ ++ P+ L F+SGKL GAK
Sbjct: 9 NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSEPKVALLIFRSGKLNCTGAKC 68
Query: 65 EHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ D +A K K LK+ G I + N+V T ++ LD + + + + YEP
Sbjct: 69 KEDAVIAIHKIIKELKEAGMDLIDNPEVNVQNMVATTELGMEPNLDDISTL--ECTEYEP 126
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
E FPGL+YR+ P+VV+LIF +G++VITG K + ++A+D I LK +++
Sbjct: 127 EQFPGLVYRLSDPKVVVLIFGSGKVVITGLKVIEDAYKAYDKISKTLKELEEE 179
>gi|448567600|ref|ZP_21637525.1| transcription factor [Haloferax prahovense DSM 18310]
gi|445711598|gb|ELZ63388.1| transcription factor [Haloferax prahovense DSM 18310]
Length = 188
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + V LDL +++ + ++Y+P F GL+ + +P++ CL F+SGK++
Sbjct: 10 IEIQNVVASTEVPVELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACLVFRSGKIVCT 69
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GA D A LG P+ + NIV + D+ + L+AL + +
Sbjct: 70 GADSVDDVSTAIETLFDEFTDLGVPVPEDADITVQNIVSSADLGEALNLNALAIGLGLEA 129
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YR+ +P VV+L+F +G+IVITGAK ++ A +
Sbjct: 130 VEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVITGAKRTADAEAALKTV 177
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 91 FKIHNIVCTCDVRFPVKLDALH-HVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIV 149
+I N+V + +V PV+LD + + Y+PE FPGL+YR P+ L+F +G+IV
Sbjct: 10 IEIQNVVASTEV--PVELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACLVFRSGKIV 67
Query: 150 ITGAKSRSELHEAFDNIY 167
TGA S ++ A + ++
Sbjct: 68 CTGADSVDDVSTAIETLF 85
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGK++
Sbjct: 101 ITVQNIVSSADLGEALNLNALAIGLGLEAVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIV 160
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I GAK D + A + + +++LG
Sbjct: 161 ITGAKRTADAEAALKTVDEDVRELG 185
>gi|134046443|ref|YP_001097928.1| transcription factor [Methanococcus maripaludis C5]
gi|132664068|gb|ABO35714.1| TATA binding protein of transcription factor TFIID [Methanococcus
maripaludis C5]
Length = 181
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 98/173 (56%), Gaps = 3/173 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + +G +DL + +EY P +F GL+ ++ +P+ L F+SGKL GAK
Sbjct: 9 NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTGAKC 68
Query: 65 EHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ D +A K K LK+ G I + N+V T ++ LD + + + + YEP
Sbjct: 69 KEDAVIAINKITKELKEAGMDLIDNPEVNVQNMVATTELGMEPNLDDISTL--ECTEYEP 126
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
E FPGL+YR+ P+VV+LIF +G++VITG K + + A++ I LK +++
Sbjct: 127 EQFPGLVYRLSDPKVVVLIFGSGKVVITGLKVIEDAYRAYEKISKTLKELEEE 179
>gi|448610758|ref|ZP_21661425.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
gi|445744442|gb|ELZ95920.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
Length = 188
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 2/166 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + V LDL++++ + ++Y+P F GL+ + +P+ CL F+SGK++
Sbjct: 10 VEVQNVVASTEVSFELDLDRLSLDMSSTDYDPENFPGLVYRTHDPKAACLVFRSGKIVCT 69
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GA D A L LG P+ I NIV + D+ + L+AL + +
Sbjct: 70 GADSVTDVNAAIETLFDELDSLGVPVPDDPSPTIQNIVSSADLGGALNLNALAIGLGLEA 129
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFD 164
YEPE FPGL+YR+ +P VV+L+F +G+IVITGA++ ++ A +
Sbjct: 130 VEYEPEQFPGLVYRLDEPNVVILMFGSGKIVITGAEAVADAESALE 175
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 92 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
++ N+V + +V F + LD L S + Y+PE FPGL+YR P+ L+F +G+IV T
Sbjct: 11 EVQNVVASTEVSFELDLDRLSLDMSS-TDYDPENFPGLVYRTHDPKAACLVFRSGKIVCT 69
Query: 152 GAKSRSELHEAFDNIYPVLKSF 173
GA S ++++ A + ++ L S
Sbjct: 70 GADSVTDVNAAIETLFDELDSL 91
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGK++I G
Sbjct: 104 QNIVSSADLGGALNLNALAIGLGLEAVEYEPEQFPGLVYRLDEPNVVILMFGSGKIVITG 163
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
A+ D + A +++LG
Sbjct: 164 AEAVADAESALEVVDSDVRELG 185
>gi|448603976|ref|ZP_21657400.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|445744772|gb|ELZ96244.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
Length = 188
Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 95/168 (56%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + V LDL +++ + ++Y+P F GL+ + +P++ CL F+SGK++
Sbjct: 10 IEIQNVVASTEVPLELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACLVFRSGKIVCT 69
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GA D A LG PI + + NIV + D+ + L+AL + +
Sbjct: 70 GANSVGDVSTAIETLFGEFADLGVPIPDEPDITVQNIVSSADLGAALNLNALAIGLGLEA 129
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YR+ +P VV+L+F +G+IVITGAK ++ A + +
Sbjct: 130 VEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVITGAKRVADAEAALETV 177
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I N+V + +V + L+ L + + Y+PE FPGL+YR P+ L+F +G+IV
Sbjct: 10 IEIQNVVASTEVPLELDLERLS-LDMDGTDYDPENFPGLVYRTRDPKSACLVFRSGKIVC 68
Query: 151 TGAKSRSELHEAFDNIY 167
TGA S ++ A + ++
Sbjct: 69 TGANSVGDVSTAIETLF 85
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGK++
Sbjct: 101 ITVQNIVSSADLGAALNLNALAIGLGLEAVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIV 160
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I GAK D + A + +++LG
Sbjct: 161 ITGAKRVADAEAALETVDEDVRELG 185
>gi|195114322|ref|XP_002001716.1| GI15474 [Drosophila mojavensis]
gi|193912291|gb|EDW11158.1| GI15474 [Drosophila mojavensis]
Length = 442
Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 100/176 (56%), Gaps = 10/176 (5%)
Query: 5 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 60
N+V + SV C L L +I S V Y N G++ M++ P TT + SG++
Sbjct: 95 NVVCSFSVRCHLKLREIALHGSNVEYRREN-----GMVTMRLRRPYTTASIWSSGRITCT 149
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GA E K+A+R++A+ L +LG P+++Q F+I N++ TC + +P+++ H + +
Sbjct: 150 GAISESQAKVAARRYARSLSKLGFPVRFQQFRIVNVLGTCSMPWPIRIVNFSERHRESAC 209
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YEPEL PG+ ++M P+ L IF G I +T A S + + A +YP++ F+ +
Sbjct: 210 YEPELHPGVTFKMQDPKATLKIFSTGSITVTAA-SVNAVESAIQRLYPLVHEFRTR 264
>gi|150403180|ref|YP_001330474.1| transcription factor [Methanococcus maripaludis C7]
gi|166227820|sp|A6VIP7.1|TBP_METM7 RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|150034210|gb|ABR66323.1| TATA-box binding [Methanococcus maripaludis C7]
Length = 181
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 97/173 (56%), Gaps = 3/173 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + +G +DL + +EY P +F GL+ ++ +P+ L F+SGKL GAK
Sbjct: 9 NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTGAKS 68
Query: 65 EHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ D +A K K L++ G I + N+V T ++ LD + + + YEP
Sbjct: 69 KDDAVIAINKIIKELQEAGMDIIDNPEVNVQNMVATTELGMEPNLDDISTLEC--TEYEP 126
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
E FPGL+YR+ P+VV+LIF +G++VITG K + + AF+ I LK +++
Sbjct: 127 EQFPGLVYRLSDPKVVVLIFGSGKVVITGLKRIDDAYVAFNKILTTLKELEEE 179
>gi|19073311|gb|AAL84756.1|AF469636_1 TATA binding protein D [Halobacterium sp. GN101]
Length = 186
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 100/175 (57%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+H +N+V + ++G L L Q+ + + ++YNP +F G+I ++ +P +T L F SGK +
Sbjct: 8 IHIENVVASSTLGAELALEQLAADLPGADYNPEEFPGVIYRLDDPPSTTLIFDSGKAVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GA+ D A + L++LG I + NIVC+ D+ P+ L+A+ + +
Sbjct: 68 GAQTVDDVHEALSIVVEDLRELGIDIAADPPVDVQNIVCSADLDQPLNLNAIAIGLGLEA 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P VV+L+F +G++VITG + A ++++ L
Sbjct: 128 IEYEPEQFPGLVYRLDDPDVVVLLFGSGKLVITGGSDPDDATVALEDVHDRLTDL 182
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + + PL+LN I + EY P +F GL+ ++ +P L F SGKL+
Sbjct: 99 VDVQNIVCSADLDQPLNLNAIAIGLGLEAIEYEPEQFPGLVYRLDDPDVVVLLFGSGKLV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G D +A L LG
Sbjct: 159 ITGGSDPDDATVALEDVHDRLTDLG 183
>gi|350399828|ref|XP_003485652.1| PREDICTED: TATA box-binding protein-like protein 1-like [Bombus
impatiens]
Length = 290
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 103/177 (58%), Gaps = 10/177 (5%)
Query: 4 QNMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLI 59
N+V + SV C L+L +I S V Y N G+I MK+ P TT + SGK+
Sbjct: 65 NNVVCSFSVRCHLNLREIALNGSNVEYRREN-----GMITMKLRRPYTTASIWSSGKVTC 119
Query: 60 LGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GA E K+A+R+FA+ L++LG +++ +++ N++ TC + F +K+ + H + +
Sbjct: 120 TGATSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITSFSSCHKENA 179
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YEPEL PG+ Y++ +P+ L IF G + +T A + + + A + IYP++ F+K+
Sbjct: 180 DYEPELHPGVTYKLKEPKATLKIFSTGSVTVT-APNVAAVQAAIEYIYPLVYEFRKE 235
>gi|380016952|ref|XP_003692431.1| PREDICTED: TATA box-binding protein-like protein 1-like [Apis
florea]
Length = 304
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 103/177 (58%), Gaps = 10/177 (5%)
Query: 4 QNMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLI 59
N+V + SV C L+L +I S V Y N G+I MK+ P TT + SGK+
Sbjct: 65 NNVVCSFSVRCHLNLREIALNGSNVEYRREN-----GMITMKLRRPYTTASIWSSGKVTC 119
Query: 60 LGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GA E K+A+R+FA+ L++LG +++ +++ N++ TC + F +K+ + H + +
Sbjct: 120 TGATSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITSFSSCHKENA 179
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YEPEL PG+ Y++ +P+ L IF G + +T A + + + A + IYP++ F+K+
Sbjct: 180 DYEPELHPGVTYKLKEPKATLKIFSTGSVTVT-APNVAAVQAAIEYIYPLVYEFRKE 235
>gi|340712494|ref|XP_003394794.1| PREDICTED: TATA box-binding protein-like protein 1-like [Bombus
terrestris]
Length = 290
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 103/177 (58%), Gaps = 10/177 (5%)
Query: 4 QNMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLI 59
N+V + SV C L+L +I S V Y N G+I MK+ P TT + SGK+
Sbjct: 65 NNVVCSFSVRCHLNLREIALNGSNVEYRREN-----GMITMKLRRPYTTASIWSSGKVTC 119
Query: 60 LGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GA E K+A+R+FA+ L++LG +++ +++ N++ TC + F +K+ + H + +
Sbjct: 120 TGATSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITSFSSCHKENA 179
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YEPEL PG+ Y++ +P+ L IF G + +T A + + + A + IYP++ F+K+
Sbjct: 180 DYEPELHPGVTYKLKEPKATLKIFSTGSVTVT-APNVAAVQAAIEYIYPLVYEFRKE 235
>gi|328791980|ref|XP_396371.4| PREDICTED: TATA box binding protein-related factor 2 isoform 1
[Apis mellifera]
Length = 306
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 103/177 (58%), Gaps = 10/177 (5%)
Query: 4 QNMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLI 59
N+V + SV C L+L +I S V Y N G+I MK+ P TT + SGK+
Sbjct: 65 NNVVCSFSVRCHLNLREIALNGSNVEYRREN-----GMITMKLRRPYTTASIWSSGKVTC 119
Query: 60 LGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GA E K+A+R+FA+ L++LG +++ +++ N++ TC + F +K+ + H + +
Sbjct: 120 TGATSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITSFSSCHKENA 179
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YEPEL PG+ Y++ +P+ L IF G + +T A + + + A + IYP++ F+K+
Sbjct: 180 DYEPELHPGVTYKLKEPKATLKIFSTGSVTVT-APNVAAVQAAIEYIYPLVYEFRKE 235
>gi|375083218|ref|ZP_09730248.1| transcription factor [Thermococcus litoralis DSM 5473]
gi|374742172|gb|EHR78580.1| transcription factor [Thermococcus litoralis DSM 5473]
Length = 188
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 101/176 (57%), Gaps = 5/176 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V ++ + LDL ++ +S+YNP +F G+I + P+ L F SGKL++
Sbjct: 9 LRIENIVASVDLFASLDLEKVIEICPHSKYNPEEFPGIICRFDEPKVALLVFSSGKLVVT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK D + A K ++L ++G + I N+V + D++ LDA+ V
Sbjct: 69 GAKSVEDIQAAVSKLVEMLSKIGTKFTRAPEIDIQNMVFSGDLKMEFNLDAVALVLPN-C 127
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPE FPG+IYR+ P+ V+L+F +G+IV +GAKS H+A++ + +L +K
Sbjct: 128 EYEPEQFPGVIYRVKDPKAVILLFSSGKIVCSGAKSE---HDAWEAVKKLLHELEK 180
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV + + +L+ + + EY P +F G+I ++ +P+ L F SGK++
Sbjct: 100 IDIQNMVFSGDLKMEFNLDAVALVLPNCEYEPEQFPGVIYRVKDPKAVILLFSSGKIVCS 159
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK EHD A +K L++ G
Sbjct: 160 GAKSEHDAWEAVKKLLHELEKYG 182
>gi|333910819|ref|YP_004484552.1| TATA-box-binding protein [Methanotorris igneus Kol 5]
gi|333751408|gb|AEF96487.1| TATA-box-binding protein [Methanotorris igneus Kol 5]
Length = 181
Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 98/172 (56%), Gaps = 2/172 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + +G +DL + + +EY P +F GL+ ++ +P+ L F+SGK+ GAK
Sbjct: 9 NVVVSTQIGSDIDLEEAALILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKVNCTGAKS 68
Query: 65 EHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ + ++A +K K LK G I K+ N+V T D+ LD + + + + YEP
Sbjct: 69 KEEAEVAIKKIIKELKDAGMDIIDNPEVKVQNMVATADLGIEPNLDDIA-LMIEGTEYEP 127
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
E FPGL+YR+ P+VV+LIF +G++VITG K + A + I L+ ++
Sbjct: 128 EQFPGLVYRLDDPKVVVLIFGSGKVVITGLKREEDAEIALNKILETLREIEE 179
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV T +G +L+ I + +EY P +F GL+ ++ +P+ L F SGK++I
Sbjct: 96 VKVQNMVATADLGIEPNLDDIALMIEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVIT 155
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPI 86
G K E D ++A K + L+++ I
Sbjct: 156 GLKREEDAEIALNKILETLREIEEII 181
>gi|332031263|gb|EGI70797.1| TATA box-binding protein-like protein 1 [Acromyrmex echinatior]
Length = 401
Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 104/177 (58%), Gaps = 10/177 (5%)
Query: 4 QNMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLI 59
N+V + SV C L+L +I S V Y N G+I MK+ P TT + SGK+
Sbjct: 175 NNVVCSFSVRCHLNLREIALNGSNVEYRREN-----GMITMKLRRPYTTASIWSSGKVTC 229
Query: 60 LGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GA E K+A+R+FA+ L++LG +++ +++ N++ TC + F +K+ + H + +
Sbjct: 230 TGATSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCSMPFAIKITSFSVHHKENA 289
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YEPEL PG+ Y++ +P+ L IF G + +T A + + + A ++IYP++ F+K+
Sbjct: 290 DYEPELHPGVTYKLKEPKATLKIFSTGSVTVT-APNVAAVQAAIEHIYPLVYEFRKE 345
>gi|405976239|gb|EKC40752.1| TATA box-binding-like protein 1 [Crassostrea gigas]
Length = 280
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 100/173 (57%), Gaps = 4/173 (2%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 63
N+V + + C L+L I + EY + ++ MKI P TT + SGK++ GA
Sbjct: 53 NVVCSFNTRCHLNLRSIAMEGSHVEYR--REQSMVNMKIRRPYTTATIWSSGKIVCTGAT 110
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E + K+A+RKFA+ L++LG+ + + F++ N++ TC + F +K+ H + +SYEP
Sbjct: 111 SEEESKIAARKFARKLQRLGYKVTFTNFRVVNVLGTCGMPFRIKIAGFSQKHPKDASYEP 170
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EL PG+ Y++ P+ L IF G I +T A + + A ++I+P++ FK +
Sbjct: 171 ELHPGVTYKIKDPKATLKIFSTGSITVT-APCVANVQAAIEHIFPLVSEFKAE 222
>gi|332797079|ref|YP_004458579.1| TATA-like box binding protein, TBP [Acidianus hospitalis W1]
gi|332694814|gb|AEE94281.1| archaeal TATA-like box binding protein, TBP [Acidianus hospitalis
W1]
Length = 167
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 89/142 (62%), Gaps = 6/142 (4%)
Query: 29 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKY 88
EY+P +F GLI ++ +P+ T L F+SGK+++ GAK + A ++ K LK+ G IK
Sbjct: 9 EYDPDQFPGLIFRLESPKVTSLIFKSGKMVVTGAKSTEELIKAVKRIIKTLKKYG--IKI 66
Query: 89 QG---FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
G +I NIV + ++ V LD + + YEPE FPGLI+RM PRVVLLIF +
Sbjct: 67 TGKPKIQIQNIVASANMHVHVNLDKAAFLLEN-NMYEPEQFPGLIFRMDDPRVVLLIFSS 125
Query: 146 GRIVITGAKSRSELHEAFDNIY 167
G++VITGAK E+++A I+
Sbjct: 126 GKMVITGAKREEEVYKAVKKIF 147
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
Y+P+ FPGLI+R+ P+V LIF +G++V+TGAKS EL +A I LK +
Sbjct: 9 EYDPDQFPGLIFRLESPKVTSLIFKSGKMVVTGAKSTEELIKAVKRIIKTLKKY 62
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ ++L++ + + Y P +F GLI ++ +PR L F SGK++I
Sbjct: 72 IQIQNIVASANMHVHVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVIT 131
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GAK E + A +K L +L
Sbjct: 132 GAKREEEVYKAVKKIFDKLNEL 153
>gi|448576731|ref|ZP_21642607.1| transcription factor [Haloferax larsenii JCM 13917]
gi|445728919|gb|ELZ80519.1| transcription factor [Haloferax larsenii JCM 13917]
Length = 188
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 96/166 (57%), Gaps = 2/166 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + + LDL ++ + +EYNP F GL+ + +P++ CL F+SGK++
Sbjct: 10 IEIQNVVASTGIEQELDLKSLSLDMAGTEYNPDNFPGLVYRTSDPKSACLVFRSGKIVCT 69
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GA A + L LG P+ + + NIV + D+R + L+AL + +
Sbjct: 70 GADSVEGVHAALDILFEELSDLGIPLPDEPEITVQNIVSSADLRSNLNLNALAIGLGLED 129
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFD 164
YEPE FPGL+YR+ +P VV+L+F +G++VITGAK ++ +A +
Sbjct: 130 VEYEPEQFPGLVYRLEEPSVVVLMFGSGKVVITGAKEVAQAEQAIE 175
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ +I N+V + + + L +L + + Y P+ FPGL+YR P+ L+F +G+I
Sbjct: 8 ESIEIQNVVASTGIEQELDLKSLS-LDMAGTEYNPDNFPGLVYRTSDPKSACLVFRSGKI 66
Query: 149 VITGAKSRSELHEAFDNIYPVLKSF 173
V TGA S +H A D ++ L
Sbjct: 67 VCTGADSVEGVHAALDILFEELSDL 91
Score = 42.7 bits (99), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + + L+LN I + EY P +F GL+ ++ P L F SGK++
Sbjct: 101 ITVQNIVSSADLRSNLNLNALAIGLGLEDVEYEPEQFPGLVYRLEEPSVVVLMFGSGKVV 160
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I GAK + A +++LG
Sbjct: 161 ITGAKEVAQAEQAIEVVRDEVQKLG 185
>gi|241239027|ref|XP_002401459.1| TATA-box-binding protein, putative [Ixodes scapularis]
gi|215496181|gb|EEC05822.1| TATA-box-binding protein, putative [Ixodes scapularis]
Length = 316
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHG-LIMKILNPRTTCLAFQSGKLLILGAK 63
N+V + SV C L+L QI EY + +G L MKI P TT + SGK+ GA
Sbjct: 77 NVVCSFSVRCHLNLRQIALTATNVEYR--RENGMLTMKIRAPYTTASMWSSGKVTCTGAT 134
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E K+A+R++A+IL++LG +K+ +++ N++ TC + F +KL + +SYEP
Sbjct: 135 SEETAKMAARRYARILQKLGFRVKFMNYRVVNVLGTCTMPFAIKLIPFSQHNRGLASYEP 194
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EL PG+ Y++ + L IF G I +T A S + +A ++I+P++ F+K+
Sbjct: 195 ELHPGVTYKIKDLKATLKIFSTGSITVT-APSVGNVQQAIEHIFPLVYEFRKE 246
>gi|393796700|ref|ZP_10380064.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum limnia BG20]
Length = 187
Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 101/168 (60%), Gaps = 2/168 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + +V DLN I + +EY+P +F GL+ ++ NP+T L F++GK++ G+K
Sbjct: 12 NVVASATVDQKFDLNDITKKFPDTEYHPDQFPGLVFRLKNPKTATLIFRTGKMVCTGSKS 71
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGF-KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E + A + + L++ G +K + NIV + ++ V L+ + S YEP
Sbjct: 72 EEMARSAVKTVVQKLRKEGVKVKKDAVVTVQNIVASINLGGKVHLEKAARTLPR-SMYEP 130
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLK 171
E FPGLI+RM+ P+ V+LIF +G++V TGAK+ S++ + N++ +L+
Sbjct: 131 EQFPGLIHRMLDPKTVILIFSSGKLVCTGAKNESDVFRSVHNLHSLLE 178
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V +I++G + L + + S Y P +F GLI ++L+P+T L F SGKL+ GAK
Sbjct: 102 QNIVASINLGGKVHLEKAARTLPRSMYEPEQFPGLIHRMLDPKTVILIFSSGKLVCTGAK 161
Query: 64 HEHDCKLASRKFAKILKQLG 83
+E D + +L++ G
Sbjct: 162 NESDVFRSVHNLHSLLEEKG 181
>gi|448581629|ref|ZP_21645410.1| transcription factor [Haloferax gibbonsii ATCC 33959]
gi|445733392|gb|ELZ84962.1| transcription factor [Haloferax gibbonsii ATCC 33959]
Length = 188
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + V LDL +++ + ++Y+P F GL+ + +P++ CL F+SGK++
Sbjct: 10 IEIQNVVASTEVPVELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACLVFRSGKVVCT 69
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GA D A LG P+ + NIV + D+ + L+AL + +
Sbjct: 70 GADSVDDVGTAIETLFDEFTDLGVPVPEDADITVQNIVSSADLGAALNLNALAIGLGLED 129
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YR+ +P VV+L+F +G++VITGAK ++ A +
Sbjct: 130 VEYEPEQFPGLVYRLDEPSVVVLMFGSGKVVITGAKRTTDAEAALKTV 177
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 91 FKIHNIVCTCDVRFPVKLDALH-HVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIV 149
+I N+V + +V PV+LD + + Y+PE FPGL+YR P+ L+F +G++V
Sbjct: 10 IEIQNVVASTEV--PVELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACLVFRSGKVV 67
Query: 150 ITGAKSRSELHEAFDNIY 167
TGA S ++ A + ++
Sbjct: 68 CTGADSVDDVGTAIETLF 85
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGK++
Sbjct: 101 ITVQNIVSSADLGAALNLNALAIGLGLEDVEYEPEQFPGLVYRLDEPSVVVLMFGSGKVV 160
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I GAK D + A + + +++LG
Sbjct: 161 ITGAKRTTDAEAALKTVDEDVRELG 185
>gi|448593777|ref|ZP_21652677.1| transcription factor [Haloferax elongans ATCC BAA-1513]
gi|445728641|gb|ELZ80242.1| transcription factor [Haloferax elongans ATCC BAA-1513]
Length = 188
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 97/180 (53%), Gaps = 12/180 (6%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + +VG LDL ++ V +E+NP F GL+ + +PR L F+SGK++
Sbjct: 10 LEIQNVVASSAVGQELDLESLSDDVAGAEFNPDNFPGLVYRTQDPRAANLIFRSGKIVCT 69
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIK-YQGFKIHNIVCTCDVRFPVKLDA------LHH 113
GA + A + + L LG P + + NIV + D+ + L+A L H
Sbjct: 70 GASSVDEVNRALEQVFEELGSLGIPTDGREEATVQNIVSSADLGTTLNLNALAIGLGLEH 129
Query: 114 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
V YEPE FPGL+YR+ P VV+L+F +G+IVITGAK EA + + ++S
Sbjct: 130 VE-----YEPEQFPGLVYRIDDPNVVVLLFGSGKIVITGAKKVEFAREAINVVSDEIESL 184
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + + EY P +F GL+ +I +P L F SGK++I G
Sbjct: 104 QNIVSSADLGTTLNLNALAIGLGLEHVEYEPEQFPGLVYRIDDPNVVVLLFGSGKIVITG 163
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
AK + A + ++ LG
Sbjct: 164 AKKVEFAREAINVVSDEIESLG 185
>gi|195480136|ref|XP_002101150.1| GE15780 [Drosophila yakuba]
gi|194188674|gb|EDX02258.1| GE15780 [Drosophila yakuba]
Length = 1872
Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats.
Identities = 64/178 (35%), Positives = 101/178 (56%), Gaps = 12/178 (6%)
Query: 5 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 60
N+V + SVGC L L I S V + N G++ MK+ +P TT + SG++
Sbjct: 1447 NVVCSFSVGCHLKLRDIALQGSNVEFRREN-----GMVTMKLRHPYTTASIWSSGRITCT 1501
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GA E K+A+R++A+ L +LG P ++ F+I N++ TC + + +K+ H + +S
Sbjct: 1502 GATSEAMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENAS 1561
Query: 121 YEPELFPGLIYRM--VKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YEPEL PG+ Y+M P+ L IF G + +T A S S + A +IYP++ F+KQ
Sbjct: 1562 YEPELHPGVTYKMRDPDPKATLKIFSTGSVTVTAA-SVSHVESAIQHIYPLVFDFRKQ 1618
>gi|374636062|ref|ZP_09707646.1| TATA-box binding family protein [Methanotorris formicicus Mc-S-70]
gi|373560320|gb|EHP86587.1| TATA-box binding family protein [Methanotorris formicicus Mc-S-70]
Length = 188
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 97/172 (56%), Gaps = 2/172 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + +G +DL + + +EY P +F GL+ ++ P+ L F+SGK+ GAK
Sbjct: 16 NVVVSTQIGSDIDLEEAALILDNAEYEPEQFPGLVCRLSEPKVALLIFRSGKVNCTGAKS 75
Query: 65 EHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ + ++A +K K LK G I K+ N+V T D+ LD + + + + YEP
Sbjct: 76 KEEAEVAIKKIIKELKDAGMDIIDDPEVKVQNMVATADLGIEPNLDDIA-LMIEGTEYEP 134
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
E FPGL+YR+ P+VV+LIF +G++VITG K + A + I L+ ++
Sbjct: 135 EQFPGLVYRLDDPKVVVLIFGSGKVVITGLKKEGDAEIALNKILETLREIEE 186
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV T +G +L+ I + +EY P +F GL+ ++ +P+ L F SGK++I
Sbjct: 103 VKVQNMVATADLGIEPNLDDIALMIEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVIT 162
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
G K E D ++A K + L+++
Sbjct: 163 GLKKEGDAEIALNKILETLREI 184
>gi|336121024|ref|YP_004575799.1| TATA-box-binding protein [Methanothermococcus okinawensis IH1]
gi|334855545|gb|AEH06021.1| TATA-box-binding protein [Methanothermococcus okinawensis IH1]
Length = 181
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 98/173 (56%), Gaps = 3/173 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + +G +DL + +EY P +F GL+ ++ P+ L F+SGKL GAK
Sbjct: 9 NVVVSTKIGNDIDLEYAADILDNAEYEPEQFPGLVCRLSEPKVALLIFRSGKLNCTGAKS 68
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ + ++A +K LK+ G I K+ N+V T ++ LD + + + YEP
Sbjct: 69 KEEAEIAIKKVIGYLKEAGFEIDENPEVKVQNMVATAELGIEPNLDDIATLEG--TEYEP 126
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
E FPGL+YR+ P+VV+LIF +G++VITG K + + + A + I LK +++
Sbjct: 127 EQFPGLVYRLDNPKVVVLIFGSGKVVITGLKHKEDAYIALEKILNTLKEMEEE 179
>gi|194891201|ref|XP_001977450.1| GG18249 [Drosophila erecta]
gi|190649099|gb|EDV46377.1| GG18249 [Drosophila erecta]
Length = 641
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 64/178 (35%), Positives = 101/178 (56%), Gaps = 12/178 (6%)
Query: 5 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 60
N+V + SVGC L L I S V Y N G++ MK+ +P TT + SG++
Sbjct: 221 NVVCSFSVGCHLKLRDIALQGSNVEYRREN-----GMVTMKLRHPYTTASIWSSGRITCT 275
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GA E K+A+R++A+ L +LG P ++ F+I N++ TC + + +K+ H + +S
Sbjct: 276 GATSEAMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENAS 335
Query: 121 YEPELFPGLIYRM--VKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YEPEL PG+ Y+M P+ L IF G + +T A S S + A +IYP++ F+K+
Sbjct: 336 YEPELHPGVTYKMRDPDPKATLKIFSTGSVTVTAA-SVSHVESAIQHIYPLVFDFRKK 392
>gi|307191585|gb|EFN75083.1| TATA box-binding protein-like protein 1 [Harpegnathos saltator]
Length = 297
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 63
N+V + SV C L+L +I + EY + +G+I MK+ P TT + SGK+ GA
Sbjct: 75 NVVCSFSVRCHLNLREIALKGSNVEYR--RENGMITMKLRRPYTTASIWSSGKVTCTGAT 132
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E K+A+R+FA+ L++LG +++ +++ N++ TC + F +K+ + H + + YEP
Sbjct: 133 SEVQAKIAARRFARSLQKLGFQVRFNNYRVVNVLGTCCMPFAIKITSFSVYHKENAEYEP 192
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EL PG+ Y++ +P+ L IF G + +T A + + + A + IYP++ F+K+
Sbjct: 193 ELHPGVTYKLKEPKATLKIFSTGSVTVT-APNVASVQAAIEYIYPLVYEFRKE 244
>gi|329764975|ref|ZP_08256562.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Candidatus Nitrosoarchaeum limnia SFB1]
gi|329138512|gb|EGG42761.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Candidatus Nitrosoarchaeum limnia SFB1]
Length = 187
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + +V DLN I + +EY+P +F GL+ ++ NP+T L F++GK++ G+K
Sbjct: 12 NVVASATVDQKFDLNDITKKFPDTEYHPDQFPGLVFRLKNPKTATLIFRTGKMVCTGSKS 71
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGF-KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E + A + + L++ G +K + NIV + ++ V L+ + S YEP
Sbjct: 72 EEMARNAVKTVVQKLRKEGVKVKKDAVVTVQNIVASINLGGKVHLEKAARTLPR-SMYEP 130
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
E FPGLI+RM+ P+ V+LIF +G++V TGAK+ S++ + N++ +L+
Sbjct: 131 EQFPGLIHRMLDPKTVILIFSSGKLVCTGAKNESDVFRSVHNLHSLLEE 179
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V +I++G + L + + S Y P +F GLI ++L+P+T L F SGKL+ GAK
Sbjct: 102 QNIVASINLGGKVHLEKAARTLPRSMYEPEQFPGLIHRMLDPKTVILIFSSGKLVCTGAK 161
Query: 64 HEHDCKLASRKFAKILKQLG 83
+E D + +L++ G
Sbjct: 162 NESDVFRSVHNLHSLLEEKG 181
>gi|296241961|ref|YP_003649448.1| TATA binding protein of transcription factor TFIID [Thermosphaera
aggregans DSM 11486]
gi|296094545|gb|ADG90496.1| TATA binding protein of transcription factor TFIID [Thermosphaera
aggregans DSM 11486]
Length = 193
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 92/152 (60%), Gaps = 6/152 (3%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+ + LDL I +R+ Y P +F GLI ++ P+TT L F+SGK+++ GAK
Sbjct: 14 ENIVATVILEHELDLELIETRIPAITYKPDQFPGLIFRLDKPKTTALIFKSGKMVVTGAK 73
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
A ++ K+L L + IK G +I NIV + D+ V L+ ++ S
Sbjct: 74 STQQLIEAVKRMIKVL--LKYDIKVTGKPRIQIQNIVASGDIGAYVHLEKAAYLLED-SM 130
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
YEPE FPGLI+RM PRVVLLIF +G++VITG
Sbjct: 131 YEPEQFPGLIHRMRSPRVVLLIFSSGKMVITG 162
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+KI NIV T + + L+ L +Y+P+ FPGLI+R+ KP+ LIF +G++V+
Sbjct: 11 YKIENIVATVILEHELDLE-LIETRIPAITYKPDQFPGLIFRLDKPKTTALIFKSGKMVV 69
Query: 151 TGAKSRSELHEAFDNIYPVL 170
TGAKS +L EA + VL
Sbjct: 70 TGAKSTQQLIEAVKRMIKVL 89
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + +G + L + + S Y P +F GLI ++ +PR L F SGK++I
Sbjct: 102 IQIQNIVASGDIGAYVHLEKAAYLLEDSMYEPEQFPGLIHRMRSPRVVLLIFSSGKMVIT 161
Query: 61 G 61
G
Sbjct: 162 G 162
>gi|242398131|ref|YP_002993555.1| Transcription factor TFIID [Thermococcus sibiricus MM 739]
gi|259517220|sp|C6A0R1.1|TBP_THESM RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|242264524|gb|ACS89206.1| Transcription factor TFIID [Thermococcus sibiricus MM 739]
Length = 185
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 100/176 (56%), Gaps = 5/176 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V ++ + LDL ++ +S+YNP +F G+I + P+ L F SGKL++
Sbjct: 6 LRIENIVASVDLFASLDLEKVIEICPHSKYNPEEFPGIICRFDEPKVALLVFSSGKLVVT 65
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK D + A K ++L ++G + I N+V + D++ LDA+ V
Sbjct: 66 GAKSVDDIQAAVSKLVEMLSKIGTKFGRAPEIDIQNMVFSGDLKMEFNLDAVALVLPN-C 124
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPE FPG+IYR+ P+ V+L+F +G+IV +GAKS H+A++ + +L K
Sbjct: 125 EYEPEQFPGVIYRVKDPKAVILLFSSGKIVCSGAKSE---HDAWEAVKKLLHELDK 177
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV + + +L+ + + EY P +F G+I ++ +P+ L F SGK++
Sbjct: 97 IDIQNMVFSGDLKMEFNLDAVALVLPNCEYEPEQFPGVIYRVKDPKAVILLFSSGKIVCS 156
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK EHD A +K L + G
Sbjct: 157 GAKSEHDAWEAVKKLLHELDKYG 179
>gi|57640067|ref|YP_182545.1| transcription factor [Thermococcus kodakarensis KOD1]
gi|2833446|sp|Q52366.1|TBP_PYRKO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|2129420|pir||JC4514 TATA-binding protein - Pyrococcus sp
gi|1405351|dbj|BAA08743.1| TATA binding protein [Pyrococcus sp.]
gi|57158391|dbj|BAD84321.1| transcription initiation factor TFIID [Thermococcus kodakarensis
KOD1]
Length = 190
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 99/174 (56%), Gaps = 2/174 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V ++ + L+L ++ S+YNP +F G+I + +P+ L F SGKL++
Sbjct: 9 LRIENIVASVDLFTDLNLEKVIEICPSSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK D K A K ++LK++G + I N+V + D+ LDA+ +
Sbjct: 69 GAKSVDDIKRAVYKLIEMLKKIGAKFTREPQIDIQNMVFSGDIGMEFNLDAVALILPN-C 127
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPG+IYR+ +PR V+L+F +G+IV +GAKS + EA + L+ +
Sbjct: 128 EYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAKSEQDAWEAVKKLLRELEKY 181
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV + +G +L+ + + EY P +F G+I ++ PR L F SGK++
Sbjct: 100 IDIQNMVFSGDIGMEFNLDAVALILPNCEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCS 159
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK E D A +K + L++ G
Sbjct: 160 GAKSEQDAWEAVKKLLRELEKYG 182
>gi|2833470|sp|Q56253.1|TBP_THECE RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|498255|gb|AAA73412.1| TATA-binding protein [Thermococcus celer]
Length = 189
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 5/176 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V ++ + L+L ++ +S+YNP +F G+I + P+ L F SGKL++
Sbjct: 6 LRIENIVASVDLFTQLNLERVIEMCPHSKYNPEEFPGIICRFDEPKVALLIFSSGKLVVT 65
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK D + A K ++LK++G + I N+V + D+ LDA+ +
Sbjct: 66 GAKSVEDIERAVNKLIQMLKKIGAKFSRAPQIDIQNMVFSGDIGMEFNLDAVA-LSLPNC 124
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPE FPG+IYR+ +PR V+L+F +G+IV +GAKS H+A++ + +L+ +K
Sbjct: 125 EYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAKSE---HDAWEAVRKLLRELEK 177
>gi|222481286|ref|YP_002567522.1| transcription factor [Halorubrum lacusprofundi ATCC 49239]
gi|222454662|gb|ACM58925.1| TATA-box binding family protein [Halorubrum lacusprofundi ATCC
49239]
Length = 186
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + + LDL + + +E+NP F GL+ + +P+ L F+SGK++
Sbjct: 8 IEIQNVVASTGIDQELDLETLVDDIPGAEFNPDNFPGLVDRTQDPKAAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GA D A + L++LG P+ + NIV + D+ + + L+AL + +
Sbjct: 68 GAASVDDVHEALEIIFEKLRELGIPVTDSPEITVQNIVSSADLGYDLNLNALAIGLGLED 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YRM P VV+L+F +G+IVITG K + A +NI
Sbjct: 128 VEYEPEQFPGLVYRMEDPGVVILLFGSGKIVITGGKFAEDATAAVENI 175
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ +I N+V + + + L+ L + + P+ FPGL+ R P+ LIF +G+I
Sbjct: 6 ETIEIQNVVASTGIDQELDLETLVD-DIPGAEFNPDNFPGLVDRTQDPKAAALIFRSGKI 64
Query: 149 VITGAKSRSELHEAFDNIYPVLKSF 173
V TGA S ++HEA + I+ L+
Sbjct: 65 VCTGAASVDDVHEALEIIFEKLREL 89
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ +P L F SGK++
Sbjct: 99 ITVQNIVSSADLGYDLNLNALAIGLGLEDVEYEPEQFPGLVYRMEDPGVVILLFGSGKIV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G K D A + + LG
Sbjct: 159 ITGGKFAEDATAAVENIVEKIDDLG 183
>gi|408406051|ref|YP_006864035.1| TATA-box-binding protein [Candidatus Nitrososphaera gargensis
Ga9.2]
gi|408366647|gb|AFU60377.1| TATA-box-binding protein [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 187
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + +V ++LN I EY+P +F GL+ ++ +P+T L F SGK++ GAK
Sbjct: 11 ENVVASATVNQTVNLNLITQIFPDVEYHPDQFPGLVFRLRSPKTATLIFSSGKMVCTGAK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E A + LK+ G P++++ +I NIV + + + L+ V + S YE
Sbjct: 71 SEKMAIQAVKNVVLKLKKGGIPLEHEPQIEIQNIVASASLGGKIHLELAARVLPR-SMYE 129
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
PE FPGLI+RM+ P+ V+L+F +G++V TGAK SE++ A N++ +L+
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESEVYRAVGNLHTLLEE 179
>gi|374633744|ref|ZP_09706109.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Metallosphaera yellowstonensis MK1]
gi|373523532|gb|EHP68452.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Metallosphaera yellowstonensis MK1]
Length = 167
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 91/148 (61%), Gaps = 6/148 (4%)
Query: 29 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKY 88
EY+P +F GLI ++ +P+ T L F+SGK+++ GAK + A ++ K L++ G I+
Sbjct: 9 EYDPDQFPGLIFRLESPKVTSLIFKSGKMVVTGAKSTEELIKAVKRIIKSLRRYG--IRI 66
Query: 89 QG---FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
G +I NIV + ++ V LD + + YEPE FPGLI+RM PRVVLLIF +
Sbjct: 67 GGKPKIQIQNIVASANMHVHVNLDKAAFLLEN-NMYEPEQFPGLIFRMDDPRVVLLIFSS 125
Query: 146 GRIVITGAKSRSELHEAFDNIYPVLKSF 173
G++VITGAK E++ A I+ L+S
Sbjct: 126 GKMVITGAKREDEVYRAVKKIFDKLESL 153
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ ++L++ + + Y P +F GLI ++ +PR L F SGK++I
Sbjct: 72 IQIQNIVASANMHVHVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVIT 131
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GAK E + A +K L+ L
Sbjct: 132 GAKREDEVYRAVKKIFDKLESL 153
>gi|118576418|ref|YP_876161.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Cenarchaeum symbiosum A]
gi|118194939|gb|ABK77857.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Cenarchaeum symbiosum A]
Length = 186
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + SV +DLN+I EY+P +F GL+ ++ +P+T L F SGK++ G+K
Sbjct: 11 ENVVASASVDQKMDLNEITRTFPDVEYHPDQFPGLVFRLKSPKTATLIFTSGKMVCTGSK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGF-KIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E + A + + L++ G +K + +I NIV + ++ + L+ + S YE
Sbjct: 71 SEEMARKAVKTVVQKLRKGGIKVKKEAVVEIQNIVASINLGGKIHLEQAARTLPR-SMYE 129
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
PE FPGLI+RM+ P+ V+L+F +G++V TGAK +++ + +N++ +L+
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFSSGKLVCTGAKKEPDVYRSVNNLHALLEE 179
>gi|389847604|ref|YP_006349843.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|448617457|ref|ZP_21666044.1| transcription factor [Haloferax mediterranei ATCC 33500]
gi|388244910|gb|AFK19856.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|445748377|gb|ELZ99824.1| transcription factor [Haloferax mediterranei ATCC 33500]
Length = 188
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 97/175 (55%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + +VG LDL ++ + ++Y+P F GL+ + P+ L F+SGK++
Sbjct: 10 LEIQNVVASTAVGQELDLESLSMDLVGADYDPDNFPGLVYRTQEPKAASLIFRSGKIVCT 69
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIK-YQGFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GA D A + L +LG P + + I NIV + D+ + L+AL + +
Sbjct: 70 GASSVDDVDRALEQVFGELSKLGIPTEDREEATIQNIVSSADLGTTLNLNALAIGLGLED 129
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P VV+L+F +G+IVITGAK EA + + + S
Sbjct: 130 VEYEPEQFPGLVYRIDEPSVVVLMFGSGKIVITGAKQVEHAREAINVVTDEIDSL 184
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 82 LGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLL 141
+ H + + +I N+V + V + L++L + + Y+P+ FPGL+YR +P+ L
Sbjct: 1 MSHEARLESLEIQNVVASTAVGQELDLESLS-MDLVGADYDPDNFPGLVYRTQEPKAASL 59
Query: 142 IFVNGRIVITGAKSRSELHEAFDNIY 167
IF +G+IV TGA S ++ A + ++
Sbjct: 60 IFRSGKIVCTGASSVDDVDRALEQVF 85
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ +I P L F SGK++I G
Sbjct: 104 QNIVSSADLGTTLNLNALAIGLGLEDVEYEPEQFPGLVYRIDEPSVVVLMFGSGKIVITG 163
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
AK + A + LG
Sbjct: 164 AKQVEHAREAINVVTDEIDSLG 185
>gi|329766561|ref|ZP_08258104.1| TATA-box binding family protein [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|393796800|ref|ZP_10380164.1| TATA-box binding family protein [Candidatus Nitrosoarchaeum limnia
BG20]
gi|329136816|gb|EGG41109.1| TATA-box binding family protein [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 187
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + SV +DLN+I + +EY+P +F GL+ ++ NPRT L F++GK++ GAK
Sbjct: 11 ENVVASASVDQKIDLNEITEKFPDTEYHPEQFPGLVFRLQNPRTATLIFRTGKMVCTGAK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E A + L++ IK + NIV ++ + L+ + S YE
Sbjct: 71 SEDMAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTLPR-SMYE 129
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
PE FPGLI+RM+ P+ V+L+F +G++V TGAK S+++ + N++ +L+
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESDVYRSVHNLHSLLEE 179
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQF--SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+ N+V + V K+D L+ + +F + Y PE FPGL++R+ PR LIF G++V
Sbjct: 10 VENVVASASVD--QKID-LNEITEKFPDTEYHPEQFPGLVFRLQNPRTATLIFRTGKMVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS +A + + L+ K
Sbjct: 67 TGAKSEDMAIKAVNTVVQKLRKGK 90
>gi|312136408|ref|YP_004003745.1| tata binding protein of transcription factor tfiid [Methanothermus
fervidus DSM 2088]
gi|311224127|gb|ADP76983.1| TATA binding protein of transcription factor TFIID [Methanothermus
fervidus DSM 2088]
Length = 183
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 95/157 (60%), Gaps = 4/157 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + ++G P+DL++I+ ++ +N +F GL+ K+ P+T L F SGKL+
Sbjct: 8 IEIENIVASATLGRPIDLSKISKALKSVNFNRKQFPGLVYKLDKPKTAALIFGSGKLVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGH--PIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 118
GAK D A + ++++ P Y+ KI NIV + ++ P+ LD +
Sbjct: 68 GAKSVEDSIKAIKTTVNKIREVDPDIPEDYE-IKIQNIVASANLSKPLNLDEIAMTLEN- 125
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKS 155
+ YEPE FPGL+YR+ KP+VVLL+F +G++V TGA+
Sbjct: 126 TEYEPEQFPGLVYRLDKPKVVLLLFGSGKVVCTGARD 162
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 49/82 (59%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ PL+L++I + +EY P +F GL+ ++ P+ L F SGK++
Sbjct: 99 IKIQNIVASANLSKPLNLDEIAMTLENTEYEPEQFPGLVYRLDKPKVVLLLFGSGKVVCT 158
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GA+ D KL +K + LK+L
Sbjct: 159 GARDPKDAKLGVKKTKERLKEL 180
>gi|189237795|ref|XP_972962.2| PREDICTED: similar to tata-box binding protein [Tribolium
castaneum]
gi|270007920|gb|EFA04368.1| hypothetical protein TcasGA2_TC014666 [Tribolium castaneum]
Length = 262
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 104/176 (59%), Gaps = 9/176 (5%)
Query: 4 QNMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
N+V + SV C L+L +I V Y + N GK + MK+ P TT + SGK+
Sbjct: 56 NNVVCSFSVRCHLNLREIALNGINVEYRKEN-GK---ITMKLRRPYTTASIWSSGKVTCT 111
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GA E K+A+R+FA+ L++LG +++ +++ N++ TC + F +K+++ H + +
Sbjct: 112 GATSELQAKIAARRFARCLQKLGFKVRFNNYRVVNVLGTCSMPFAIKINSFSERHKE-AD 170
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YEPEL PG+ Y++ P+ L IF G + +T A S +++ A + I+P++ F+K+
Sbjct: 171 YEPELHPGVTYKLQSPKATLKIFSTGSVTVT-APSVADVQAAIEYIFPLVYEFRKE 225
>gi|116753474|ref|YP_842592.1| transcription factor [Methanosaeta thermophila PT]
gi|121693723|sp|A0B5H8.1|TBP_METTP RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|116664925|gb|ABK13952.1| TATA binding protein of transcription factor TFIID [Methanosaeta
thermophila PT]
Length = 183
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 97/165 (58%), Gaps = 3/165 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + + DL +I S + +EYN KF GL+ ++ +P+ L F SGK++
Sbjct: 5 INIENVVASTKLADEFDLVKIESELEGAEYNKEKFPGLVYRVKSPKAAFLIFTSGKVVCT 64
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIH--NIVCTCDVRFPVKLDALH-HVHSQ 117
GAK+ D + A+ LK +G +IH NIV + D++ + L+A+ + +
Sbjct: 65 GAKNVEDVRTVITNMARTLKSIGFDNINLEPEIHVQNIVASADLKTDLNLNAIALGLGLE 124
Query: 118 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
YEPE FPGL+YR+ +P+VV+LIF +G++V+TG KS E E
Sbjct: 125 NIEYEPEQFPGLVYRIKQPKVVVLIFSSGKLVVTGGKSPEECEEG 169
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+H QN+V + + L+LN I + EY P +F GL+ +I P+ L F SGKL+
Sbjct: 97 IHVQNIVASADLKTDLNLNAIALGLGLENIEYEPEQFPGLVYRIKQPKVVVLIFSSGKLV 156
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
+ G K +C+ R + L+ LG
Sbjct: 157 VTGGKSPEECEEGVRIVRQQLENLG 181
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQF--SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + + D L + S+ + Y E FPGL+YR+ P+ LIF +G++V
Sbjct: 7 IENVVAST--KLADEFD-LVKIESELEGAEYNKEKFPGLVYRVKSPKAAFLIFTSGKVVC 63
Query: 151 TGAKSRSELHEAFDNIYPVLKSF 173
TGAK+ ++ N+ LKS
Sbjct: 64 TGAKNVEDVRTVITNMARTLKSI 86
>gi|322796560|gb|EFZ19034.1| hypothetical protein SINV_07503 [Solenopsis invicta]
Length = 303
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 63
N+V + SV C L+L +I + EY + +G+I MK+ P TT + SGK+ GA
Sbjct: 81 NVVCSFSVRCHLNLREIALKGSNVEYR--RENGMITMKLRRPYTTASIWSSGKVTCTGAT 138
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E K+A+R+FA+ L++LG +++ +++ N++ TC + F +K+ + H + + YEP
Sbjct: 139 SEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITSFSIHHKENADYEP 198
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EL PG+ Y++ P+ L IF G + +T A + + + A ++IYP++ F+K+
Sbjct: 199 ELHPGVTYKLKDPKATLKIFSTGSVTVT-APNVAAVQAAIEHIYPLVYEFRKE 250
>gi|340345517|ref|ZP_08668649.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339520658|gb|EGP94381.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 187
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + SV +DLN+I + +EY+P +F GL+ ++ NPRT L F++GK++ GAK
Sbjct: 11 ENVVASASVEQKIDLNEITEKFPDTEYHPEQFPGLVFRLQNPRTATLIFRTGKMVCTGAK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E A + L++ IK + NIV ++ + L+ + S YE
Sbjct: 71 SEDMAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTLPR-SMYE 129
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
PE FPGLI+RM+ P+ V+L+F +G++V TGAK S+++ + N++ +L+
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESDVYRSVHNLHSLLEE 179
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQF--SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+ N+V + V K+D L+ + +F + Y PE FPGL++R+ PR LIF G++V
Sbjct: 10 VENVVASASVE--QKID-LNEITEKFPDTEYHPEQFPGLVFRLQNPRTATLIFRTGKMVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS +A + + L+ K
Sbjct: 67 TGAKSEDMAIKAVNTVVQKLRKGK 90
>gi|212224460|ref|YP_002307696.1| transcription factor [Thermococcus onnurineus NA1]
gi|226703563|sp|B6YXI6.1|TBP_THEON RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|212009417|gb|ACJ16799.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Thermococcus onnurineus NA1]
Length = 192
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 104/178 (58%), Gaps = 9/178 (5%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V ++ + L+L ++ S+YNP +F G+I + P+ L F SGKL++
Sbjct: 9 LRIENIVASVDLFTQLNLEKVIEICPNSKYNPEEFPGIICRFEEPKVALLIFSSGKLVVT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ---GFKIHNIVCTCDVRFPVKLDALHHVHSQ 117
GAK D + A K ++LK++G K+Q I N+V + D+ LDA+ +
Sbjct: 69 GAKSVEDIERAVNKLIQMLKRIGA--KFQRAPQIDIQNMVFSGDIGMEFNLDAVA-LSLP 125
Query: 118 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPE FPG+IYR+ +PR V+L+F +G+IV +GAKS H+A++ + +L+ +K
Sbjct: 126 NCEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAKSE---HDAWEAVRKLLRELEK 180
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV + +G +L+ + + EY P +F G+I ++ PR L F SGK++
Sbjct: 100 IDIQNMVFSGDIGMEFNLDAVALSLPNCEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCS 159
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK EHD A RK + L++ G
Sbjct: 160 GAKSEHDAWEAVRKLLRELEKYG 182
>gi|383852426|ref|XP_003701729.1| PREDICTED: TATA box-binding protein-like protein 1-like [Megachile
rotundata]
Length = 295
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 102/174 (58%), Gaps = 4/174 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGA 62
N+V + SV C L+L +I EY + G+I MK+ P TT + SGK+ GA
Sbjct: 70 NNVVCSFSVRCHLNLREIALNGSNVEYR--RESGMITMKLRRPYTTASIWSSGKVTCTGA 127
Query: 63 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E K+A+R+FA+ L++LG +++ +++ N++ TC + F +K+ + H + + YE
Sbjct: 128 TSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITSFSLYHKENADYE 187
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
PEL PG+ Y++ +P+ L IF G + +T A + + + A + IYP++ F+K+
Sbjct: 188 PELHPGVTYKLKEPKATLKIFSTGSVTVT-APNVAAVQAAIEYIYPLVYEFRKE 240
>gi|161529027|ref|YP_001582853.1| TATA-box binding family protein [Nitrosopumilus maritimus SCM1]
gi|160340328|gb|ABX13415.1| TATA-box binding family protein [Nitrosopumilus maritimus SCM1]
Length = 187
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + SV +DLN+I + +EY+P +F GL+ ++ PRT L F++GK++ GAK
Sbjct: 11 ENVVASASVDQKIDLNEITEKFPDTEYHPEQFPGLVFRLSTPRTATLIFRTGKMVCTGAK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E A + L++ IK + NIV ++ + L+ + S YE
Sbjct: 71 SEEMAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTLPR-SMYE 129
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
PE FPGLI+RM+ P+ V+L+F +G++V TGAK S+++ + N++ VL+
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESDVYRSVHNLHSVLEE 179
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQF--SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+ N+V + V K+D L+ + +F + Y PE FPGL++R+ PR LIF G++V
Sbjct: 10 VENVVASASVD--QKID-LNEITEKFPDTEYHPEQFPGLVFRLSTPRTATLIFRTGKMVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS +A + + L+ K
Sbjct: 67 TGAKSEEMAIKAVNTVVQKLRKGK 90
>gi|329764826|ref|ZP_08256418.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum limnia SFB1]
gi|340344477|ref|ZP_08667609.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|393796672|ref|ZP_10380036.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum limnia BG20]
gi|329138693|gb|EGG42937.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum limnia SFB1]
gi|339519618|gb|EGP93341.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 186
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + SV +DLN+I EY+P +F GL+ ++ +P+T L F SGK++ G+K
Sbjct: 11 ENVVASASVDQKMDLNEITRTFPDVEYHPDQFPGLVFRLKSPKTATLIFTSGKMVCTGSK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E + A + + L++ G +K +I NIV + ++ + L+ + S YE
Sbjct: 71 SEEMARKAVKTVVQKLRKGGIKVKKDATVEIQNIVASINLGGKIHLEQAARTLPR-SMYE 129
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
PE FPGLI+RM+ P+ V+L+F +G++V TGAK +++ + +N++ +L+
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFSSGKLVCTGAKKEPDVYRSVNNLHALLEE 179
>gi|161528106|ref|YP_001581932.1| 2-alkenal reductase [Nitrosopumilus maritimus SCM1]
gi|407462144|ref|YP_006773461.1| 2-alkenal reductase [Candidatus Nitrosopumilus koreensis AR1]
gi|160339407|gb|ABX12494.1| 2-alkenal reductase [Nitrosopumilus maritimus SCM1]
gi|407045766|gb|AFS80519.1| 2-alkenal reductase [Candidatus Nitrosopumilus koreensis AR1]
Length = 186
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + SV +DLN+I EY+P +F GL+ ++ +P+T L F SGK++ G+K
Sbjct: 11 ENVVASASVDQKMDLNEITRTFPDVEYHPDQFPGLVFRLKSPKTATLIFTSGKMVCTGSK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGF-KIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E + A + + L++ G +K +I NIV + ++ + L+ + S YE
Sbjct: 71 SEEMARKAVKTVVQKLRKGGIKVKKDAVVEIQNIVASINLGGKIHLEQAARTLPR-SMYE 129
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
PE FPGLI+RM+ P+ V+L+F +G++V TGAK +++ + +N++ +L+
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFSSGKLVCTGAKKEPDVYRSVNNLHALLEE 179
>gi|407463138|ref|YP_006774455.1| TATA-box binding family protein [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046760|gb|AFS81513.1| TATA-box binding family protein [Candidatus Nitrosopumilus
koreensis AR1]
Length = 187
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 100/170 (58%), Gaps = 2/170 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + SV +DLN+I + +EY+P +F GL+ ++ +PRT L F++GK++ GAK
Sbjct: 11 ENVVASASVDQKIDLNEITEKFPDTEYHPEQFPGLVFRLKSPRTATLIFRTGKMVCTGAK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E A + L++ IK + NIV ++ + L+ + S YE
Sbjct: 71 SEEMAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTLPR-SMYE 129
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
PE FPGLI+RM+ P+ V+L+F +G++V TGAK S+++ + N++ VL+
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESDVYRSVHNLHSVLEE 179
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQF--SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+ N+V + V K+D L+ + +F + Y PE FPGL++R+ PR LIF G++V
Sbjct: 10 VENVVASASVD--QKID-LNEITEKFPDTEYHPEQFPGLVFRLKSPRTATLIFRTGKMVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS +A + + L+ K
Sbjct: 67 TGAKSEEMAIKAVNTVVQKLRKGK 90
>gi|341582887|ref|YP_004763379.1| transcription factor [Thermococcus sp. 4557]
gi|340810545|gb|AEK73702.1| transcription factor [Thermococcus sp. 4557]
Length = 190
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 102/176 (57%), Gaps = 5/176 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V ++ + L+L ++ S+YNP +F G+I + P+ L F SGKL++
Sbjct: 9 LRIENIVASVDLFTQLNLEKVIEICPNSKYNPEEFPGIICRFEEPKVALLIFSSGKLVVT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK D + A K ++LK++G + I N+V + D+ LDA+ +
Sbjct: 69 GAKSVEDIERAVNKLIQMLKKIGAKFARAPQIDIQNMVFSGDIGMEFNLDAVA-LSLPNC 127
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPE FPG+IYR+ +PR V+L+F +G+IV +GAKS H+A++ + +L+ +K
Sbjct: 128 EYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAKSE---HDAWEAVRKLLRELEK 180
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV + +G +L+ + + EY P +F G+I ++ PR L F SGK++
Sbjct: 100 IDIQNMVFSGDIGMEFNLDAVALSLPNCEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCS 159
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK EHD A RK + L++ G
Sbjct: 160 GAKSEHDAWEAVRKLLRELEKYG 182
>gi|390961570|ref|YP_006425404.1| TATA-box binding protein [Thermococcus sp. CL1]
gi|390519878|gb|AFL95610.1| TATA-box binding protein [Thermococcus sp. CL1]
Length = 187
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 102/176 (57%), Gaps = 5/176 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V ++ + L+L ++ S+YNP +F G+I + P+ L F SGKL++
Sbjct: 6 LRIENIVASVDLFTQLNLEKVIEICPNSKYNPEEFPGIICRFEEPKVALLIFSSGKLVVT 65
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK D + A K ++LK++G + I N+V + D+ LDA+ +
Sbjct: 66 GAKSVEDIERAVNKLIQMLKKIGAKFGRAPQIDIQNMVFSGDIGMEFNLDAVA-LSLPNC 124
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPE FPG+IYR+ +PR V+L+F +G+IV +GAKS H+A++ + +L+ +K
Sbjct: 125 EYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAKSE---HDAWEAVRKLLRELEK 177
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV + +G +L+ + + EY P +F G+I ++ PR L F SGK++
Sbjct: 97 IDIQNMVFSGDIGMEFNLDAVALSLPNCEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCS 156
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK EHD A RK + L++ G
Sbjct: 157 GAKSEHDAWEAVRKLLRELEKYG 179
>gi|448610180|ref|ZP_21661030.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
gi|445745539|gb|ELZ97006.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
Length = 189
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 93/166 (56%), Gaps = 2/166 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + +VG LDL ++ + ++Y+P F GL+ + +P+ L F+SGK++
Sbjct: 11 LEIQNVVASTAVGQELDLESLSMDLVGADYDPDNFPGLVYRTQDPKAASLIFRSGKIVCT 70
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIK-YQGFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GA D A + L +LG P + I NIV + D+ + L+AL + +
Sbjct: 71 GASSVDDVDRALEQVFGELSKLGIPTDDREEATIQNIVSSADLGTTLNLNALAIGLGLED 130
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFD 164
YEPE FPGL+YR+ P VV+L+F +G+IVITGAK EA +
Sbjct: 131 VEYEPEQFPGLVYRIEDPSVVVLMFGSGKIVITGAKQVEHAREAIN 176
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 82 LGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLL 141
+ H + + +I N+V + V + L++L + + Y+P+ FPGL+YR P+ L
Sbjct: 2 MSHEARLESLEIQNVVASTAVGQELDLESLS-MDLVGADYDPDNFPGLVYRTQDPKAASL 60
Query: 142 IFVNGRIVITGAKSRSELHEAFDNIY 167
IF +G+IV TGA S ++ A + ++
Sbjct: 61 IFRSGKIVCTGASSVDDVDRALEQVF 86
>gi|389847270|ref|YP_006349509.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|448614785|ref|ZP_21663813.1| transcription factor [Haloferax mediterranei ATCC 33500]
gi|388244576|gb|AFK19522.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|445752872|gb|EMA04291.1| transcription factor [Haloferax mediterranei ATCC 33500]
Length = 186
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + +G LDL + + +++NP F GL+ + +P+ L F+SGK++
Sbjct: 8 IEIQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D A L++L P+ + + NIV + D+ + L+AL + +
Sbjct: 68 GAKSIDDVHDALEIIFDKLRELQIPVDDEPEITVQNIVSSADLGHNLNLNALAIGLGLED 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YRM +P+VV+L+F +G+IVITG K + A + I
Sbjct: 128 VEYEPEQFPGLVYRMDEPKVVILLFGSGKIVITGGKRTDDAETAVEEI 175
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I N+V + + + L+AL + + P+ FPGL+YR P+ LIF +G+IV
Sbjct: 8 IEIQNVVASTGIGQELDLEALAD-DLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS ++H+A + I+ L+ +
Sbjct: 67 TGAKSIDDVHDALEIIFDKLRELQ 90
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ P+ L F SGK++
Sbjct: 99 ITVQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLVYRMDEPKVVILLFGSGKIV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G K D + A + + + LG
Sbjct: 159 ITGGKRTDDAETAVEEIVERIDALG 183
>gi|195386532|ref|XP_002051958.1| GJ17285 [Drosophila virilis]
gi|194148415|gb|EDW64113.1| GJ17285 [Drosophila virilis]
Length = 387
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 98/177 (55%), Gaps = 10/177 (5%)
Query: 4 QNMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLI 59
N+V + SV C L L +I S V Y N G++ M++ P TT + SG++
Sbjct: 55 NNVVCSFSVRCHLKLREIALHGSNVEYRREN-----GMVTMRLRRPYTTASIWSSGRITC 109
Query: 60 LGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GA E K+A+R++A+ L +LG P+ +Q F+I N++ TC + + +++ H +
Sbjct: 110 TGAISEPQAKVAARRYARSLGKLGFPVHFQNFRIVNVLGTCSMPWSIRIVKFSERHRDNA 169
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
SYEPEL PG+ Y+M P+ + IF G I +T A S + + A +YP++ F+ +
Sbjct: 170 SYEPELHPGVTYKMRDPKATMKIFSTGSITVTAA-SVNAVESAIQRLYPLVHEFRTR 225
>gi|345004914|ref|YP_004807767.1| TATA-box-binding protein [halophilic archaeon DL31]
gi|344320540|gb|AEN05394.1| TATA-box-binding protein [halophilic archaeon DL31]
Length = 186
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + +G LDL + + +++NP F GL+ + +P+ L F+SGK++
Sbjct: 8 IEIQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D A + L+ L P++ + + NIV + D+ + L+AL + +
Sbjct: 68 GAKSIDDVHDALAIIFQKLRDLTIPVEEEPEITVQNIVSSADLGHNLNLNALAIGLGLED 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YRM P VV+L+F +G+IVITG K + EA + I
Sbjct: 128 VEYEPEQFPGLVYRMDDPDVVILLFGSGKIVITGGKQVQDAQEAVEKI 175
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I N+V + + + L+AL + + P+ FPGL+YR P+ LIF +G+IV
Sbjct: 8 IEIQNVVASTGIGQELDLEALAE-DLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSF 173
TGAKS ++H+A I+ L+
Sbjct: 67 TGAKSIDDVHDALAIIFQKLRDL 89
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ +P L F SGK++
Sbjct: 99 ITVQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLVYRMDDPDVVILLFGSGKIV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G K D + A K + ++ LG
Sbjct: 159 ITGGKQVQDAQEAVEKIVERIEGLG 183
>gi|330507959|ref|YP_004384387.1| transcription factor TFIID [Methanosaeta concilii GP6]
gi|328928767|gb|AEB68569.1| transcription factor TFIID [Methanosaeta concilii GP6]
Length = 183
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + + DL++I + + +EYN KF GL+ ++ PR L F SGK++
Sbjct: 5 INIENVVASTKLAEEFDLHKIEAELEGAEYNKEKFPGLVYRVKAPRAAFLIFTSGKVVCT 64
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIH--NIVCTCDVRFPVKLDALH-HVHSQ 117
GAK+ D + A+ LK +G +IH NIV + D++ + L+A+ + +
Sbjct: 65 GAKNVEDVRTVITNMAQTLKSIGFENIDLEPEIHVQNIVASADLKTDLNLNAIALGLGLE 124
Query: 118 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
YEPE FPGL+YR+ P+VV+LIF +G++V+TG KS E E
Sbjct: 125 NIEYEPEQFPGLVYRIKTPKVVVLIFSSGKLVVTGGKSPEECEEG 169
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQF--SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + + D LH + ++ + Y E FPGL+YR+ PR LIF +G++V
Sbjct: 7 IENVVAST--KLAEEFD-LHKIEAELEGAEYNKEKFPGLVYRVKAPRAAFLIFTSGKVVC 63
Query: 151 TGAKSRSELHEAFDNIYPVLKSF 173
TGAK+ ++ N+ LKS
Sbjct: 64 TGAKNVEDVRTVITNMAQTLKSI 86
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+H QN+V + + L+LN I + EY P +F GL+ +I P+ L F SGKL+
Sbjct: 97 IHVQNIVASADLKTDLNLNAIALGLGLENIEYEPEQFPGLVYRIKTPKVVVLIFSSGKLV 156
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
+ G K +C+ + + L+ +G
Sbjct: 157 VTGGKSPEECEEGVKIVREQLENMG 181
>gi|330834362|ref|YP_004409090.1| transcription factor [Metallosphaera cuprina Ar-4]
gi|329566501|gb|AEB94606.1| transcription factor [Metallosphaera cuprina Ar-4]
Length = 167
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 91/148 (61%), Gaps = 6/148 (4%)
Query: 29 EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKY 88
EY+P +F GLI ++ +P+ T L F+SGK+++ GAK + A ++ K L++ G I+
Sbjct: 9 EYDPDQFPGLIFRLESPKVTSLIFKSGKMVVTGAKSTEELIKAVKRIIKSLRRYG--IRI 66
Query: 89 QG---FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
G +I NIV + ++ V LD + + YEPE FPGLI+RM PRVVLLIF +
Sbjct: 67 GGKPKIQIQNIVASANMHVHVNLDKAAFLLEN-NMYEPEQFPGLIFRMDDPRVVLLIFSS 125
Query: 146 GRIVITGAKSRSELHEAFDNIYPVLKSF 173
G++VITGAK E+++A I+ L+
Sbjct: 126 GKMVITGAKREDEVYKAVKKIFDKLEEL 153
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ ++L++ + + Y P +F GLI ++ +PR L F SGK++I
Sbjct: 72 IQIQNIVASANMHVHVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVIT 131
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GAK E + A +K L++L
Sbjct: 132 GAKREDEVYKAVKKIFDKLEEL 153
>gi|307352931|ref|YP_003893982.1| TATA-box binding family protein [Methanoplanus petrolearius DSM
11571]
gi|307156164|gb|ADN35544.1| TATA-box binding family protein [Methanoplanus petrolearius DSM
11571]
Length = 186
Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 98/175 (56%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + V LDL IN +++ +EYN +F G+++++ P+ L F SGK+++
Sbjct: 9 LKIENIVASAKVAKELDLQMINEKIKDAEYNKKRFPGVVLRMQEPKIAALVFGSGKVVLT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK L++L I K +K+ NIV + D+ P+ L+ + + +
Sbjct: 69 GAKSIDSLSKGLDILGDKLRELKLDIPKNLEYKVQNIVTSADLGTPINLNKIAVGFNLER 128
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P+VV+L+F +G+++ITG K + +A I L +
Sbjct: 129 IEYEPEQFPGLVYRLDEPKVVVLLFGSGKLIITGGKQPEDAKKAVQKILSDLSNL 183
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINS--RVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G P++LN+I + EY P +F GL+ ++ P+ L F SGKL+I G
Sbjct: 103 QNIVTSADLGTPINLNKIAVGFNLERIEYEPEQFPGLVYRLDEPKVVVLLFGSGKLIITG 162
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D K A +K L LG
Sbjct: 163 GKQPEDAKKAVQKILSDLSNLG 184
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
KI NIV + V + L ++ + + Y + FPG++ RM +P++ L+F +G++V+
Sbjct: 9 LKIENIVASAKVAKELDLQMINE-KIKDAEYNKKRFPGVVLRMQEPKIAALVFGSGKVVL 67
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS L + D + L+ K
Sbjct: 68 TGAKSIDSLSKGLDILGDKLRELK 91
>gi|8777985|gb|AAF79169.1| TATA-box binding protein 2 [Habrotrocha constricta]
Length = 108
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 74/107 (69%)
Query: 12 VGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLA 71
+GC LDL +I + R +EYNP +F +IM+I +PRTT L F SGK++ GAK E D A
Sbjct: 1 LGCQLDLKRIALQARNAEYNPKRFAAVIMRIRSPRTTALIFSSGKMVCTGAKSEEDSIQA 60
Query: 72 SRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 118
+R++A+++++LG P K+ FKI N+V + DV F ++L+AL H+ +
Sbjct: 61 ARRYARVIQKLGFPAKFLDFKIQNMVGSADVSFKIQLEALALKHATY 107
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 114 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
+ ++ + Y P+ F +I R+ PR LIF +G++V TGAKS + +A
Sbjct: 12 LQARNAEYNPKRFAAVIMRIRSPRTTALIFSSGKMVCTGAKSEEDSIQA 60
>gi|448608858|ref|ZP_21660137.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
gi|445747235|gb|ELZ98691.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
Length = 186
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + +G LDL + + +++NP F GL+ + +P+ L F+SGK++
Sbjct: 8 IEIQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D A L++L P+ + NIV + D+ + L+AL + +
Sbjct: 68 GAKSIDDVHDALGIIFDKLRELQIPVDDDPEITVQNIVSSADLGHNLNLNALAIGLGLED 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YRM KP+VV+L+F +G+IVITG K + A + I
Sbjct: 128 VEYEPEQFPGLVYRMDKPKVVILLFGSGKIVITGGKQTDDAATAVEEI 175
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I N+V + + + L+AL + + P+ FPGL+YR P+ LIF +G+IV
Sbjct: 8 IEIQNVVASTGIGQELDLEALAD-DLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS ++H+A I+ L+ +
Sbjct: 67 TGAKSIDDVHDALGIIFDKLRELQ 90
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ P+ L F SGK++
Sbjct: 99 ITVQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLVYRMDKPKVVILLFGSGKIV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G K D A + + + LG
Sbjct: 159 ITGGKQTDDAATAVEEIVERIDALG 183
>gi|399574202|ref|ZP_10767962.1| tata binding protein of transcription factor tfiid [Halogranum
salarium B-1]
gi|399240710|gb|EJN61634.1| tata binding protein of transcription factor tfiid [Halogranum
salarium B-1]
Length = 186
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + +G LDL + + +++NP F GL+ + NP+ L F+SGK++
Sbjct: 8 IEIQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQNPKAAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D A L+ L P++ + NIV + D+ + L+AL + +
Sbjct: 68 GAKSIDDVHEALDIIFDKLRGLSIPVEEDPEITVQNIVSSADLGHNLNLNALAIGLGLED 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YRM +P VV+L+F +G+IVITG K + A + I
Sbjct: 128 VEYEPEQFPGLVYRMDEPEVVILLFGSGKIVITGGKQTDDATTAVEQI 175
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I N+V + + + L+AL + + P+ FPGL+YR P+ LIF +G+IV
Sbjct: 8 IEIQNVVASTGIGQELDLEALAD-DLPGADFNPDNFPGLVYRTQNPKAAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS ++HEA D I+ L+
Sbjct: 67 TGAKSIDDVHEALDIIFDKLRGLS 90
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGK++
Sbjct: 99 ITVQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLVYRMDEPEVVILLFGSGKIV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G K D A + + ++ LG
Sbjct: 159 ITGGKQTDDATTAVEQIVERIENLG 183
>gi|304313987|ref|YP_003849134.1| TATA-box binding protein [Methanothermobacter marburgensis str.
Marburg]
gi|302587446|gb|ADL57821.1| TATA-box binding protein [Methanothermobacter marburgensis str.
Marburg]
Length = 181
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 96/159 (60%), Gaps = 2/159 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + ++G +DL + + ++N +F GL+ K+ P+T L F SGKL+
Sbjct: 6 IKIENIVASATLGKSIDLQTVAEALENVDFNREQFPGLVYKLKEPKTAALIFGSGKLVCT 65
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK D K A + +++ + I + KI NIV + ++ P+ L+A+ + + +
Sbjct: 66 GAKSIEDSKRAIKLTVDMMRTMDPDIPEEFEIKIQNIVASANLGKPLNLEAVA-LGLENT 124
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSE 158
YEPE FPGL+YR+ +P+VVLL+F +G++V TGAKS +
Sbjct: 125 EYEPEQFPGLVYRLDEPKVVLLLFGSGKVVCTGAKSAED 163
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++G PL+L + + +EY P +F GL+ ++ P+ L F SGK++
Sbjct: 97 IKIQNIVASANLGKPLNLEAVALGLENTEYEPEQFPGLVYRLDEPKVVLLLFGSGKVVCT 156
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GAK D KL K L +L
Sbjct: 157 GAKSAEDAKLGVEKTKARLAEL 178
>gi|337284406|ref|YP_004623880.1| transcription factor [Pyrococcus yayanosii CH1]
gi|334900340|gb|AEH24608.1| transcription factor [Pyrococcus yayanosii CH1]
Length = 191
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 101/176 (57%), Gaps = 5/176 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++
Sbjct: 9 LRIENIVASVDLFAQLDLEKVIEICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGF-KIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK D + A K ++LK +G K I N+V + D+ LD + +
Sbjct: 69 GAKSVEDIERAVGKLVQMLKGIGVSFKRAPLIDIQNMVFSGDIGREFNLDTVA-LSLPNC 127
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPE FPG+IYR+ +PR V+L+F +G+IV +GAKS H+A++ + +L+ +K
Sbjct: 128 EYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAKSE---HDAWEAVRKLLRELEK 180
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV + +G +L+ + + EY P +F G+I ++ PR L F SGK++
Sbjct: 100 IDIQNMVFSGDIGREFNLDTVALSLPNCEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCS 159
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK EHD A RK + L++ G
Sbjct: 160 GAKSEHDAWEAVRKLLRELEKYG 182
>gi|391329921|ref|XP_003739415.1| PREDICTED: TATA box-binding protein-like protein 1-like
[Metaseiulus occidentalis]
Length = 284
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 103/177 (58%), Gaps = 10/177 (5%)
Query: 4 QNMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLI 59
N+V + SVGC L+L QI + V + + G++ MK+ NP TT + SGK+
Sbjct: 62 NNVVCSFSVGCHLNLRQIALTGANVVFR-----RESGMVSMKLRNPYTTASIWSSGKITC 116
Query: 60 LGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GA E+ K+A+R+FA+ L++LG +++ FK+ N++ TC + F ++L + +
Sbjct: 117 TGATSENTSKIAARRFARTLQKLGFKARFKNFKVVNVLGTCTMPFAIRLVPFSQTNKPIA 176
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YEPEL PG+ Y++ + R L IF G I +T A S S + ++ + I+P++ +K+
Sbjct: 177 QYEPELHPGVTYKIKEIRASLKIFSTGSITVT-APSVSAVQQSIERIFPLVYEHRKE 232
>gi|448576280|ref|ZP_21642323.1| transcription factor [Haloferax larsenii JCM 13917]
gi|448591579|ref|ZP_21651067.1| transcription factor [Haloferax elongans ATCC BAA-1513]
gi|445729960|gb|ELZ81554.1| transcription factor [Haloferax larsenii JCM 13917]
gi|445733553|gb|ELZ85122.1| transcription factor [Haloferax elongans ATCC BAA-1513]
Length = 186
Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + +G LDL + + +++NP F GL+ + +P+ L F+SGK++
Sbjct: 8 IEIQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D A L++L P+ + + NIV + D+ + L+AL + +
Sbjct: 68 GAKSIDDVHEALGIIFDKLRELKIPVDDEPEITVQNIVSSADLGHNLNLNALAIGLGLED 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YRM +P+VV+L+F +G+IVITG K + A + I
Sbjct: 128 VEYEPEQFPGLVYRMDEPKVVILLFGSGKIVITGGKRTDDAETAVEEI 175
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I N+V + + + L+AL + + P+ FPGL+YR P+ LIF +G+IV
Sbjct: 8 IEIQNVVASTGIGQELDLEALAD-DLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS ++HEA I+ L+ K
Sbjct: 67 TGAKSIDDVHEALGIIFDKLRELK 90
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ P+ L F SGK++
Sbjct: 99 ITVQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLVYRMDEPKVVILLFGSGKIV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G K D + A + + + LG
Sbjct: 159 ITGGKRTDDAETAVEEIVERIDALG 183
>gi|167045405|gb|ABZ10060.1| putative transcription factor TFIID (or TATA-binding protein, TBP)
[uncultured marine crenarchaeote HF4000_APKG10F15]
Length = 186
Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 100/170 (58%), Gaps = 4/170 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + SV +DL + + +E++P +F GL+ ++ +P+T L F+SGK++ G K
Sbjct: 11 ENVVASASVDQAIDLKDVTKKFPETEWHPDQFPGLVFRLKSPKTATLIFRSGKMVCTGGK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKL-DALHHVHSQFSSY 121
E A R K L++ IK + NIV + + + L DA + S Y
Sbjct: 71 SEAMAIKAVRTVVKQLRKGKIKIKKDAVITVQNIVASGSLGGKIHLEDAARRLPR--SMY 128
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLK 171
EPE FPGLI+RMV P+ VLL+F +G++V TGAK S+++++ NI+ +L+
Sbjct: 129 EPEQFPGLIHRMVDPKTVLLLFASGKLVCTGAKKESDVYKSVHNIHALLE 178
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQF--SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + V + L V +F + + P+ FPGL++R+ P+ LIF +G++V
Sbjct: 10 IENVVASASVDQAIDL---KDVTKKFPETEWHPDQFPGLVFRLKSPKTATLIFRSGKMVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFKK 175
TG KS + A + V+K +K
Sbjct: 67 TGGKSEA---MAIKAVRTVVKQLRK 88
>gi|448604603|ref|ZP_21657770.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|448624485|ref|ZP_21670433.1| transcription factor [Haloferax denitrificans ATCC 35960]
gi|445744012|gb|ELZ95492.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|445749690|gb|EMA01132.1| transcription factor [Haloferax denitrificans ATCC 35960]
Length = 186
Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + +G LDL + + +++NP F GL+ + +P+ L F+SGK++
Sbjct: 8 IEIQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D A L++L P+ + + NIV + D+ + L+AL + +
Sbjct: 68 GAKSIDDVHDALGIIFDKLRELQIPVDDEPEITVQNIVSSADLGHNLNLNALAIGLGLED 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YRM +P+VV+L+F +G+IVITG K + A + I
Sbjct: 128 VEYEPEQFPGLVYRMDEPKVVILLFGSGKIVITGGKRTDDAETAVEEI 175
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I N+V + + + L+AL + + P+ FPGL+YR P+ LIF +G+IV
Sbjct: 8 IEIQNVVASTGIGQELDLEALAD-DLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS ++H+A I+ L+ +
Sbjct: 67 TGAKSIDDVHDALGIIFDKLRELQ 90
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ P+ L F SGK++
Sbjct: 99 ITVQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLVYRMDEPKVVILLFGSGKIV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G K D + A + + + LG
Sbjct: 159 ITGGKRTDDAETAVEEIVERIDALG 183
>gi|167043299|gb|ABZ08004.1| putative transcription factor TFIID (or TATA-binding protein, TBP)
[uncultured marine crenarchaeote HF4000_ANIW141M18]
Length = 186
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 100/171 (58%), Gaps = 4/171 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + SV +DL + + +E++P +F GL+ ++ +P+T L F+SGK++ G K
Sbjct: 11 ENVVASASVDQAIDLKDVTKKFPETEWHPDQFPGLVFRLKSPKTATLIFRSGKMVCTGGK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKL-DALHHVHSQFSSY 121
E A R K L++ IK + NIV + + + L DA + S Y
Sbjct: 71 SEAMAIKAVRTVVKQLRKGKIKIKKDAVITVQNIVASGSLGGKIHLEDAARRL--PHSMY 128
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
EPE FPGLI+RMV P+ VLL+F +G++V TGAK S+++++ NI+ +L+
Sbjct: 129 EPEQFPGLIHRMVDPKTVLLLFASGKLVCTGAKKESDVYKSVHNIHALLEE 179
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQF--SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + V + L V +F + + P+ FPGL++R+ P+ LIF +G++V
Sbjct: 10 IENVVASASVDQAIDL---KDVTKKFPETEWHPDQFPGLVFRLKSPKTATLIFRSGKMVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFKK 175
TG KS + A + V+K +K
Sbjct: 67 TGGKSEA---MAIKAVRTVVKQLRK 88
>gi|292655873|ref|YP_003535770.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|433422047|ref|ZP_20405902.1| transcription factor [Haloferax sp. BAB2207]
gi|448289862|ref|ZP_21481024.1| transcription factor [Haloferax volcanii DS2]
gi|448539630|ref|ZP_21623096.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|448555929|ref|ZP_21631787.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|448562556|ref|ZP_21635514.1| transcription factor [Haloferax prahovense DSM 18310]
gi|448570482|ref|ZP_21639312.1| transcription factor [Haloferax lucentense DSM 14919]
gi|448585086|ref|ZP_21647695.1| transcription factor [Haloferax gibbonsii ATCC 33959]
gi|448595442|ref|ZP_21653145.1| transcription factor [Haloferax alexandrinus JCM 10717]
gi|302595861|sp|D4H071.1|TBP2_HALVD RecName: Full=TATA-box-binding protein 2; AltName: Full=Box
A-binding protein 2; Short=BAP 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP 2; AltName:
Full=TATA-box factor 2
gi|291372685|gb|ADE04912.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|432198733|gb|ELK54984.1| transcription factor [Haloferax sp. BAB2207]
gi|445581044|gb|ELY35408.1| transcription factor [Haloferax volcanii DS2]
gi|445710372|gb|ELZ62187.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|445717214|gb|ELZ68934.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|445718874|gb|ELZ70558.1| transcription factor [Haloferax prahovense DSM 18310]
gi|445723129|gb|ELZ74776.1| transcription factor [Haloferax lucentense DSM 14919]
gi|445727425|gb|ELZ79038.1| transcription factor [Haloferax gibbonsii ATCC 33959]
gi|445742896|gb|ELZ94386.1| transcription factor [Haloferax alexandrinus JCM 10717]
Length = 186
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + +G LDL + + +++NP F GL+ + +P+ L F+SGK++
Sbjct: 8 IEIQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D A L++L P+ + + NIV + D+ + L+AL + +
Sbjct: 68 GAKSIDDVHDALGIIFDKLRELKIPVDDEPEITVQNIVSSADLGHNLNLNALAIGLGLED 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YRM +P+VV+L+F +G+IVITG K + A + I
Sbjct: 128 VEYEPEQFPGLVYRMDEPKVVILLFGSGKIVITGGKRTDDAETAVEEI 175
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I N+V + + + L+AL + + P+ FPGL+YR P+ LIF +G+IV
Sbjct: 8 IEIQNVVASTGIGQELDLEALAD-DLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS ++H+A I+ L+ K
Sbjct: 67 TGAKSIDDVHDALGIIFDKLRELK 90
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ P+ L F SGK++
Sbjct: 99 ITVQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLVYRMDEPKVVILLFGSGKIV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G K D + A + + + LG
Sbjct: 159 ITGGKRTDDAETAVEEIVERIDALG 183
>gi|88601869|ref|YP_502047.1| transcription factor [Methanospirillum hungatei JF-1]
gi|88187331|gb|ABD40328.1| TATA binding protein of transcription factor TFIID
[Methanospirillum hungatei JF-1]
Length = 186
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 97/175 (55%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + + LDL QI S ++ +EYN +F G+++++ NP+ L F SGK+++
Sbjct: 9 LRIENIVASAKISESLDLPQIASSIKDAEYNKKRFPGVVIRMQNPKIAALVFGSGKVVLT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK +L+ L I + +KI NIV + D+ + L+ + + +
Sbjct: 69 GAKSVESLNKGLEILGDLLRSLNIEIASELTYKIQNIVTSADLGSGINLNKIAVGFNLER 128
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P+VV+L+F +G+++ITG K + +A I LK
Sbjct: 129 IEYEPEQFPGLVYRLEDPKVVVLLFGSGKLIITGGKEPEDAKKAVLKIVDDLKGL 183
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINS--RVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G ++LN+I + EY P +F GL+ ++ +P+ L F SGKL+I G
Sbjct: 103 QNIVTSADLGSGINLNKIAVGFNLERIEYEPEQFPGLVYRLEDPKVVVLLFGSGKLIITG 162
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D K A K LK LG
Sbjct: 163 GKEPEDAKKAVLKIVDDLKGLG 184
>gi|167044379|gb|ABZ09056.1| putative transcription factor TFIID (or TATA-binding protein, TBP)
[uncultured marine crenarchaeote HF4000_APKG6D3]
Length = 186
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 100/171 (58%), Gaps = 4/171 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + SV +DL + + +E++P +F GL+ ++ +P+T L F+SGK++ G K
Sbjct: 11 ENVVASASVDQAIDLKDVTKKFPETEWHPEQFPGLVFRLKSPKTATLIFRSGKMVCTGGK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKL-DALHHVHSQFSSY 121
E A R K L++ IK + NIV + + + L DA + S Y
Sbjct: 71 SEAMAIKAVRTVVKQLRKGKIKIKKDAVITVQNIVASGSLGGKIHLEDAARRLPR--SMY 128
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
EPE FPGLI+RMV P+ VLL+F +G++V TGAK S+++++ NI+ +L+
Sbjct: 129 EPEQFPGLIHRMVDPKTVLLLFASGKLVCTGAKKESDVYKSVHNIHALLEE 179
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQF--SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + V + L V +F + + PE FPGL++R+ P+ LIF +G++V
Sbjct: 10 IENVVASASVDQAIDL---KDVTKKFPETEWHPEQFPGLVFRLKSPKTATLIFRSGKMVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFKK 175
TG KS + A + V+K +K
Sbjct: 67 TGGKSEA---MAIKAVRTVVKQLRK 88
>gi|15679622|ref|NP_276739.1| transcription factor [Methanothermobacter thermautotrophicus str.
Delta H]
gi|6647868|sp|O27664.1|TBP_METTH RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|2622753|gb|AAB86100.1| TATA-binding transcription initiation factor [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 181
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 95/159 (59%), Gaps = 2/159 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + ++G +DL + + ++N +F GL+ K+ P+T L F SGKL+
Sbjct: 6 IKIENIVASATLGKSIDLQTVAEALENVDFNREQFPGLVYKLKEPKTAALIFGSGKLVCT 65
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK D K A + +++ + I + KI NIV + ++ P+ L+A+ + + +
Sbjct: 66 GAKSIEDSKRAIKLTVDMMRTMDPDIPEEFEIKIQNIVASANLGKPLNLEAVA-LGLENT 124
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSE 158
YEPE FPGL+YR+ P+VVLL+F +G++V TGAKS +
Sbjct: 125 EYEPEQFPGLVYRLDDPKVVLLLFGSGKVVCTGAKSAED 163
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++G PL+L + + +EY P +F GL+ ++ +P+ L F SGK++
Sbjct: 97 IKIQNIVASANLGKPLNLEAVALGLENTEYEPEQFPGLVYRLDDPKVVLLLFGSGKVVCT 156
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GAK D KL K L +L
Sbjct: 157 GAKSAEDAKLGVEKTKARLAEL 178
>gi|429193145|ref|YP_007178823.1| TATA-box binding protein [Natronobacterium gregoryi SP2]
gi|448327012|ref|ZP_21516352.1| transcription factor [Natronobacterium gregoryi SP2]
gi|429137363|gb|AFZ74374.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronobacterium gregoryi SP2]
gi|445609541|gb|ELY63341.1| transcription factor [Natronobacterium gregoryi SP2]
Length = 185
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 1/164 (0%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + +G LDL + + EY+P F G + +I +P+ L F+SGK++ GAK
Sbjct: 11 ENVVASTGIGQELDLGPVAMDLEGVEYDPELFPGAVYRIDDPKAALLLFRSGKIVCTGAK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSSYE 122
D + A + L+ L P++ G + NIV + D+ + L+A+ + + YE
Sbjct: 71 STDDMRRAVEIVFEKLRDLSIPVEPDGVTVQNIVSSADLGHHLNLNAIAIGLGLENIEYE 130
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
PE FPGL+YR+ P VVLL+F +G+IVITG + + +A +
Sbjct: 131 PEQFPGLVYRIDDPDVVLLLFGSGKIVITGGEQPDDAEQAVGQV 174
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 11/89 (12%)
Query: 91 FKIHNIVCTCDVR-----FPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVN 145
I N+V + + PV +D L V Y+PELFPG +YR+ P+ LL+F +
Sbjct: 8 ITIENVVASTGIGQELDLGPVAMD-LEGVE-----YDPELFPGAVYRIDDPKAALLLFRS 61
Query: 146 GRIVITGAKSRSELHEAFDNIYPVLKSFK 174
G+IV TGAKS ++ A + ++ L+
Sbjct: 62 GKIVCTGAKSTDDMRRAVEIVFEKLRDLS 90
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ +I +P L F SGK++I G
Sbjct: 101 QNIVSSADLGHHLNLNAIAIGLGLENIEYEPEQFPGLVYRIDDPDVVLLLFGSGKIVITG 160
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
+ D + A + L +LG
Sbjct: 161 GEQPDDAEQAVGQVRNRLGELG 182
>gi|170291079|ref|YP_001737895.1| TATA-box binding family protein [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170175159|gb|ACB08212.1| TATA-box binding family protein [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 211
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 96/170 (56%), Gaps = 6/170 (3%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V + + LDL++I+ R++ S Y+P KF GL++KI P+ L F SGK + G K
Sbjct: 36 QNVVSSADIRQRLDLHEISRRIKKSRYDPEKFPGLVLKIDEPKAALLLFSSGKFVCTGTK 95
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
+ A ++L++ H I+ +G K NIV + + V ++ L + + +
Sbjct: 96 SVEESAKAINAAIEVLQK--HGIEVKGRPLIKAENIVASAKLHVKVDIERL-ALELENTL 152
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVL 170
YEPE FPGLI+RM P VV LIF +G +V TGAK S++ A + +L
Sbjct: 153 YEPEQFPGLIFRMKDPDVVFLIFASGSLVCTGAKKESDVRRAVYKLRDIL 202
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 9/100 (9%)
Query: 74 KFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF--SSYEPELFPGLIY 131
+ +ILK + P I N+V + D+R +LD LH + + S Y+PE FPGL+
Sbjct: 20 RIQRILKNIREP----EIAIQNVVSSADIR--QRLD-LHEISRRIKKSRYDPEKFPGLVL 72
Query: 132 RMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLK 171
++ +P+ LL+F +G+ V TG KS E +A + VL+
Sbjct: 73 KIDEPKAALLLFSSGKFVCTGTKSVEESAKAINAAIEVLQ 112
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + + +D+ ++ + + Y P +F GLI ++ +P L F SG L+
Sbjct: 124 IKAENIVASAKLHVKVDIERLALELENTLYEPEQFPGLIFRMKDPDVVFLIFASGSLVCT 183
Query: 61 GAKHEHDCKLASRKFAKILKQLGH 84
GAK E D + A K IL + G+
Sbjct: 184 GAKKESDVRRAVYKLRDILARKGY 207
>gi|282162800|ref|YP_003355185.1| TATA-box-binding protein [Methanocella paludicola SANAE]
gi|282155114|dbj|BAI60202.1| TATA-box-binding protein [Methanocella paludicola SANAE]
Length = 188
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 98/175 (56%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + ++G +DL + + ++Y+P +F GL+ + +P+T L F+SGK++
Sbjct: 11 ITIENVVASTAIGQEIDLKSVTLALEGADYDPEQFPGLVYRTKDPKTAALIFRSGKIVCT 70
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D +K K + +G + + NIV + D+ + L+A+ + +
Sbjct: 71 GAKSIEDVDRGLKKVFKKMDSVGIKVDQNPEITVQNIVASADLGSVLNLNAIAIGLGLEN 130
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P+VV+L+F +G++V+TG K + EA D I L+
Sbjct: 131 IEYEPEQFPGLVYRLDHPKVVVLLFGSGKLVVTGGKKPKDAEEAVDRIVKELEGL 185
>gi|147920361|ref|YP_685866.1| transcription factor [Methanocella arvoryzae MRE50]
gi|110621262|emb|CAJ36540.1| TATA-box binding protein E [Methanocella arvoryzae MRE50]
Length = 188
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 99/175 (56%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + ++G +DL + + ++Y+P +F GL+ + +P+T L F+SGK++
Sbjct: 11 ITIENVVASTAIGQEIDLKSVTLALDGADYDPEQFPGLVYRTKDPKTAALIFRSGKIVCT 70
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D +K K + +G + + NIV + D+ + L+A+ + +
Sbjct: 71 GAKSIEDVDRGLKKVFKKMDSVGIKVADNPEITVQNIVASADLGSVLNLNAIAIGLGLEN 130
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P+VV+L+F +G++V+TG K + EA D I L+
Sbjct: 131 IEYEPEQFPGLVYRIDQPKVVVLLFGSGKLVVTGGKKPKDAEEAVDRIVRELEGL 185
>gi|195355070|ref|XP_002044016.1| GM21561 [Drosophila sechellia]
gi|194129269|gb|EDW51312.1| GM21561 [Drosophila sechellia]
Length = 278
Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 98/169 (57%), Gaps = 6/169 (3%)
Query: 11 SVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAKHEHDCK 69
SVGC L L I + EY + +G++ MK+ +P TT + SG++ GA E K
Sbjct: 7 SVGCHLKLRDIALQGSNVEYR--RENGMVTMKLRHPYTTASIWSSGRITCTGATSESMAK 64
Query: 70 LASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGL 129
+A+R++A+ L +LG P ++ F+I N++ TC + + +K+ H + +SYEPEL PG+
Sbjct: 65 VAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEPELHPGV 124
Query: 130 IYRMV--KPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
Y+M P+ L IF G + +T A S + + A +IYP++ F+KQ
Sbjct: 125 TYKMRDPDPKATLKIFSTGSVTVTAA-SVNHVESAIQHIYPLVFDFRKQ 172
>gi|112980821|gb|ABI29192.1| TATA box binding protein [Sus scrofa]
Length = 65
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 58/61 (95%)
Query: 115 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
H QFSSYEPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+
Sbjct: 3 HQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFR 62
Query: 175 K 175
K
Sbjct: 63 K 63
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 26 RYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 80
++S Y P F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 5 QFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 59
>gi|118638408|gb|ABL09363.1| TATA-box binding protein, partial [Mus musculus]
Length = 64
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 58/61 (95%)
Query: 115 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
H QFSSYEPELFPGLIYRM+KPR+VLLIFV+G++V+TGAK R+E++EAF+NIYP+LK F+
Sbjct: 2 HQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFR 61
Query: 175 K 175
K
Sbjct: 62 K 62
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 26 RYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 80
++S Y P F GLI +++ PR L F SGK+++ GAK + A ILK
Sbjct: 4 QFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILK 58
>gi|294496460|ref|YP_003542953.1| TATA binding protein of transcription factor TFIID
[Methanohalophilus mahii DSM 5219]
gi|292667459|gb|ADE37308.1| TATA binding protein of transcription factor TFIID
[Methanohalophilus mahii DSM 5219]
Length = 183
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 93/166 (56%), Gaps = 2/166 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + + DL +I + +EYN KF GL+ ++ NP+ L F SGK++
Sbjct: 6 IKIENVVASTKLAEEFDLTKIEAEFEGAEYNKQKFPGLVYRVSNPKAAFLVFTSGKVVCT 65
Query: 61 GAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK+ D AK L +G ++ + NIV + D++ + L+A+ + +
Sbjct: 66 GAKNVDDVHTVIADMAKKLNGIGIDTLEKPDITVQNIVASADLKAVLNLNAIAIGLGLEN 125
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFD 164
YEPE FPGL+YR+ +P+VV+LIF +G++V+TG KS E +
Sbjct: 126 IEYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVTGGKSPENCEEGVE 171
>gi|435850312|ref|YP_007311898.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanomethylovorans hollandica DSM 15978]
gi|433660942|gb|AGB48368.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanomethylovorans hollandica DSM 15978]
Length = 183
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + + DL +I + +EYN KF GL+ ++ P+ L F SGK++
Sbjct: 6 IKIENVVASTKLADEFDLTKIEAEFEGAEYNKQKFPGLVYRVSEPKAAFLVFTSGKVVCT 65
Query: 61 GAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK+ D AK L ++G IK + NIV + D+ + L+A+ + +
Sbjct: 66 GAKNVADVHTVISNMAKKLNEIGIKTIKEPEITVQNIVASADLHAVLNLNAIAIGLGLEN 125
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ KP+VV+LIF +G++V+TG K+ E + + L S
Sbjct: 126 IEYEPEQFPGLVYRIDKPKVVVLIFSSGKLVVTGGKTPENCAEGVEVVKQQLDSM 180
>gi|407465522|ref|YP_006776404.1| TATA-box binding family protein [Candidatus Nitrosopumilus sp. AR2]
gi|407048710|gb|AFS83462.1| TATA-box binding family protein [Candidatus Nitrosopumilus sp. AR2]
Length = 187
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + SV +DL +I + +EY+P +F GL+ ++ NPRT L F++GK++ GAK
Sbjct: 11 ENVVASASVDQKIDLIEITEKFPDTEYHPEQFPGLVFRLTNPRTATLIFRTGKMVCTGAK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E A + L++ IK + NIV ++ + L+ + S YE
Sbjct: 71 SEEMAIKAVNTVVQKLRKGKIKIKKDAVITVQNIVAAINLGGKIHLEKAARTLPR-SMYE 129
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
PE FPGLI+RM+ P+ V+L+F +G++V TGAK S+++ + N++ +L+
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESDVYRSVHNLHALLEE 179
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQF--SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+ N+V + V K+D L + +F + Y PE FPGL++R+ PR LIF G++V
Sbjct: 10 VENVVASASVD--QKID-LIEITEKFPDTEYHPEQFPGLVFRLTNPRTATLIFRTGKMVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS +A + + L+ K
Sbjct: 67 TGAKSEEMAIKAVNTVVQKLRKGK 90
>gi|410916287|ref|XP_003971618.1| PREDICTED: TATA box-binding protein-like protein 1-like [Takifugu
rubripes]
Length = 185
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 95/172 (55%), Gaps = 2/172 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
N+V T + GC LDL+ I S+ + Y P K + M++ PR T + SGK++ +GA
Sbjct: 14 SNVVATFTTGCRLDLHTIGSKGKNVIYKP-KQGTVTMQLRKPRITANIWASGKVICIGAS 72
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KL +R+ A+ L++LG + + FK+ N++ TC + F + L ++ ++YEP
Sbjct: 73 SEADAKLGARRIARCLQKLGFGVTFGTFKVVNVMATCSMPFKISLVDFTMMNRFRATYEP 132
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EL P +Y M +P+ + + G + I A S + A ++YP+L ++
Sbjct: 133 ELHPAALYTMKEPKATIKAYATGSVTIL-APSMGNVAAAVQHVYPLLSECRR 183
>gi|448620717|ref|ZP_21667964.1| transcription factor [Haloferax denitrificans ATCC 35960]
gi|445756678|gb|EMA08044.1| transcription factor [Haloferax denitrificans ATCC 35960]
Length = 188
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++G LDL +++ V +E+NP F GL+ + P+ L F+SGK++
Sbjct: 10 LEIQNVVASSAIGQELDLESLSNDVTGAEFNPDNFPGLVYRTQEPKAANLIFRSGKIVCT 69
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKY-QGFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GA A + + L LG PI + + NIV + D+ + L+AL + +
Sbjct: 70 GASSIDGVNRALDQVFEELGSLGIPIDNREEATVQNIVSSADLGTTLNLNALAIGLGLEN 129
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P VV+L+F +G+IVITGAK EA + + S
Sbjct: 130 VEYEPEQFPGLVYRIDEPNVVVLLFGSGKIVITGAKKVEFAREAIQVVSDEIDSL 184
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 82 LGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLL 141
+ H + + +I N+V + + + L++L + + + P+ FPGL+YR +P+ L
Sbjct: 1 MSHETRLESLEIQNVVASSAIGQELDLESLSN-DVTGAEFNPDNFPGLVYRTQEPKAANL 59
Query: 142 IFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
IF +G+IV TGA S ++ A D ++ L S
Sbjct: 60 IFRSGKIVCTGASSIDGVNRALDQVFEELGSL 91
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ +I P L F SGK++I G
Sbjct: 104 QNIVSSADLGTTLNLNALAIGLGLENVEYEPEQFPGLVYRIDEPNVVVLLFGSGKIVITG 163
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
AK + A + + + LG
Sbjct: 164 AKKVEFAREAIQVVSDEIDSLG 185
>gi|325959799|ref|YP_004291265.1| TATA-box-binding protein [Methanobacterium sp. AL-21]
gi|325331231|gb|ADZ10293.1| TATA-box-binding protein [Methanobacterium sp. AL-21]
Length = 181
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 93/156 (59%), Gaps = 2/156 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + ++G LDL Q+ + EYN +F GL+ K+ P+T L F SGKL+
Sbjct: 6 IKVENIVASAALGKSLDLPQVAPALEGVEYNSEQFPGLVYKLKEPKTAALIFGSGKLVCT 65
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK D K A ++ L I ++ KI NIV + ++ + L+++ + + +
Sbjct: 66 GAKSIEDSKKAIHIAVDKMRALDTEIPHEFEIKIQNIVASANLGKTLNLESV-ALDLENT 124
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKS 155
YEPE FPGL+YR+ P+VVLL+F +G++V TGAKS
Sbjct: 125 EYEPEQFPGLVYRLDDPKVVLLLFGSGKVVCTGAKS 160
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++G L+L + + +EY P +F GL+ ++ +P+ L F SGK++
Sbjct: 97 IKIQNIVASANLGKTLNLESVALDLENTEYEPEQFPGLVYRLDDPKVVLLLFGSGKVVCT 156
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GAK D +L K + L +L
Sbjct: 157 GAKSFEDAQLGVEKTKERLAEL 178
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 91 FKIHNIVCTC----DVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNG 146
K+ NIV + + P AL V Y E FPGL+Y++ +P+ LIF +G
Sbjct: 6 IKVENIVASAALGKSLDLPQVAPALEGVE-----YNSEQFPGLVYKLKEPKTAALIFGSG 60
Query: 147 RIVITGAK----SRSELHEAFDNI 166
++V TGAK S+ +H A D +
Sbjct: 61 KLVCTGAKSIEDSKKAIHIAVDKM 84
>gi|126179334|ref|YP_001047299.1| transcription factor [Methanoculleus marisnigri JR1]
gi|125862128|gb|ABN57317.1| TATA binding protein of transcription factor TFIID [Methanoculleus
marisnigri JR1]
Length = 187
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 98/175 (56%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + V LDL + SR++ +EYN +F G+++++ +P+ L F SGK+++
Sbjct: 10 LKIENIVASAKVTDSLDLPSLASRLKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVLT 69
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK + + A L+ L I + +KI NIV + D+ P+ L+ + +
Sbjct: 70 GAKSIDNLSRGLQILADQLRALDIDIPENPEYKIQNIVTSADLGTPINLNKIAVGFNLDK 129
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P+VV+L+F +G+++ITG K + A I L S
Sbjct: 130 IEYEPEQFPGLVYRLDDPKVVVLLFGSGKLIITGGKVPEDAQRAVKRILSELSSL 184
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G P++LN+I EY P +F GL+ ++ +P+ L F SGKL+I G
Sbjct: 104 QNIVTSADLGTPINLNKIAVGFNLDKIEYEPEQFPGLVYRLDDPKVVVLLFGSGKLIITG 163
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D + A ++ L LG
Sbjct: 164 GKVPEDAQRAVKRILSELSSLG 185
>gi|357625409|gb|EHJ75865.1| tata-box binding protein [Danaus plexippus]
Length = 314
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 104/172 (60%), Gaps = 5/172 (2%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 63
N+V + SV C L+L QI E+ + +G++ MK+ P TT + SG++ GA
Sbjct: 93 NVVCSFSVKCHLNLRQIALNGVNVEFR--RENGMVTMKLRRPYTTASIWSSGRVTCTGAT 150
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E K+A+R++A+ L++LG ++++ F++ N++ TC + F +++ A + + + YEP
Sbjct: 151 SEDQAKVAARRYARALQKLGFQVRFRNFRVVNVLGTCRMPFGIRIIAFSKKYKE-ADYEP 209
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EL PG+ Y++ P+ L IF G + IT A+S S++ A + I+P++ F+K
Sbjct: 210 ELHPGVTYKLYNPKATLKIFSTGGVTIT-ARSVSDVQSAVERIFPLVYEFRK 260
>gi|386001066|ref|YP_005919365.1| TATA-box-binding protein [Methanosaeta harundinacea 6Ac]
gi|357209122|gb|AET63742.1| TATA-box-binding protein [Methanosaeta harundinacea 6Ac]
Length = 183
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + + DL +I + + +EYN KF GL+ ++ +PR L F SGK++
Sbjct: 5 INIENVVASTKLAEEFDLIKIEAELEGAEYNKEKFPGLVYRVKSPRAAFLIFTSGKVVCT 64
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIH--NIVCTCDVRFPVKLDALH-HVHSQ 117
GAK+ D + A+ LK +G +IH NIV + D++ + +A+ + +
Sbjct: 65 GAKNVEDVRTVITNMAQTLKSIGFEDVNLDPEIHVQNIVASADLKTDLNPNAIALGLGLE 124
Query: 118 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
YEPE FPGL+YR+ P+VV+LIF +G++V+TG KS E E
Sbjct: 125 NIEYEPEQFPGLVYRIKTPKVVVLIFSSGKLVVTGGKSPEECEEG 169
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 93 IHNIVCTCDVRFPVKLDALH-HVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
I N+V + + + D + + + Y E FPGL+YR+ PR LIF +G++V T
Sbjct: 7 IENVVAST--KLAEEFDLIKIEAELEGAEYNKEKFPGLVYRVKSPRAAFLIFTSGKVVCT 64
Query: 152 GAKSRSELHEAFDNIYPVLKSF 173
GAK+ ++ N+ LKS
Sbjct: 65 GAKNVEDVRTVITNMAQTLKSI 86
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+H QN+V + + L+ N I + EY P +F GL+ +I P+ L F SGKL+
Sbjct: 97 IHVQNIVASADLKTDLNPNAIALGLGLENIEYEPEQFPGLVYRIKTPKVVVLIFSSGKLV 156
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
+ G K +C+ + L+ LG
Sbjct: 157 VTGGKSPEECEEGVKIVRVQLENLG 181
>gi|452207285|ref|YP_007487407.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
gi|452083385|emb|CCQ36676.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
Length = 187
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + +G L L ++ + SEYNP F GLI +I P L F+SGK++
Sbjct: 8 IDIENVVASTDIGQELALERLAMDLSGSEYNPDTFPGLIYRIQEPEAANLIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GA D + + + L+ LG I+ + NIV + D+R + L+A+ +
Sbjct: 68 GANTVDDVHSSLQTVCETLRDLGIDVIEAPTITVQNIVFSADLRAQLNLNAIAIGFGLED 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YR+ P VV L+F +G++VITG K+ EA + I
Sbjct: 128 VEYEPEQFPGLVYRLDTPDVVTLLFSSGKVVITGTKTPDAAEEALEKI 175
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + D+ + L+ L S S Y P+ FPGLIYR+ +P LIF +G+IV
Sbjct: 8 IDIENVVASTDIGQELALERLAMDLSG-SEYNPDTFPGLIYRIQEPEAANLIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSF 173
TGA + ++H + + L+
Sbjct: 67 TGANTVDDVHSSLQTVCETLRDL 89
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + + L+LN I + EY P +F GL+ ++ P L F SGK++
Sbjct: 99 ITVQNIVFSADLRAQLNLNAIAIGFGLEDVEYEPEQFPGLVYRLDTPDVVTLLFSSGKVV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G K + A K + L +LG
Sbjct: 159 ITGTKTPDAAEEALEKISGKLSELG 183
>gi|407464492|ref|YP_006775374.1| 2-alkenal reductase [Candidatus Nitrosopumilus sp. AR2]
gi|407047680|gb|AFS82432.1| 2-alkenal reductase [Candidatus Nitrosopumilus sp. AR2]
Length = 186
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + V +DLN+I EY+P +F GL+ ++ P+T L F SGK++ G+K
Sbjct: 11 ENVVASADVMQKMDLNEITRTFPDVEYHPDQFPGLVFRLKTPKTATLIFTSGKMVCTGSK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGF-KIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E + A + + L++ G +K I NIV + ++ + L+ + S YE
Sbjct: 71 SEEMARKAVKTVVQKLRKGGIKVKKDAVVTIQNIVASINLGGKIHLEQAARTLPR-SMYE 129
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
PE FPGLI+RM+ P+ V+L+F +G++V TGAK +++ + +N++ +L+ K
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFSSGKLVCTGAKQEPDVYRSVNNLHALLEEKK 181
>gi|374719192|gb|AEZ67282.1| TBP, partial [Eidolon helvum]
gi|374719194|gb|AEZ67283.1| TBP, partial [Myotis daubentonii]
gi|374719196|gb|AEZ67284.1| TBP, partial [Pipistrellus sp. DR-2011]
Length = 96
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 67/94 (71%)
Query: 18 LNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAK 77
L I R R +EYNP +F +IM+I PRTT L F SGK++ GAK E +LA+RK+A+
Sbjct: 1 LKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYAR 60
Query: 78 ILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDAL 111
++++LG P K+ FKI N+V +CDV+FP++L+ L
Sbjct: 61 VVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGL 94
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 114 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSE 158
+ ++ + Y P+ F +I R+ +PR LIF +G++V TGAKS +
Sbjct: 6 LRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQ 50
>gi|313126218|ref|YP_004036488.1| tata binding protein of transcription factor tfiid [Halogeometricum
borinquense DSM 11551]
gi|448286060|ref|ZP_21477295.1| transcription factor [Halogeometricum borinquense DSM 11551]
gi|312292583|gb|ADQ67043.1| TATA binding protein of transcription factor TFIID [Halogeometricum
borinquense DSM 11551]
gi|445575111|gb|ELY29590.1| transcription factor [Halogeometricum borinquense DSM 11551]
Length = 186
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + +G LDL + + +++NP F GL+ + +P+ L F+SGK++
Sbjct: 8 IEIQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D A L+ L P+ + NIV + D+ + L+AL + +
Sbjct: 68 GAKSIDDVHEALGIIFDKLRGLSIPVDEDPEITVQNIVSSADLGHNLNLNALAIGLGLED 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YRM +P VV+L+F +G+IVITG K ++ A + I
Sbjct: 128 VEYEPEQFPGLVYRMDEPEVVILLFGSGKIVITGGKQTNDAETAVEEI 175
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I N+V + + + L+AL + + P+ FPGL+YR P+ LIF +G+IV
Sbjct: 8 IEIQNVVASTGIGQELDLEALAD-DLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS ++HEA I+ L+
Sbjct: 67 TGAKSIDDVHEALGIIFDKLRGLS 90
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGK++
Sbjct: 99 ITVQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLVYRMDEPEVVILLFGSGKIV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G K +D + A + K + LG
Sbjct: 159 ITGGKQTNDAETAVEEIVKRIDNLG 183
>gi|195964300|gb|ACG60161.1| TATA binding protein [Notothenia coriiceps]
Length = 171
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 67/96 (69%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 74 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 133
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIV 97
AK E +LA+RK+A+++++LG P K+ FKI N+V
Sbjct: 134 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMV 169
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 92 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
++ NIV T ++ + L + + ++ + Y P+ F +I R+ +PR LIF +G++V T
Sbjct: 74 QLQNIVSTVNLGCKLDLKTIA-LRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 132
Query: 152 GAKSRSE 158
GAKS +
Sbjct: 133 GAKSEEQ 139
>gi|195964302|gb|ACG60162.1| TATA binding protein [Chionodraco rastrospinosus]
Length = 173
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 67/96 (69%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 76 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCAG 135
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIV 97
AK E +LA+RK+A+++++LG P K+ FKI N+V
Sbjct: 136 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMV 171
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 92 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
++ NIV T ++ + L + + ++ + Y P+ F +I R+ +PR LIF +G++V
Sbjct: 76 QLQNIVSTVNLGCKLDLKTIA-LRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCA 134
Query: 152 GAKSRSE 158
GAKS +
Sbjct: 135 GAKSEEQ 141
>gi|448498781|ref|ZP_21610993.1| transcription factor [Halorubrum coriense DSM 10284]
gi|445698147|gb|ELZ50197.1| transcription factor [Halorubrum coriense DSM 10284]
Length = 186
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + +G LDL + + +++NP F GL+ + P+ L F+SGK++
Sbjct: 8 IEIQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D A + L+ L P++ + NIV + D+ + L+AL + +
Sbjct: 68 GAKSIDDVHEALGIIFEKLRGLQIPVEDDPEITVQNIVSSADLGHNLNLNALAIGLGLED 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YRM +P VV+L+F +G+IVITG K + EA I
Sbjct: 128 VEYEPEQFPGLVYRMDEPEVVILLFGSGKIVITGGKRTDDAEEAVKEI 175
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I N+V + + + L+AL + + P+ FPGL+YR +P+ LIF +G+IV
Sbjct: 8 IEIQNVVASTGIGQELDLEALAE-DLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS ++HEA I+ L+ +
Sbjct: 67 TGAKSIDDVHEALGIIFEKLRGLQ 90
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGK++
Sbjct: 99 ITVQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLVYRMDEPEVVILLFGSGKIV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G K D + A ++ + ++ LG
Sbjct: 159 ITGGKRTDDAEEAVKEIVERIEGLG 183
>gi|298675995|ref|YP_003727745.1| TATA-box-binding family protein [Methanohalobium evestigatum
Z-7303]
gi|298288983|gb|ADI74949.1| TATA-box binding family protein [Methanohalobium evestigatum
Z-7303]
Length = 187
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 89/154 (57%), Gaps = 2/154 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + + DL +I + +EYN KF GL+ ++ NP+ L F SGK++ GAK
Sbjct: 13 ENVVASTKLAEEFDLTKIEAEFEGAEYNKQKFPGLVYRVSNPKAAFLVFTSGKVVCTGAK 72
Query: 64 HEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSSY 121
+ D + AK L +G IK + NIV + D+ + L+A+ + + Y
Sbjct: 73 NVDDVHVVIGNMAKKLNDIGIETIKDPVITVQNIVASADLHAVLNLNAIAIGLGLENIEY 132
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKS 155
EPE FPGL+YR+ P+VV+LIF +G++V+TG KS
Sbjct: 133 EPEQFPGLVYRIDDPKVVVLIFSSGKLVVTGGKS 166
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQF--SSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
KI N+V + + + D L + ++F + Y + FPGL+YR+ P+ L+F +G++
Sbjct: 10 IKIENVVAST--KLAEEFD-LTKIEAEFEGAEYNKQKFPGLVYRVSNPKAAFLVFTSGKV 66
Query: 149 VITGAKSRSELHEAFDNI 166
V TGAK+ ++H N+
Sbjct: 67 VCTGAKNVDDVHVVIGNM 84
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + + L+LN I + EY P +F GL+ +I +P+ L F SGKL++ G
Sbjct: 104 QNIVASADLHAVLNLNAIAIGLGLENIEYEPEQFPGLVYRIDDPKVVVLIFSSGKLVVTG 163
Query: 62 AKHEHDCK 69
K C+
Sbjct: 164 GKSPDHCE 171
>gi|110668436|ref|YP_658247.1| transcription factor [Haloquadratum walsbyi DSM 16790]
gi|385803899|ref|YP_005840299.1| TATA-binding transcription initiation factor [Haloquadratum walsbyi
C23]
gi|109626183|emb|CAJ52639.1| TATA-binding transcription initiation factor [Haloquadratum walsbyi
DSM 16790]
gi|339729391|emb|CCC40639.1| TATA-binding transcription initiation factor [Haloquadratum walsbyi
C23]
Length = 186
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + +G LDL + + +++NP F GL+ + P+ L F+SGK++
Sbjct: 8 IEIQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK +D A + L+ L P+ + NIV + D+ + L+AL + +
Sbjct: 68 GAKSINDVHDALGIIFEKLRGLSIPVDEDPEITVQNIVSSADLGHTLNLNALAIGLGLED 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YRM +P VV+L+F +G+IVITG K ++ A + I
Sbjct: 128 VEYEPEQFPGLVYRMDQPEVVILLFGSGKIVITGGKQTNDAAAAVEEI 175
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I N+V + + + L+AL + + P+ FPGL+YR +P+ LIF +G+IV
Sbjct: 8 IEIQNVVASTGIGQELDLEALAE-DLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS +++H+A I+ L+
Sbjct: 67 TGAKSINDVHDALGIIFEKLRGLS 90
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGK++
Sbjct: 99 ITVQNIVSSADLGHTLNLNALAIGLGLEDVEYEPEQFPGLVYRMDQPEVVILLFGSGKIV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G K +D A + + ++ LG
Sbjct: 159 ITGGKQTNDAAAAVEEIVERIEDLG 183
>gi|386874609|ref|ZP_10116844.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
gi|386807582|gb|EIJ66966.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
Length = 187
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + SV +DL I + +EY+P +F GL+ ++ NPRT L F++GK++ GAK
Sbjct: 11 ENVVASASVDQKIDLITITEKFPDTEYHPEQFPGLVFRLTNPRTATLIFRTGKMVCTGAK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E A + L++ IK + NIV ++ + L+ + S YE
Sbjct: 71 SEEMAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTLPR-SMYE 129
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
PE FPGLI+RM+ P+ V+L+F +G++V TGAK S+++ + N++ +L+
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFASGKLVCTGAKKESDVYRSVHNLHALLEE 179
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
+ N+V + V + L + + Y PE FPGL++R+ PR LIF G++V TG
Sbjct: 10 VENVVASASVDQKIDLITITEKFPD-TEYHPEQFPGLVFRLTNPRTATLIFRTGKMVCTG 68
Query: 153 AKSRSELHEAFDNIYPVLKSFK 174
AKS +A + + L+ K
Sbjct: 69 AKSEEMAIKAVNTVVQKLRKGK 90
>gi|310752315|gb|ADP09476.1| TATA-box binding protein [uncultured marine crenarchaeote E48-1C]
Length = 186
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 97/160 (60%), Gaps = 2/160 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + ++ +DLN + EY P +F GL+ ++ P+T L F SGK++ GAK
Sbjct: 11 ENVVASATLNQKVDLNAVVKSYPIVEYRPEQFPGLVFRLKRPKTATLIFNSGKMVCTGAK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E + + A +K K LK+ G I + KI NIV + ++ + L+A + + + YE
Sbjct: 71 SEKEARRAVKKVIKELKKGGIIIIGKPELKIQNIVASANLGGMIDLEA-STLSLKKTMYE 129
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
PE FPGLIYRM +P+VV+L+F +G++V TGAK +++A
Sbjct: 130 PEQFPGLIYRMAEPKVVILLFASGKLVCTGAKREQNVYDA 169
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++G +DL ++ + Y P +F GLI ++ P+ L F SGKL+
Sbjct: 99 LKIQNIVASANLGGMIDLEASTLSLKKTMYEPEQFPGLIYRMAEPKVVILLFASGKLVCT 158
Query: 61 GAKHEHDC 68
GAK E +
Sbjct: 159 GAKREQNV 166
>gi|374628586|ref|ZP_09700971.1| TATA binding protein of transcription factor TFIID [Methanoplanus
limicola DSM 2279]
gi|373906699|gb|EHQ34803.1| TATA binding protein of transcription factor TFIID [Methanoplanus
limicola DSM 2279]
Length = 186
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 93/164 (56%), Gaps = 2/164 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + V LDL IN ++ +EYN +F G+++++ +P+ L F SGK+++
Sbjct: 9 LKIENIVASAKVADELDLQMINEEIKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVLT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK + + L+ L I +K+ NIV + D+ P+ L+ + +
Sbjct: 69 GAKSIDNLSRGLEILGEKLRALKLDIPTNLEYKVQNIVTSADLGSPINLNKIAVGFNLDR 128
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
YEPE FPGL+YR+ +P+VV+L+F +G+++ITG K + A
Sbjct: 129 IEYEPEQFPGLVYRLEEPKVVVLLFGSGKLIITGGKETKDAKAA 172
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G P++LN+I EY P +F GL+ ++ P+ L F SGKL+I G
Sbjct: 103 QNIVTSADLGSPINLNKIAVGFNLDRIEYEPEQFPGLVYRLEEPKVVVLLFGSGKLIITG 162
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D K A K L LG
Sbjct: 163 GKETKDAKAAVIKIMSDLSNLG 184
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
KI NIV + V + L ++ + + Y + FPG++ RM P++ L+F +G++V+
Sbjct: 9 LKIENIVASAKVADELDLQMINE-EIKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVL 67
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS L + + L++ K
Sbjct: 68 TGAKSIDNLSRGLEILGEKLRALK 91
>gi|14521176|ref|NP_126651.1| transcription factor [Pyrococcus abyssi GE5]
gi|13124586|sp|Q9V024.1|TBP_PYRAB RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|5458394|emb|CAB49882.1| TATA box binding protein TFIIB-BBRE complex, chain A [Pyrococcus
abyssi GE5]
gi|380741746|tpe|CCE70380.1| TPA: transcription factor [Pyrococcus abyssi GE5]
Length = 191
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++
Sbjct: 9 LRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGF-KIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK HD + A K + LK +G K I N+V + D+ LD +
Sbjct: 69 GAKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN-C 127
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
YEPE FPG+IYR+ PR V+L+F +G+IV +GAKS ++ EA
Sbjct: 128 EYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEA 170
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV + +G +L+ + + EY P +F G+I ++ +PR L F SGK++
Sbjct: 100 IDIQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCS 159
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK E D A RK + L++ G
Sbjct: 160 GAKSEADAWEAVRKLLRELEKYG 182
>gi|383318805|ref|YP_005379646.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanocella conradii HZ254]
gi|379320175|gb|AFC99127.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanocella conradii HZ254]
Length = 188
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 98/175 (56%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + ++G +DL + + ++Y+P +F GL+ + +P+T L F+SGK++
Sbjct: 11 ITIENVVASTAIGQEIDLKSVTLALEGADYDPEQFPGLVYRTKDPKTAALIFRSGKIVCT 70
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D +K K + +G + + NIV + D+ + L+A+ + +
Sbjct: 71 GAKSIEDVDRGLKKVFKKIASVGIKVDPNPEITVQNIVASADLGSVLNLNAIAIGLGLEN 130
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P+VV+L+F +G++V+TG K + EA + I L+
Sbjct: 131 IEYEPEQFPGLVYRLDSPKVVVLLFGSGKLVVTGGKKPKDAEEAVERIVKELEGL 185
>gi|195964298|gb|ACG60160.1| TATA binding protein [Chaenocephalus aceratus]
Length = 173
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 67/96 (69%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 76 QLQNIVPTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 135
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIV 97
AK E +LA+RK+A+++++LG P K+ FKI N+V
Sbjct: 136 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMV 171
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 92 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
++ NIV T ++ + L + + ++ + Y P+ F +I R+ +PR LIF +G++V T
Sbjct: 76 QLQNIVPTVNLGCKLDLKTIA-LRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 134
Query: 152 GAKSRSE 158
GAKS +
Sbjct: 135 GAKSEEQ 141
>gi|55377538|ref|YP_135388.1| transcription factor [Haloarcula marismortui ATCC 43049]
gi|344211616|ref|YP_004795936.1| transcription factor/TATA-box binding family protein [Haloarcula
hispanica ATCC 33960]
gi|448630604|ref|ZP_21673184.1| transcription factor [Haloarcula vallismortis ATCC 29715]
gi|448639975|ref|ZP_21677123.1| transcription factor [Haloarcula sinaiiensis ATCC 33800]
gi|448659470|ref|ZP_21683325.1| transcription factor [Haloarcula californiae ATCC 33799]
gi|448666852|ref|ZP_21685497.1| transcription factor [Haloarcula amylolytica JCM 13557]
gi|448678006|ref|ZP_21689196.1| transcription factor [Haloarcula argentinensis DSM 12282]
gi|448688547|ref|ZP_21694349.1| transcription factor [Haloarcula japonica DSM 6131]
gi|74571974|sp|Q5V470.1|TBP_HALMA RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|55230263|gb|AAV45682.1| TATA-box binding protein E [Haloarcula marismortui ATCC 43049]
gi|343782971|gb|AEM56948.1| transcription factor / TATA-box binding family protein [Haloarcula
hispanica ATCC 33960]
gi|445755637|gb|EMA07020.1| transcription factor [Haloarcula vallismortis ATCC 29715]
gi|445760411|gb|EMA11674.1| transcription factor [Haloarcula californiae ATCC 33799]
gi|445762502|gb|EMA13723.1| transcription factor [Haloarcula sinaiiensis ATCC 33800]
gi|445771983|gb|EMA23039.1| transcription factor [Haloarcula amylolytica JCM 13557]
gi|445773681|gb|EMA24714.1| transcription factor [Haloarcula argentinensis DSM 12282]
gi|445779213|gb|EMA30150.1| transcription factor [Haloarcula japonica DSM 6131]
Length = 186
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++
Sbjct: 8 IDIENVVASTGIGQELDLESVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + R L+ L + + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHQSLRIVFDKLRDLNIQVDDDPEIVVQNIVSSADLGSSLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P VV L+F +G++V+TG K + + EA D I L
Sbjct: 128 IEYEPEQFPGLVYRLDEPDVVALLFGSGKLVVTGGKRKEDAEEAVDTIVERLSDL 182
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ I N+V + + + L+++ + + + Y+PE FPGL+YR P+ LIF +G+I
Sbjct: 6 ESIDIENVVASTGIGQELDLESVA-MDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKI 64
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFKKQ 176
V TGAKS ++H++ ++ L+ Q
Sbjct: 65 VCTGAKSTDDVHQSLRIVFDKLRDLNIQ 92
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGKL++ G
Sbjct: 102 QNIVSSADLGSSLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPDVVALLFGSGKLVVTG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K + D + A + L LG
Sbjct: 162 GKRKEDAEEAVDTIVERLSDLG 183
>gi|291191925|gb|ADD83026.1| TATA box binding protein [Gobiocypris rarus]
Length = 224
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 67/96 (69%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 128 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 187
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIV 97
AK E +LA+RK+A+++++LG P K+ FKI N+V
Sbjct: 188 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMV 223
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 92 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
++ NIV T ++ + L + + ++ + Y P+ F +I R+ +PR LIF +G++V T
Sbjct: 128 QLQNIVSTVNLGCKLDLKTIA-LRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 186
Query: 152 GAKSRSE 158
GAKS +
Sbjct: 187 GAKSEEQ 193
>gi|397780477|ref|YP_006544950.1| TATA-box-binding protein [Methanoculleus bourgensis MS2]
gi|396938979|emb|CCJ36234.1| TATA-box-binding protein AltName: Full=TATA-box factor
[Methanoculleus bourgensis MS2]
Length = 237
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 97/175 (55%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + V LDLN + S+++ +EYN +F G+++++ +P+ L F SGK+++
Sbjct: 60 LKIENIVASAKVTDSLDLNSLASQLKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVLT 119
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK + + L+ L I +K+ NIV + D+ P+ L+ + +
Sbjct: 120 GAKSIDNLSRGLQILGDQLRALNIDIPENLTYKVQNIVTSADLGTPINLNKIAVGFNLDK 179
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P+VV+L+F +G+++ITG K + A I L S
Sbjct: 180 IEYEPEQFPGLVYRLDDPKVVVLLFGSGKLIITGGKQPEDARRAVQRILSELSSL 234
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G P++LN+I EY P +F GL+ ++ +P+ L F SGKL+I G
Sbjct: 154 QNIVTSADLGTPINLNKIAVGFNLDKIEYEPEQFPGLVYRLDDPKVVVLLFGSGKLIITG 213
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D + A ++ L LG
Sbjct: 214 GKQPEDARRAVQRILSELSSLG 235
>gi|340344679|ref|ZP_08667811.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339519820|gb|EGP93543.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 187
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 93/158 (58%), Gaps = 2/158 (1%)
Query: 16 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 75
+DLN I + +EYNP +F GL+ ++ NP+T L F++GK++ G K E A
Sbjct: 23 IDLNDITKKFPDTEYNPDQFPGLVFRLQNPKTATLIFRTGKMVCTGGKSEEMAIKAVNTV 82
Query: 76 AKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMV 134
+ L++ G +K + NIV + ++ V L+ + S YEPE FPGLI+RM+
Sbjct: 83 VQKLRKGGIKVKKDAEITVQNIVASINLGGKVHLEKAARTLPR-SMYEPEQFPGLIHRML 141
Query: 135 KPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
P+ V+LIF +G++V TGAK+ S++ + N++ +L+
Sbjct: 142 DPKTVILIFSSGKLVCTGAKNESDVFRSVHNLHALLEE 179
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V +I++G + L + + S Y P +F GLI ++L+P+T L F SGKL+ GAK
Sbjct: 102 QNIVASINLGGKVHLEKAARTLPRSMYEPEQFPGLIHRMLDPKTVILIFSSGKLVCTGAK 161
Query: 64 HEHDC 68
+E D
Sbjct: 162 NESDV 166
>gi|410916461|ref|XP_003971705.1| PREDICTED: TATA box-binding protein-like protein 1-like [Takifugu
rubripes]
Length = 185
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 95/171 (55%), Gaps = 2/171 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V T GC L+L+ I S+ + YN + + M++ PR T + SGK++ +GA
Sbjct: 15 NVVATFRTGCRLNLHTIGSKGKNVIYNTRRGK-VTMQLRKPRITASIWASGKVICIGASS 73
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
E + KL +R+ A+ L++LG +K+ FK+ N++ C + F + L + ++YEPE
Sbjct: 74 EDEAKLGARRIARCLQKLGFKVKFSAFKVVNVMAGCSMPFKISLIDFTKKNRPIATYEPE 133
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
L+P +Y M +P+ + +F G + I A S + A ++YP+L ++
Sbjct: 134 LYPAAMYTMRQPKATIKVFSTGSVTIL-APSVVNVAAAVQHVYPLLSECRR 183
>gi|432331260|ref|YP_007249403.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanoregula formicicum SMSP]
gi|432137969|gb|AGB02896.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanoregula formicicum SMSP]
Length = 186
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 98/175 (56%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + V LDL + SR++ +EYN +F G+++++ +P+ L F SGK+++
Sbjct: 9 LKIENIVASAKVTDYLDLPALASRIKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVLT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK +L++L I K +KI NIV + D+ + L+ + +
Sbjct: 69 GAKSIDSLSKGLNILGNLLRKLDIDIPKKLNYKIQNIVTSADLATAINLNKIAVGFNLDR 128
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P+VV+L+F +G+++ITG K + +A I L+S
Sbjct: 129 IEYEPEQFPGLVYRLDNPKVVVLLFGSGKLIITGGKEPEDAKKAVVKILSDLRSL 183
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + + ++LN+I EY P +F GL+ ++ NP+ L F SGKL+I G
Sbjct: 103 QNIVTSADLATAINLNKIAVGFNLDRIEYEPEQFPGLVYRLDNPKVVVLLFGSGKLIITG 162
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D K A K L+ LG
Sbjct: 163 GKEPEDAKKAVVKILSDLRSLG 184
>gi|386875594|ref|ZP_10117754.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
gi|386806582|gb|EIJ66041.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
Length = 186
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + V +DLN+I EY+P +F GL+ ++ P+T L F SGK++ G+K
Sbjct: 11 ENVVASADVMQKMDLNEITRTFPDVEYHPDQFPGLVFRLKTPKTATLIFTSGKMVCTGSK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGF-KIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E + A + + L++ G +K I NIV + ++ + L+ + S YE
Sbjct: 71 SEEMARKAVKTVVQKLRKGGIKVKKDAVVTIQNIVASINLGGKIHLEQAARTLPR-SMYE 129
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
PE FPGLI+RM+ P+ V+L+F +G++V TGAK +++ + +N++ +L+
Sbjct: 130 PEQFPGLIHRMLDPKTVILLFSSGKLVCTGAKHEPDVYRSVNNLHALLEE 179
>gi|13542225|ref|NP_111913.1| transcription factor [Thermoplasma volcanium GSS1]
gi|24638241|sp|Q978J5.1|TBP_THEVO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|14325659|dbj|BAB60562.1| TATA-binding protein [TBP] [Thermoplasma volcanium GSS1]
Length = 184
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 92/161 (57%), Gaps = 2/161 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + S+ LDL++I + SEY P +F GLI ++ +P+T L F+SGK+ GAK
Sbjct: 10 ENIVASTSLAEHLDLSRIALALDGSEYEPEQFPGLIYRLQDPKTAVLIFRSGKVNCTGAK 69
Query: 64 HEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKL-DALHHVHSQFSSY 121
+ D K + LK + + NIV D+ + L D + + Y
Sbjct: 70 NIEDVKRTIKIIIDKLKAANIEVYDDPDIIVQNIVAVYDLESELNLTDIAMSLGLENVEY 129
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
EPE FPGL+YR+ +PRVVLL+F +G++V TGAK SE+ +A
Sbjct: 130 EPEQFPGLVYRVEEPRVVLLLFGSGKVVCTGAKEESEIEQA 170
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 15/91 (16%)
Query: 89 QGFKIHNIVCTCDV-------RFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLL 141
+ I NIV + + R + LD S YEPE FPGLIYR+ P+ +L
Sbjct: 5 EKITIENIVASTSLAEHLDLSRIALALDG--------SEYEPEQFPGLIYRLQDPKTAVL 56
Query: 142 IFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
IF +G++ TGAK+ ++ I LK+
Sbjct: 57 IFRSGKVNCTGAKNIEDVKRTIKIIIDKLKA 87
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + L+L I + EY P +F GL+ ++ PR L F SGK++ G
Sbjct: 101 QNIVAVYDLESELNLTDIAMSLGLENVEYEPEQFPGLVYRVEEPRVVLLLFGSGKVVCTG 160
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
AK E + + A K K L+++G
Sbjct: 161 AKEESEIEQAVIKVKKELQKVG 182
>gi|18977667|ref|NP_579024.1| transcription factor [Pyrococcus furiosus DSM 3638]
gi|397651790|ref|YP_006492371.1| transcription factor [Pyrococcus furiosus COM1]
gi|48429154|sp|P62000.1|TBP_PYRFU RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|48429155|sp|P62001.1|TBP_PYRWO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|1942573|pdb|1PCZ|A Chain A, Structure Of Tata-Binding Protein
gi|1942574|pdb|1PCZ|B Chain B, Structure Of Tata-Binding Protein
gi|498649|gb|AAA73447.1| TATA-binding protein [Pyrococcus woesei]
gi|1245168|gb|AAA93368.1| TATA-box binding protein [Pyrococcus furiosus]
gi|18893395|gb|AAL81419.1| transcription initiation factor TFIID (TATA-box factor) chain a
(TATA sequence-binding protein) (tbp) [Pyrococcus
furiosus DSM 3638]
gi|393189381|gb|AFN04079.1| transcription factor [Pyrococcus furiosus COM1]
Length = 191
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 2/163 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++
Sbjct: 9 LRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK D + A K A+ LK +G K + N+V + D+ LD +
Sbjct: 69 GAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPN-C 127
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
YEPE FPG+IYR+ +P+ V+L+F +G+IV +GAKS ++ EA
Sbjct: 128 EYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEA 170
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I NIV + D+ + L+ + + S Y PE FPG+I + P+V LLIF +G++V+
Sbjct: 9 LRIENIVASVDLFAQLDLEKVLDLCPN-SKYNPEEFPGIICHLDDPKVALLIFSSGKLVV 67
Query: 151 TGAKSRSELHEAFDNIYPVLKSF 173
TGAKS ++ A + LKS
Sbjct: 68 TGAKSVQDIERAVAKLAQKLKSI 90
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV + +G +L+ + + EY P +F G+I ++ P++ L F SGK++
Sbjct: 100 IDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCS 159
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK E D A RK + L + G
Sbjct: 160 GAKSEADAWEAVRKLLRELDKYG 182
>gi|2392146|pdb|1AIS|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA-Box
Complex From Pyrococcus Woesei
Length = 182
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 2/163 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++
Sbjct: 9 LRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK D + A K A+ LK +G K + N+V + D+ LD +
Sbjct: 69 GAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPN-C 127
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
YEPE FPG+IYR+ +P+ V+L+F +G+IV +GAKS ++ EA
Sbjct: 128 EYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEA 170
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I NIV + D+ + L+ + + S Y PE FPG+I + P+V LLIF +G++V+
Sbjct: 9 LRIENIVASVDLFAQLDLEKVLDLCPN-SKYNPEEFPGIICHLDDPKVALLIFSSGKLVV 67
Query: 151 TGAKSRSELHEAFDNIYPVLKSF 173
TGAKS ++ A + LKS
Sbjct: 68 TGAKSVQDIERAVAKLAQKLKSI 90
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV + +G +L+ + + EY P +F G+I ++ P++ L F SGK++
Sbjct: 100 IDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCS 159
Query: 61 GAKHEHDCKLASRKFAKILKQ 81
GAK E D A RK + L +
Sbjct: 160 GAKSEADAWEAVRKLLRELDK 180
>gi|6573566|pdb|1D3U|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+TATA-
Box Complex From Pyrococcus Woesei
Length = 181
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 2/163 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++
Sbjct: 9 LRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK D + A K A+ LK +G K + N+V + D+ LD +
Sbjct: 69 GAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPN-C 127
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
YEPE FPG+IYR+ +P+ V+L+F +G+IV +GAKS ++ EA
Sbjct: 128 EYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEA 170
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I NIV + D+ + L+ + + S Y PE FPG+I + P+V LLIF +G++V+
Sbjct: 9 LRIENIVASVDLFAQLDLEKVLDLCPN-SKYNPEEFPGIICHLDDPKVALLIFSSGKLVV 67
Query: 151 TGAKSRSELHEAFDNIYPVLKSF 173
TGAKS ++ A + LKS
Sbjct: 68 TGAKSVQDIERAVAKLAQKLKSI 90
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV + +G +L+ + + EY P +F G+I ++ P++ L F SGK++
Sbjct: 100 IDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCS 159
Query: 61 GAKHEHDCKLASRKFAKILKQ 81
GAK E D A RK + L +
Sbjct: 160 GAKSEADAWEAVRKLLRELDK 180
>gi|410722027|ref|ZP_11361343.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanobacterium sp. Maddingley MBC34]
gi|410597924|gb|EKQ52528.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanobacterium sp. Maddingley MBC34]
Length = 181
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 94/156 (60%), Gaps = 2/156 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + ++G LDL Q+ + EYN +F GL+ KI P+T L F SGKL+
Sbjct: 6 IKVENIVTSATIGKDLDLPQVAPALEGVEYNLEQFPGLVYKIKEPKTAALIFGSGKLVCT 65
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK + K A ++ L I ++ K+ NIV + ++ + L+A+ + + +
Sbjct: 66 GAKSIENSKKAIHIAVDKMRTLDPEIPHEYEMKVQNIVASANLEKTLNLEAVA-LDLENT 124
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKS 155
YEPE FPGL+YR+ +P+VVLL+F +G++V TGAK+
Sbjct: 125 EYEPEQFPGLVYRLGEPKVVLLLFGSGKVVCTGAKT 160
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
M QN+V + ++ L+L + + +EY P +F GL+ ++ P+ L F SGK++
Sbjct: 97 MKVQNIVASANLEKTLNLEAVALDLENTEYEPEQFPGLVYRLGEPKVVLLLFGSGKVVCT 156
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GAK D +L K + L +L
Sbjct: 157 GAKTIADAQLGVEKTKERLSEL 178
>gi|448732580|ref|ZP_21714852.1| transcription factor [Halococcus salifodinae DSM 8989]
gi|445804522|gb|EMA54773.1| transcription factor [Halococcus salifodinae DSM 8989]
Length = 191
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 91/167 (54%), Gaps = 1/167 (0%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + +G +DL + + ++++PG+F GLI + + + TCL F+SG +
Sbjct: 14 LETQNVVASSGIGQEIDLESVAMDLTGADFDPGQFPGLIYRPDDAKATCLIFRSGAITCT 73
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFS 119
GA+ + + L +LG ++ + NIV D+ + L+A+ + +
Sbjct: 74 GAQSIEEVQETVHTAVGALVELGIDVEAPDVTVQNIVSGADLGETLNLNAIAIGLGLESV 133
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YR+ P VV L+F +G++VITGAK E A + I
Sbjct: 134 EYEPEQFPGLVYRLDDPDVVALLFGSGKMVITGAKIHDEAEAALEEI 180
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V +G L+LN I + EY P +F GL+ ++ +P L F SGK++I G
Sbjct: 107 QNIVSGADLGETLNLNAIAIGLGLESVEYEPEQFPGLVYRLDDPDVVALLFGSGKMVITG 166
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
AK + + A + + L LG
Sbjct: 167 AKIHDEAEAALEEIIRRLNDLG 188
>gi|448302509|ref|ZP_21492488.1| transcription factor [Natronorubrum tibetense GA33]
gi|445581175|gb|ELY35537.1| transcription factor [Natronorubrum tibetense GA33]
Length = 186
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 95/166 (57%), Gaps = 4/166 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + VG L+L+ + + +Y+P F GLI ++ +P+ T L F++GK++
Sbjct: 8 IEIQNVVASTGVGQELELDALGQDLDDVQYDPDHFPGLIYRLQDPKATVLLFRTGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLG--HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQ 117
GA H+ + A + L+ LG P + + NIV D+ + L+A+ + +
Sbjct: 68 GATSVHNVQTALQDVFDTLRSLGIEAPADRE-ITVQNIVSNADLDRQLNLNAIAIGLGLE 126
Query: 118 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAF 163
YEPE FPGL+YR+ +P V+L+F +G+++ITG K+R + ++
Sbjct: 127 NVEYEPEQFPGLLYRLDEPEAVVLLFTSGKLLITGVKTREAIEDSL 172
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I N+V + V ++LDAL Y+P+ FPGLIYR+ P+ +L+F G+IV
Sbjct: 8 IEIQNVVASTGVGQELELDALGQDLDDVQ-YDPDHFPGLIYRLQDPKATVLLFRTGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSF 173
TGA S + A +++ L+S
Sbjct: 67 TGATSVHNVQTALQDVFDTLRSL 89
>gi|393796304|ref|ZP_10379668.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Candidatus Nitrosoarchaeum limnia BG20]
Length = 186
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 97/171 (56%), Gaps = 2/171 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + ++ LDL I + EY+P +F G + ++ NP+T L F SGK++ GAK
Sbjct: 12 NVVASATIDQKLDLVDITKKFPDVEYHPEQFPGAVFRLKNPKTATLLFSSGKMVCTGAKS 71
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ + A K +LK+ IK + I NIV + ++ V L+ + S YEP
Sbjct: 72 QELAETAVAKVVSMLKKGKIKIKNEAEVTIQNIVSSINLGGRVNLEQAARTLPR-SMYEP 130
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
E FPGLI+RM+ P+ V+LIF +G++V GAK ++H + + I+ +L+ K
Sbjct: 131 EQFPGLIHRMLDPKTVILIFSSGKLVCVGAKLEKDVHRSVNQIHSLLEEKK 181
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V +I++G ++L Q + S Y P +F GLI ++L+P+T L F SGKL+ +GAK
Sbjct: 102 QNIVSSINLGGRVNLEQAARTLPRSMYEPEQFPGLIHRMLDPKTVILIFSSGKLVCVGAK 161
Query: 64 HEHDC 68
E D
Sbjct: 162 LEKDV 166
>gi|448417264|ref|ZP_21579282.1| transcription factor [Halosarcina pallida JCM 14848]
gi|445678487|gb|ELZ30980.1| transcription factor [Halosarcina pallida JCM 14848]
Length = 187
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 96/175 (54%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + + L+ L P++ + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHESLELVFEKLRALQIPVEDDPEITVQNIVTSADLGRDLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P VV L+F +G++VITG K S+ +A D I L
Sbjct: 128 IEYEPEQFPGLVYRLDSPDVVALLFGSGKLVITGGKQPSDAEKAVDEIVSRLSDL 182
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + + L ++ + + + Y+PE FPGL+YR +P+ LIF +G+IV
Sbjct: 8 INIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS ++HE+ + ++ L++ +
Sbjct: 67 TGAKSTDDVHESLELVFEKLRALQ 90
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ +P L F SGKL+I G
Sbjct: 102 QNIVTSADLGRDLNLNAIAIGLGLENIEYEPEQFPGLVYRLDSPDVVALLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D + A + L LG
Sbjct: 162 GKQPSDAEKAVDEIVSRLSDLG 183
>gi|448414415|ref|ZP_21577484.1| transcription factor [Halosarcina pallida JCM 14848]
gi|445681981|gb|ELZ34405.1| transcription factor [Halosarcina pallida JCM 14848]
Length = 186
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 2/164 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + +G LDL + + +++NP F GL+ + +P+ L F+SGK++
Sbjct: 8 IEIQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D A L+ L P+ + NIV + D+ + L+AL + +
Sbjct: 68 GAKSIDDVHEALGIIFDKLRGLSIPVDEDPEITVQNIVSSADLGHNLNLNALAIGLGLED 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
YEPE FPGL+YRM +P VV+L+F +G+IVITG K + A
Sbjct: 128 VEYEPEQFPGLVYRMDEPEVVILLFGSGKIVITGGKQTDDAETA 171
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I N+V + + + L+AL + + P+ FPGL+YR P+ LIF +G+IV
Sbjct: 8 IEIQNVVASTGIGQELDLEALAD-DLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS ++HEA I+ L+
Sbjct: 67 TGAKSIDDVHEALGIIFDKLRGLS 90
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQ--INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGK++
Sbjct: 99 ITVQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLVYRMDEPEVVILLFGSGKIV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G K D + A + K + LG
Sbjct: 159 ITGGKQTDDAETAVVEIVKRIDNLG 183
>gi|448316921|ref|ZP_21506499.1| transcription factor [Natronococcus jeotgali DSM 18795]
gi|445606151|gb|ELY60056.1| transcription factor [Natronococcus jeotgali DSM 18795]
Length = 186
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 92/163 (56%), Gaps = 4/163 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + G DL + + ++Y+P F G++ ++ NP++ L F +GK++
Sbjct: 8 ITTENVVASGDTGREFDLQALADDLNNAQYDPNTFPGIVYRMDNPQSAGLIFHTGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFS 119
GAK D ++ LKQLG ++ F I NIV + D+ + L+A+ +
Sbjct: 68 GAKSVEDINKSAETIFNALKQLGIAVEENPFTIQNIVSSADLGCSLNLNAVAIGLGLGQI 127
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
YEPE FPGL+YR+ KP VV+L+F +G+ VITG +E+ +A
Sbjct: 128 EYEPEQFPGLVYRLDKPDVVVLLFGSGKAVITGG---TEIQDA 167
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +GC L+LN + + EY P +F GL+ ++ P L F SGK +I G
Sbjct: 101 QNIVSSADLGCSLNLNAVAIGLGLGQIEYEPEQFPGLVYRLDKPDVVVLLFGSGKAVITG 160
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
D A L+ +G
Sbjct: 161 GTEIQDAATAVNVIISKLENVG 182
>gi|16081349|ref|NP_393677.1| transcription factor [Thermoplasma acidophilum DSM 1728]
gi|14423941|sp|Q9HLM8.1|TBP_THEAC RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|10639343|emb|CAC11345.1| probable TATA-box binding protein (TFIID homolog) [Thermoplasma
acidophilum]
Length = 184
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 93/162 (57%), Gaps = 4/162 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + S+ LDL++I + SEY P +F GLI ++ P+T L F+SGK+ GAK
Sbjct: 10 ENIVASTSLAEHLDLSRIALALDGSEYEPEQFPGLIYRLQEPKTAVLIFRSGKVNCTGAK 69
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKI--HNIVCTCDVRFPVKL-DALHHVHSQFSS 120
+ D K + LK + Y +I NIV D+ + L D + +
Sbjct: 70 NIEDVKRTIKIIIDKLKAADIEV-YDDPQIIVQNIVAVYDLESELNLTDIAMSLGLENVE 128
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
YEPE FPGL+YR+ +PRVVLL+F +G++V TGAK SE+ +A
Sbjct: 129 YEPEQFPGLVYRVEEPRVVLLLFGSGKVVCTGAKEESEIEQA 170
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 15/91 (16%)
Query: 89 QGFKIHNIVCTCDV-------RFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLL 141
+ I NIV + + R + LD S YEPE FPGLIYR+ +P+ +L
Sbjct: 5 EKITIENIVASTSLAEHLDLSRIALALDG--------SEYEPEQFPGLIYRLQEPKTAVL 56
Query: 142 IFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
IF +G++ TGAK+ ++ I LK+
Sbjct: 57 IFRSGKVNCTGAKNIEDVKRTIKIIIDKLKA 87
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + L+L I + EY P +F GL+ ++ PR L F SGK++ G
Sbjct: 101 QNIVAVYDLESELNLTDIAMSLGLENVEYEPEQFPGLVYRVEEPRVVLLLFGSGKVVCTG 160
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
AK E + + A K K L+++G
Sbjct: 161 AKEESEIEQAVIKVKKELQKVG 182
>gi|389852335|ref|YP_006354569.1| transcription factor (TATA-box-binding protein) [Pyrococcus sp.
ST04]
gi|388249641|gb|AFK22494.1| transcription factor (TATA-box-binding protein) [Pyrococcus sp.
ST04]
Length = 191
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 95/165 (57%), Gaps = 6/165 (3%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++
Sbjct: 9 LRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ---GFKIHNIVCTCDVRFPVKLDALHHVHSQ 117
GAK D + A K + LK +G +K++ I N+V + D+ LD +
Sbjct: 69 GAKSVQDIERAVAKLVQKLKGIG--VKFRRAPQIDIQNMVFSGDIGREFNLDNVALTLPN 126
Query: 118 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
YEPE FPG+IYR+ +PR V+L+F +G+IV +GAKS ++ EA
Sbjct: 127 -CEYEPEQFPGVIYRVREPRAVILLFSSGKIVCSGAKSEADAWEA 170
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV + +G +L+ + + EY P +F G+I ++ PR L F SGK++
Sbjct: 100 IDIQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVREPRAVILLFSSGKIVCS 159
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK E D A RK + L++ G
Sbjct: 160 GAKSEADAWEAVRKLLRELEKYG 182
>gi|379994425|gb|AFD22839.1| TATA-box-binding protein, partial [Collodictyon triciliatum]
Length = 80
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 62/77 (80%)
Query: 87 KYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNG 146
++ FKI NIV +CDV FP++L+ L HVH + SYEPELFPGLIYRM +P++VLLIFV+G
Sbjct: 3 RFLDFKIQNIVGSCDVSFPIRLEGLAHVHHSYCSYEPELFPGLIYRMQEPKIVLLIFVSG 62
Query: 147 RIVITGAKSRSELHEAF 163
+IV+TGAK+R ++ F
Sbjct: 63 KIVLTGAKTRLDITRGF 79
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 4 QNMVGTISVGCPLDLNQI-NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + + Y Y P F GLI ++ P+ L F SGK+++ GA
Sbjct: 10 QNIVGSCDVSFPIRLEGLAHVHHSYCSYEPELFPGLIYRMQEPKIVLLIFVSGKIVLTGA 69
Query: 63 KHEHD 67
K D
Sbjct: 70 KTRLD 74
>gi|339237017|ref|XP_003380063.1| TATA-box-binding protein [Trichinella spiralis]
gi|316977178|gb|EFV60321.1| TATA-box-binding protein [Trichinella spiralis]
Length = 315
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 101/178 (56%), Gaps = 8/178 (4%)
Query: 1 MHYQNMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKL 57
+ +N+V +V C LDL+ I V Y Y LI +I PR + SGK+
Sbjct: 106 LRIRNVVTMFNVCCHLDLHHIAMHTCNVIYERYR----GVLIFQIKKPRCYVKMWSSGKI 161
Query: 58 LILGAKHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHS 116
+ GA+ E + + +SR A+I++++ P +++ +++ NI+ TC + F +++ L +
Sbjct: 162 TVSGAQSEEEARKSSRSVARIVQKIVGPRVRFADYRVTNIMATCKLPFGIRIPNLATEYP 221
Query: 117 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
+ SSYEPEL GL++R P+ L I G I ITGA+S++++ +++YP+L FK
Sbjct: 222 RESSYEPELSIGLVWRSASPKATLRIHSTGSITITGAESQADILTVMESLYPILVRFK 279
>gi|124485272|ref|YP_001029888.1| transcription factor [Methanocorpusculum labreanum Z]
gi|124362813|gb|ABN06621.1| TATA binding protein of transcription factor TFIID
[Methanocorpusculum labreanum Z]
Length = 189
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 100/179 (55%), Gaps = 8/179 (4%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + V LDL + +++ +EYN +F G+++++ NP+ L F SGK+++
Sbjct: 9 LKIENIVASTKVNDSLDLVALAAQIPGAEYNKQRFPGVVLRMQNPKIAALVFGSGKVVLT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK + +LK+L + + + + NIV + D+ + L + + F+
Sbjct: 69 GAKSLENLTKGLEYLVALLKELKINILDNPTYTVQNIVTSADLGSRINL---NKIAMSFN 125
Query: 120 ----SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
YEPE FPGL+YR+ P+VV+L+F +G+++ITG K ++ +A IY L S K
Sbjct: 126 LDKIEYEPEQFPGLVYRLDDPKVVVLLFGSGKLIITGGKKTADAKKAVKKIYDDLISLK 184
>gi|257386786|ref|YP_003176559.1| TATA-box binding family protein [Halomicrobium mukohataei DSM
12286]
gi|257169093|gb|ACV46852.1| TATA-box binding family protein [Halomicrobium mukohataei DSM
12286]
Length = 186
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + R L+ L + + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHQSLRIVFDKLRDLNIQVDDDPEIVVQNIVTSADLGRTLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P VV L+F +G++VITG K + EA D I L+
Sbjct: 128 IEYEPEQFPGLVYRLDDPDVVALLFGSGKLVITGGKEPDDAKEAVDKIVSRLEDL 182
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ I N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+I
Sbjct: 6 ETINIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKI 64
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFKKQ 176
V TGAKS ++H++ ++ L+ Q
Sbjct: 65 VCTGAKSTDDVHQSLRIVFDKLRDLNIQ 92
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ +P L F SGKL+I G
Sbjct: 102 QNIVTSADLGRTLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPDVVALLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D K A K L+ LG
Sbjct: 162 GKEPDDAKEAVDKIVSRLEDLG 183
>gi|307181017|gb|EFN68791.1| TATA box-binding protein-like protein 1 [Camponotus floridanus]
Length = 304
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 102/177 (57%), Gaps = 10/177 (5%)
Query: 4 QNMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLI 59
N+V + SV C L+L +I S V Y N G+I MK+ P TT + SGK+
Sbjct: 79 NNVVCSFSVRCHLNLREIALNGSNVEYRREN-----GMITMKLRRPYTTASIWSSGKVTC 133
Query: 60 LGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GA E K+A+R+FA+ L++LG +++ +++ N++ TC + F +K+ H + +
Sbjct: 134 TGATSEIQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITLFSVHHKENA 193
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YEPEL PG+ Y++ + + L IF G + +T A + + + A ++IYP++ F+K+
Sbjct: 194 DYEPELHPGVTYKLKELKATLKIFSTGSVTVT-APNVAAVQAAIEHIYPLVYEFRKE 249
>gi|14590849|ref|NP_142921.1| transcription factor [Pyrococcus horikoshii OT3]
gi|6647870|sp|O58737.1|TBP_PYRHO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|3257423|dbj|BAA30106.1| 191aa long hypothetical TATA-binding protein (transcription
initiation factor TFIID) [Pyrococcus horikoshii OT3]
Length = 191
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++
Sbjct: 9 LRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGF-KIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK D + A K + LK +G K + N+V + D+ LD +
Sbjct: 69 GAKSIQDIERAVAKLIQKLKGIGVKFKRAPLIDVQNMVFSGDIGREFNLDNVALTLPN-C 127
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
YEPE FPG+IYR+ +PR V+L+F +G+IV +GAKS ++ EA
Sbjct: 128 EYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAKSEADAWEA 170
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV + +G +L+ + + EY P +F G+I ++ PR L F SGK++
Sbjct: 100 IDVQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCS 159
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK E D A RK + L++ G
Sbjct: 160 GAKSEADAWEAVRKLLRELEKYG 182
>gi|307353232|ref|YP_003894283.1| TATA-box binding family protein [Methanoplanus petrolearius DSM
11571]
gi|307156465|gb|ADN35845.1| TATA-box binding family protein [Methanoplanus petrolearius DSM
11571]
Length = 184
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + + +DL I ++ E N KF G + +I NP+ L F SGK+++
Sbjct: 9 LKIENIVASGVIADSIDLEDIAEKIENCELNKKKFPGAVFRIENPKVAVLVFSSGKIVMT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDAL-HHVHSQF 118
G + E D KL K LK G I N+VC+ D + L+ + ++ +
Sbjct: 69 GIRREEDLKLGLDYLMKELKAAGVSTFDVPDVAITNMVCSYDTEKQINLNRIVVALNLEN 128
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P++V L+F +G++++TG ++ ++ D + L+S
Sbjct: 129 IEYEPEQFPGLVYRLDDPKIVALLFSSGKVILTGGRNLDDVRAGLDKLEKQLESI 183
>gi|91773461|ref|YP_566153.1| transcription factor [Methanococcoides burtonii DSM 6242]
gi|91712476|gb|ABE52403.1| TATA-box binding protein [Methanococcoides burtonii DSM 6242]
Length = 206
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 88/154 (57%), Gaps = 2/154 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + + DL +I + +EYN KF GL+ ++ +P+ L F SGK++ GAK
Sbjct: 32 ENVVASTKLAEEFDLIKIEAEFEGAEYNKQKFPGLVYRVTDPKAAFLVFTSGKVVCTGAK 91
Query: 64 HEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSSY 121
+ D + AK L +G I + NIV + D+ + L+A+ + + Y
Sbjct: 92 NVADVHIVIGNMAKKLNGIGIETIADPEITVQNIVASADLHATLNLNAIAIGLGLENIEY 151
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKS 155
EPE FPGL+YR+ P+VV+LIF +G++V+TG KS
Sbjct: 152 EPEQFPGLVYRIADPKVVVLIFSSGKLVVTGGKS 185
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 70 LASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF--SSYEPELFP 127
+AS + A+ K + KI N+V + + + D L + ++F + Y + FP
Sbjct: 12 VASTELAEESKNMSE----YNIKIENVVAST--KLAEEFD-LIKIEAEFEGAEYNKQKFP 64
Query: 128 GLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
GL+YR+ P+ L+F +G++V TGAK+ +++H N+
Sbjct: 65 GLVYRVTDPKAAFLVFTSGKVVCTGAKNVADVHIVIGNM 103
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + + L+LN I + EY P +F GL+ +I +P+ L F SGKL++ G
Sbjct: 123 QNIVASADLHATLNLNAIAIGLGLENIEYEPEQFPGLVYRIADPKVVVLIFSSGKLVVTG 182
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K C + L +G
Sbjct: 183 GKSPAHCDQGVEVVRQQLDNMG 204
>gi|410670721|ref|YP_006923092.1| TATA box binding protein [Methanolobus psychrophilus R15]
gi|409169849|gb|AFV23724.1| TATA box binding protein [Methanolobus psychrophilus R15]
Length = 183
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + + DL +I + +EYN KF GL+ ++ +P+ L F SGK++
Sbjct: 6 IKIENVVASTKLAEEFDLTKIEAEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCT 65
Query: 61 GAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK+ D AK L +G I+ + NIV + D++ + L+A+ + +
Sbjct: 66 GAKNVADVHTVIGNMAKKLNGIGIKTIEKPEITVQNIVASADLQAVLNLNAIAIGLGLEN 125
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P+VV+LIF +G++V+TG KS + + + L S
Sbjct: 126 IEYEPEQFPGLVYRIEDPKVVVLIFSSGKLVVTGGKSPENCEQGVEVVRQQLDSM 180
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + + L+LN I + EY P +F GL+ +I +P+ L F SGKL++ G
Sbjct: 100 QNIVASADLQAVLNLNAIAIGLGLENIEYEPEQFPGLVYRIEDPKVVVLIFSSGKLVVTG 159
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K +C+ + L +G
Sbjct: 160 GKSPENCEQGVEVVRQQLDSMG 181
>gi|432328919|ref|YP_007247063.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Aciduliprofundum sp. MAR08-339]
gi|432135628|gb|AGB04897.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Aciduliprofundum sp. MAR08-339]
Length = 181
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 99/181 (54%), Gaps = 16/181 (8%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + S+ LDL++I + +EY P +F GLI ++ P+T L F+SGK+
Sbjct: 4 VQIENIVASTSLADKLDLSKIALALDGAEYEPEQFPGLIYRLPEPKTAVLIFRSGKVNCT 63
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIH--------NIVCTCDVRFPVKL-DAL 111
GAK K K +K L +K G +++ NIV D+ + L D
Sbjct: 64 GAKD-------IEKVEKTIKILVDKLKAAGIEVYDNPKIVVQNIVAVYDLGVELNLTDIA 116
Query: 112 HHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLK 171
+ + YEPE FPGL+YR+ +P+VVLL+F +G++V TGAK + E+ EA + L+
Sbjct: 117 MSLGLENVEYEPEQFPGLVYRIEEPKVVLLLFGSGKVVCTGAKKKEEIVEAIKKLKKELE 176
Query: 172 S 172
S
Sbjct: 177 S 177
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V +G L+L I + EY P +F GL+ +I P+ L F SGK++ G
Sbjct: 98 QNIVAVYDLGVELNLTDIAMSLGLENVEYEPEQFPGLVYRIEEPKVVLLLFGSGKVVCTG 157
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
AK + + A +K K L+ +G
Sbjct: 158 AKKKEEIVEAIKKLKKELESVG 179
>gi|340503459|gb|EGR30047.1| tata-box binding protein, putative [Ichthyophthirius multifiliis]
Length = 184
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 98/169 (57%), Gaps = 9/169 (5%)
Query: 16 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 75
DL I + + ++YNP +F + M+I P+ T L + SG + I+G K + + A+ K
Sbjct: 10 FDLTTIGQKCKNTQYNPRRFPAVFMRIKEPKATGLIYASGNMTIVGTKSIEESQRAAEKM 69
Query: 76 AKILKQL-----GH-PIKYQGFKIHNIVCTCDVRFPVKLDALH--HVHSQFSSYEPELFP 127
K +K+ G + + ++ NIV +C + + + L++L+ + H++F++YE + FP
Sbjct: 70 LKDIKRALEIKEGECEFQEKKIQVRNIVASCKLGYKINLNSLNEDNEHNKFATYE-DTFP 128
Query: 128 GLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
GLIY+ +V LIF +G++V TGAKS ++ AF+ + + F+K+
Sbjct: 129 GLIYKKFNSNIVALIFASGKMVFTGAKSEQDIKNAFEQMGQAFQKFEKK 177
>gi|110669284|ref|YP_659095.1| transcription factor [Haloquadratum walsbyi DSM 16790]
gi|385804848|ref|YP_005841248.1| TATA-binding transcription initiation factor [Haloquadratum walsbyi
C23]
gi|109627031|emb|CAJ53507.1| TATA-binding transcription initiation factor [Haloquadratum walsbyi
DSM 16790]
gi|148508283|gb|ABQ76067.1| TATA-binding transcription initiation factor [uncultured
haloarchaeon]
gi|339730340|emb|CCC41669.1| TATA-binding transcription initiation factor [Haloquadratum walsbyi
C23]
Length = 186
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 94/175 (53%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQKPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + + L+ L P+ + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTTDVRESLHIVFDKLRDLRIPVSDNPDITVQNIVTSADLGEDLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P VV L+F +G++VITG K + EA D I L
Sbjct: 128 IEYEPEQFPGLVYRLDNPAVVALLFGSGKLVITGGKEPDDAREAVDVILSRLDEL 182
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + + L ++ + + + Y+PE FPGL+YR KP+ LIF +G+IV
Sbjct: 8 INIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQKPKSAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS +++ E+ ++ L+ +
Sbjct: 67 TGAKSTTDVRESLHIVFDKLRDLR 90
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ NP L F SGKL+
Sbjct: 99 ITVQNIVTSADLGEDLNLNAIAIGLGLENIEYEPEQFPGLVYRLDNPAVVALLFGSGKLV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G K D + A L +LG
Sbjct: 159 ITGGKEPDDAREAVDVILSRLDELG 183
>gi|119719211|ref|YP_919706.1| TATA-box binding [Thermofilum pendens Hrk 5]
gi|119524331|gb|ABL77703.1| TATA binding protein of transcription factor TFIID [Thermofilum
pendens Hrk 5]
Length = 142
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 2/135 (1%)
Query: 39 IMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIV 97
++++ P+T L F SGK++ GAK E + + A + K+LK G IK + ++ NIV
Sbjct: 1 MLRLTRPKTATLIFSSGKMVCTGAKSEAEVQKAVKSIIKLLKAHGIDIKNEPVIEVQNIV 60
Query: 98 CTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRS 157
+ +++ V L+ + S YEPE FPGLIYRM P+VVLLIF +G++V TGAK
Sbjct: 61 ASANLKASVDLERAAFLLEN-SMYEPEQFPGLIYRMQDPKVVLLIFSSGKVVCTGAKKEE 119
Query: 158 ELHEAFDNIYPVLKS 172
E+ A + IY +LK
Sbjct: 120 EVKRAVEKIYNILKE 134
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ +DL + + S Y P +F GLI ++ +P+ L F SGK++
Sbjct: 54 IEVQNIVASANLKASVDLERAAFLLENSMYEPEQFPGLIYRMQDPKVVLLIFSSGKVVCT 113
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK E + K A K ILK+ G
Sbjct: 114 GAKKEEEVKRAVEKIYNILKEQG 136
>gi|332159172|ref|YP_004424451.1| transcription factor [Pyrococcus sp. NA2]
gi|331034635|gb|AEC52447.1| transcription factor [Pyrococcus sp. NA2]
Length = 191
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++
Sbjct: 9 LRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGF-KIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK D + A K + LK +G K I N+V + D+ LD +
Sbjct: 69 GAKSIQDIEKAVAKLIQKLKGIGVKFKRAPLIDIQNMVFSGDLGREFNLDNVALTLPN-C 127
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
YEPE FPG+IYR+ PR V+L+F +G+IV +GAKS ++ EA
Sbjct: 128 EYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEA 170
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV + +G +L+ + + EY P +F G+I ++ +PR L F SGK++
Sbjct: 100 IDIQNMVFSGDLGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCS 159
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK E D A RK + L++ G
Sbjct: 160 GAKSEADAWEAVRKLLRELEKYG 182
>gi|383619863|ref|ZP_09946269.1| transcription factor [Halobiforma lacisalsi AJ5]
gi|435849205|ref|YP_007311455.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronococcus occultus SP4]
gi|448312598|ref|ZP_21502340.1| transcription factor [Natronolimnobius innermongolicus JCM 12255]
gi|448315726|ref|ZP_21505366.1| transcription factor [Natronococcus jeotgali DSM 18795]
gi|448401315|ref|ZP_21571551.1| transcription factor [Haloterrigena limicola JCM 13563]
gi|448696585|ref|ZP_21697997.1| transcription factor [Halobiforma lacisalsi AJ5]
gi|448708683|ref|ZP_21701101.1| transcription factor [Halobiforma nitratireducens JCM 10879]
gi|433675473|gb|AGB39665.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronococcus occultus SP4]
gi|445601049|gb|ELY55043.1| transcription factor [Natronolimnobius innermongolicus JCM 12255]
gi|445610861|gb|ELY64628.1| transcription factor [Natronococcus jeotgali DSM 18795]
gi|445666578|gb|ELZ19237.1| transcription factor [Haloterrigena limicola JCM 13563]
gi|445783213|gb|EMA34048.1| transcription factor [Halobiforma lacisalsi AJ5]
gi|445793090|gb|EMA43681.1| transcription factor [Halobiforma nitratireducens JCM 10879]
Length = 186
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 96/175 (54%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + R L++L + + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P VV L+F +G++VITG K + A D I L+
Sbjct: 128 IEYEPEQFPGLVYRLDEPEVVALLFGSGKLVITGGKKPEDAEHAVDKIVSRLEDL 182
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+IV
Sbjct: 8 INIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFKKQ 176
TGAKS ++HE+ ++ L+ + Q
Sbjct: 67 TGAKSTDDVHESLRIVFDKLRELQIQ 92
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGKL+I G
Sbjct: 102 QNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPEVVALLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D + A K L+ LG
Sbjct: 162 GKKPEDAEHAVDKIVSRLEDLG 183
>gi|336477906|ref|YP_004617047.1| TATA-box binding family protein [Methanosalsum zhilinae DSM 4017]
gi|335931287|gb|AEH61828.1| TATA-box binding family protein [Methanosalsum zhilinae DSM 4017]
Length = 183
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 89/154 (57%), Gaps = 2/154 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + + DL +I +EYN KF GL+ ++ +P+ L F SGK++ GAK
Sbjct: 9 ENVVASTKLAESFDLTKIEMEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCTGAK 68
Query: 64 HEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSSY 121
+ D + A+ L +G ++ + NIV + D+ + L+A+ + + Y
Sbjct: 69 NVEDVHTVIKNMARKLNSIGVETVEDPDITVQNIVASADLHAILNLNAIAIGLGLENIEY 128
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKS 155
EPE FPGL+YR+ +P+VV+LIF +G++V+TG KS
Sbjct: 129 EPEQFPGLVYRIDEPKVVVLIFSSGKLVVTGGKS 162
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
KI N+V + + L + + + + Y + FPGL+YR+ P+ L+F +G++V
Sbjct: 6 IKIENVVASTKLAESFDLTKIE-MEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVC 64
Query: 151 TGAKSRSELHEAFDNIYPVLKSF 173
TGAK+ ++H N+ L S
Sbjct: 65 TGAKNVEDVHTVIKNMARKLNSI 87
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + + L+LN I + EY P +F GL+ +I P+ L F SGKL++ G
Sbjct: 100 QNIVASADLHAILNLNAIAIGLGLENIEYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVTG 159
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K DC++ + L +G
Sbjct: 160 GKSPEDCEMGVEVVRQQLDSMG 181
>gi|408381757|ref|ZP_11179305.1| transcription factor [Methanobacterium formicicum DSM 3637]
gi|407815688|gb|EKF86258.1| transcription factor [Methanobacterium formicicum DSM 3637]
Length = 181
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 95/159 (59%), Gaps = 2/159 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + ++G +DL Q+ + EYN +F GL+ K+ P+T L F SGKL+
Sbjct: 6 IKVENIVASATLGKSVDLPQVAPALEGVEYNLEQFPGLVYKLKEPKTAALIFGSGKLVCT 65
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK + K A ++ L I ++ K+ NIV + ++ + L+A+ + + +
Sbjct: 66 GAKSIENSKKAIHIAVDKMRTLDPDIPHEFEIKVQNIVASANLDKTLNLEAVA-LDLENT 124
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSE 158
YEPE FPGL+YR+ P+VVLL+F +G++V TGAK+ S+
Sbjct: 125 EYEPEQFPGLVYRLGDPKVVLLLFGSGKVVCTGAKTISD 163
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ L+L + + +EY P +F GL+ ++ +P+ L F SGK++
Sbjct: 97 IKVQNIVASANLDKTLNLEAVALDLENTEYEPEQFPGLVYRLGDPKVVLLLFGSGKVVCT 156
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GAK D +L K + L +L
Sbjct: 157 GAKTISDAQLGVEKTKERLSEL 178
>gi|284163428|ref|YP_003401707.1| TATA-box binding family protein [Haloterrigena turkmenica DSM 5511]
gi|448307952|ref|ZP_21497838.1| transcription factor [Natronorubrum bangense JCM 10635]
gi|448320837|ref|ZP_21510322.1| transcription factor [Natronococcus amylolyticus DSM 10524]
gi|448330303|ref|ZP_21519586.1| transcription factor [Natrinema versiforme JCM 10478]
gi|448351218|ref|ZP_21540027.1| transcription factor [Natrialba taiwanensis DSM 12281]
gi|448364173|ref|ZP_21552767.1| transcription factor [Natrialba asiatica DSM 12278]
gi|448367160|ref|ZP_21555008.1| transcription factor [Natrialba aegyptia DSM 13077]
gi|448388559|ref|ZP_21565334.1| transcription factor [Haloterrigena salina JCM 13891]
gi|284013083|gb|ADB59034.1| TATA-box binding family protein [Haloterrigena turkmenica DSM 5511]
gi|445594922|gb|ELY49056.1| transcription factor [Natronorubrum bangense JCM 10635]
gi|445605264|gb|ELY59194.1| transcription factor [Natronococcus amylolyticus DSM 10524]
gi|445611982|gb|ELY65723.1| transcription factor [Natrinema versiforme JCM 10478]
gi|445634902|gb|ELY88076.1| transcription factor [Natrialba taiwanensis DSM 12281]
gi|445645061|gb|ELY98068.1| transcription factor [Natrialba asiatica DSM 12278]
gi|445653644|gb|ELZ06513.1| transcription factor [Natrialba aegyptia DSM 13077]
gi|445670314|gb|ELZ22917.1| transcription factor [Haloterrigena salina JCM 13891]
Length = 186
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 96/175 (54%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + R L++L + + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P VV L+F +G++VITG K + A D I L+
Sbjct: 128 IEYEPEQFPGLVYRLDEPEVVALLFGSGKLVITGGKKPKDAEHAVDKIVSRLEDL 182
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+IV
Sbjct: 8 INIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFKKQ 176
TGAKS ++HE+ ++ L+ + Q
Sbjct: 67 TGAKSTDDVHESLRIVFDKLRELQIQ 92
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGKL+I G
Sbjct: 102 QNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPEVVALLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D + A K L+ LG
Sbjct: 162 GKKPKDAEHAVDKIVSRLEDLG 183
>gi|340344813|ref|ZP_08667945.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339519954|gb|EGP93677.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 186
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 95/169 (56%), Gaps = 2/169 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + ++ LDL I + EY+P +F G + ++ NP+T L F SGK++ GAK
Sbjct: 12 NVVASATIDQKLDLVDITKKFPDVEYHPEQFPGAVFRLKNPKTATLLFSSGKMVCTGAKS 71
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ + A K +IL++ IK I NIV + ++ V L+ + S YEP
Sbjct: 72 QELAEDAVSKVVEILRKGKIKIKNDATVTIQNIVSSINLGGRVNLEQAARTLPR-SMYEP 130
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
E FPGLI+RM+ P+ V+LIF +G++V GAK ++H + I+ +L+
Sbjct: 131 EQFPGLIHRMLDPKTVILIFASGKLVCVGAKLEKDIHRSVHQIHSMLEE 179
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V +I++G ++L Q + S Y P +F GLI ++L+P+T L F SGKL+ +GAK
Sbjct: 102 QNIVSSINLGGRVNLEQAARTLPRSMYEPEQFPGLIHRMLDPKTVILIFASGKLVCVGAK 161
Query: 64 HEHD 67
E D
Sbjct: 162 LEKD 165
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSS--YEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + KLD L + +F Y PE FPG ++R+ P+ L+F +G++V
Sbjct: 10 IVNVVASATID--QKLD-LVDITKKFPDVEYHPEQFPGAVFRLKNPKTATLLFSSGKMVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS+ +A + +L+ K
Sbjct: 67 TGAKSQELAEDAVSKVVEILRKGK 90
>gi|448406902|ref|ZP_21573334.1| transcription factor [Halosimplex carlsbadense 2-9-1]
gi|445676708|gb|ELZ29225.1| transcription factor [Halosimplex carlsbadense 2-9-1]
Length = 186
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 94/175 (53%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + R L+ L + + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHESLRIVFDKLRDLNIQVDDDPEIVVQNIVTSADLGRNLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P VV L+F +G++VITG K + EA D I L+
Sbjct: 128 IEYEPEQFPGLVYRLDDPDVVALLFGSGKLVITGGKQPEDAEEAVDKIVSRLEDL 182
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ I N+V + + + L ++ + + + Y+PE FPGL+YR +P+ LIF +G+I
Sbjct: 6 ETINIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKI 64
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFKKQ 176
V TGAKS ++HE+ ++ L+ Q
Sbjct: 65 VCTGAKSTDDVHESLRIVFDKLRDLNIQ 92
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ +P L F SGKL+I G
Sbjct: 102 QNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPDVVALLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D + A K L+ LG
Sbjct: 162 GKQPEDAEEAVDKIVSRLEDLG 183
>gi|389861732|ref|YP_006363972.1| transcription factor [Thermogladius cellulolyticus 1633]
gi|388526636|gb|AFK51834.1| transcription factor [Thermogladius cellulolyticus 1633]
Length = 210
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 93/152 (61%), Gaps = 6/152 (3%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+ + +DL+ + S++ + P +F GLI ++ P+ T L F+SGK+++ G K
Sbjct: 29 ENIVATVILEHGIDLDLLESKIPNITFRPDQFPGLIFRLDKPKATALIFRSGKMVVTGTK 88
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
++ ++ +IL + H I+ G +I NIV + D+ V L+ ++ S
Sbjct: 89 STNELIEVVKRMIRILAR--HGIRITGKPRIQIQNIVASGDIHALVNLERAAYMLED-SM 145
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
YEPE FPGLI+RM +PRVVLLIF +G++VITG
Sbjct: 146 YEPEQFPGLIHRMREPRVVLLIFSSGKMVITG 177
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 92 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
+I NIV T + + LD L + + P+ FPGLI+R+ KP+ LIF +G++V+T
Sbjct: 27 RIENIVATVILEHGIDLDLLESKIPNIT-FRPDQFPGLIFRLDKPKATALIFRSGKMVVT 85
Query: 152 GAKSRSELHEAFDNIYPVL 170
G KS +EL E + +L
Sbjct: 86 GTKSTNELIEVVKRMIRIL 104
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + + ++L + + S Y P +F GLI ++ PR L F SGK++I
Sbjct: 117 IQIQNIVASGDIHALVNLERAAYMLEDSMYEPEQFPGLIHRMREPRVVLLIFSSGKMVIT 176
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK E + + A++K A+ L LG
Sbjct: 177 GAKEEKEVEEAAKKIAQELTDLG 199
>gi|407465173|ref|YP_006776055.1| 2-alkenal reductase [Candidatus Nitrosopumilus sp. AR2]
gi|407048361|gb|AFS83113.1| 2-alkenal reductase [Candidatus Nitrosopumilus sp. AR2]
Length = 186
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 96/169 (56%), Gaps = 2/169 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + ++ LDL I + EY+P +F G + ++ NP+T L F SGK++ GAK
Sbjct: 12 NVVASATIEQKLDLVDITKKFPAVEYHPEQFPGAVFRLKNPKTATLLFGSGKMVCTGAKS 71
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGF-KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ + A + KIL++ IK I NIV + ++ V L+ + S YEP
Sbjct: 72 QELAETAVFEVVKILRKGKIKIKNDPIVSIQNIVSSINLGGKVNLEQAARTLPR-SMYEP 130
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
E FPGLI+RM+ P+ V+LIF +G++V GAK ++H + + I+ +L+
Sbjct: 131 EQFPGLIHRMLDPKTVILIFASGKLVCVGAKLEKDVHRSVNQIHALLEE 179
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V +I++G ++L Q + S Y P +F GLI ++L+P+T L F SGKL+ +GAK
Sbjct: 102 QNIVSSINLGGKVNLEQAARTLPRSMYEPEQFPGLIHRMLDPKTVILIFASGKLVCVGAK 161
Query: 64 HEHDCKLASRKFAKILKQLG 83
E D + + +L++ G
Sbjct: 162 LEKDVHRSVNQIHALLEEKG 181
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 8/85 (9%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSS--YEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + KLD L + +F + Y PE FPG ++R+ P+ L+F +G++V
Sbjct: 10 IVNVVASATIE--QKLD-LVDITKKFPAVEYHPEQFPGAVFRLKNPKTATLLFGSGKMVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFKK 175
TGAKS+ EL E ++ V+K +K
Sbjct: 67 TGAKSQ-ELAET--AVFEVVKILRK 88
>gi|429191762|ref|YP_007177440.1| TATA-box binding protein [Natronobacterium gregoryi SP2]
gi|448325091|ref|ZP_21514490.1| transcription factor [Natronobacterium gregoryi SP2]
gi|429135980|gb|AFZ72991.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronobacterium gregoryi SP2]
gi|445616448|gb|ELY70074.1| transcription factor [Natronobacterium gregoryi SP2]
Length = 186
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + R L++L + + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P VV L+F +G++VITG K + A D I L+
Sbjct: 128 IEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITGGKKPEDAEHAVDKIVTRLEDL 182
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+IV
Sbjct: 8 INIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFKKQ 176
TGAKS ++HE+ ++ L+ + Q
Sbjct: 67 TGAKSTDDVHESLRIVFDKLRELQIQ 92
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ +P L F SGKL+I G
Sbjct: 102 QNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D + A K L+ LG
Sbjct: 162 GKKPEDAEHAVDKIVTRLEDLG 183
>gi|289581532|ref|YP_003479998.1| TATA-box binding family protein [Natrialba magadii ATCC 43099]
gi|336252658|ref|YP_004595765.1| TATA-box binding family protein [Halopiger xanaduensis SH-6]
gi|433589465|ref|YP_007278961.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|448283054|ref|ZP_21474333.1| transcription factor [Natrialba magadii ATCC 43099]
gi|448354487|ref|ZP_21543243.1| transcription factor [Natrialba hulunbeirensis JCM 10989]
gi|448357153|ref|ZP_21545859.1| transcription factor [Natrialba chahannaoensis JCM 10990]
gi|448381388|ref|ZP_21561591.1| transcription factor [Haloterrigena thermotolerans DSM 11522]
gi|289531085|gb|ADD05436.1| TATA-box binding family protein [Natrialba magadii ATCC 43099]
gi|335336647|gb|AEH35886.1| TATA-box binding family protein [Halopiger xanaduensis SH-6]
gi|433304245|gb|AGB30057.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|445574762|gb|ELY29250.1| transcription factor [Natrialba magadii ATCC 43099]
gi|445637375|gb|ELY90525.1| transcription factor [Natrialba hulunbeirensis JCM 10989]
gi|445649961|gb|ELZ02892.1| transcription factor [Natrialba chahannaoensis JCM 10990]
gi|445663196|gb|ELZ15950.1| transcription factor [Haloterrigena thermotolerans DSM 11522]
Length = 186
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + R L++L + + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P VV L+F +G++VITG K + A D I L+
Sbjct: 128 IEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITGGKKPEDAEHAVDKIVSRLEDL 182
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+IV
Sbjct: 8 INIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFKKQ 176
TGAKS ++HE+ ++ L+ + Q
Sbjct: 67 TGAKSTDDVHESLRIVFDKLRELQIQ 92
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ +P L F SGKL+I G
Sbjct: 102 QNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D + A K L+ LG
Sbjct: 162 GKKPEDAEHAVDKIVSRLEDLG 183
>gi|409096743|ref|ZP_11216767.1| transcription factor [Thermococcus zilligii AN1]
Length = 191
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 95/164 (57%), Gaps = 3/164 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V ++ + L+L ++ S+YNP +F G+I + +P+ L F SGKL++
Sbjct: 9 LRIENIVASVDLFAQLNLEKVIEICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVT 68
Query: 61 GAKHEHDCKLASRKFAKIL-KQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 118
GAK D K+ K ++L K++G K I N+V + D+ LDA+ +
Sbjct: 69 GAKSVDDIKMGVNKLIELLSKKVGTRFTKPPQIDIQNMVFSGDIGMEFNLDAVA-LSLPN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
YEPE FPG+IYR+ P+ V+L+F +G+IV +GAKS ++ EA
Sbjct: 128 CEYEPEQFPGVIYRVKDPKAVILLFSSGKIVCSGAKSENDAWEA 171
>gi|76801184|ref|YP_326192.1| transcription factor [Natronomonas pharaonis DSM 2160]
gi|121696850|sp|Q3ITB1.1|TBP_NATPD RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|76557049|emb|CAI48623.1| TATA-binding transcription initiation factor [Natronomonas
pharaonis DSM 2160]
Length = 187
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 94/175 (53%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + R L+ L + + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHESLRIVFDKLRDLEIQVDEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P VV L+F +G++VITG K + EA D I L+
Sbjct: 128 IEYEPEQFPGLVYRLDDPDVVALLFGSGKLVITGGKEPDDAREAVDKIVSRLEEL 182
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ I N+V + + + L ++ + + + Y+PE FPGL+YR +P+ LIF +G+I
Sbjct: 6 ETINIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKI 64
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFKKQ 176
V TGAKS ++HE+ ++ L+ + Q
Sbjct: 65 VCTGAKSTDDVHESLRIVFDKLRDLEIQ 92
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ +P L F SGKL+I G
Sbjct: 102 QNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPDVVALLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D + A K L++LG
Sbjct: 162 GKEPDDAREAVDKIVSRLEELG 183
>gi|374628350|ref|ZP_09700735.1| TATA binding protein of transcription factor TFIID [Methanoplanus
limicola DSM 2279]
gi|373906463|gb|EHQ34567.1| TATA binding protein of transcription factor TFIID [Methanoplanus
limicola DSM 2279]
Length = 184
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + + +DL I+ + E N +F G +++I P+ L F SGK+++
Sbjct: 9 LKIENIVASGEIAKEMDLQSISENIDNCELNTKRFPGAVLRITVPKIAALLFSSGKVVLT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
G ++ D + K LK+ G K+ NIVC+ D+ PV L+ + ++ +
Sbjct: 69 GIRNNEDLEKGLDIIIKSLKENGVDTFDVPNVKVTNIVCSYDMGKPVNLNRIVVTLNLEN 128
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P++V LIF +G+I++TG K+ ++ D + L S
Sbjct: 129 IEYEPEQFPGLVYRIEEPKIVALIFSSGKIILTGGKNMEDIKSGLDVLESKLDSI 183
>gi|322368133|ref|ZP_08042702.1| TATA-box binding family protein [Haladaptatus paucihalophilus
DX253]
gi|320552149|gb|EFW93794.1| TATA-box binding family protein [Haladaptatus paucihalophilus
DX253]
Length = 186
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 96/175 (54%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + L++L + + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTADVHESLEIVFDKLRELNIQVNDDPEIVVQNIVTSADLGRNLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P VV L+F +G++VITG K + +A D I L+
Sbjct: 128 IEYEPEQFPGLVYRLDEPEVVALLFGSGKLVITGGKKPEDAEQAVDKIVSRLEEL 182
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ I N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+I
Sbjct: 6 ETINIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKI 64
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFKKQ 176
V TGAKS +++HE+ + ++ L+ Q
Sbjct: 65 VCTGAKSTADVHESLEIVFDKLRELNIQ 92
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGKL+I G
Sbjct: 102 QNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPEVVALLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D + A K L++LG
Sbjct: 162 GKKPEDAEQAVDKIVSRLEELG 183
>gi|313124795|ref|YP_004035059.1| tata binding protein of transcription factor tfiid [Halogeometricum
borinquense DSM 11551]
gi|448286783|ref|ZP_21478002.1| transcription factor [Halogeometricum borinquense DSM 11551]
gi|312291160|gb|ADQ65620.1| TATA binding protein of transcription factor TFIID [Halogeometricum
borinquense DSM 11551]
gi|445573322|gb|ELY27844.1| transcription factor [Halogeometricum borinquense DSM 11551]
Length = 187
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 94/175 (53%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + L+ L P+ + + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHESLNLVFDKLRALQIPVDDEPDITVQNIVTSADLGRNLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P VV L+F +G++VITG K S+ A D I L
Sbjct: 128 IEYEPEQFPGLVYRLDSPDVVALLFGSGKLVITGGKHPSDAEGAVDEIVSRLSDL 182
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + + L ++ + + + Y+PE FPGL+YR +P+ LIF +G+IV
Sbjct: 8 INIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS ++HE+ + ++ L++ +
Sbjct: 67 TGAKSTDDVHESLNLVFDKLRALQ 90
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ +P L F SGKL+I G
Sbjct: 102 QNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDSPDVVALLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
KH D + A + L LG
Sbjct: 162 GKHPSDAEGAVDEIVSRLSDLG 183
>gi|15791061|ref|NP_280885.1| transcription factor [Halobacterium sp. NRC-1]
gi|169236811|ref|YP_001690011.1| transcription factor [Halobacterium salinarum R1]
gi|14423951|sp|Q9HN56.1|TBPE_HALSA RecName: Full=TATA-box-binding protein E; AltName: Full=Box
A-binding protein E; Short=BAP E; AltName: Full=TATA
sequence-binding protein E; Short=TBP E; AltName:
Full=TATA-box factor E
gi|10581658|gb|AAG20365.1| transcription initiation factor IID [Halobacterium sp. NRC-1]
gi|167727877|emb|CAP14665.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
Length = 186
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 96/175 (54%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + R L++L ++ + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHESLRIVFDKLRELSIKVEDDPEIVVQNIVTSADLGRQLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P VV L+F +G++VITG K + A D I L+
Sbjct: 128 IEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITGGKEPKDAEHAVDKITSRLEEL 182
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ +P L F SGKL+I G
Sbjct: 102 QNIVTSADLGRQLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D + A K L++LG
Sbjct: 162 GKEPKDAEHAVDKITSRLEELG 183
>gi|198450906|ref|XP_002137175.1| GA26713 [Drosophila pseudoobscura pseudoobscura]
gi|198131246|gb|EDY67733.1| GA26713 [Drosophila pseudoobscura pseudoobscura]
Length = 642
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 55/173 (31%), Positives = 96/173 (55%), Gaps = 3/173 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + +VGC LDL+ I R +Y+ K L MK+ P T L + SG++ G
Sbjct: 242 RNVVCSFNVGCQLDLSDIAQRGFNVKYH--KSRNLTMKLRRPAATALIWSSGRINCTGTT 299
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E K+A+R+FA+ L +LG P +Q F+I ++ TC + + + + H + + +P
Sbjct: 300 SEILAKVAARRFARCLWKLGFPTSFQNFRIETVLGTCRMPWDINIVNFSKKHPENAKQDP 359
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
E+ + Y+M P+ L IF G I + A+ + + A ++IYP+++ F+KQ
Sbjct: 360 EMHWCVTYKMQMPKATLKIFTTGSITVMAARV-NLVESAIEHIYPLVREFRKQ 411
>gi|448578919|ref|ZP_21644278.1| transcription factor [Haloferax larsenii JCM 13917]
gi|448589307|ref|ZP_21649466.1| transcription factor [Haloferax elongans ATCC BAA-1513]
gi|445724847|gb|ELZ76474.1| transcription factor [Haloferax larsenii JCM 13917]
gi|445735735|gb|ELZ87283.1| transcription factor [Haloferax elongans ATCC BAA-1513]
Length = 188
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + L++L P+ + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHESLGIVFDKLRELQIPVDDDPEITVQNIVTSADLGENLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P VV L+F +G++VITG K + A D I L
Sbjct: 128 IEYEPEQFPGLVYRLDEPSVVALLFGSGKLVITGGKKPEDAAAAVDVIISRLSDL 182
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+IV
Sbjct: 8 INIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS ++HE+ ++ L+ +
Sbjct: 67 TGAKSTDDVHESLGIVFDKLRELQ 90
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGKL+
Sbjct: 99 ITVQNIVTSADLGENLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPSVVALLFGSGKLV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G K D A L LG
Sbjct: 159 ITGGKKPEDAAAAVDVIISRLSDLG 183
>gi|448303994|ref|ZP_21493939.1| transcription factor [Natronorubrum sulfidifaciens JCM 14089]
gi|445592081|gb|ELY46273.1| transcription factor [Natronorubrum sulfidifaciens JCM 14089]
Length = 186
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + R L++L + + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P VV L+F +G++VITG K + A D I L+
Sbjct: 128 IEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITGGKKPKDAEHAVDKIVSRLEDL 182
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+IV
Sbjct: 8 INIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFKKQ 176
TGAKS ++HE+ ++ L+ + Q
Sbjct: 67 TGAKSTDDVHESLRIVFDKLRELQIQ 92
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ +P L F SGKL+I G
Sbjct: 102 QNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D + A K L+ LG
Sbjct: 162 GKKPKDAEHAVDKIVSRLEDLG 183
>gi|397772369|ref|YP_006539915.1| TATA-box binding family protein [Natrinema sp. J7-2]
gi|448342237|ref|ZP_21531189.1| transcription factor [Natrinema gari JCM 14663]
gi|448346767|ref|ZP_21535649.1| transcription factor [Natrinema altunense JCM 12890]
gi|397681462|gb|AFO55839.1| TATA-box binding family protein [Natrinema sp. J7-2]
gi|445626228|gb|ELY79577.1| transcription factor [Natrinema gari JCM 14663]
gi|445632029|gb|ELY85252.1| transcription factor [Natrinema altunense JCM 12890]
Length = 186
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 96/175 (54%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + R L++L + + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P VV L+F +G++VITG K + A D I L+
Sbjct: 128 IEYEPEQFPGLVYRLDEPEVVALLFGSGKLVITGGKKPVDAEHAVDKIVSRLEDL 182
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+IV
Sbjct: 8 INIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFKKQ 176
TGAKS ++HE+ ++ L+ + Q
Sbjct: 67 TGAKSTDDVHESLRIVFDKLRELQIQ 92
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGKL+I G
Sbjct: 102 QNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPEVVALLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D + A K L+ LG
Sbjct: 162 GKKPVDAEHAVDKIVSRLEDLG 183
>gi|389845649|ref|YP_006347888.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|448616732|ref|ZP_21665442.1| transcription factor [Haloferax mediterranei ATCC 33500]
gi|388242955|gb|AFK17901.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|445751387|gb|EMA02824.1| transcription factor [Haloferax mediterranei ATCC 33500]
Length = 189
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + L+ L P+ + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHESLEIVFDKLRDLQIPVDDDPEITVQNIVTSADLGENLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YR+ +P VV L+F +G++VITG K + A D I
Sbjct: 128 IEYEPEQFPGLVYRLDEPSVVALLFGSGKLVITGGKKPQDAAAAVDVI 175
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+IV
Sbjct: 8 INIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS ++HE+ + ++ L+ +
Sbjct: 67 TGAKSTDDVHESLEIVFDKLRDLQ 90
>gi|448466589|ref|ZP_21599175.1| transcription factor [Halorubrum kocurii JCM 14978]
gi|445813850|gb|EMA63824.1| transcription factor [Halorubrum kocurii JCM 14978]
Length = 186
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + +G LDL + + +++NP F GL+ + P+ L F+SGK++
Sbjct: 8 IEIQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D A + L+ L P++ + NIV + D+ + L+AL + +
Sbjct: 68 GAKSIDDVHEALGIIFEKLRGLQIPVEDDPDITVQNIVSSADLGHNLNLNALAIGLGLED 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSE 158
YEPE FPGL+YRM +P VV+L+F +G+IVITG K +
Sbjct: 128 VEYEPEQFPGLVYRMDEPEVVILLFGSGKIVITGGKRTDD 167
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I N+V + + + L+AL + + P+ FPGL+YR +P+ LIF +G+IV
Sbjct: 8 IEIQNVVASTGIGQELDLEALAE-DLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS ++HEA I+ L+ +
Sbjct: 67 TGAKSIDDVHEALGIIFEKLRGLQ 90
>gi|386874579|ref|ZP_10116817.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
gi|386807612|gb|EIJ66993.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
Length = 186
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 98/168 (58%), Gaps = 2/168 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + ++ LDL I + EY+P +F G + ++ +P+T L F SGK++ GAK
Sbjct: 12 NVVASATINQRLDLVDITKKFPAVEYHPEQFPGAVFRLKSPKTATLLFGSGKMVCTGAKS 71
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGF-KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ + A +K ++L++ IK + I NIV + ++ V L+ + S YEP
Sbjct: 72 QELAETAVKKVVELLRKGKVKIKSEPIVTIQNIVSSINLGGKVSLEQAARTLPR-SMYEP 130
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLK 171
E FPGLI+RM+ P+ V+LIF +G++V GAK ++H + + I+ +L+
Sbjct: 131 EQFPGLIHRMLDPKTVILIFSSGKLVCVGAKLEKDVHRSVNQIHSLLE 178
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V +I++G + L Q + S Y P +F GLI ++L+P+T L F SGKL+ +GAK
Sbjct: 102 QNIVSSINLGGKVSLEQAARTLPRSMYEPEQFPGLIHRMLDPKTVILIFSSGKLVCVGAK 161
Query: 64 HEHDC 68
E D
Sbjct: 162 LEKDV 166
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSS--YEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + +LD L + +F + Y PE FPG ++R+ P+ L+F +G++V
Sbjct: 10 IVNVVASATINQ--RLD-LVDITKKFPAVEYHPEQFPGAVFRLKSPKTATLLFGSGKMVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS+ A + +L+ K
Sbjct: 67 TGAKSQELAETAVKKVVELLRKGK 90
>gi|292654337|ref|YP_003534234.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|433428869|ref|ZP_20407252.1| transcription factor [Haloferax sp. BAB2207]
gi|448293881|ref|ZP_21483984.1| transcription factor [Haloferax volcanii DS2]
gi|448543937|ref|ZP_21625398.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|448551097|ref|ZP_21629239.1| transcription factor [Haloferax sp. ATCC BAA-645]
gi|448558528|ref|ZP_21633085.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|448573579|ref|ZP_21641062.1| transcription factor [Haloferax lucentense DSM 14919]
gi|448597726|ref|ZP_21654651.1| transcription factor [Haloferax alexandrinus JCM 10717]
gi|302595869|sp|D4GZA2.1|TBP1_HALVD RecName: Full=TATA-box-binding protein 1; AltName: Full=Box
A-binding protein 1; Short=BAP 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP 1; AltName:
Full=TATA-box factor 1
gi|291371886|gb|ADE04113.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|432195411|gb|ELK51946.1| transcription factor [Haloferax sp. BAB2207]
gi|445569802|gb|ELY24373.1| transcription factor [Haloferax volcanii DS2]
gi|445706079|gb|ELZ57966.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|445710653|gb|ELZ62451.1| transcription factor [Haloferax sp. ATCC BAA-645]
gi|445712280|gb|ELZ64062.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|445718485|gb|ELZ70175.1| transcription factor [Haloferax lucentense DSM 14919]
gi|445739187|gb|ELZ90696.1| transcription factor [Haloferax alexandrinus JCM 10717]
Length = 189
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + L++L P+ + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHESLEIVFDKLRELQIPVDDDPEITVQNIVTSADLGENLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YR+ +P VV L+F +G++VITG K ++ A D I
Sbjct: 128 IEYEPEQFPGLVYRLDEPSVVALLFGSGKLVITGGKQPTDAEAAVDVI 175
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + + L ++ + + + Y+PE FPGL+YR +P+ LIF +G+IV
Sbjct: 8 INIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS ++HE+ + ++ L+ +
Sbjct: 67 TGAKSTDDVHESLEIVFDKLRELQ 90
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGKL+
Sbjct: 99 ITVQNIVTSADLGENLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPSVVALLFGSGKLV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G K D + A L +LG
Sbjct: 159 ITGGKQPTDAEAAVDVIISRLSELG 183
>gi|240102503|ref|YP_002958812.1| transcription factor [Thermococcus gammatolerans EJ3]
gi|239910057|gb|ACS32948.1| TATA box-binding protein, transcription initiation factor TFIID
(tbp) [Thermococcus gammatolerans EJ3]
Length = 192
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 3/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V ++ + L+L ++ S+YNP +F G+I + P+ L F SGKL++
Sbjct: 9 LRIENIVASVDLFAELNLEKVIEICPNSKYNPEEFPGIICRFDEPKVALLIFSSGKLVVT 68
Query: 61 GAKHEHDCKLASRKFAKILK-QLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 118
GAK D + A +K ++LK ++G K I N+V + D+ LDA+ +
Sbjct: 69 GAKSVEDIERAVKKLTEMLKTKVGTKFTKPPQIDIQNMVFSGDIGMEFNLDAV-ALSLPN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPG+IYR P+ V+L+F +G+IV +GAKS + EA + L+ +
Sbjct: 128 CEYEPEQFPGVIYRAKDPKAVILLFSSGKIVCSGAKSEKDAWEAVKKLLRELEKY 182
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV + +G +L+ + + EY P +F G+I + +P+ L F SGK++
Sbjct: 101 IDIQNMVFSGDIGMEFNLDAVALSLPNCEYEPEQFPGVIYRAKDPKAVILLFSSGKIVCS 160
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK E D A +K + L++ G
Sbjct: 161 GAKSEKDAWEAVKKLLRELEKYG 183
>gi|7960166|gb|AAF71245.1| TA-TA binding protein 1 [Gallus gallus]
gi|7960168|gb|AAF71246.1| TA-TA binding protein 1 [Gallus gallus]
Length = 210
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 64/94 (68%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T+++GC LDL I R R +EYNP +F +IM+I PRTT L F SGK++ G
Sbjct: 115 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 174
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHN 95
AK E +LA+RK+A+++++LG P K+ FKI
Sbjct: 175 AKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQT 208
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 92 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
++ NIV T ++ + L + + ++ + Y P+ F +I R+ +PR LIF +G++V T
Sbjct: 115 QLQNIVSTVNLGCKLDLKTIA-LRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 173
Query: 152 GAKSRSE 158
GAKS +
Sbjct: 174 GAKSEEQ 180
>gi|312069507|ref|XP_003137714.1| hypothetical protein LOAG_02128 [Loa loa]
gi|307767124|gb|EFO26358.1| hypothetical protein LOAG_02128 [Loa loa]
Length = 401
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 83/141 (58%), Gaps = 4/141 (2%)
Query: 38 LIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL-KQLGH---PIKYQGFKI 93
L+ + NP + SGK+ I+G + E DCK A+R A+++ K +G ++ + +++
Sbjct: 192 LLKQKRNPSCYVKIYSSGKIYIVGCRSESDCKRAARGVARMVQKSMGRMMDVVRIRNYRV 251
Query: 94 HNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGA 153
N++ TC + F VK++ L + S YEPEL GLI+R PR L I G I +TGA
Sbjct: 252 CNVLATCKMPFGVKIEELAQKYPDCSQYEPELSVGLIWRSTNPRATLRIHTTGSITVTGA 311
Query: 154 KSRSELHEAFDNIYPVLKSFK 174
S S++ +A + IYP++K F+
Sbjct: 312 ASESDVMKAIEVIYPIIKEFR 332
>gi|433637530|ref|YP_007283290.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Halovivax ruber XH-70]
gi|448375336|ref|ZP_21558902.1| transcription factor [Halovivax asiaticus JCM 14624]
gi|433289334|gb|AGB15157.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Halovivax ruber XH-70]
gi|445658890|gb|ELZ11703.1| transcription factor [Halovivax asiaticus JCM 14624]
Length = 186
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 96/175 (54%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + R L++L + + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P VV L+F +G++VITG K + A D I L+
Sbjct: 128 IEYEPEQFPGLVYRLDEPEVVALLFGSGKLVITGGKRPVDAEHAVDKIVSRLEDL 182
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+IV
Sbjct: 8 INIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFKKQ 176
TGAKS ++HE+ ++ L+ + Q
Sbjct: 67 TGAKSTDDVHESLRIVFDKLRELQIQ 92
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGKL+I G
Sbjct: 102 QNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPEVVALLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D + A K L+ LG
Sbjct: 162 GKRPVDAEHAVDKIVSRLEDLG 183
>gi|321468361|gb|EFX79346.1| hypothetical protein DAPPUDRAFT_304868 [Daphnia pulex]
Length = 297
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 98/175 (56%), Gaps = 5/175 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGA 62
N+V + SV L+L QI EY + +G++ M++ P TT + SGK+ GA
Sbjct: 73 NNVVCSFSVKSHLNLKQIAQSGYNVEYR--RENGMVTMRLRKPYTTASIWSSGKVTCTGA 130
Query: 63 KHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
E + K A+R+ + + +LG+P ++ +++ N++ TC + F +K+ H +SY
Sbjct: 131 TSEDEAKQAARRITRSVSKLGYPKLRLVNYRVVNVLGTCTMPFAIKITPFSAKHRDIASY 190
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPEL PG+ YR+ +P+ L IF G I +T A + A ++IYP++ F+K+
Sbjct: 191 EPELHPGVTYRLKEPKATLKIFSTGSITVT-APCVGNVQSAIEHIYPLVFEFRKE 244
>gi|390986539|gb|AFM35789.1| hypothetical protein, partial [Oryza eichingeri]
Length = 88
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 65/88 (73%)
Query: 34 KFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKI 93
+F +IM+I P+TT L F SGK++ GAK E KLA+RK+A+I+++LG P K++ FKI
Sbjct: 1 RFAAVIMRIREPKTTALIFASGKMVCTGAKSEDHSKLAARKYARIVQKLGFPAKFKDFKI 60
Query: 94 HNIVCTCDVRFPVKLDALHHVHSQFSSY 121
NIV +CDV+FP++L+ L + H FSSY
Sbjct: 61 QNIVGSCDVKFPIRLEGLAYSHGAFSSY 88
>gi|354609688|ref|ZP_09027644.1| TATA-box-binding protein [Halobacterium sp. DL1]
gi|353194508|gb|EHB60010.1| TATA-box-binding protein [Halobacterium sp. DL1]
Length = 186
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 96/175 (54%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++
Sbjct: 8 INVENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + R L+ L ++ + + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHESLRIVFDKLRDLSIKVEDEPEIVVQNIVTSADLGRQLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P VV L+F +G++VITG K + A D I L+
Sbjct: 128 IEYEPEQFPGLVYRLDEPEVVALLFGSGKLVITGGKKPEDAEHAVDKIVSRLEEL 182
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGKL+I G
Sbjct: 102 QNIVTSADLGRQLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPEVVALLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D + A K L++LG
Sbjct: 162 GKKPEDAEHAVDKIVSRLEELG 183
>gi|448493598|ref|ZP_21609110.1| transcription factor [Halorubrum californiensis DSM 19288]
gi|445690153|gb|ELZ42373.1| transcription factor [Halorubrum californiensis DSM 19288]
Length = 186
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + +G LDL + + +++NP F GL+ + P+ L F+SGK++
Sbjct: 8 IEIQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D A + L+ L P++ + NIV + D+ + L+AL + +
Sbjct: 68 GAKSIDDVHDALGIIFEKLRGLQIPVEDDPEITVQNIVSSADLGHNLNLNALAIGLGLED 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSE 158
YEPE FPGL+YRM +P VV+L+F +G+IVITG K +
Sbjct: 128 VEYEPEQFPGLVYRMDEPEVVILLFGSGKIVITGGKQTDD 167
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I N+V + + + L+AL + + P+ FPGL+YR +P+ LIF +G+IV
Sbjct: 8 IEIQNVVASTGIGQELDLEALAE-DLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS ++H+A I+ L+ +
Sbjct: 67 TGAKSIDDVHDALGIIFEKLRGLQ 90
>gi|347963631|ref|XP_001687775.2| AGAP000336-PA [Anopheles gambiae str. PEST]
gi|333467108|gb|EDO64342.2| AGAP000336-PA [Anopheles gambiae str. PEST]
Length = 533
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 57/173 (32%), Positives = 102/173 (58%), Gaps = 4/173 (2%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 63
N+V + SV C L+L I E+ + +G++ MK+ P TT + SGK+ GA
Sbjct: 250 NVVCSFSVRCHLNLRDIALYGDNVEFR--RENGMVTMKLRRPYTTASIWSSGKITCTGAT 307
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E K+A+R++++ L++LG ++ + F+I N++ TC + + +K+ + + +SYEP
Sbjct: 308 SEDQAKVAARRYSRCLQKLGFNVRLRNFRIVNVLGTCAMPWGIKIVNFSEKYKKDASYEP 367
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EL PG+ Y++ PR L IF G I +T A S + + A ++I+P++ F+K+
Sbjct: 368 ELHPGVTYKLHSPRATLKIFSTGSITVTAA-SVAFVQAAIEHIFPLVYEFRKK 419
>gi|223478548|ref|YP_002582873.1| TATA-box binding protein [Thermococcus sp. AM4]
gi|214033774|gb|EEB74600.1| TATA-box binding protein [Thermococcus sp. AM4]
Length = 192
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 98/175 (56%), Gaps = 3/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V ++ + L+L ++ S+YNP +F G+I + +P+ L F SGKL++
Sbjct: 9 LRIENIVASVDLFAELNLEKVIEICPNSKYNPEEFPGIICRFEDPKVALLIFSSGKLVVT 68
Query: 61 GAKHEHDCKLASRKFAKILK-QLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF 118
GAK D + A +K ++LK ++G + I N+V + D+ LDA+ +
Sbjct: 69 GAKSVEDIERAVKKLTEMLKTKVGTKFTRPPQIDIQNMVFSGDIGMEFNLDAV-ALSLPN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPG+IYR P+ V+L+F +G+IV +GAKS + EA + L+ +
Sbjct: 128 CEYEPEQFPGVIYRAKDPKAVILLFSSGKIVCSGAKSEKDAWEAVKKLLRELEKY 182
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QNMV + +G +L+ + + EY P +F G+I + +P+ L F SGK++
Sbjct: 101 IDIQNMVFSGDIGMEFNLDAVALSLPNCEYEPEQFPGVIYRAKDPKAVILLFSSGKIVCS 160
Query: 61 GAKHEHDCKLASRKFAKILKQLG 83
GAK E D A +K + L++ G
Sbjct: 161 GAKSEKDAWEAVKKLLRELEKYG 183
>gi|448433649|ref|ZP_21585976.1| transcription factor [Halorubrum tebenquichense DSM 14210]
gi|445686241|gb|ELZ38577.1| transcription factor [Halorubrum tebenquichense DSM 14210]
Length = 186
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 94/179 (52%), Gaps = 11/179 (6%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++
Sbjct: 9 ITVENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTADPKSAALIFRSGKIVCT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA------LHHV 114
GA + + L+ L PI+ + NIV + D+ + L+A L H+
Sbjct: 69 GANSIEAVHGSLDIVFEELRALQIPIEDPEITVQNIVTSADLGESLNLNAIAIGLGLEHI 128
Query: 115 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P VV L+F +G++V+TG S ++ A D I L
Sbjct: 129 E-----YEPEQFPGLVYRLDEPEVVALLFGSGKVVVTGGTSPADAEAAVDVIVEELNGL 182
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ + N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+I
Sbjct: 7 ETITVENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTADPKSAALIFRSGKI 65
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFK 174
V TGA S +H + D ++ L++ +
Sbjct: 66 VCTGANSIEAVHGSLDIVFEELRALQ 91
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + + EY P +F GL+ ++ P L F SGK++
Sbjct: 99 ITVQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLVYRLDEPEVVALLFGSGKVV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
+ G D + A + L LG
Sbjct: 159 VTGGTSPADAEAAVDVIVEELNGLG 183
>gi|222479944|ref|YP_002566181.1| transcription factor [Halorubrum lacusprofundi ATCC 49239]
gi|222452846|gb|ACM57111.1| TATA-box binding family protein [Halorubrum lacusprofundi ATCC
49239]
Length = 186
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + +G LDL + + +++NP F GL+ + P+ L F+SGK++
Sbjct: 8 IEIQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D A + L+ L P++ + NIV + D+ + L+AL + +
Sbjct: 68 GAKSIDDVHEALGIIFEKLRGLQIPVEEDPEITVQNIVSSADLGHNLNLNALAIGLGLED 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSE 158
YEPE FPGL+YRM +P VV+L+F +G+IVITG K +
Sbjct: 128 VEYEPEQFPGLVYRMDEPEVVILLFGSGKIVITGGKRTDD 167
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I N+V + + + L+AL + + P+ FPGL+YR +P+ LIF +G+IV
Sbjct: 8 IEIQNVVASTGIGQELDLEALAE-DLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS ++HEA I+ L+ +
Sbjct: 67 TGAKSIDDVHEALGIIFEKLRGLQ 90
>gi|254167829|ref|ZP_04874678.1| Transcription factor TFIID (or TATA-binding protein, TBP)
[Aciduliprofundum boonei T469]
gi|254167914|ref|ZP_04874763.1| Transcription factor TFIID (or TATA-binding protein, TBP)
[Aciduliprofundum boonei T469]
gi|197623120|gb|EDY35686.1| Transcription factor TFIID (or TATA-binding protein, TBP)
[Aciduliprofundum boonei T469]
gi|197623205|gb|EDY35771.1| Transcription factor TFIID (or TATA-binding protein, TBP)
[Aciduliprofundum boonei T469]
Length = 185
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 93/166 (56%), Gaps = 4/166 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + S+ LDL++I + +EY P +F GLI ++ P+T L F+SGK+
Sbjct: 8 VQIENIVASTSLADKLDLSKIALALDGAEYEPEQFPGLIYRLPEPKTAVLIFRSGKVNCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKI--HNIVCTCDVRFPVKL-DALHHVHSQ 117
GAK + + LK G + Y KI NIV D+ + L D + +
Sbjct: 68 GAKDIERVEKTIKILVDKLKAAGIEV-YDNPKIVVQNIVAVYDLGVELNLTDIAMSLGLE 126
Query: 118 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAF 163
YEPE FPGL+YR+ +P+VVLL+F +G++V TGAK + E+ EA
Sbjct: 127 NVEYEPEQFPGLVYRIDEPKVVLLLFGSGKVVCTGAKKKEEIVEAI 172
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V +G L+L I + EY P +F GL+ +I P+ L F SGK++ G
Sbjct: 102 QNIVAVYDLGVELNLTDIAMSLGLENVEYEPEQFPGLVYRIDEPKVVLLLFGSGKVVCTG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
AK + + A +K K L+ +G
Sbjct: 162 AKKKEEIVEAIKKLKKELENVG 183
>gi|448335606|ref|ZP_21524747.1| transcription factor [Natrinema pellirubrum DSM 15624]
gi|445616584|gb|ELY70205.1| transcription factor [Natrinema pellirubrum DSM 15624]
Length = 186
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRSQNPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + R L++L + + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P VV L+F +G++VITG K + A D I L+
Sbjct: 128 IEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITGGKKPEDAEHAVDKIVSRLEDL 182
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+IV
Sbjct: 8 INIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRSQNPKSAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFKKQ 176
TGAKS ++HE+ ++ L+ + Q
Sbjct: 67 TGAKSTDDVHESLRIVFDKLRELQIQ 92
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ +P L F SGKL+I G
Sbjct: 102 QNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D + A K L+ LG
Sbjct: 162 GKKPEDAEHAVDKIVSRLEDLG 183
>gi|448302231|ref|ZP_21492214.1| transcription factor [Natronorubrum tibetense GA33]
gi|445581890|gb|ELY36238.1| transcription factor [Natronorubrum tibetense GA33]
Length = 186
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + R L++L + + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P VV L+F +G++VITG K + A D I L+
Sbjct: 128 IEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITGGKKPVDAEHAVDKIVSRLEDL 182
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+IV
Sbjct: 8 INIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFKKQ 176
TGAKS ++HE+ ++ L+ + Q
Sbjct: 67 TGAKSTDDVHESLRIVFDKLRELQIQ 92
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ +P L F SGKL+I G
Sbjct: 102 QNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D + A K L+ LG
Sbjct: 162 GKKPVDAEHAVDKIVSRLEDLG 183
>gi|409723661|ref|ZP_11270805.1| transcription factor [Halococcus hamelinensis 100A6]
gi|448722730|ref|ZP_21705261.1| transcription factor [Halococcus hamelinensis 100A6]
gi|445788867|gb|EMA39568.1| transcription factor [Halococcus hamelinensis 100A6]
Length = 189
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 95/170 (55%), Gaps = 6/170 (3%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++
Sbjct: 10 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCT 69
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALH-HVHS 116
GAK D + L+ L IK + + NIV + D++ + L+A+ +
Sbjct: 70 GAKSTADVHESLEIVFDKLRDL--EIKVEDAPEIVVQNIVTSADLQKTLNLNAIAIGLGL 127
Query: 117 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
+ YEPE FPGL+YR+ P VV L+F +G++VITG K ++ A D I
Sbjct: 128 ENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITGGKEPADAEHAVDKI 177
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ I N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+I
Sbjct: 8 ETINIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKI 66
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFK 174
V TGAKS +++HE+ + ++ L+ +
Sbjct: 67 VCTGAKSTADVHESLEIVFDKLRDLE 92
>gi|448428387|ref|ZP_21584257.1| transcription factor [Halorubrum terrestre JCM 10247]
gi|448429752|ref|ZP_21584617.1| transcription factor [Halorubrum tebenquichense DSM 14210]
gi|448439730|ref|ZP_21588142.1| transcription factor [Halorubrum saccharovorum DSM 1137]
gi|448453748|ref|ZP_21594091.1| transcription factor [Halorubrum litoreum JCM 13561]
gi|448454831|ref|ZP_21594311.1| transcription factor [Halorubrum lipolyticum DSM 21995]
gi|448474251|ref|ZP_21602110.1| transcription factor [Halorubrum aidingense JCM 13560]
gi|448485769|ref|ZP_21606914.1| transcription factor [Halorubrum arcis JCM 13916]
gi|448511919|ref|ZP_21616298.1| transcription factor [Halorubrum distributum JCM 9100]
gi|448519932|ref|ZP_21618139.1| transcription factor [Halorubrum distributum JCM 10118]
gi|448537266|ref|ZP_21622541.1| transcription factor [Halorubrum hochstenium ATCC 700873]
gi|445676556|gb|ELZ29076.1| transcription factor [Halorubrum terrestre JCM 10247]
gi|445689808|gb|ELZ42032.1| transcription factor [Halorubrum tebenquichense DSM 14210]
gi|445690882|gb|ELZ43085.1| transcription factor [Halorubrum saccharovorum DSM 1137]
gi|445694753|gb|ELZ46872.1| transcription factor [Halorubrum distributum JCM 9100]
gi|445702110|gb|ELZ54073.1| transcription factor [Halorubrum hochstenium ATCC 700873]
gi|445703496|gb|ELZ55426.1| transcription factor [Halorubrum distributum JCM 10118]
gi|445807548|gb|EMA57633.1| transcription factor [Halorubrum litoreum JCM 13561]
gi|445814514|gb|EMA64476.1| transcription factor [Halorubrum lipolyticum DSM 21995]
gi|445817468|gb|EMA67342.1| transcription factor [Halorubrum arcis JCM 13916]
gi|445817558|gb|EMA67427.1| transcription factor [Halorubrum aidingense JCM 13560]
Length = 186
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + +G LDL + + +++NP F GL+ + P+ L F+SGK++
Sbjct: 8 IEIQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D A + L+ L P++ + NIV + D+ + L+AL + +
Sbjct: 68 GAKSIDDVHEALGIIFEKLRGLQIPVEDDPEITVQNIVSSADLGHNLNLNALAIGLGLED 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSE 158
YEPE FPGL+YRM +P VV+L+F +G+IVITG K +
Sbjct: 128 VEYEPEQFPGLVYRMDEPEVVILLFGSGKIVITGGKRTDD 167
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I N+V + + + L+AL + + P+ FPGL+YR +P+ LIF +G+IV
Sbjct: 8 IEIQNVVASTGIGQELDLEALAE-DLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS ++HEA I+ L+ +
Sbjct: 67 TGAKSIDDVHEALGIIFEKLRGLQ 90
>gi|157136872|ref|XP_001663841.1| tata-box binding protein [Aedes aegypti]
gi|108869850|gb|EAT34075.1| AAEL013653-PA [Aedes aegypti]
Length = 584
Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats.
Identities = 55/173 (31%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 63
N+V + SV C L+L I + E+ + +G++ MK+ P TT + SGK+ GA
Sbjct: 293 NVVCSFSVRCHLNLRDIALKGFNVEFR--RENGMVTMKLRRPYTTASIWSSGKITCTGAT 350
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E K+A+R++++ L++LG ++++ F+I N++ TC + + + + + + +SYEP
Sbjct: 351 SEDQAKVAARRYSRCLQKLGFNVRFRNFRIVNVLGTCSMPWGIMIVNFSEKYKKDASYEP 410
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EL PG+ Y++ P+ L IF G I +T A S + + A ++I+P++ F+K+
Sbjct: 411 ELHPGVTYKLYNPKATLKIFSTGSITVTAA-SVAFVQAAIEHIFPLVYEFRKK 462
>gi|448536157|ref|ZP_21622402.1| transcription factor [Halorubrum hochstenium ATCC 700873]
gi|445702600|gb|ELZ54544.1| transcription factor [Halorubrum hochstenium ATCC 700873]
Length = 186
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 94/179 (52%), Gaps = 11/179 (6%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++
Sbjct: 9 ITVENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTADPKSAALIFRSGKIVCT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA------LHHV 114
GA + + L+ L PI+ + NIV + D+ + L+A L H+
Sbjct: 69 GANSIEAVHGSLDIVFEELRALQIPIEDPEITVQNIVTSADLGKSLNLNAIAIGLGLEHI 128
Query: 115 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P VV L+F +G++V+TG S ++ A D I L
Sbjct: 129 E-----YEPEQFPGLVYRLDEPEVVALLFGSGKVVVTGGTSPADAEAAVDVIVEELNGL 182
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ + N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+I
Sbjct: 7 ETITVENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTADPKSAALIFRSGKI 65
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFK 174
V TGA S +H + D ++ L++ +
Sbjct: 66 VCTGANSIEAVHGSLDIVFEELRALQ 91
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + + EY P +F GL+ ++ P L F SGK++
Sbjct: 99 ITVQNIVTSADLGKSLNLNAIAIGLGLEHIEYEPEQFPGLVYRLDEPEVVALLFGSGKVV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
+ G D + A + L LG
Sbjct: 159 VTGGTSPADAEAAVDVIVEELNGLG 183
>gi|73668140|ref|YP_304155.1| transcription factor [Methanosarcina barkeri str. Fusaro]
gi|72395302|gb|AAZ69575.1| TATA binding protein of transcription factor TFIID [Methanosarcina
barkeri str. Fusaro]
Length = 183
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + + DL I S+ +EYN KF GL+ ++ +P+ L F SGK++
Sbjct: 6 IKIENVVASTKLAEEFDLTVIESKFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCT 65
Query: 61 GAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK+ D AK L +G I+ + NIV + D+ + L+A+ + +
Sbjct: 66 GAKNVADVHTVIGNMAKKLNSIGITTIENPQITVQNIVASADLHTILNLNAIAIGLGLEN 125
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKS 155
YEPE FPGL+YR+ P+VV+LIF +G++V+TG K+
Sbjct: 126 IEYEPEQFPGLVYRIDDPKVVVLIFSSGKLVVTGGKT 162
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQF--SSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
KI N+V + + + D L + S+F + Y + FPGL+YR+ P+ L+F +G++
Sbjct: 6 IKIENVVAST--KLAEEFD-LTVIESKFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKV 62
Query: 149 VITGAKSRSELHEAFDNIYPVLKSF 173
V TGAK+ +++H N+ L S
Sbjct: 63 VCTGAKNVADVHTVIGNMAKKLNSI 87
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + + L+LN I + EY P +F GL+ +I +P+ L F SGKL+
Sbjct: 97 ITVQNIVASADLHTILNLNAIAIGLGLENIEYEPEQFPGLVYRIDDPKVVVLIFSSGKLV 156
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
+ G K DC+ + L +G
Sbjct: 157 VTGGKTPEDCERGVEVVRQQLDNMG 181
>gi|289596646|ref|YP_003483342.1| TATA-box binding family protein [Aciduliprofundum boonei T469]
gi|289534433|gb|ADD08780.1| TATA-box binding family protein [Aciduliprofundum boonei T469]
Length = 181
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 93/166 (56%), Gaps = 4/166 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + S+ LDL++I + +EY P +F GLI ++ P+T L F+SGK+
Sbjct: 4 VQIENIVASTSLADKLDLSKIALALDGAEYEPEQFPGLIYRLPEPKTAVLIFRSGKVNCT 63
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKI--HNIVCTCDVRFPVKL-DALHHVHSQ 117
GAK + + LK G + Y KI NIV D+ + L D + +
Sbjct: 64 GAKDIERVEKTIKILVDKLKAAGIEV-YDNPKIVVQNIVAVYDLGVELNLTDIAMSLGLE 122
Query: 118 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAF 163
YEPE FPGL+YR+ +P+VVLL+F +G++V TGAK + E+ EA
Sbjct: 123 NVEYEPEQFPGLVYRIDEPKVVLLLFGSGKVVCTGAKKKEEIVEAI 168
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V +G L+L I + EY P +F GL+ +I P+ L F SGK++ G
Sbjct: 98 QNIVAVYDLGVELNLTDIAMSLGLENVEYEPEQFPGLVYRIDEPKVVLLLFGSGKVVCTG 157
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
AK + + A +K K L+ +G
Sbjct: 158 AKKKEEIVEAIKKLKKELENVG 179
>gi|448582755|ref|ZP_21646259.1| transcription factor [Haloferax gibbonsii ATCC 33959]
gi|445732403|gb|ELZ83986.1| transcription factor [Haloferax gibbonsii ATCC 33959]
Length = 189
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + L++L P+ + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHESLEIVFDKLRELQIPVDDDPEITVQNIVTSADLGENLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YR+ +P VV L+F +G++VITG K + A D I
Sbjct: 128 IEYEPEQFPGLVYRLDEPSVVALLFGSGKLVITGGKKPEDAEAAVDVI 175
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + + L ++ + + + Y+PE FPGL+YR +P+ LIF +G+IV
Sbjct: 8 INIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS ++HE+ + ++ L+ +
Sbjct: 67 TGAKSTDDVHESLEIVFDKLRELQ 90
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGKL+
Sbjct: 99 ITVQNIVTSADLGENLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPSVVALLFGSGKLV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G K D + A L +LG
Sbjct: 159 ITGGKKPEDAEAAVDVIISRLSELG 183
>gi|154150459|ref|YP_001404077.1| transcription factor [Methanoregula boonei 6A8]
gi|153999011|gb|ABS55434.1| TATA-box binding [Methanoregula boonei 6A8]
Length = 186
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 96/175 (54%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + V LDL + S+++ +EYN +F G+++++ +P+ L F SGK+++
Sbjct: 9 LKIENIVASAKVTDYLDLPALASKIKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVLT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK L+ L I K +KI NIV + D+ + L+ + +
Sbjct: 69 GAKSVDSLSKGLTILGNQLRSLDIDIPKKLTYKIQNIVTSADLATAINLNKIAVGFNLDR 128
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P+VV+L+F +G+++ITG K + +A I L+S
Sbjct: 129 IEYEPEQFPGLVYRLENPKVVVLLFGSGKLIITGGKEPEDAKKAVVKILSDLRSL 183
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + + ++LN+I EY P +F GL+ ++ NP+ L F SGKL+I G
Sbjct: 103 QNIVTSADLATAINLNKIAVGFNLDRIEYEPEQFPGLVYRLENPKVVVLLFGSGKLIITG 162
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D K A K L+ LG
Sbjct: 163 GKEPEDAKKAVVKILSDLRSLG 184
>gi|20093119|ref|NP_619194.1| transcription factor [Methanosarcina acetivorans C2A]
gi|24638258|sp|Q8TI26.1|TBP1_METAC RecName: Full=TATA-box-binding protein 1; AltName: Full=Box
A-binding protein 1; Short=BAP 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP 1; AltName:
Full=TATA-box factor 1
gi|19918456|gb|AAM07674.1| TATA-binding protein [Methanosarcina acetivorans C2A]
Length = 183
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + + DL I S +EYN KF GL+ ++ +P+ L F SGK++
Sbjct: 6 IKIENVVASTKLAEEFDLTVIESEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCT 65
Query: 61 GAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK+ D AK L +G ++ + NIV + D+ + L+A+ + +
Sbjct: 66 GAKNVADVHTVIGNMAKKLNSIGIKTMENPQITVQNIVASADLHTILNLNAIAIGLGLEN 125
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKS 155
YEPE FPGL+YR+ +P+VV+LIF +G++V+TG KS
Sbjct: 126 IEYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVTGGKS 162
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQF--SSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
KI N+V + + + D L + S+F + Y + FPGL+YR+ P+ L+F +G++
Sbjct: 6 IKIENVVAST--KLAEEFD-LTVIESEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKV 62
Query: 149 VITGAKSRSELHEAFDNIYPVLKSF 173
V TGAK+ +++H N+ L S
Sbjct: 63 VCTGAKNVADVHTVIGNMAKKLNSI 87
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + + L+LN I + EY P +F GL+ +I P+ L F SGKL++ G
Sbjct: 100 QNIVASADLHTILNLNAIAIGLGLENIEYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVTG 159
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K DC+ + L +G
Sbjct: 160 GKSPEDCERGVEVVRQQLDNMG 181
>gi|448606630|ref|ZP_21659056.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|448622378|ref|ZP_21669072.1| transcription factor [Haloferax denitrificans ATCC 35960]
gi|445738838|gb|ELZ90350.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|445754460|gb|EMA05865.1| transcription factor [Haloferax denitrificans ATCC 35960]
Length = 189
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + L++L P+ + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHESLEIVFDKLRELQIPVDDDPEITVQNIVTSADLGENLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YR+ +P VV L+F +G++VITG K + A D I
Sbjct: 128 IEYEPEQFPGLVYRLDEPSVVALLFGSGKLVITGGKQPKDAEAAVDVI 175
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + + L ++ + + + Y+PE FPGL+YR +P+ LIF +G+IV
Sbjct: 8 INIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS ++HE+ + ++ L+ +
Sbjct: 67 TGAKSTDDVHESLEIVFDKLRELQ 90
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGKL+
Sbjct: 99 ITVQNIVTSADLGENLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPSVVALLFGSGKLV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G K D + A L +LG
Sbjct: 159 ITGGKQPKDAEAAVDVIISRLSELG 183
>gi|222481174|ref|YP_002567410.1| transcription factor [Halorubrum lacusprofundi ATCC 49239]
gi|222454550|gb|ACM58813.1| TATA-box binding family protein [Halorubrum lacusprofundi ATCC
49239]
Length = 181
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Query: 5 NMVGTISVGCPLDLNQINSRVR--YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
N+VG+ +G LDL + + Y EY+P +HGL +++ ++SGK +I G
Sbjct: 7 NIVGSGDLGVELDLEALEGDLSTPYLEYDPSNYHGLYVRLEEGGPLITVYRSGKYIISGC 66
Query: 63 KHEHDCKLASRKFAKILKQLGHPIKYQ--GFKIHNIVCTCDVRFPVKLDALH-HVHSQFS 119
E + + F + L +LG + Q GF + N+VCT + V L+AL + + +
Sbjct: 67 PSEEVLRKTNDGFLRALAELGITDEAQQTGFTVQNVVCTAMLNEMVSLNALSIGLGLEVT 126
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YR VLL+F NG++VITGAK A++++
Sbjct: 127 EYEPEQFPGLVYRPEGIGAVLLVFANGKLVITGAKDAETAEVAYNHL 173
Score = 36.6 bits (83), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 4 QNMVGTISVGCPLDLN--QINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T + + LN I + +EY P +F GL+ + L F +GKL+I G
Sbjct: 100 QNVVCTAMLNEMVSLNALSIGLGLEVTEYEPEQFPGLVYRPEGIGAVLLVFANGKLVITG 159
Query: 62 AKHEHDCKLASRKFAKILKQL 82
AK ++A +++L
Sbjct: 160 AKDAETAEVAYNHLQSKVQEL 180
>gi|195143693|ref|XP_002012832.1| GL23716 [Drosophila persimilis]
gi|194101775|gb|EDW23818.1| GL23716 [Drosophila persimilis]
Length = 640
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 56/173 (32%), Positives = 95/173 (54%), Gaps = 3/173 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + +VGC LDL+ I R +Y+ + L MK+ P T L + SG++ G
Sbjct: 242 RNVVCSFNVGCQLDLSDIAQRGFNVKYHRSR--NLTMKLRRPAATALIWSSGRINCTGTT 299
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E K+A+R+FA+ L +LG P ++Q F+I ++ TC + + + + H + + EP
Sbjct: 300 SEILAKVAARRFARCLWKLGFPTRFQNFRIETVLGTCRMPWDINIVNFSKKHPENAKQEP 359
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
E+ + Y+M P+ L IF G I + A S + + A +IYP ++ F+KQ
Sbjct: 360 EMHWCVTYKMQMPKATLKIFTTGSITVMAA-SVNLVESAIGHIYPPVREFRKQ 411
>gi|355572992|ref|ZP_09043960.1| TATA-box-binding protein [Methanolinea tarda NOBI-1]
gi|354824004|gb|EHF08263.1| TATA-box-binding protein [Methanolinea tarda NOBI-1]
Length = 186
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 96/175 (54%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + V LDL + S+++ +EYN +F G+++++ P+ L F SGK+++
Sbjct: 9 LKIENIVASAKVTDYLDLPALASQIKDAEYNKKRFPGVVIRMQQPKIAALVFGSGKVVLT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK +L+ L I K +KI NIV + D+ + L+ + +
Sbjct: 69 GAKSIESLSQGLEILGNLLRGLNIDIPKKLTYKIQNIVTSADLGSGINLNKIAVGFNLDR 128
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P+VV+L+F +G+++ITG K + +A I LK+
Sbjct: 129 IEYEPEQFPGLVYRLENPKVVVLLFGSGKLIITGGKEPEDARKAVQKILTDLKNL 183
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G ++LN+I EY P +F GL+ ++ NP+ L F SGKL+I G
Sbjct: 103 QNIVTSADLGSGINLNKIAVGFNLDRIEYEPEQFPGLVYRLENPKVVVLLFGSGKLIITG 162
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D + A +K LK LG
Sbjct: 163 GKEPEDARKAVQKILTDLKNLG 184
>gi|399578906|ref|ZP_10772650.1| hypothetical protein HSB1_46890 [Halogranum salarium B-1]
gi|399235932|gb|EJN56872.1| hypothetical protein HSB1_46890 [Halogranum salarium B-1]
Length = 189
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 95/164 (57%), Gaps = 2/164 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+H +N+V + +G ++L Q+ ++ ++YNP F G++ ++ +P+ L F+SGK++
Sbjct: 8 VHIENVVASTGIGTEIELEQLAMDLQGADYNPENFPGIVYRLQDPKAATLIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK A ++ L+ LG + + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSIEYVHAACQRVFDDLRTLGIDVDDDPEVIVQNIVASADLGDSLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
YEPE FPGL+YR+ P+VV L+F +G++VITG K+ S+ A
Sbjct: 128 IEYEPEQFPGLVYRIDDPKVVALLFGSGKLVITGGKTPSDAKRA 171
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
I N+V + + ++L+ L + Q + Y PE FPG++YR+ P+ LIF +G+IV TG
Sbjct: 10 IENVVASTGIGTEIELEQLA-MDLQGADYNPENFPGIVYRLQDPKAATLIFRSGKIVCTG 68
Query: 153 AKSRSELHEAFDNIYPVLKSF 173
AKS +H A ++ L++
Sbjct: 69 AKSIEYVHAACQRVFDDLRTL 89
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ +I +P+ L F SGKL+I G
Sbjct: 102 QNIVASADLGDSLNLNAIAIGLGLENIEYEPEQFPGLVYRIDDPKVVALLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLGHP 85
K D K A + L +LG P
Sbjct: 162 GKTPSDAKRAVTVIVERLTELGMP 185
>gi|10803647|ref|NP_046045.1| transcription factor [Halobacterium sp. NRC-1]
gi|16120090|ref|NP_395678.1| transcription factor [Halobacterium sp. NRC-1]
gi|169237288|ref|YP_001690494.1| putative TATA-binding transcription initiation factor
[Halobacterium salinarum R1]
gi|169237331|ref|YP_001690536.1| putative TATA-binding transcription initiation factor
[Halobacterium salinarum R1]
gi|14423946|sp|O52004.1|TBPC_HALSA RecName: Full=TATA-box-binding protein C; AltName: Full=Box
A-binding protein C; Short=BAP C; AltName: Full=TATA
sequence-binding protein C; Short=TBP C; AltName:
Full=TATA-box factor C
gi|2822378|gb|AAC82884.1| TbpC [Halobacterium sp. NRC-1]
gi|10584194|gb|AAG20813.1| transcription initiation factor IID [Halobacterium sp. NRC-1]
gi|167728354|emb|CAP15158.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
gi|167728847|emb|CAP15739.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
Length = 181
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 5/165 (3%)
Query: 5 NMVGTISVGCPLDLNQINSRVR--YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
N+VG+ +G LD+ + + + YSEY+P +HGL +++ ++SGK +I G
Sbjct: 7 NIVGSGDLGVELDVEPLEADLSTPYSEYDPSNYHGLYVRLEENGPLITVYRSGKYIITGC 66
Query: 63 KHEHDCKLASRKFAKILKQLG--HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFS 119
+ +F +L LG GF + N+VCT + V L+AL + + +
Sbjct: 67 ASMESLHETNEEFLGMLADLGVTEEDTQTGFTVENVVCTAMLDELVSLNALAIGLGLEVT 126
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFD 164
YEPE FPGL+YR + VLL+F NG++VITGAK A++
Sbjct: 127 EYEPEQFPGLVYRPEEIGAVLLVFANGKMVITGAKDTETAESAYE 171
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 92 KIHNIVCTCDVRFPVKLDALH-HVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I NIV + D+ + ++ L + + +S Y+P + GL R+ + ++ ++ +G+ +I
Sbjct: 4 EIANIVGSGDLGVELDVEPLEADLSTPYSEYDPSNYHGLYVRLEENGPLITVYRSGKYII 63
Query: 151 TGAKSRSELHEAFDNIYPVLKSF 173
TG S LHE + +L
Sbjct: 64 TGCASMESLHETNEEFLGMLADL 86
>gi|48477578|ref|YP_023284.1| transcription factor [Picrophilus torridus DSM 9790]
gi|56749679|sp|Q6L1R1.1|TBP_PICTO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|48430226|gb|AAT43091.1| TATA-box binding protein [Picrophilus torridus DSM 9790]
Length = 184
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 91/161 (56%), Gaps = 2/161 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + S+ LDL++I + SEY P +F GLI ++ P+T L F+SGK+ GAK
Sbjct: 10 ENIVASTSLAEHLDLSKIALALEGSEYEPEQFPGLIYRLQEPKTAVLIFRSGKVNCTGAK 69
Query: 64 HEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKL-DALHHVHSQFSSY 121
+ D K LK+ + + NIV D+ + L D + + Y
Sbjct: 70 NLDDVKKTIDIIIDKLKKADIEVYDNPDIIVQNIVAVYDLESNLNLTDIAMSLGLENVEY 129
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
EPE FPGL+YR+ +P+VVLL+F +G++V TGAK +E+ +A
Sbjct: 130 EPEQFPGLVYRVEEPKVVLLLFGSGKVVCTGAKEENEIEQA 170
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 87 KYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNG 146
+ + I NIV + + + L + + + S YEPE FPGLIYR+ +P+ +LIF +G
Sbjct: 3 EMEKITIENIVASTSLAEHLDLSKIA-LALEGSEYEPEQFPGLIYRLQEPKTAVLIFRSG 61
Query: 147 RIVITGAKSRSELHEAFDNIYPVLK 171
++ TGAK+ ++ + D I LK
Sbjct: 62 KVNCTGAKNLDDVKKTIDIIIDKLK 86
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + L+L I + EY P +F GL+ ++ P+ L F SGK++ G
Sbjct: 101 QNIVAVYDLESNLNLTDIAMSLGLENVEYEPEQFPGLVYRVEEPKVVLLLFGSGKVVCTG 160
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
AK E++ + A K K L+++G
Sbjct: 161 AKEENEIEQAVIKVKKDLQKVG 182
>gi|300709793|ref|YP_003735607.1| TATA-box binding family protein [Halalkalicoccus jeotgali B3]
gi|448297437|ref|ZP_21487483.1| transcription factor [Halalkalicoccus jeotgali B3]
gi|299123476|gb|ADJ13815.1| TATA-box binding family protein [Halalkalicoccus jeotgali B3]
gi|445579746|gb|ELY34139.1| transcription factor [Halalkalicoccus jeotgali B3]
Length = 185
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 98/177 (55%), Gaps = 6/177 (3%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++
Sbjct: 7 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCT 66
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALH-HVHS 116
GAK D + + L+ L I+ Q + NIV + D+ + L+A+ +
Sbjct: 67 GAKSTDDVHESLQIVFDKLRDL--EIQVQDDPEIVVQNIVTSADLGRNLNLNAIAIGLGL 124
Query: 117 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
+ YEPE FPGL+YR+ +P+VV L+F +G++VITG K + A D I L+
Sbjct: 125 ENIEYEPEQFPGLVYRLDEPKVVALLFGSGKLVITGGKQPVDAEHAVDKIVSRLEDL 181
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ I N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+I
Sbjct: 5 ETINIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKI 63
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFKKQ 176
V TGAKS ++HE+ ++ L+ + Q
Sbjct: 64 VCTGAKSTDDVHESLQIVFDKLRDLEIQ 91
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ P+ L F SGKL+I G
Sbjct: 101 QNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPKVVALLFGSGKLVITG 160
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D + A K L+ LG
Sbjct: 161 GKQPVDAEHAVDKIVSRLEDLG 182
>gi|10803661|ref|NP_046059.1| transcription factor [Halobacterium sp. NRC-1]
gi|169237306|ref|YP_001690512.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
gi|169237349|ref|YP_001690554.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
gi|14423947|sp|O52018.1|TBPD_HALSA RecName: Full=TATA-box-binding protein D; AltName: Full=Box
A-binding protein D; Short=BAP D; AltName: Full=TATA
sequence-binding protein D; Short=TBP D; AltName:
Full=TATA-box factor D
gi|2822392|gb|AAC82898.1| TbpD [Halobacterium sp. NRC-1]
gi|167728372|emb|CAP15175.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
gi|167728865|emb|CAP15756.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
Length = 186
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + + L L Q+ + + +EYNPG F G+I ++ +P++ L F SGK +
Sbjct: 8 IQIENVVASTDLSQELALEQLATDLPGAEYNPGDFPGVIYRLDDPKSATLIFDSGKAVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIK-YQGFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GA+ D A + L+ LG I + NIVC+ + + L+A+ + +
Sbjct: 68 GAQSVDDVHDAISIVVEDLRDLGIDIPPSPPVHVQNIVCSGSLDQDLNLNAIAIGLGLED 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P VV+L+F +G++VITG + + H A + I+ L
Sbjct: 128 VEYEPEQFPGLVYRLNDPDVVVLLFGSGKLVITGGSNPDDAHHALEIIHERLTDL 182
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+H QN+V + S+ L+LN I + EY P +F GL+ ++ +P L F SGKL+
Sbjct: 99 VHVQNIVCSGSLDQDLNLNAIAIGLGLEDVEYEPEQFPGLVYRLNDPDVVVLLFGSGKLV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G + D A + L LG
Sbjct: 159 ITGGSNPDDAHHALEIIHERLTDLG 183
>gi|257076321|ref|ZP_05570682.1| transcription factor [Ferroplasma acidarmanus fer1]
Length = 184
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 92/161 (57%), Gaps = 2/161 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + S+ LDL++I + SEY P +F GLI ++ +P+T L F+SGK+ GAK
Sbjct: 10 ENIVASTSLAEHLDLSRIALALEGSEYEPEQFPGLIYRLKDPKTAVLIFRSGKVNCTGAK 69
Query: 64 HEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKL-DALHHVHSQFSSY 121
+ + K LK+ + + NIV D+ + L D + + Y
Sbjct: 70 NLENVKKTIDIIIDKLKKAKIEVYDNPDIIVQNIVAVYDLESDLNLTDIAMSLGLENVEY 129
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
EPE FPGL+YR+ +P+VVLL+F +G++V TGAK SE+ +A
Sbjct: 130 EPEQFPGLVYRVEEPKVVLLLFGSGKVVCTGAKEESEIEQA 170
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 87 KYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNG 146
+ + I NIV + + + L + + + S YEPE FPGLIYR+ P+ +LIF +G
Sbjct: 3 EMEKITIENIVASTSLAEHLDLSRIA-LALEGSEYEPEQFPGLIYRLKDPKTAVLIFRSG 61
Query: 147 RIVITGAKSRSELHEAFDNIYPVLKSFK 174
++ TGAK+ + + D I LK K
Sbjct: 62 KVNCTGAKNLENVKKTIDIIIDKLKKAK 89
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + L+L I + EY P +F GL+ ++ P+ L F SGK++ G
Sbjct: 101 QNIVAVYDLESDLNLTDIAMSLGLENVEYEPEQFPGLVYRVEEPKVVLLLFGSGKVVCTG 160
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
AK E + + A K K L+++G
Sbjct: 161 AKEESEIEQAVIKVKKELQKVG 182
>gi|448427036|ref|ZP_21583589.1| transcription factor [Halorubrum terrestre JCM 10247]
gi|445679083|gb|ELZ31564.1| transcription factor [Halorubrum terrestre JCM 10247]
Length = 186
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 11/179 (6%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++
Sbjct: 9 ITVENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA------LHHV 114
GA + L+ L PI+ + NIV + D+ + L+A L H+
Sbjct: 69 GANSIEAVHESLDIVFDELRALQIPIEDPEITVQNIVTSADLGESLNLNAIAIGLGLEHI 128
Query: 115 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P VV L+F +G++V+TG + ++ A D I L
Sbjct: 129 E-----YEPEQFPGLVYRLDEPEVVALLFGSGKVVVTGGTTPADAEAAVDVIVEELNGL 182
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ + N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+I
Sbjct: 7 ETITVENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKI 65
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFK 174
V TGA S +HE+ D ++ L++ +
Sbjct: 66 VCTGANSIEAVHESLDIVFDELRALQ 91
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + + EY P +F GL+ ++ P L F SGK++
Sbjct: 99 ITVQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLVYRLDEPEVVALLFGSGKVV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
+ G D + A + L LG
Sbjct: 159 VTGGTTPADAEAAVDVIVEELNGLG 183
>gi|355571954|ref|ZP_09043162.1| TATA-box-binding protein [Methanolinea tarda NOBI-1]
gi|354825050|gb|EHF09285.1| TATA-box-binding protein [Methanolinea tarda NOBI-1]
Length = 184
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 91/166 (54%), Gaps = 2/166 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + S+ +DL +I+SR+ N +F G + ++ P+ CL F SGK+++
Sbjct: 9 LKIENIVASGSIADSIDLAEISSRIENCMLNRKRFPGAVFRLEKPKAVCLVFSSGKIVLT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGF-KIHNIVCTCDVRFPVKLDALH-HVHSQF 118
G + + A + +K G + + I NIVC+ D + L+ L ++ +
Sbjct: 69 GLREKEALDEAISRIVSAMKDAGVRVHSRPLVTITNIVCSYDAGKIINLNKLVVTLNMEN 128
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFD 164
YEPE FPGL+YR+ PR+V L+F +G+I++TG K+ E+ D
Sbjct: 129 IEYEPEQFPGLVYRLKDPRIVALLFSSGKIILTGGKNLDEIRRGAD 174
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS--YEPELFPGLIYRMVKPRVVLLIFVNG 146
+ KI NIV + + + L + S+ + + FPG ++R+ KP+ V L+F +G
Sbjct: 7 RSLKIENIVASGSIADSIDL---AEISSRIENCMLNRKRFPGAVFRLEKPKAVCLVFSSG 63
Query: 147 RIVITGAKSRSELHEAFDNIYPVLKS 172
+IV+TG + + L EA I +K
Sbjct: 64 KIVLTGLREKEALDEAISRIVSAMKD 89
>gi|21227130|ref|NP_633052.1| transcription factor [Methanosarcina mazei Go1]
gi|452209606|ref|YP_007489720.1| TATA-box binding protein [Methanosarcina mazei Tuc01]
gi|24638251|sp|Q8PY36.1|TBP2_METMA RecName: Full=TATA-box-binding protein 2; AltName: Full=Box
A-binding protein 2; Short=BAP 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP 2; AltName:
Full=TATA-box factor 2
gi|20905461|gb|AAM30724.1| Transcription initiation factor TFIIB [Methanosarcina mazei Go1]
gi|452099508|gb|AGF96448.1| TATA-box binding protein [Methanosarcina mazei Tuc01]
Length = 183
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 90/157 (57%), Gaps = 2/157 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + + DL I S+ +EYN KF GL+ ++ +P+ L F SGK++
Sbjct: 6 IKIENVVASTKLAEEFDLTVIESQFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCT 65
Query: 61 GAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK+ D AK L +G ++ + NIV + D+ + L+A+ + +
Sbjct: 66 GAKNVADVHTVIGNMAKKLNSIGIKTMENPQITVQNIVASADLHTILNLNAIAIGLGLEN 125
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKS 155
YEPE FPGL+YR+ +P+VV+LIF +G++V+TG K+
Sbjct: 126 IEYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVTGGKT 162
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQF--SSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
KI N+V + + + D L + SQF + Y + FPGL+YR+ P+ L+F +G++
Sbjct: 6 IKIENVVAST--KLAEEFD-LTVIESQFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKV 62
Query: 149 VITGAKSRSELHEAFDNIYPVLKSF 173
V TGAK+ +++H N+ L S
Sbjct: 63 VCTGAKNVADVHTVIGNMAKKLNSI 87
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + + L+LN I + EY P +F GL+ +I P+ L F SGKL++ G
Sbjct: 100 QNIVASADLHTILNLNAIAIGLGLENIEYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVTG 159
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K DC+ + L +G
Sbjct: 160 GKTPEDCESGVEVVRQQLDNMG 181
>gi|448451667|ref|ZP_21592967.1| transcription factor [Halorubrum litoreum JCM 13561]
gi|448483665|ref|ZP_21605812.1| transcription factor [Halorubrum arcis JCM 13916]
gi|448514240|ref|ZP_21616992.1| transcription factor [Halorubrum distributum JCM 9100]
gi|448526080|ref|ZP_21619698.1| transcription factor [Halorubrum distributum JCM 10118]
gi|445692908|gb|ELZ45077.1| transcription factor [Halorubrum distributum JCM 9100]
gi|445699280|gb|ELZ51311.1| transcription factor [Halorubrum distributum JCM 10118]
gi|445810523|gb|EMA60548.1| transcription factor [Halorubrum litoreum JCM 13561]
gi|445820680|gb|EMA70489.1| transcription factor [Halorubrum arcis JCM 13916]
Length = 186
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 11/179 (6%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++
Sbjct: 9 ITVENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA------LHHV 114
GA + L+ L PI+ + NIV + D+ + L+A L H+
Sbjct: 69 GANSIEAVHESLDIVFDELRALQIPIEDPEITVQNIVTSADLGESLNLNAIAIGLGLEHI 128
Query: 115 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P VV L+F +G++V+TG S + A D I L
Sbjct: 129 E-----YEPEQFPGLVYRLDEPEVVALLFGSGKVVVTGGTSPEDAAAAVDVIVEELNGL 182
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ + N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+I
Sbjct: 7 ETITVENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKI 65
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFK 174
V TGA S +HE+ D ++ L++ +
Sbjct: 66 VCTGANSIEAVHESLDIVFDELRALQ 91
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + + EY P +F GL+ ++ P L F SGK++
Sbjct: 99 ITVQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLVYRLDEPEVVALLFGSGKVV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
+ G D A + L LG
Sbjct: 159 VTGGTSPEDAAAAVDVIVEELNGLG 183
>gi|84489891|ref|YP_448123.1| transcription factor [Methanosphaera stadtmanae DSM 3091]
gi|121731087|sp|Q2NFC3.1|TBP_METST RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|84373210|gb|ABC57480.1| TATA-box binding protein [Methanosphaera stadtmanae DSM 3091]
Length = 183
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 94/159 (59%), Gaps = 2/159 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + ++G L+L +I + EYN +F GL+ K+ +P+T L F SGKL+
Sbjct: 6 IKVENIVASATLGKSLELPKIAPALENVEYNLEQFPGLVFKLKDPKTAALIFGSGKLVCT 65
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK D A +++L I + KI NIV + ++ + L+A+ + + +
Sbjct: 66 GAKCIEDSIKAIHMTVDKIRELDTEIPEEFEIKIQNIVASANLGKVLNLEAVA-LDLENT 124
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSE 158
YEPE FPGL+YR+ P+VVLL+F +G++V TGAK+ +
Sbjct: 125 EYEPEQFPGLVYRLSDPKVVLLLFGSGKVVCTGAKTADQ 163
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++G L+L + + +EY P +F GL+ ++ +P+ L F SGK++
Sbjct: 97 IKIQNIVASANLGKVLNLEAVALDLENTEYEPEQFPGLVYRLSDPKVVLLLFGSGKVVCT 156
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GAK L +K + L +L
Sbjct: 157 GAKTADQALLGVQKTKERLIEL 178
>gi|10803585|ref|NP_045983.1| transcription factor [Halobacterium sp. NRC-1]
gi|10803718|ref|NP_046116.1| transcription factor [Halobacterium sp. NRC-1]
gi|16120020|ref|NP_395608.1| transcription factor [Halobacterium sp. NRC-1]
gi|16120342|ref|NP_395930.1| transcription factor [Halobacterium sp. NRC-1]
gi|14423949|sp|Q48325.1|TBPB_HALSA RecName: Full=TATA-box-binding protein B; AltName: Full=Box
A-binding protein B; Short=BAP B; AltName: Full=TATA
sequence-binding protein B; Short=TBP B; AltName:
Full=TATA-box factor B
gi|1070345|emb|CAA63691.1| TATA box binding protein [Halobacterium salinarum]
gi|2822316|gb|AAC82822.1| TbpB [Halobacterium sp. NRC-1]
gi|2822449|gb|AAC82955.1| TbpB [Halobacterium sp. NRC-1]
gi|10584112|gb|AAG20743.1| transcription initiation factor IID [Halobacterium sp. NRC-1]
gi|10584490|gb|AAG21065.1| transcription initiation factor IID [Halobacterium sp. NRC-1]
Length = 186
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 96/165 (58%), Gaps = 2/165 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+H +N+V + +G L L+Q+++ + +EYNP F G++ ++ P++ L F+SGK++
Sbjct: 8 IHIENVVASSDLGQELALDQLSTDLPGAEYNPEDFPGVVYRLQEPKSATLIFRSGKVVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D A +++LG + ++ NIV + + + L+A+ + +
Sbjct: 68 GAKSVDDVHEALGIVFGDIRELGIDVTSNPPIEVQNIVSSASLEQSLNLNAIAIGLGLEQ 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAF 163
YEPE FPGL+YR+ P VV+L+F +G++VITG ++ E +A
Sbjct: 128 IEYEPEQFPGLVYRLDDPDVVVLLFGSGKLVITGGQNPDEAEQAL 172
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
I N+V + D+ + LD L + Y PE FPG++YR+ +P+ LIF +G++V TG
Sbjct: 10 IENVVASSDLGQELALDQLS-TDLPGAEYNPEDFPGVVYRLQEPKSATLIFRSGKVVCTG 68
Query: 153 AKSRSELHEAFDNIY 167
AKS ++HEA ++
Sbjct: 69 AKSVDDVHEALGIVF 83
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + S+ L+LN I + EY P +F GL+ ++ +P L F SGKL+
Sbjct: 99 IEVQNIVSSASLEQSLNLNAIAIGLGLEQIEYEPEQFPGLVYRLDDPDVVVLLFGSGKLV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G ++ + + A L +LG
Sbjct: 159 ITGGQNPDEAEQALAHVQDRLTELG 183
>gi|333986797|ref|YP_004519404.1| TATA-box-binding protein [Methanobacterium sp. SWAN-1]
gi|333824941|gb|AEG17603.1| TATA-box-binding protein [Methanobacterium sp. SWAN-1]
Length = 184
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 95/159 (59%), Gaps = 2/159 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + ++G L+L ++ + EYN +F GL+ K+ P+T L F SGKL+
Sbjct: 9 IKVENIVASATLGKSLELPKVAPALEGVEYNVEQFPGLVYKLKEPKTAALIFGSGKLVCT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK + A ++ L I ++ KI NIV + ++ + L+A+ + + +
Sbjct: 69 GAKSIENSIKAIHIAVDKMRSLDPDIPHEFEIKIQNIVASANLMSTLNLEAVA-MDLENT 127
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSE 158
YEPE FPGL+YR+ +P+VVLL+F +G++V TGAKS+ +
Sbjct: 128 EYEPEQFPGLVYRLGEPKVVLLLFGSGKVVCTGAKSKED 166
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ L+L + + +EY P +F GL+ ++ P+ L F SGK++
Sbjct: 100 IKIQNIVASANLMSTLNLEAVAMDLENTEYEPEQFPGLVYRLGEPKVVLLLFGSGKVVCT 159
Query: 61 GAKHEHDCKLASRKFAKILKQL 82
GAK + D +L K + L +L
Sbjct: 160 GAKSKEDAQLGVEKTKERLIEL 181
>gi|345006113|ref|YP_004808966.1| TATA-box-binding protein [halophilic archaeon DL31]
gi|344321739|gb|AEN06593.1| TATA-box-binding protein [halophilic archaeon DL31]
Length = 186
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 95/168 (56%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++
Sbjct: 8 ISIENVVASTGIGLELDLQSVAMDLEGADYDPEQFPGLVYRTEEPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK + L++L P++ + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDAVHESLGIVFDELRKLDIPVEDGPEITVQNIVSSADLGESLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YR+ +P VV L+F +G++VITG K+ ++ +A D I
Sbjct: 128 IEYEPEQFPGLVYRLEEPDVVALLFGSGKLVITGGKTPADAEDAIDVI 175
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ I N+V + + + L ++ + + + Y+PE FPGL+YR +P+ LIF +G+I
Sbjct: 6 ETISIENVVASTGIGLELDLQSVA-MDLEGADYDPEQFPGLVYRTEEPKSAALIFRSGKI 64
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFK 174
V TGAKS +HE+ ++ L+
Sbjct: 65 VCTGAKSTDAVHESLGIVFDELRKLD 90
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGKL+
Sbjct: 99 ITVQNIVSSADLGESLNLNAIAIGLGLENIEYEPEQFPGLVYRLEEPDVVALLFGSGKLV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G K D + A ++ L LG
Sbjct: 159 ITGGKTPADAEDAIDVISERLTDLG 183
>gi|154151222|ref|YP_001404840.1| transcription factor [Methanoregula boonei 6A8]
gi|153999774|gb|ABS56197.1| TATA-box binding [Methanoregula boonei 6A8]
Length = 184
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 100/175 (57%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + + +DLN+++++++ E N +F G + +I NP+ L F SGK+++
Sbjct: 9 LKIENVVASGVIAESIDLNEVSAKIKSCELNTKRFPGAVYRIENPKIASLIFSSGKVVLT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLD-ALHHVHSQF 118
G + + K K LK+ G ++ I NIVC+ D+ + L+ + ++ +
Sbjct: 69 GIRDDKALKDGLAIIIKSLKEAGVETLEKPRVNITNIVCSYDIGKYINLNKVVVTLNLEN 128
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P++V L+F +G+I++TG K+ ++ + D + L+S
Sbjct: 129 IEYEPEQFPGLVYRIKDPKIVALLFSSGKIILTGGKNLDDIKKGLDFLEQKLESI 183
>gi|20089077|ref|NP_615152.1| transcription factor [Methanosarcina acetivorans C2A]
gi|24638263|sp|Q8TU94.1|TBP2_METAC RecName: Full=TATA-box-binding protein 2; AltName: Full=Box
A-binding protein 2; Short=BAP 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP 2; AltName:
Full=TATA-box factor 2
gi|19913938|gb|AAM03632.1| TATA-binding protein [Methanosarcina acetivorans C2A]
Length = 185
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 94/164 (57%), Gaps = 4/164 (2%)
Query: 4 QNMVGTISVGCPLDLNQI-NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
+N+V + + DL ++ ++ ++ + YN KF GL+ +I NP+ L F SGK++ G
Sbjct: 8 ENIVASTRLAEDFDLQKLLDTGLKGAVYNKNKFPGLVYRIENPKAAFLIFASGKVVCTGT 67
Query: 63 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIH--NIVCTCDVRFPVKLDA-LHHVHSQFS 119
K+ + ++A A L +G+ Y +IH N+V + ++R + L+A L +
Sbjct: 68 KNVENSRIALFNLANELNSIGYKGIYLKPEIHVQNVVASANLRTSLNLNAVLSAFGVENV 127
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAF 163
YEPE+FPGL+Y++ PRVV+L+F G++VITG K + E
Sbjct: 128 EYEPEVFPGLVYKLADPRVVVLVFRTGKLVITGGKCPEDCEEGL 171
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSR--VRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+H QN+V + ++ L+LN + S V EY P F GL+ K+ +PR L F++GKL+
Sbjct: 98 IHVQNVVASANLRTSLNLNAVLSAFGVENVEYEPEVFPGLVYKLADPRVVVLVFRTGKLV 157
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G K DC+ R L LG
Sbjct: 158 ITGGKCPEDCEEGLRIIKTQLDNLG 182
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
I NIV + + L L + + Y FPGL+YR+ P+ LIF +G++V TG
Sbjct: 7 IENIVASTRLAEDFDLQKLLDTGLKGAVYNKNKFPGLVYRIENPKAAFLIFASGKVVCTG 66
Query: 153 AKSRSELHEAFDNIYPVLKS 172
K+ A N+ L S
Sbjct: 67 TKNVENSRIALFNLANELNS 86
>gi|448611222|ref|ZP_21661856.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
gi|445743654|gb|ELZ95135.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
Length = 189
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 12/177 (6%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GAK
Sbjct: 11 ENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCTGAK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDA------LHHVHS 116
+ L++L P+ + NIV + D+ + L+A L H+
Sbjct: 71 STDGVHESLEIVFDKLRELQIPVDDDPEITVQNIVTSADLGENLNLNAIAIGLGLEHIE- 129
Query: 117 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P VV L+F +G++VITG K + +A D I L
Sbjct: 130 ----YEPEQFPGLVYRLDEPSVVALLFGSGKLVITGGKKPQDAEDAVDVIMSRLSDL 182
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+IV
Sbjct: 8 ITIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS +HE+ + ++ L+ +
Sbjct: 67 TGAKSTDGVHESLEIVFDKLRELQ 90
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + + EY P +F GL+ ++ P L F SGKL+I G
Sbjct: 102 QNIVTSADLGENLNLNAIAIGLGLEHIEYEPEQFPGLVYRLDEPSVVALLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D + A L LG
Sbjct: 162 GKKPQDAEDAVDVIMSRLSDLG 183
>gi|448503146|ref|ZP_21612913.1| transcription factor [Halorubrum coriense DSM 10284]
gi|445693155|gb|ELZ45315.1| transcription factor [Halorubrum coriense DSM 10284]
Length = 186
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 93/179 (51%), Gaps = 11/179 (6%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++
Sbjct: 9 ITVENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA------LHHV 114
GA + + L+ L PI+ + NIV + D+ + L+A L H+
Sbjct: 69 GANSIDAVYESLDIVFEELRALQIPIEDPEVTVQNIVTSADLGESLNLNAIAIGLGLEHI 128
Query: 115 HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P VV L+F +G++V+TG S + A D I L
Sbjct: 129 E-----YEPEQFPGLVYRLDEPDVVALLFGSGKVVVTGGTSPEDAAAAVDVIVEELDGL 182
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ + N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+I
Sbjct: 7 ETITVENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKI 65
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFK 174
V TGA S ++E+ D ++ L++ +
Sbjct: 66 VCTGANSIDAVYESLDIVFEELRALQ 91
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + + EY P +F GL+ ++ P L F SGK+++ G
Sbjct: 102 QNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLVYRLDEPDVVALLFGSGKVVVTG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
D A + L LG
Sbjct: 162 GTSPEDAAAAVDVIVEELDGLG 183
>gi|452205985|ref|YP_007486107.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
gi|452082085|emb|CCQ35336.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
Length = 187
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 94/175 (53%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + R L+ L + + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHESLRIVFDKLRDLEIQVDEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P VV L+F +G++VITG K + +A D I L+
Sbjct: 128 IEYEPEQFPGLVYRLDDPDVVALLFGSGKLVITGGKEPDDAKKAVDKIVSRLEEL 182
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ I N+V + + + L ++ + + + Y+PE FPGL+YR +P+ LIF +G+I
Sbjct: 6 ETINIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKI 64
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFKKQ 176
V TGAKS ++HE+ ++ L+ + Q
Sbjct: 65 VCTGAKSTDDVHESLRIVFDKLRDLEIQ 92
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ +P L F SGKL+I G
Sbjct: 102 QNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPDVVALLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D K A K L++LG
Sbjct: 162 GKEPDDAKKAVDKIVSRLEELG 183
>gi|21227129|ref|NP_633051.1| transcription factor [Methanosarcina mazei Go1]
gi|452209605|ref|YP_007489719.1| TATA-box binding protein [Methanosarcina mazei Tuc01]
gi|24638252|sp|Q8PY37.1|TBP1_METMA RecName: Full=TATA-box-binding protein 1; AltName: Full=Box
A-binding protein 1; Short=BAP 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP 1; AltName:
Full=TATA-box factor 1
gi|20905460|gb|AAM30723.1| Transcription initiation factor TFIIB [Methanosarcina mazei Go1]
gi|452099507|gb|AGF96447.1| TATA-box binding protein [Methanosarcina mazei Tuc01]
Length = 183
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + + DL I S +EYN KF GL+ ++ +P+ L F SGK++
Sbjct: 6 IKIENVVASTKLAEEFDLTVIESEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCT 65
Query: 61 GAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
G K+ D AK L +G I+ + NIV + D+ + L+A+ + +
Sbjct: 66 GTKNVADVHTVVGNLAKKLNSIGIKTIENPQITVQNIVASADLHTILNLNAIAIGLGLEN 125
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P+VV+LIF +G++V+ G KS + + + + L S
Sbjct: 126 IEYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVAGGKSPEDCERSVEVVRQQLDSM 180
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + + L+LN I + EY P +F GL+ +I P+ L F SGKL+
Sbjct: 97 ITVQNIVASADLHTILNLNAIAIGLGLENIEYEPEQFPGLVYRIDEPKVVVLIFSSGKLV 156
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
+ G K DC+ + + L +G
Sbjct: 157 VAGGKSPEDCERSVEVVRQQLDSMG 181
>gi|452207289|ref|YP_007487411.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
gi|452083389|emb|CCQ36681.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
Length = 187
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 2/165 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + + L L+ + + S+Y+P F GLI + P+ L F+SGK++
Sbjct: 8 IDIENVVASTDIDQELALDSLAMDLSGSDYDPDNFPGLIYRTQEPQAANLIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GA D + + + L+ LG I+ + NIV + D+R + L+A+ +
Sbjct: 68 GANTVDDVHSSLQIVCETLRDLGIDVIEAPTITVQNIVSSADLRAQLNLNAIAIGFGLED 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAF 163
YEPE FPGL+YR+ P VV L+F +G++VITGAK+ EA
Sbjct: 128 VEYEPEQFPGLVYRLDTPDVVTLLFGSGKVVITGAKTPDAAEEAL 172
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ I N+V + D+ + LD+L S S Y+P+ FPGLIYR +P+ LIF +G+I
Sbjct: 6 ETIDIENVVASTDIDQELALDSLAMDLSG-SDYDPDNFPGLIYRTQEPQAANLIFRSGKI 64
Query: 149 VITGAKSRSELHEAFDNIYPVLKSF 173
V TGA + ++H + + L+
Sbjct: 65 VCTGANTVDDVHSSLQIVCETLRDL 89
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + + L+LN I + EY P +F GL+ ++ P L F SGK++
Sbjct: 99 ITVQNIVSSADLRAQLNLNAIAIGFGLEDVEYEPEQFPGLVYRLDTPDVVTLLFGSGKVV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I GAK + A +K + L +LG
Sbjct: 159 ITGAKTPDAAEEALKKVSGELSELG 183
>gi|328704605|ref|XP_003242546.1| PREDICTED: TATA box-binding protein-like protein 1-like
[Acyrthosiphon pisum]
Length = 301
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 85/140 (60%), Gaps = 2/140 (1%)
Query: 38 LIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNI 96
L MK+ P T + SGK+ G+ E K+ASR+FA+I+++LG H K+ ++I N+
Sbjct: 97 LTMKLRKPNATATIWSSGKIACTGSTSESHAKIASRRFARIIQKLGYHNAKFSSYRIVNV 156
Query: 97 VCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSR 156
+ +C + FP+K+ + + YEPEL PG+ +++ + + L IF G I +T A S
Sbjct: 157 LGSCSLPFPIKVIQFSEKYKTIAQYEPELHPGVTFKIKELKATLKIFSTGSITVT-APSV 215
Query: 157 SELHEAFDNIYPVLKSFKKQ 176
S +++A + IYP++ F+++
Sbjct: 216 SNVYQAIEQIYPMVFPFRRE 235
>gi|14586424|emb|CAC42920.1| TATA-binding protein [Methanosarcina mazei]
Length = 183
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + + DL I S +EYN KF GL+ ++ +P+ L F SGK++
Sbjct: 6 IKIENVVASTKLAEEFDLTVIESEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCT 65
Query: 61 GAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
G K+ D AK L +G I+ + NIV + D+ + L+A+ + +
Sbjct: 66 GTKNVADVHTVVGNLAKKLNSIGIKTIEDPQITVQNIVASADLHTILNLNAIAIGLGLEN 125
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P+VV+LIF +G++V+ G KS + + + + L S
Sbjct: 126 IEYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVAGGKSPEDCERSVEVVRQQLDSM 180
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + + L+LN I + EY P +F GL+ +I P+ L F SGKL+
Sbjct: 97 ITVQNIVASADLHTILNLNAIAIGLGLENIEYEPEQFPGLVYRIDEPKVVVLIFSSGKLV 156
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
+ G K DC+ + + L +G
Sbjct: 157 VAGGKSPEDCERSVEVVRQQLDSMG 181
>gi|268324523|emb|CBH38111.1| TATA-box binding protein 2 [uncultured archaeon]
Length = 183
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 99/175 (56%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + LDL + S++ + + KF GL+ + P++ L F+SGK++
Sbjct: 6 IKIENVVANARITESLDLEYVESQLEEAMFTKKKFPGLVYRTKEPKSAFLIFRSGKVVCT 65
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIK-YQGFKIHNIVCTCDVRFPVKLDAL-HHVHSQF 118
GAK + ++ K + L+ +G ++ + FK+ NIV + D+ + L A+ + +
Sbjct: 66 GAKTKEGVRVVMDKLSTDLRGIGIEVEEHPEFKVQNIVASADLGKELNLGAIVMGLELEG 125
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE+FPGL+YR+ P+ +LIF +G++VITG K+ + ++ + + L+S
Sbjct: 126 MEYEPEVFPGLVYRITDPKSAILIFSSGKLVITGGKTLDDCKKSVEILLTKLRSL 180
>gi|443686931|gb|ELT90049.1| hypothetical protein CAPTEDRAFT_75203, partial [Capitella teleta]
Length = 196
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 98/172 (56%), Gaps = 4/172 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGA 62
N+V + S C L+L +I + Y P +G++ MK+ P TT + SG + G+
Sbjct: 27 NNVVCSFSTRCHLNLKRIAREGNHVIYKPE--NGMVSMKLRKPYTTANIWSSGSITATGS 84
Query: 63 KHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
E D K+A+R++ +IL+++G +++ +++ N++ TC + F +++ H + SYE
Sbjct: 85 TSEVDAKIAARRYCRILQKMGFRVRFGRYRVVNVLGTCSLPFGIRISQFAQDHHKQCSYE 144
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
PEL PG Y M++PR L +F G I +T + + + A ++I+P++ ++
Sbjct: 145 PELHPGATYTMMEPRATLKLFTTGSITVTAPRVEN-VKLAINHIWPLVFKYR 195
>gi|290558963|gb|EFD92347.1| TATA-box binding family protein [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 180
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 103/173 (59%), Gaps = 6/173 (3%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V +IS+ + LN++ ++ ++YNP +F GL+ + + T L F SGKL+ G +
Sbjct: 10 ENVVASISLRVQIPLNKL-KKLPNTKYNPEQFPGLVFRFPDIHVTFLVFGSGKLVCTGGR 68
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
+ D KLA K K LK++ +K + +I NIV + ++ + L+ + + + + Y
Sbjct: 69 SKEDIKLAMTKLLKELKKINITVKSEWKIEIQNIVASGNLNKSLDLNKIAYNIDE-TEYN 127
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
PE FPGL+Y++V ++ L+F G+IV TGAK+ E+ EA I ++K+ KK
Sbjct: 128 PEQFPGLVYKIVNSKITFLLFGTGKIVCTGAKNVEEIDEA---IKVLIKAIKK 177
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ LDLN+I + +EYNP +F GL+ KI+N + T L F +GK++
Sbjct: 97 IEIQNIVASGNLNKSLDLNKIAYNIDETEYNPEQFPGLVYKIVNSKITFLLFGTGKIVCT 156
Query: 61 GAKHEHDCKLASRKFAKILKQLGH 84
GAK+ + A + K +K+ G+
Sbjct: 157 GAKNVEEIDEAIKVLIKAIKKAGN 180
>gi|448457842|ref|ZP_21595847.1| transcription factor [Halorubrum lipolyticum DSM 21995]
gi|445810143|gb|EMA60174.1| transcription factor [Halorubrum lipolyticum DSM 21995]
Length = 185
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 11 ENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGAN 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA------LHHVHSQ 117
+ L++L PI+ + NIV + D+ + L+A L H+
Sbjct: 71 SIEAVHESLDLVFDELRKLQIPIEDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIE-- 128
Query: 118 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P VV L+F +G++V+TG S + A D I L
Sbjct: 129 ---YEPEQFPGLVYRIDEPDVVALLFGSGKLVVTGGTSPDDAAAAVDVIVEELDGL 181
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ I N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+I
Sbjct: 6 ETITIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKI 64
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFK 174
V TGA S +HE+ D ++ L+ +
Sbjct: 65 VCTGANSIEAVHESLDLVFDELRKLQ 90
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + + EY P +F GL+ +I P L F SGKL+
Sbjct: 98 ITVQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLVYRIDEPDVVALLFGSGKLV 157
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
+ G D A + L LG
Sbjct: 158 VTGGTSPDDAAAAVDVIVEELDGLG 182
>gi|448730744|ref|ZP_21713048.1| transcription factor [Halococcus saccharolyticus DSM 5350]
gi|445792921|gb|EMA43516.1| transcription factor [Halococcus saccharolyticus DSM 5350]
Length = 191
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 1/167 (0%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + +G +DL + + ++++PG+F GLI + + TCL F+SGK+
Sbjct: 14 LETQNVVASSGIGQEIDLESVAMDLTGADFDPGQFPGLIYRPADAAATCLLFRSGKITCT 73
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFS 119
GA + L +LG + + NIV D+ + L+A+ + +
Sbjct: 74 GAGSIEEVHETVHVAVDALAELGIDVGTPEVTVQNIVSGADLGERLNLNAIAIGLGLESV 133
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YR+ P VV L+F +G++VITGAK A + I
Sbjct: 134 EYEPEQFPGLVYRLDDPDVVALLFGSGKMVITGAKIHDNAEAALEEI 180
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V +G L+LN I + EY P +F GL+ ++ +P L F SGK++I G
Sbjct: 107 QNIVSGADLGERLNLNAIAIGLGLESVEYEPEQFPGLVYRLDDPDVVALLFGSGKMVITG 166
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
AK + + A + + L LG
Sbjct: 167 AKIHDNAEAALEEIIRRLNDLG 188
>gi|153791987|ref|NP_001093265.1| TATA box binding protein-like 1 [Takifugu rubripes]
gi|148910859|tpg|DAA06040.1| TPA_inf: TATA box binding protein-like 1 [Takifugu rubripes]
Length = 185
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 2/172 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
N+V T C L+L I Y P + + MK+ PR T + SGK++ GA
Sbjct: 14 SNVVATFRTRCHLNLRTIALEGNNVIYKPEQ-GTVTMKLRKPRITANIWSSGKIICTGAS 72
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E + KL +R+ A+ L++LG +K+ FK+ N++ C + F + L + ++YEP
Sbjct: 73 SEDEAKLGARRLARCLQKLGFKVKFSAFKVVNVMAGCSMPFKISLIDFTKKNRPIATYEP 132
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EL+P +Y M +P+ + +F G + I G S + A ++YP+L ++
Sbjct: 133 ELYPAAMYTMRQPKATIKVFSTGSVTILGP-SVDNVAAAVQHVYPLLSECRR 183
>gi|16120311|ref|NP_395899.1| transcription factor [Halobacterium sp. NRC-1]
gi|14423950|sp|Q9HHE9.1|TBPF_HALSA RecName: Full=TATA-box-binding protein F; AltName: Full=Box
A-binding protein F; Short=BAP F; AltName: Full=TATA
sequence-binding protein F; Short=TBP F; AltName:
Full=TATA-box factor F
gi|10584455|gb|AAG21034.1| transcription initiation factor IID [Halobacterium sp. NRC-1]
Length = 186
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 93/165 (56%), Gaps = 2/165 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+H +N+V + +G L L+Q+ + + +EYNP F G++ ++ P++ L F+SGK++
Sbjct: 8 IHIENVVASSDLGQELALDQLATDLDGAEYNPEDFPGVVYRLQEPKSATLIFRSGKVVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK A L++LG + K+ NIV + + + L+A+ + +
Sbjct: 68 GAKSVDAVHDALEIVFDDLRELGIDVDSTPPVKVQNIVSSASLEQSLNLNAIAIGLGLEQ 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAF 163
YEPE FPGL+YR+ P VV+L+F +G++VITGA ++ A
Sbjct: 128 IEYEPEQFPGLVYRLDDPDVVVLLFGSGKLVITGAAESADAQHAL 172
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
I N+V + D+ + LD L + Y PE FPG++YR+ +P+ LIF +G++V TG
Sbjct: 10 IENVVASSDLGQELALDQLA-TDLDGAEYNPEDFPGVVYRLQEPKSATLIFRSGKVVCTG 68
Query: 153 AKSRSELHEAFDNIYPVLKSF 173
AKS +H+A + ++ L+
Sbjct: 69 AKSVDAVHDALEIVFDDLREL 89
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + S+ L+LN I + EY P +F GL+ ++ +P L F SGKL+I G
Sbjct: 102 QNIVSSASLEQSLNLNAIAIGLGLEQIEYEPEQFPGLVYRLDDPDVVVLLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
A D + A L +LG
Sbjct: 162 AAESADAQHALAHVNDRLTELG 183
>gi|170590133|ref|XP_001899827.1| TBP-like factor [Brugia malayi]
gi|158592746|gb|EDP31343.1| TBP-like factor, putative [Brugia malayi]
Length = 403
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 83/141 (58%), Gaps = 4/141 (2%)
Query: 38 LIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL-KQLG---HPIKYQGFKI 93
L+ + NP + SGK+ I+G + E +CK A+R A+++ K +G ++ + +++
Sbjct: 193 LLKQKRNPSCYVKIYSSGKIYIVGCRSESECKRAARGVARMVQKTMGKMMDVVRIRNYRV 252
Query: 94 HNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGA 153
N++ TC + F VK++ L + S YEPEL GLI+R PR L I G I +TGA
Sbjct: 253 CNVLATCKMPFGVKIEELAQKYPDCSQYEPELSVGLIWRSTNPRATLRIHTTGSITVTGA 312
Query: 154 KSRSELHEAFDNIYPVLKSFK 174
S S++ +A + IYP++K F+
Sbjct: 313 ASESDVMKAVEVIYPIVKEFR 333
>gi|257052326|ref|YP_003130159.1| transcription factor [Halorhabdus utahensis DSM 12940]
gi|256691089|gb|ACV11426.1| TATA-box binding family protein [Halorhabdus utahensis DSM 12940]
Length = 186
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 94/175 (53%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + R L+ L + + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHESLRIVFGKLRDLEIQVDEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P VV L+F +G++VITG K + +A D I L+
Sbjct: 128 IEYEPEQFPGLVYRLDDPDVVALLFGSGKLVITGGKEPDDAKKAVDKIVSRLEEL 182
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ I N+V + + + L ++ + + + Y+PE FPGL+YR +P+ LIF +G+I
Sbjct: 6 ETINIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKI 64
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFKKQ 176
V TGAKS ++HE+ ++ L+ + Q
Sbjct: 65 VCTGAKSTDDVHESLRIVFGKLRDLEIQ 92
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ +P L F SGKL+I G
Sbjct: 102 QNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPDVVALLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D K A K L++LG
Sbjct: 162 GKEPDDAKKAVDKIVSRLEELG 183
>gi|448687445|ref|ZP_21693811.1| transcription factor [Haloarcula japonica DSM 6131]
gi|445780096|gb|EMA30999.1| transcription factor [Haloarcula japonica DSM 6131]
Length = 182
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 85/164 (51%), Gaps = 5/164 (3%)
Query: 5 NMVGTISVGCPLDLNQINSRVR--YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
N VG+ +G LD+ ++ S + Y+EYNP +HGL ++++ ++SGK +I G
Sbjct: 6 NAVGSRDLGVELDVAEVKSDLDLPYTEYNPSNYHGLYLRLVADGPLITVYRSGKYIISGC 65
Query: 63 KHEHDCKLASRKFAKILKQLG--HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFS 119
+ F L +L + FK+ N+VCT + PV L+ L + +
Sbjct: 66 STLEQLYETNGAFLTALSELDIVNAETETRFKVQNVVCTAQLDDPVDLNTLSVALGLESV 125
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAF 163
YEPE FPGLIYR VLL+F NG+IVITG + +AF
Sbjct: 126 EYEPEQFPGLIYRPADHPAVLLVFANGKIVITGGSDVATAEDAF 169
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 4 QNMVGTISVGCPLDLNQINSR--VRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T + P+DLN ++ + EY P +F GLI + + L F +GK++I G
Sbjct: 99 QNVVCTAQLDDPVDLNTLSVALGLESVEYEPEQFPGLIYRPADHPAVLLVFANGKIVITG 158
Query: 62 AKHEHDCKLASRKFAKILKQL 82
D A F + +Q+
Sbjct: 159 GS---DVATAEDAFKHLQEQV 176
>gi|4688630|emb|CAB41467.1| TBP-like factor [Brugia malayi]
Length = 295
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 83/141 (58%), Gaps = 4/141 (2%)
Query: 38 LIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL-KQLG---HPIKYQGFKI 93
L+ + NP + SGK+ I+G + E +CK A+R A+++ K +G ++ + +++
Sbjct: 85 LLKQKRNPSCYVKIYSSGKIYIVGCRSESECKRAARGVARMVQKTMGKMMDVVRIRNYRV 144
Query: 94 HNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGA 153
N++ TC + F VK++ L + S YEPEL GLI+R PR L I G I +TGA
Sbjct: 145 CNVLATCKMPFGVKIEELAQKYPDCSQYEPELSVGLIWRSTNPRATLRIHTTGSITVTGA 204
Query: 154 KSRSELHEAFDNIYPVLKSFK 174
S S++ +A + IYP++K F+
Sbjct: 205 ASESDVMKAVEVIYPIVKEFR 225
>gi|170590131|ref|XP_001899826.1| TBP-like factor [Brugia malayi]
gi|158592745|gb|EDP31342.1| TBP-like factor, putative [Brugia malayi]
Length = 401
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 83/141 (58%), Gaps = 4/141 (2%)
Query: 38 LIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKIL-KQLG---HPIKYQGFKI 93
L+ + NP + SGK+ I+G + E +CK A+R A+++ K +G ++ + +++
Sbjct: 191 LLKQKRNPSCYVKIYSSGKIYIVGCRSESECKRAARGVARMVQKTMGKMMDVVRIRNYRV 250
Query: 94 HNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGA 153
N++ TC + F VK++ L + S YEPEL GLI+R PR L I G I +TGA
Sbjct: 251 CNVLATCKMPFGVKIEELAQKYPDCSQYEPELSVGLIWRSTNPRATLRIHTTGSITVTGA 310
Query: 154 KSRSELHEAFDNIYPVLKSFK 174
S S++ +A + IYP++K F+
Sbjct: 311 ASESDVMKAVEVIYPIVKEFR 331
>gi|20089176|ref|NP_615251.1| transcription factor [Methanosarcina acetivorans C2A]
gi|24638262|sp|Q8TTZ7.1|TBP3_METAC RecName: Full=TATA-box-binding protein 3; AltName: Full=Box
A-binding protein 3; Short=BAP 3; AltName: Full=TATA
sequence-binding protein 3; Short=TBP 3; AltName:
Full=TATA-box factor 3
gi|19914048|gb|AAM03731.1| TATA-binding protein [Methanosarcina acetivorans C2A]
Length = 185
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 98/174 (56%), Gaps = 11/174 (6%)
Query: 4 QNMVGTISVGCPLDLNQI-NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
+N+V + ++ DL +I +S + +EYN KF GL+ +I NP+ L F SGK++ GA
Sbjct: 8 ENVVASTALATEFDLVKIMDSGLEGAEYNKTKFPGLVYRIDNPKAAFLIFTSGKVVCTGA 67
Query: 63 KHEHDCKLASRKFAKILKQLG-HPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHS-QFS 119
K ++ A A LK +G I + + NIV + D++ + L+ + +
Sbjct: 68 KTINNAHKAITNLANKLKDIGCDKINLEPEIHVQNIVASADLKTTLNLNTIAIAFGLENV 127
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSE-------LHEAFDNI 166
YEPE+FPGLIYR+ P+VV+L+F +G++VITG K + + + FDN+
Sbjct: 128 EYEPEVFPGLIYRVEAPKVVVLVFSSGKLVITGGKCEEDCNGGLRIVRKEFDNL 181
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSR--VRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+H QN+V + + L+LN I + EY P F GLI ++ P+ L F SGKL+
Sbjct: 98 IHVQNIVASADLKTTLNLNTIAIAFGLENVEYEPEVFPGLIYRVEAPKVVVLVFSSGKLV 157
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G K E DC R K LG
Sbjct: 158 ITGGKCEEDCNGGLRIVRKEFDNLG 182
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
I N+V + + L + + + Y FPGL+YR+ P+ LIF +G++V TG
Sbjct: 7 IENVVASTALATEFDLVKIMDSGLEGAEYNKTKFPGLVYRIDNPKAAFLIFTSGKVVCTG 66
Query: 153 AKSRSELHEAFDNIYPVLKSF 173
AK+ + H+A N+ LK
Sbjct: 67 AKTINNAHKAITNLANKLKDI 87
>gi|448462784|ref|ZP_21597843.1| transcription factor [Halorubrum kocurii JCM 14978]
gi|445818005|gb|EMA67873.1| transcription factor [Halorubrum kocurii JCM 14978]
Length = 185
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 11 ENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGAN 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA------LHHVHSQ 117
+ L+ L PI+ + NIV + D+ + L+A L H+
Sbjct: 71 SIDAVHESLALVFDELRALQIPIEDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIE-- 128
Query: 118 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P VV L+F +G++V+TG S + A D I L
Sbjct: 129 ---YEPEQFPGLVYRIDEPDVVALLFGSGKLVVTGGTSPDDAAAAVDVIVEELDGL 181
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ I N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+I
Sbjct: 6 ETITIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKI 64
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFK 174
V TGA S +HE+ ++ L++ +
Sbjct: 65 VCTGANSIDAVHESLALVFDELRALQ 90
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + + EY P +F GL+ +I P L F SGKL+
Sbjct: 98 ITVQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLVYRIDEPDVVALLFGSGKLV 157
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
+ G D A + L LG
Sbjct: 158 VTGGTSPDDAAAAVDVIVEELDGLG 182
>gi|448727075|ref|ZP_21709452.1| transcription factor [Halococcus morrhuae DSM 1307]
gi|448737752|ref|ZP_21719787.1| transcription factor [Halococcus thailandensis JCM 13552]
gi|445792275|gb|EMA42886.1| transcription factor [Halococcus morrhuae DSM 1307]
gi|445803308|gb|EMA53606.1| transcription factor [Halococcus thailandensis JCM 13552]
Length = 189
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 94/175 (53%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++
Sbjct: 10 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCT 69
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + L+ L ++ + NIV + D++ + L+A+ + +
Sbjct: 70 GAKSTADVHESLEIVFDKLRDLEIRVEEDPEIVVQNIVTSADLQKTLNLNAIAIGLGLEN 129
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P VV L+F +G++VITG K ++ A D I L
Sbjct: 130 IEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITGGKEPADAEHAVDKITDRLDEL 184
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ I N+V + + + L ++ + + + Y+PE FPGL+YR +P+ LIF +G+I
Sbjct: 8 ETINIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKI 66
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFK 174
V TGAKS +++HE+ + ++ L+ +
Sbjct: 67 VCTGAKSTADVHESLEIVFDKLRDLE 92
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + + L+LN I + EY P +F GL+ ++ +P L F SGKL+I G
Sbjct: 104 QNIVTSADLQKTLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITG 163
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D + A K L +LG
Sbjct: 164 GKEPADAEHAVDKITDRLDELG 185
>gi|448488858|ref|ZP_21607457.1| transcription factor [Halorubrum californiensis DSM 19288]
gi|445695479|gb|ELZ47582.1| transcription factor [Halorubrum californiensis DSM 19288]
Length = 186
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 95/180 (52%), Gaps = 13/180 (7%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++
Sbjct: 9 ITVENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCT 68
Query: 61 GAKH-EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA------LHH 113
GA E + FA+ L+ L PI+ + NIV + D+ + L+A L H
Sbjct: 69 GANSIEAVHESLDIVFAE-LRALQIPIEDPKITVQNIVTSADLGESLNLNAIAIGLGLEH 127
Query: 114 VHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
+ YEPE FPGL+YR+ P VV L+F +G++V+TG + + A D I L
Sbjct: 128 IE-----YEPEQFPGLVYRLDDPEVVALLFGSGKVVVTGGTTPDDAAAAVDVIVEELNGL 182
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ + N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+I
Sbjct: 7 ETITVENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKI 65
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFK 174
V TGA S +HE+ D ++ L++ +
Sbjct: 66 VCTGANSIEAVHESLDIVFAELRALQ 91
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + + EY P +F GL+ ++ +P L F SGK++
Sbjct: 99 ITVQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLVYRLDDPEVVALLFGSGKVV 158
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
+ G D A + L LG
Sbjct: 159 VTGGTTPDDAAAAVDVIVEELNGLG 183
>gi|448730264|ref|ZP_21712572.1| transcription factor [Halococcus saccharolyticus DSM 5350]
gi|448735254|ref|ZP_21717470.1| transcription factor [Halococcus salifodinae DSM 8989]
gi|445793432|gb|EMA44004.1| transcription factor [Halococcus saccharolyticus DSM 5350]
gi|445798592|gb|EMA48989.1| transcription factor [Halococcus salifodinae DSM 8989]
Length = 189
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++
Sbjct: 10 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCT 69
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + L+ L ++ + NIV + D++ + L+A+ + +
Sbjct: 70 GAKSTADVHESLEIVFDKLRDLEIRVEDDPEIVVQNIVTSADLQKTLNLNAIAIGLGLEN 129
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YR+ P VV L+F +G++VITG K ++ A D I
Sbjct: 130 IEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITGGKEPADAEHAVDKI 177
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ I N+V + + + L ++ + + + Y+PE FPGL+YR +P+ LIF +G+I
Sbjct: 8 ETINIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKI 66
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFK 174
V TGAKS +++HE+ + ++ L+ +
Sbjct: 67 VCTGAKSTADVHESLEIVFDKLRDLE 92
>gi|448441657|ref|ZP_21589264.1| transcription factor [Halorubrum saccharovorum DSM 1137]
gi|445688693|gb|ELZ40944.1| transcription factor [Halorubrum saccharovorum DSM 1137]
Length = 185
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 11 ENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGAN 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA------LHHVHSQ 117
+ L++L PI+ + NIV + D+ + L+A L H+
Sbjct: 71 SIDAVHESLDLVFDELRKLQIPIEDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIE-- 128
Query: 118 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P VV L+F +G++VITG + + A D I L
Sbjct: 129 ---YEPEQFPGLVYRIDDPDVVALLFGSGKLVITGGTTPDDAAAAVDVIVEELDGL 181
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ I N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+I
Sbjct: 6 ETITIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKI 64
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFK 174
V TGA S +HE+ D ++ L+ +
Sbjct: 65 VCTGANSIDAVHESLDLVFDELRKLQ 90
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + + EY P +F GL+ +I +P L F SGKL+
Sbjct: 98 ITVQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLVYRIDDPDVVALLFGSGKLV 157
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G D A + L LG
Sbjct: 158 ITGGTTPDDAAAAVDVIVEELDGLG 182
>gi|448316268|ref|ZP_21505884.1| transcription factor [Natronococcus jeotgali DSM 18795]
gi|445608768|gb|ELY62595.1| transcription factor [Natronococcus jeotgali DSM 18795]
Length = 186
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+VG+ S+ LDL + + YNP +F GL+ + NP+ T L F+SGK++
Sbjct: 8 LSVENVVGSTSLEQELDLESLADDLDRVSYNPDQFPGLVSRTTNPKATSLIFRSGKVVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GA D + L++LG + G + N+V + D+ + L+A+ + +
Sbjct: 68 GASSVEDLTESVELTLDKLRELGLQVPADPGVTLQNMVTSGDLGTRLNLNAIAIGLGLEA 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE FPGL+YR V+L+F +G++VITG S+ +A +++
Sbjct: 128 VEYEPEQFPGLVYRPDDLDAVVLLFGSGKLVITGGTQHSDAEDAIESV 175
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QNMV + +G L+LN I + EY P +F GL+ + + L F SGKL+I G
Sbjct: 102 QNMVTSGDLGTRLNLNAIAIGLGLEAVEYEPEQFPGLVYRPDDLDAVVLLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
D + A L LG
Sbjct: 162 GTQHSDAEDAIESVQMRLTDLG 183
>gi|448322383|ref|ZP_21511854.1| transcription factor [Natronococcus amylolyticus DSM 10524]
gi|445601591|gb|ELY55578.1| transcription factor [Natronococcus amylolyticus DSM 10524]
Length = 186
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 100/176 (56%), Gaps = 4/176 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + S+G LDL + + ++Y+P F GL+ + +P++ L F+SGK++
Sbjct: 8 IEIENVVASSSIGQELDLQSLAMDLEGADYDPENFPGLVYRTTDPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKI--HNIVCTCDVRFPVKLDALH-HVHSQ 117
GAK + + + + L+ L +K +G +I NIV + D+ + L+A+ + +
Sbjct: 68 GAKSIENVHESLKIVFEELRDLQIEVK-EGPEIVVQNIVSSADLGRNLNLNAIAIGLGLE 126
Query: 118 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P VV L+F +G++V+TG K + +A D I L+
Sbjct: 127 NIEYEPEQFPGLVYRLDEPNVVALLFGSGKLVVTGGKEVDDARQAIDVIVERLEDL 182
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I N+V + + + L +L + + + Y+PE FPGL+YR P+ LIF +G+IV
Sbjct: 8 IEIENVVASSSIGQELDLQSLA-MDLEGADYDPENFPGLVYRTTDPKSAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TGAKS +HE+ ++ L+ +
Sbjct: 67 TGAKSIENVHESLKIVFEELRDLQ 90
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGKL++ G
Sbjct: 102 QNIVSSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPNVVALLFGSGKLVVTG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D + A + L+ LG
Sbjct: 162 GKEVDDARQAIDVIVERLEDLG 183
>gi|440300791|gb|ELP93238.1| TATA-box-binding protein, putative [Entamoeba invadens IP1]
Length = 201
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 96/173 (55%), Gaps = 22/173 (12%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V T + LDL QI + I + ++T L ++GK++ G +
Sbjct: 45 NVVSTFQLNQQLDLRQI----------------VKSAISSLKSTALILKTGKIVCTGTRS 88
Query: 65 EHDCKLASRKFAKILKQLGH-PIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
+ K+A AK +K++G+ +++ F +H I +CD++F + L L+ ++ YEP
Sbjct: 89 IEESKIA----AKTIKKIGYNEVRFSNFNVHTIR-SCDIKFQISLRPLYDSNTDMCQYEP 143
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
E+FP L++R +P+V LL+F G++V+TGAK L+ A+ I P+L + KK+
Sbjct: 144 EVFPVLVFRTTQPKVTLLVFSTGKVVLTGAKDDENLNTAYTKICPILLANKKE 196
>gi|45387857|ref|NP_991285.1| TATA box-binding protein-like protein 1 [Danio rerio]
gi|33323633|gb|AAQ07595.1|AF503448_1 TBP-like factor [Danio rerio]
Length = 186
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 89/171 (52%), Gaps = 2/171 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V C L+L I Y P + ++MK+ PR T + SGK++ GA
Sbjct: 15 NVVSVFRTRCHLNLRTIGLEGTNVIYKP-EVGKVLMKLRKPRITASIWSSGKIICTGATS 73
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
E + KL SR+ A+ L+++G +++ FK+ N++ C + F ++L + +SYEPE
Sbjct: 74 EEEAKLGSRRLARCLQKMGFKVRFSDFKVVNVLAVCSMPFQIRLIEFTKNNRPIASYEPE 133
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
L P YR+ R + +F G I +TG +S + A + IYP+L +K
Sbjct: 134 LHPAASYRIKNLRSTVQVFSTGNITVTGPNVQS-VASAVEEIYPLLFECRK 183
>gi|222481033|ref|YP_002567270.1| transcription factor [Halorubrum lacusprofundi ATCC 49239]
gi|222453935|gb|ACM58200.1| TATA-box binding family protein [Halorubrum lacusprofundi ATCC
49239]
Length = 185
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 11 ENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGAN 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA------LHHVHSQ 117
+ L+ L PI + NIV + D+ + L+A L H+
Sbjct: 71 SIDAVHESLAIVFDELRGLQIPIDDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIE-- 128
Query: 118 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P VV L+F +G++VITG S + A D I L
Sbjct: 129 ---YEPEQFPGLVYRIDEPDVVALLFGSGKLVITGGTSPDDAAAAVDVIVEKLDGL 181
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ I N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+I
Sbjct: 6 ETITIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKI 64
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFK 174
V TGA S +HE+ ++ L+ +
Sbjct: 65 VCTGANSIDAVHESLAIVFDELRGLQ 90
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + + EY P +F GL+ +I P L F SGKL+
Sbjct: 98 ITVQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLVYRIDEPDVVALLFGSGKLV 157
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
I G D A + L LG
Sbjct: 158 ITGGTSPDDAAAAVDVIVEKLDGLG 182
>gi|335441192|ref|ZP_08561913.1| transcription factor [Halorhabdus tiamatea SARL4B]
gi|334888363|gb|EGM26662.1| transcription factor [Halorhabdus tiamatea SARL4B]
Length = 186
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 94/175 (53%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + P++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + + L+ L + + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHESLQIVFGKLRDLNIQVDEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P VV L+F +G++VITG K + +A D I L+
Sbjct: 128 IEYEPEQFPGLVYRLDDPDVVALLFGSGKLVITGGKEPDDAKKAVDKIVSRLEEL 182
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ I N+V + + + L ++ + + + Y+PE FPGL+YR +P+ LIF +G+I
Sbjct: 6 ETINIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKI 64
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFKKQ 176
V TGAKS ++HE+ ++ L+ Q
Sbjct: 65 VCTGAKSTDDVHESLQIVFGKLRDLNIQ 92
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ +P L F SGKL+I G
Sbjct: 102 QNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPDVVALLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D K A K L++LG
Sbjct: 162 GKEPDDAKKAVDKIVSRLEELG 183
>gi|399576129|ref|ZP_10769886.1| transcription factor [Halogranum salarium B-1]
gi|399238840|gb|EJN59767.1| transcription factor [Halogranum salarium B-1]
Length = 186
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + +G LDL + + ++Y+P +F GL+ + NP++ L F+SGK++
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK D + L++L ++ + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDDVHESLNIVFDKLRELKIQVEDDPEITVQNIVTSADLGKNLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P+VV L+F +G++VITG K + A + I L
Sbjct: 128 IEYEPEQFPGLVYRLDEPKVVALLFGSGKLVITGGKKPEDAKHAVEVITERLSEL 182
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+IV
Sbjct: 8 INIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFKKQ 176
TGAKS ++HE+ + ++ L+ K Q
Sbjct: 67 TGAKSTDDVHESLNIVFDKLRELKIQ 92
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ P+ L F SGKL+I G
Sbjct: 102 QNIVTSADLGKNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPKVVALLFGSGKLVITG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D K A + L +LG
Sbjct: 162 GKKPEDAKHAVEVITERLSELG 183
>gi|448475876|ref|ZP_21603231.1| transcription factor [Halorubrum aidingense JCM 13560]
gi|445816094|gb|EMA66003.1| transcription factor [Halorubrum aidingense JCM 13560]
Length = 185
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + +G LDL + + ++Y+P +F GL+ + +P++ L F+SGK++ GA
Sbjct: 11 ENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGAS 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDA------LHHVHSQ 117
+ L+ L PI + NIV + D+ + L+A L H+
Sbjct: 71 SIDAVHESLAIVFDELRALQIPIDDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIE-- 128
Query: 118 FSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P VV L+F +G++V+TG + + A D I L
Sbjct: 129 ---YEPEQFPGLVYRLDEPDVVALLFGSGKLVVTGGTTPDDAAAAVDVIVEELTGL 181
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ I N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+I
Sbjct: 6 ETITIENVVASTGIGQELDLQSVA-MDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKI 64
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFK 174
V TGA S +HE+ ++ L++ +
Sbjct: 65 VCTGASSIDAVHESLAIVFDELRALQ 90
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + + EY P +F GL+ ++ P L F SGKL+
Sbjct: 98 ITVQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLVYRLDEPDVVALLFGSGKLV 157
Query: 59 ILGAKHEHDCKLASRKFAKILKQLG 83
+ G D A + L LG
Sbjct: 158 VTGGTTPDDAAAAVDVIVEELTGLG 182
>gi|407462989|ref|YP_006774306.1| TATA-box binding family protein [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046611|gb|AFS81364.1| TATA-box binding family protein [Candidatus Nitrosopumilus
koreensis AR1]
Length = 192
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 93/169 (55%), Gaps = 2/169 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V + ++ LDL I + + EY+P +F G + ++ P+T L F SG ++ GAK
Sbjct: 12 NVVASATIEQKLDLVDITKKFPHVEYHPEQFPGAVFRLQEPKTATLLFGSGNMVCTGAKS 71
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E A + L++ IK + I NIV + ++ V L+ + S YEP
Sbjct: 72 EEMAIQAVNTVVRKLRKGRIKIKKEPKVTIQNIVSSINLGGKVNLEQAARTLPR-SMYEP 130
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
E FPGLI+RM+ P+ V+LIF +G++V GAK E+H + + I+ +L+
Sbjct: 131 EQFPGLIHRMLDPKTVILIFASGKLVCVGAKLEKEIHRSVNQIHSLLEE 179
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V +I++G ++L Q + S Y P +F GLI ++L+P+T L F SGKL+ +GAK
Sbjct: 102 QNIVSSINLGGKVNLEQAARTLPRSMYEPEQFPGLIHRMLDPKTVILIFASGKLVCVGAK 161
Query: 64 HEHD 67
E +
Sbjct: 162 LEKE 165
>gi|324505039|gb|ADY42170.1| TATA box-binding protein-like protein 2 [Ascaris suum]
Length = 512
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 105/179 (58%), Gaps = 7/179 (3%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKI-LNPRTTCLAFQSGKLLI 59
+ +N+V T ++ +DL+++ ++ G+ G+++K NP + SGK+ I
Sbjct: 266 IQIRNVVCTYTLPLHIDLHRVALNCGNVTFDRGR--GVLLKQKRNPLCYVKVYSSGKIYI 323
Query: 60 LGAKHEHDCKLASRKFAKIL-KQLGHP---IKYQGFKIHNIVCTCDVRFPVKLDALHHVH 115
+G + E +CK A+R A+++ K +G ++ + ++I N++ TC + F +K++ + +
Sbjct: 324 VGCRSEAECKRAARGVARMVQKSMGKQADVVRIRNYRICNVLATCKMPFGIKIEEMAQKY 383
Query: 116 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
+ S YEPEL GL++R V P+ L I G I +TGA S +++ +A + IYP+L+ F+
Sbjct: 384 PENSDYEPELSVGLVWRSVDPKATLRIHTTGSITVTGALSEADVMKAIEVIYPILREFR 442
>gi|324509203|gb|ADY43873.1| TATA box-binding protein-like protein 2 [Ascaris suum]
Length = 438
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 105/179 (58%), Gaps = 7/179 (3%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKI-LNPRTTCLAFQSGKLLI 59
+ +N+V T ++ +DL+++ ++ G+ G+++K NP + SGK+ I
Sbjct: 192 IQIRNVVCTYTLPLHIDLHRVALNCGNVTFDRGR--GVLLKQKRNPLCYVKVYSSGKIYI 249
Query: 60 LGAKHEHDCKLASRKFAKIL-KQLGHP---IKYQGFKIHNIVCTCDVRFPVKLDALHHVH 115
+G + E +CK A+R A+++ K +G ++ + ++I N++ TC + F +K++ + +
Sbjct: 250 VGCRSEAECKRAARGVARMVQKSMGKQADVVRIRNYRICNVLATCKMPFGIKIEEMAQKY 309
Query: 116 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
+ S YEPEL GL++R V P+ L I G I +TGA S +++ +A + IYP+L+ F+
Sbjct: 310 PENSDYEPELSVGLVWRSVDPKATLRIHTTGSITVTGALSEADVMKAIEVIYPILREFR 368
>gi|433591131|ref|YP_007280627.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|448334667|ref|ZP_21523835.1| transcription factor [Natrinema pellirubrum DSM 15624]
gi|433305911|gb|AGB31723.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|445619396|gb|ELY72936.1| transcription factor [Natrinema pellirubrum DSM 15624]
Length = 186
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 98/175 (56%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ +N+V + S+G L+L + ++ ++Y+P +F GL+ + NP++ L F+SGK++
Sbjct: 8 INIENVVASTSIGQELELESVAMDLKGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPI-KYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GAK + L++L + K + NIV + D+ + L+A+ + +
Sbjct: 68 GAKSTDAVHESLHIVFDKLRELQIQVEKNPEIIVQNIVSSADLGRTLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P VV L+F +G++V+TG K + +A D I L+
Sbjct: 128 IEYEPEQFPGLVYRLDQPEVVALLFGSGKLVVTGGKKGDDAKQAVDVITTRLEEL 182
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ I N+V + + ++L+++ + + + Y+PE FPGL+YR P+ LIF +G+I
Sbjct: 6 ESINIENVVASTSIGQELELESVA-MDLKGADYDPEQFPGLVYRTQNPKSAALIFRSGKI 64
Query: 149 VITGAKSRSELHEAFDNIYPVLKSFKKQ 176
V TGAKS +HE+ ++ L+ + Q
Sbjct: 65 VCTGAKSTDAVHESLHIVFDKLRELQIQ 92
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ ++ P L F SGKL++ G
Sbjct: 102 QNIVSSADLGRTLNLNAIAIGLGLENIEYEPEQFPGLVYRLDQPEVVALLFGSGKLVVTG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D K A L++LG
Sbjct: 162 GKKGDDAKQAVDVITTRLEELG 183
>gi|395646355|ref|ZP_10434215.1| TATA-box-binding protein [Methanofollis liminatans DSM 4140]
gi|395443095|gb|EJG07852.1| TATA-box-binding protein [Methanofollis liminatans DSM 4140]
Length = 186
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 99/182 (54%), Gaps = 16/182 (8%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + V LDL I+SR++ ++YN +F G+++++ +P+ L F SGK+++
Sbjct: 9 LKIENIVASAKVTDSLDLPAISSRIQGADYNKKRFPGVVIRMQDPKIAALVFGSGKVVLT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQG--------FKIHNIVCTCDVRFPVKLDALH 112
GAK + +K L+ LG ++ + I NIV + D+ P+ L+ +
Sbjct: 69 GAK-------SVESLSKGLEILGGKLRDLDIDIDADLTYTIQNIVTSADLGKPINLNKIA 121
Query: 113 -HVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLK 171
+ YEPE FPGL+YR+ P+VV+L+F +G+++ITG K + A I L
Sbjct: 122 IGFNLDRIEYEPEQFPGLVYRLEDPKVVVLLFGSGKLIITGGKQPGDAKLAVRKIIADLS 181
Query: 172 SF 173
+
Sbjct: 182 NL 183
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G P++LN+I + EY P +F GL+ ++ +P+ L F SGKL+I G
Sbjct: 103 QNIVTSADLGKPINLNKIAIGFNLDRIEYEPEQFPGLVYRLEDPKVVVLLFGSGKLIITG 162
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D KLA RK L LG
Sbjct: 163 GKQPGDAKLAVRKIIADLSNLG 184
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 83 GHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLI 142
G+P + KI NIV + V + L A+ Q + Y + FPG++ RM P++ L+
Sbjct: 3 GNP--EESLKIENIVASAKVTDSLDLPAISS-RIQGADYNKKRFPGVVIRMQDPKIAALV 59
Query: 143 FVNGRIVITGAKSRSELHEAFD 164
F +G++V+TGAKS L + +
Sbjct: 60 FGSGKVVLTGAKSVESLSKGLE 81
>gi|82179859|sp|Q5U385.1|TBPL1_DANRE RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor
gi|55250384|gb|AAH85661.1| TBP-like 1 [Danio rerio]
Length = 186
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 2/171 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V C L+L I Y P + ++MK+ PR T + SGK++ GA
Sbjct: 15 NVVSVFRTRCHLNLRTIGLEGTNVIYKP-EVGKVLMKLRKPRITASIWSSGKIICTGATS 73
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
E + KL +R+ A+ L+++G +++ FK+ N++ C + F ++L + +SYEPE
Sbjct: 74 EEEAKLGARRLARCLQKMGFKVRFSDFKVVNVLAVCSMPFQIRLIEFTKNNRPIASYEPE 133
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
L P YR+ R + +F G I +TG +S + A + IYP+L +K
Sbjct: 134 LHPAASYRIKNLRSTVQVFSTGNITVTGPNVQS-VASAVEEIYPLLFECRK 183
>gi|170035005|ref|XP_001845362.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|167876820|gb|EDS40203.1| TATA-box-binding protein [Culex quinquefasciatus]
Length = 429
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 88/149 (59%), Gaps = 3/149 (2%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 63
N+V + SV C L+L I + E+ + +G++ MK+ P TT + SGK+ GA
Sbjct: 268 NVVCSFSVRCHLNLRDIAQKGFNVEFR--RENGMVTMKLRRPYTTASIWSSGKITCTGAT 325
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E K+A+R++++ L++LG ++++ F+I N++ TC + + + + + + +SYEP
Sbjct: 326 SEDSAKVAARRYSRCLQKLGFNVRFRNFRIVNVLGTCSMPWGIMIVNFSEKYKKDASYEP 385
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
EL PG+ Y++ P+ L IF G I +TG
Sbjct: 386 ELHPGVTYKLYNPKATLKIFSTGSITVTG 414
>gi|240102886|ref|YP_002959195.1| TATA box-binding protein, transcription initiation factor TFIID
(tbp) [Thermococcus gammatolerans EJ3]
gi|239910440|gb|ACS33331.1| TATA box-binding protein, transcription initiation factor TFIID
(tbp) [Thermococcus gammatolerans EJ3]
Length = 182
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 98/170 (57%), Gaps = 7/170 (4%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V +I + +D+ ++ S++ +YNP F G + K+ + T L F SGKL+
Sbjct: 6 LKVENVVASIDLHGEIDVEKVASKLDSVQYNPSVFPGAVYKMESFGVTFLIFYSGKLVCT 65
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRF-PVKLDALHHVHS 116
GAK + A+ K + L+ +G +K++G ++ NIV D+ F + LD +
Sbjct: 66 GAKSVETIRKATEKLKRTLESMG--MKFKGEPEIQVQNIVAAGDLGFGTLDLDIVALTLP 123
Query: 117 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
YEPE+FPG++YR+ R+ +LIF +G++V++GA++ ++ A + +
Sbjct: 124 NVE-YEPEIFPGVVYRVRNSRMTILIFNSGKVVVSGARTEEDIRRAVEEL 172
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSS--YEPELFPGLIYRMVKPRVVLLIFVNGRI 148
K+ N+V + D+ + ++ V S+ S Y P +FPG +Y+M V LIF +G++
Sbjct: 6 LKVENVVASIDLHGEIDVE---KVASKLDSVQYNPSVFPGAVYKMESFGVTFLIFYSGKL 62
Query: 149 VITGAKSRSELHEAFDNIYPVLKSF 173
V TGAKS + +A + + L+S
Sbjct: 63 VCTGAKSVETIRKATEKLKRTLESM 87
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 1 MHYQNMVGTISVG-CPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLI 59
+ QN+V +G LDL+ + + EY P F G++ ++ N R T L F SGK+++
Sbjct: 97 IQVQNIVAAGDLGFGTLDLDIVALTLPNVEYEPEIFPGVVYRVRNSRMTILIFNSGKVVV 156
Query: 60 LGAKHEHDCKLASRKFAKILKQLG 83
GA+ E D + A + + ++ G
Sbjct: 157 SGARTEEDIRRAVEELTRDFEKYG 180
>gi|448736860|ref|ZP_21718941.1| transcription factor [Halococcus thailandensis JCM 13552]
gi|445805544|gb|EMA55752.1| transcription factor [Halococcus thailandensis JCM 13552]
Length = 203
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 92/174 (52%), Gaps = 1/174 (0%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ +DL + + ++++P +F G+I + + TCL F+SGK+
Sbjct: 26 LEVQNVVVSSTLNQEIDLKSVALDLTGADFDPEQFPGVIYRPESAEATCLIFRSGKITCT 85
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFS 119
GA + + + ++ LG ++ + NIV D+ + L+A+ + +
Sbjct: 86 GAGSIEGARETVQATVETVRGLGIDVEEPTVTVQNIVSDADLGEELNLEAIAIGLGLEDI 145
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGLIYR+ +P V+L+F G+ VITGA+++ + EA I L
Sbjct: 146 EYEPEQFPGLIYRLDEPDTVVLLFGTGKTVITGAETQDDAEEALKTIIDRLSEL 199
>gi|82471113|gb|ABB77562.1| TATA-box binding protein [Phytophthora parasitica]
Length = 104
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 62/75 (82%)
Query: 101 DVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELH 160
D+RFP++L+ L + H++FSSYEPE FPGLIY++V+P++ LLIFV+G+IV+ GA+ + LH
Sbjct: 1 DIRFPIRLEGLLNDHARFSSYEPEPFPGLIYKLVEPKLTLLIFVSGKIVLCGARDSNHLH 60
Query: 161 EAFDNIYPVLKSFKK 175
+A D +YPVL ++K
Sbjct: 61 QAIDKMYPVLLQYRK 75
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 21 INSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 80
+N R+S Y P F GLI K++ P+ T L F SGK+++ GA+ + A K +L
Sbjct: 12 LNDHARFSSYEPEPFPGLIYKLVEPKLTLLIFVSGKIVLCGARDSNHLHQAIDKMYPVLL 71
Query: 81 Q 81
Q
Sbjct: 72 Q 72
>gi|148224606|ref|NP_001083732.1| TATA box-binding protein-like protein 1 [Xenopus laevis]
gi|25091422|sp|Q9W6Z2.1|TBPL1_XENLA RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor; Short=xlTLF
gi|4689078|emb|CAB41487.1| TBP-like factor [Xenopus laevis]
gi|58702024|gb|AAH90226.1| TLF protein [Xenopus laevis]
Length = 186
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 76/131 (58%), Gaps = 1/131 (0%)
Query: 38 LIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIV 97
++MK+ PR T + SGK++ GA E + K+ +R+ A+ L++LG +K+ FK+ N++
Sbjct: 47 VLMKLRKPRITATIWSSGKIICTGATSEEEAKVGARRLARSLQKLGFQVKFTEFKVVNVL 106
Query: 98 CTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRS 157
C + F ++L+ + +SYEPEL P + YR+ R L IF G I +TG +S
Sbjct: 107 AVCTMPFEIRLNEFTKQNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPDVKS 166
Query: 158 ELHEAFDNIYP 168
+ A + IYP
Sbjct: 167 -VASAIEQIYP 176
>gi|223476888|ref|YP_002581345.1| TATA-box binding protein [Thermococcus sp. AM4]
gi|214032114|gb|EEB72945.1| TATA-box binding protein [Thermococcus sp. AM4]
Length = 182
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 99/179 (55%), Gaps = 10/179 (5%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V +I + +D+ ++ S + Y+P F G I K+ + T L F SGKL+
Sbjct: 3 LEVENVVASIDLHGKIDVERVASELDPVHYDPSVFPGAIYKMGSFGVTFLIFYSGKLVCT 62
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRF-PVKLDALHHVHS 116
GAK K A+ + + L+ +G +K++G ++ NIV D F + LD +
Sbjct: 63 GAKSVETIKRATEELKQTLESMG--MKFRGKPEIRVQNIVAAGDAGFRTLDLDTVALTLP 120
Query: 117 QFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPE+FPG++YR+ R+ +LIF +G+IV++GAK+ ++ A + + + FKK
Sbjct: 121 NVE-YEPEIFPGVVYRVKNSRITILIFNSGKIVVSGAKTEEDIQRAVNEL---ISEFKK 175
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 1 MHYQNMVGTISVGC-PLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLI 59
+ QN+V G LDL+ + + EY P F G++ ++ N R T L F SGK+++
Sbjct: 94 IRVQNIVAAGDAGFRTLDLDTVALTLPNVEYEPEIFPGVVYRVKNSRITILIFNSGKIVV 153
Query: 60 LGAKHEHDCKLASRKFAKILKQLG 83
GAK E D + A + K+ G
Sbjct: 154 SGAKTEEDIQRAVNELISEFKKYG 177
>gi|448564200|ref|ZP_21635901.1| transcription factor [Haloferax prahovense DSM 18310]
gi|445717187|gb|ELZ68908.1| transcription factor [Haloferax prahovense DSM 18310]
Length = 157
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 79/132 (59%), Gaps = 2/132 (1%)
Query: 25 VRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGH 84
V +E+NP F GL+ + NPR L F+SGK++ GA + A + + L LG
Sbjct: 3 VDGAEFNPDNFPGLVYRTQNPRAANLIFRSGKIVCTGASSVDEVNRALDQVFEELGSLGI 62
Query: 85 PIK-YQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSSYEPELFPGLIYRMVKPRVVLLI 142
PI + + NIV + D+ + L+AL + + YEPE FPGL+YR+ +P+VV+L+
Sbjct: 63 PIDDREEATVQNIVSSADLGTNLNLNALAIGLGLENVEYEPEQFPGLVYRIDEPKVVVLL 122
Query: 143 FVNGRIVITGAK 154
F +G+IVITGAK
Sbjct: 123 FGSGKIVITGAK 134
>gi|72133443|ref|XP_798726.1| PREDICTED: TATA box-binding protein-like protein 1-like
[Strongylocentrotus purpuratus]
Length = 325
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 92/174 (52%), Gaps = 2/174 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
++ N+V V C L+L +I EY ++ + M+ P T + SGK+ I
Sbjct: 100 IYINNVVCAFGVRCHLNLRRIGQYGSNVEYR-REYGKVNMRFRRPSATATIWSSGKITIT 158
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
G E K +R+ A+ L++LG ++ +K+ N++ TC + F +++ H +S
Sbjct: 159 GNDSEEHAKKNARRCARALQKLGFNVRLSKYKVVNVLGTCSMPFAIRIRDFSEKHQNSAS 218
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174
YEPEL P + Y++ +PR L IF G I +T A + + EA + IYP++++ +
Sbjct: 219 YEPELHPAVTYKLYQPRATLKIFSTGSITVT-APAVGNISEAIEFIYPLVEAHR 271
>gi|409723670|ref|ZP_11270812.1| transcription factor [Halococcus hamelinensis 100A6]
gi|448721517|ref|ZP_21704062.1| transcription factor [Halococcus hamelinensis 100A6]
gi|445791336|gb|EMA41977.1| transcription factor [Halococcus hamelinensis 100A6]
Length = 192
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 89/164 (54%), Gaps = 2/164 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++G +DL + + + +++P +F GLI +I P T L F+SGKL+
Sbjct: 14 LEIQNVVASSAIGQEIDLEALVTDLEGVDFDPEQFPGLIYRIEEPHATALIFRSGKLVCT 73
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GA A + L LG + + NIV + D+ + L+A+ + +
Sbjct: 74 GADSVDGVHEALASTFETLSNLGLRVNDNPTITVQNIVVSGDLGATLNLNAIAIGLGLEA 133
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
YEPE FPGL+YR+ +P+VV L+F +G+ VITG K + EA
Sbjct: 134 IEYEPEQFPGLVYRLEEPKVVALLFGSGKTVITGCKQFEDAEEA 177
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRI 148
+ +I N+V + + + L+AL + ++PE FPGLIYR+ +P LIF +G++
Sbjct: 12 EALEIQNVVASSAIGQEIDLEALV-TDLEGVDFDPEQFPGLIYRIEEPHATALIFRSGKL 70
Query: 149 VITGAKSRSELHEAFDNIYPVLKSF 173
V TGA S +HEA + + L +
Sbjct: 71 VCTGADSVDGVHEALASTFETLSNL 95
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 1 MHYQNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLL 58
+ QN+V + +G L+LN I + EY P +F GL+ ++ P+ L F SGK +
Sbjct: 105 ITVQNIVVSGDLGATLNLNAIAIGLGLEAIEYEPEQFPGLVYRLEEPKVVALLFGSGKTV 164
Query: 59 ILGAKHEHDCKLASRKFAKILKQL 82
I G K D + A+ L L
Sbjct: 165 ITGCKQFEDAEEATEVLVDRLSDL 188
>gi|269986164|gb|EEZ92477.1| TATA-box binding family protein [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 180
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 97/169 (57%), Gaps = 3/169 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V +IS+ + LN++ ++ ++YNP +F GL+ + + T L F SGKL+ G +
Sbjct: 10 ENVVASISLKVQIPLNKL-KKLPNTKYNPEQFPGLVFRFPDMHVTFLVFGSGKLVCTGGR 68
Query: 64 HEHDCKLASRKFAKILKQLGHPIK-YQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
+ D K A + K LK++G ++ I NIV + ++ + L+ + + + + Y
Sbjct: 69 SKEDIKTAMARLLKELKKVGVTVRSVWKIDIQNIVASGNLNRSLDLNKIAYNIDE-TEYN 127
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLK 171
PE FPGL+Y++V ++ L+F G+IV TGAK+ E+ EA + +K
Sbjct: 128 PEQFPGLVYKLVNSKITFLLFGTGKIVCTGAKNVEEIDEAIKILITAIK 176
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ QN+V + ++ LDLN+I + +EYNP +F GL+ K++N + T L F +GK++
Sbjct: 97 IDIQNIVASGNLNRSLDLNKIAYNIDETEYNPEQFPGLVYKLVNSKITFLLFGTGKIVCT 156
Query: 61 GAKHEHDCKLASRKFAKILKQ 81
GAK+ + A + +K+
Sbjct: 157 GAKNVEEIDEAIKILITAIKK 177
>gi|448335944|ref|ZP_21525067.1| transcription factor [Natrinema pellirubrum DSM 15624]
gi|448404754|ref|ZP_21572552.1| transcription factor [Haloterrigena limicola JCM 13563]
gi|445614729|gb|ELY68395.1| transcription factor [Natrinema pellirubrum DSM 15624]
gi|445663265|gb|ELZ16018.1| transcription factor [Haloterrigena limicola JCM 13563]
Length = 186
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 2/165 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + V L+L + + ++Y+ +F G + + NP++ L F+SGK++ GAK
Sbjct: 11 ENVVASTGVDRELNLEAVAEDLDGTDYDQERFPGAVYRTQNPKSAALIFRSGKIVCTGAK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSSY 121
D + L+ LG + I NIV + D+ V L+A+ + Y
Sbjct: 71 STDDVYESLNIVFDELRGLGIDVPSNPEITIQNIVSSGDLGSAVNLNAIAIGFGLENIEY 130
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
EPE FPGL+YRM P VV LIF +G++V+TGAK ++ A D I
Sbjct: 131 EPEQFPGLVYRMDDPNVVTLIFGSGKVVVTGAKEPADAGRALDVI 175
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
I N+V + V + L+A+ + Y+ E FPG +YR P+ LIF +G+IV TG
Sbjct: 10 IENVVASTGVDRELNLEAVAE-DLDGTDYDQERFPGAVYRTQNPKSAALIFRSGKIVCTG 68
Query: 153 AKSRSELHEAFDNIYPVLKSF 173
AKS +++E+ + ++ L+
Sbjct: 69 AKSTDDVYESLNIVFDELRGL 89
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G ++LN I + EY P +F GL+ ++ +P L F SGK+++ G
Sbjct: 102 QNIVSSGDLGSAVNLNAIAIGFGLENIEYEPEQFPGLVYRMDDPNVVTLIFGSGKVVVTG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
AK D A + L +LG
Sbjct: 162 AKEPADAGRALDVISSRLDELG 183
>gi|47205581|emb|CAF96147.1| unnamed protein product [Tetraodon nigroviridis]
gi|47224248|emb|CAG09094.1| unnamed protein product [Tetraodon nigroviridis]
Length = 185
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 2/172 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
N+V T C L+L I Y P + + MK+ PR T + SGK++ GA
Sbjct: 14 SNVVATFRTRCHLNLRTIALEGNNVIYKPEQ-GTVTMKLRKPRITANIWSSGKIICTGAS 72
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E + K+ +R+ A+ L++LG + + FK+ N++ TC + F + L + ++YEP
Sbjct: 73 SEDEAKMGARRLARCLQKLGFKVSFSAFKVVNVMATCAMPFKISLIDFTKRNRPIATYEP 132
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EL P +Y M P+ + +F G + I G S + A ++YP+L ++
Sbjct: 133 ELHPAAMYTMRHPKATVKVFATGSVTILG-PSVDNVAAAVQHVYPLLSECRR 183
>gi|156541942|ref|XP_001600485.1| PREDICTED: TATA box-binding protein-like protein 1 [Nasonia
vitripennis]
Length = 283
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 98/176 (55%), Gaps = 10/176 (5%)
Query: 5 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLIL 60
N+V + SV C L+L +I S V Y N GL+ M++ P T SGK+
Sbjct: 65 NVVCSFSVRCHLNLREIALNGSNVEYRREN-----GLVRMRLRKPCTLASISSSGKVTCT 119
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GA E + K A+R+ A+ L++LG +++ ++I N++ TC + + +K+ + +
Sbjct: 120 GATSEEEAKKAARRCARSLQKLGFRVRFNNYRIVNVLGTCTMPWAIKITSFSTHYKDIVQ 179
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YEPE+ PG+IY++ + L IF G I +T A S + + A ++IYP++ F+K+
Sbjct: 180 YEPEIQPGVIYKLKNMKATLRIFSTGSITVT-APSINAVQAAIEHIYPLVYEFRKE 234
>gi|433593455|ref|YP_007296196.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|433307965|gb|AGB33776.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
Length = 193
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 2/165 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + V L+L + + ++Y+ +F G + + NP++ L F+SGK++ GAK
Sbjct: 18 ENVVASTGVDRELNLEAVAEDLDGTDYDQERFPGAVYRTQNPKSAALIFRSGKIVCTGAK 77
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQFSSY 121
D + L+ LG + I NIV + D+ V L+A+ + Y
Sbjct: 78 STDDVYESLNIVFDELRGLGIDVPSNPEITIQNIVSSGDLGSAVNLNAIAIGFGLENIEY 137
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNI 166
EPE FPGL+YRM P VV LIF +G++V+TGAK ++ A D I
Sbjct: 138 EPEQFPGLVYRMDDPNVVTLIFGSGKVVVTGAKEPADAGRALDVI 182
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
I N+V + V + L+A+ + Y+ E FPG +YR P+ LIF +G+IV TG
Sbjct: 17 IENVVASTGVDRELNLEAVAE-DLDGTDYDQERFPGAVYRTQNPKSAALIFRSGKIVCTG 75
Query: 153 AKSRSELHEAFDNIYPVLKSF 173
AKS +++E+ + ++ L+
Sbjct: 76 AKSTDDVYESLNIVFDELRGL 96
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQI--NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G ++LN I + EY P +F GL+ ++ +P L F SGK+++ G
Sbjct: 109 QNIVSSGDLGSAVNLNAIAIGFGLENIEYEPEQFPGLVYRMDDPNVVTLIFGSGKVVVTG 168
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
AK D A + L +LG
Sbjct: 169 AKEPADAGRALDVISSRLDELG 190
>gi|435846586|ref|YP_007308836.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronococcus occultus SP4]
gi|433672854|gb|AGB37046.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronococcus occultus SP4]
Length = 185
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 89/171 (52%), Gaps = 1/171 (0%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V + G DL + + ++Y+P F G++ +I P++ L F +GK++ G+K
Sbjct: 11 ENVVASGDTGREFDLQTLAEDLDNAQYDPKTFPGIVYRIDEPKSAGLIFHTGKVVCTGSK 70
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSSYE 122
D + ++LG I+ F + NIV + D+ + + L+A+ + YE
Sbjct: 71 SVEDINKSVESIFNAFERLGISIEENPFTVQNIVSSADLGYSLNLNAVAVGLGLGQIEYE 130
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
PE FPGL+YR+ +P VV L+F +G+ VITG + A + I L+
Sbjct: 131 PEQFPGLVYRLDEPDVVALLFGSGKTVITGGTEVQDATNAVNVIASKLEDL 181
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
I N+V + D L L + Y+P+ FPG++YR+ +P+ LIF G++V TG
Sbjct: 10 IENVVASGDTGREFDLQTLAEDLDN-AQYDPKTFPGIVYRIDEPKSAGLIFHTGKVVCTG 68
Query: 153 AKSRSELHEAFDNIY 167
+KS +++++ ++I+
Sbjct: 69 SKSVEDINKSVESIF 83
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN + + EY P +F GL+ ++ P L F SGK +I G
Sbjct: 101 QNIVSSADLGYSLNLNAVAVGLGLGQIEYEPEQFPGLVYRLDEPDVVALLFGSGKTVITG 160
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
D A A L+ LG
Sbjct: 161 GTEVQDATNAVNVIASKLEDLG 182
>gi|248883|gb|AAB22100.1| transcription factor IID, TFIID [Saccharomyces cerevisiae=yeast,
Peptide Partial Mutant, 61 aa]
Length = 61
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 94 HNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGA 153
NIV +CDV+FP++L+ L H FSSYEPELFPGLIYRMVKP++VL IFV+G+IV+TGA
Sbjct: 1 QNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLFIFVSGKIVLTGA 60
Query: 154 K 154
K
Sbjct: 61 K 61
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 4 QNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + S +S Y P F GLI +++ P+ F SGK+++ GA
Sbjct: 1 QNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLFIFVSGKIVLTGA 60
Query: 63 K 63
K
Sbjct: 61 K 61
>gi|158288977|ref|XP_310781.4| AGAP000335-PA [Anopheles gambiae str. PEST]
Length = 231
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 94/170 (55%), Gaps = 3/170 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLI-MKILNPRTTCLAFQSGKLLILGAK 63
N+V + SV C L+L I E+ + +G++ MK+ P TT + SGK+ GA
Sbjct: 61 NVVCSFSVRCHLNLRDIALYGDNVEFR--RENGMVTMKLRRPYTTASIWSSGKITCTGAT 118
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E K+A+R++++ L++LG ++ + F+I N++ TC + + +K+ + + +SYEP
Sbjct: 119 SEDQAKVAARRYSRCLQKLGFNVRLRNFRIVNVLGTCAMPWGIKIVNFSEKYKKDASYEP 178
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
EL PG+ Y++ PR L IF G I +TG R + + I L+ F
Sbjct: 179 ELHPGVTYKLHSPRATLKIFSTGSITVTGKCVRRKGEAMWVQIAARLQFF 228
>gi|219851944|ref|YP_002466376.1| transcription factor [Methanosphaerula palustris E1-9c]
gi|219546203|gb|ACL16653.1| TATA-box binding family protein [Methanosphaerula palustris E1-9c]
Length = 186
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 94/178 (52%), Gaps = 8/178 (4%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + V LDL I S++ +EY+ +F G++++I +P+ L F SGK+++
Sbjct: 9 LKIENIVASAKVTDHLDLPAIASQLEGAEYDKKRFPGVVIRIKDPKIAALVFNSGKVVLT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIK-YQGFKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
GAK + +L+ +G I + + NIV + D+ + L + + F+
Sbjct: 69 GAKSIDILDRGIALLSDMLRAIGVEIDGTPTYTVQNIVTSADLGSTINL---NKIAVGFN 125
Query: 120 ----SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ P+VVLL+F +G+++ITG K + A I L
Sbjct: 126 LNKIEYEPEQFPGLVYRLDDPKVVLLLFGSGKMIITGGKHTVDAERAVQRIMSDLTGL 183
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G ++LN+I + EY P +F GL+ ++ +P+ L F SGK++I G
Sbjct: 103 QNIVTSADLGSTINLNKIAVGFNLNKIEYEPEQFPGLVYRLDDPKVVLLLFGSGKMIITG 162
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
KH D + A ++ L LG
Sbjct: 163 GKHTVDAERAVQRIMSDLTGLG 184
>gi|379335155|gb|AFD03144.1| 2-alkenal reductase [uncultured bacterium W5-77b]
Length = 186
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 98/173 (56%), Gaps = 2/173 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + ++ LDL I + E++P F G + ++ NP+T L F++GK++
Sbjct: 8 ISIENVVASATIDQKLDLKDITMKFPDVEWHPDMFPGAVFRLKNPKTATLLFRTGKMVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQG-FKIHNIVCTCDVRFPVKLDALHHVHSQFS 119
G+K E + A + + L++ IK + I NIV + ++ V L+ + S
Sbjct: 68 GSKSEEIARKAVKTVVQELRKGKIKIKKEATVTIQNIVASINLGGRVHLEQAARTLPR-S 126
Query: 120 SYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
YEPE FPGLI+R++ P+ V+LIF +G++V TG K+ ++ + + ++ +L+
Sbjct: 127 MYEPEQFPGLIHRVLDPKTVILIFSSGKLVCTGGKTEKDVFRSVNQLHNLLEE 179
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYE--PELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + KLD L + +F E P++FPG ++R+ P+ L+F G++V
Sbjct: 10 IENVVASATID--QKLD-LKDITMKFPDVEWHPDMFPGAVFRLKNPKTATLLFRTGKMVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFK 174
TG+KS +A + L+ K
Sbjct: 67 TGSKSEEIARKAVKTVVQELRKGK 90
>gi|52345772|ref|NP_001004932.1| TATA box-binding protein-like protein 1 [Xenopus (Silurana)
tropicalis]
gi|82183480|sp|Q6DIY4.1|TBPL1_XENTR RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor
gi|49522390|gb|AAH75401.1| TBP-like 1 [Xenopus (Silurana) tropicalis]
gi|89272095|emb|CAJ81743.1| TBP-like 1 [Xenopus (Silurana) tropicalis]
Length = 186
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 75/131 (57%), Gaps = 1/131 (0%)
Query: 38 LIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIV 97
++MK+ PR T + SGK++ GA E + K+ +R+ A+ L++LG +K+ FK+ N++
Sbjct: 47 VLMKLRKPRITATIWSSGKIICTGATSEEEAKVGARRLARSLQKLGFQVKFTEFKVVNVL 106
Query: 98 CTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRS 157
C + F ++L + +SYEPEL P + YR+ R L IF G I +TG +S
Sbjct: 107 AVCTMPFEIRLAEFTKQNRPHASYEPELHPAVCYRIKSLRTTLQIFSTGSITVTGPDVKS 166
Query: 158 ELHEAFDNIYP 168
+ A + IYP
Sbjct: 167 -VATAIEQIYP 176
>gi|20094275|ref|NP_614122.1| transcription factor [Methanopyrus kandleri AV19]
gi|24638238|sp|Q8TX38.1|TBP_METKA RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|19887315|gb|AAM02052.1| Transcription initiation factor TFIID (TATA-binding protein)
[Methanopyrus kandleri AV19]
Length = 185
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 99/182 (54%), Gaps = 12/182 (6%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
M QN+V ++ + ++L++ S + EY P +F GL+ ++ + T L F+SGK++
Sbjct: 1 MEIQNIVASVDLKGEVNLDEC-SVILQGEYEPEQFPGLVYRLEDIGTVVLIFRSGKMVCT 59
Query: 61 GAKH-EHDCKLASRKFAKILKQLGHPIKYQG---FKIHNIVCTCDVRFPVKLDALHHV-- 114
GAK+ E K R + K+ G +K+ G +I NIV + D P+ LD + V
Sbjct: 60 GAKNREQIYKSVERVREDLEKKCG--VKFHGEPEVEIQNIVASIDFHVPLDLDTIAEVLV 117
Query: 115 ---HSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLK 171
+ YEPE FPGL+ R+ +P+V +L+F +G+ V TGAK+ E +A I ++
Sbjct: 118 GDEDVEGIEYEPEQFPGLVLRLREPKVAMLLFYSGKAVCTGAKTEEEPEKAVKKIAEKIE 177
Query: 172 SF 173
+
Sbjct: 178 KY 179
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 1 MHYQNMVGTISVGCPLDLNQI------NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQS 54
+ QN+V +I PLDL+ I + V EY P +F GL++++ P+ L F S
Sbjct: 92 VEIQNIVASIDFHVPLDLDTIAEVLVGDEDVEGIEYEPEQFPGLVLRLREPKVAMLLFYS 151
Query: 55 GKLLILGAKHEHDCKLASRKFAKILKQLG 83
GK + GAK E + + A +K A+ +++ G
Sbjct: 152 GKAVCTGAKTEEEPEKAVKKIAEKIEKYG 180
>gi|134045653|ref|YP_001097139.1| transcription factor [Methanococcus maripaludis C5]
gi|132663278|gb|ABO34924.1| TATA-box binding protein [Methanococcus maripaludis C5]
Length = 174
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 4/159 (2%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+VG+ + P++L +I + SEY+P ++H + ++ + F+SGKL G+K
Sbjct: 10 NVVGSCDLKTPMNLEKIYPLIENSEYDPERYHCIYIRTPGIKRLVTIFKSGKLNTAGSKS 69
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQF-SSYEP 123
+ K A + L +LG K KI+NIV ++ F K D L + F + YEP
Sbjct: 70 IEEAKSAVLEIVDKLNELGFTDKRPEVKIYNIV--ANISFNKKFD-LEEISENFGAEYEP 126
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
E FPG++ ++ P+ LIF +G+IVI G KS EL A
Sbjct: 127 EQFPGVVLKINDPKATFLIFKSGKIVINGVKSNEELENA 165
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V IS DL +I+ +EY P +F G+++KI +P+ T L F+SGK++I G K
Sbjct: 100 NIVANISFNKKFDLEEISENFG-AEYEPEQFPGVVLKINDPKATFLIFKSGKIVINGVKS 158
Query: 65 EHDCKLASR 73
+ + A R
Sbjct: 159 NEELENAVR 167
Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 93 IHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
I N+V +CD++ P+ L+ ++ + S Y+PE + + R + ++ IF +G++ G
Sbjct: 8 IVNVVGSCDLKTPMNLEKIYPLIEN-SEYDPERYHCIYIRTPGIKRLVTIFKSGKLNTAG 66
Query: 153 AKSRSELHEA 162
+KS E A
Sbjct: 67 SKSIEEAKSA 76
>gi|145518309|ref|XP_001445032.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412465|emb|CAK77635.1| unnamed protein product [Paramecium tetraurelia]
Length = 180
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 89/150 (59%), Gaps = 3/150 (2%)
Query: 16 LDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKF 75
LDL+ + + EY +F LI +I +P++T L F++GK++I G K +++ + A+ KF
Sbjct: 12 LDLDNLAHTSQNCEYKKSRFPALIQRIKDPKSTALIFEAGKMVITGTKGQNEAEEAANKF 71
Query: 76 AKILKQLGH-PIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS-QFS-SYEPELFPGLIYR 132
K +++ I+ + NIV + + V L ++ S Q S SY+ FPGLIY+
Sbjct: 72 KKQIEKNNRISIQIGDIQTSNIVANSQLPYEVNLMKINDDRSLQGSISYDRSAFPGLIYK 131
Query: 133 MVKPRVVLLIFVNGRIVITGAKSRSELHEA 162
M P++ LIF +G+IV TGAK+ +++ +A
Sbjct: 132 MQNPKLAALIFYSGKIVFTGAKNETQIKDA 161
>gi|448447570|ref|ZP_21591133.1| transcription factor [Halorubrum litoreum JCM 13561]
gi|445815482|gb|EMA65406.1| transcription factor [Halorubrum litoreum JCM 13561]
Length = 168
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 5/166 (3%)
Query: 16 LDLNQINSRVR--YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASR 73
LD+ ++ S + Y+EY+P +HGL ++++ ++SGK +I G +
Sbjct: 3 LDVAEVESDLDLPYTEYDPSNYHGLYLRLVEGGPLITVYRSGKYIISGCSTFEQLYETND 62
Query: 74 KFAKILKQLG--HPIKYQGFKIHNIVCTCDVRFPVKLDALH-HVHSQFSSYEPELFPGLI 130
F L +L GF + N+VCT + PV L+ L + + YEPE FPGLI
Sbjct: 63 AFLTTLSELDIVDAETETGFTVQNVVCTAQLDDPVDLNTLSIALGLESVEYEPEQFPGLI 122
Query: 131 YRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
YR VLL+F NG+IVITGA +AF ++ + ++ +Q
Sbjct: 123 YRPADHPAVLLVFANGKIVITGASDVDTAEDAFKHLQKQVTTYLEQ 168
Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 4 QNMVGTISVGCPLDLNQINSR--VRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V T + P+DLN ++ + EY P +F GLI + + L F +GK++I G
Sbjct: 85 QNVVCTAQLDDPVDLNTLSIALGLESVEYEPEQFPGLIYRPADHPAVLLVFANGKIVITG 144
Query: 62 AKHEHDCKLASRKFAKILKQL 82
A D A F + KQ+
Sbjct: 145 AS---DVDTAEDAFKHLQKQV 162
>gi|124485267|ref|YP_001029883.1| transcription factor [Methanocorpusculum labreanum Z]
gi|124362808|gb|ABN06616.1| TATA-box binding protein [Methanocorpusculum labreanum Z]
Length = 188
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 2/174 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + + +DL +I+ ++ E N +F G + +I +P+ L F SGK+++
Sbjct: 9 LKIENIVASGVIAEEIDLAEISEKIDGCELNTKRFPGAVYRIDSPKMASLIFSSGKVVLT 68
Query: 61 GAKHEHDCKLASRKFAKILKQLG-HPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHS-QF 118
G ++E K LK+ G + + + NIVC+ D+ + L+ + S +
Sbjct: 69 GIRNEESLGEGLAKVLASLKEAGVNVLDVPRVAVTNIVCSYDIGRFINLNRVVATLSLEA 128
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172
YEPE FPGL+YR+ P++V L+F +G+I++TG K+ ++ + D + LK
Sbjct: 129 IEYEPEQFPGLVYRIKDPKIVALLFSSGKIILTGGKNLDDVRKGLDFLEESLKD 182
>gi|328719261|ref|XP_003246709.1| PREDICTED: TATA box-binding protein-like protein 1-like isoform 1
[Acyrthosiphon pisum]
gi|328719263|ref|XP_003246710.1| PREDICTED: TATA box-binding protein-like protein 1-like isoform 2
[Acyrthosiphon pisum]
Length = 288
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 85/138 (61%), Gaps = 2/138 (1%)
Query: 38 LIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNI 96
L+MK+ P T + + SGK++ +G+ E+D K+AS++ A+I+++LG+ K+ FKI N+
Sbjct: 90 LVMKLRKPSATAIIWSSGKIVCIGSASEYDSKIASKRIARIIQRLGYSDAKFSSFKIINV 149
Query: 97 VCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSR 156
+ +C + F +++ + S YEPEL PG+ YR+ + + L I+ G I + A S
Sbjct: 150 LGSCSLPFSIRIIQFSEKYKLNSQYEPELNPGVTYRIKEFKATLKIYSTGSITV-NASSE 208
Query: 157 SELHEAFDNIYPVLKSFK 174
+ + A ++IYP++ FK
Sbjct: 209 AIVQLAIEHIYPLVLPFK 226
>gi|432945913|ref|XP_004083749.1| PREDICTED: TATA box-binding protein-like protein 1-like [Oryzias
latipes]
Length = 187
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 89/171 (52%), Gaps = 2/171 (1%)
Query: 5 NMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKH 64
N+V T C L+L I Y P + ++MK+ PR T + SGK++ GA
Sbjct: 15 NVVATFRTRCHLNLRTIALEGINVIYKP-EVGKVLMKLRKPRITASIWSSGKIICTGATS 73
Query: 65 EHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124
E + KL +R+ A+ L++LG +++ FK+ N++ C + F + L + +SYEPE
Sbjct: 74 EDEAKLGARRLARCLQKLGFKVRFSAFKVVNVLAVCSMPFSIHLVDFTKNNRPIASYEPE 133
Query: 125 LFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
L P YR+ + + +F G + ITG ++ + A + +YP+L +K
Sbjct: 134 LHPAATYRIKNIKATVQVFSTGSLTITGPNVQN-VATAVEQVYPLLFECRK 183
>gi|355748887|gb|EHH53370.1| hypothetical protein EGM_14000, partial [Macaca fascicularis]
Length = 186
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 8/175 (4%)
Query: 5 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKIICTG 70
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
A E + K +R+ A+ L++LG + + FK+ N++ C++ F ++L + +SY
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKTNRPHASY 130
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPEL P + YR+ R L IF G I +TG ++ + A + IYP + +K+
Sbjct: 131 EPELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKA-VATAVEQIYPFVFESRKE 184
>gi|12653225|gb|AAH00381.1| TBP-like 1 [Homo sapiens]
gi|167774053|gb|ABZ92461.1| TBP-like 1 [synthetic construct]
Length = 186
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 8/175 (4%)
Query: 5 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DAGK---VLMKLRKPRITATIWSSGKIICTG 70
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
A E + K +R+ A+ L++LG + + FK+ N++ C++ F ++L + +SY
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASY 130
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPEL P + YR+ R L IF G I +TG ++ + A + IYP + +K+
Sbjct: 131 EPELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKA-VATAVEQIYPFVFESRKE 184
>gi|449545513|gb|EMD36484.1| hypothetical protein CERSUDRAFT_95784 [Ceriporiopsis subvermispora
B]
Length = 154
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 81/148 (54%), Gaps = 28/148 (18%)
Query: 40 MKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCT 99
M++ + + L F SGKL++ GAK E + LASRK A+I+++L + KI N + +
Sbjct: 1 MRVCDLKMAVLIFVSGKLVVTGAKSEDNTCLASRKSARIVQKLEFDPNFSELKIQNTMGS 60
Query: 100 CDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAK----- 154
D FSS+EPELFPGL Y M+KP+VVLLIF++ +V+T AK
Sbjct: 61 RD----------------FSSFEPELFPGLTYSMIKPKVVLLIFMSRMVVLTRAKVHIFY 104
Query: 155 -------SRSELHEAFDNIYPVLKSFKK 175
R E++ A IY VL F++
Sbjct: 105 YWEASSPGREEIYTALTTIYTVLYEFQE 132
>gi|149722967|ref|XP_001504421.1| PREDICTED: TATA box-binding protein-like protein 1-like [Equus
caballus]
Length = 186
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 8/175 (4%)
Query: 5 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKIICTG 70
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
A E + K +R+ A+ L++LG + + FK+ N++ C++ F ++L + +SY
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASY 130
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPEL P + YR+ R L IF G I +TG ++ + A + IYP + +K+
Sbjct: 131 EPELHPAVCYRIKSLRATLQIFSTGSITVTGTNVKA-VATAVEQIYPFVFESRKE 184
>gi|47224247|emb|CAG09093.1| unnamed protein product [Tetraodon nigroviridis]
Length = 185
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 2/172 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
N+V T GC L+L I + P + + M++ PR T + SGK++ GA
Sbjct: 14 SNVVATFRTGCHLNLYAIACNGHNVIHRPER-GTVTMQLRKPRVTANIWSSGKVICTGAT 72
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E + K+ +R+ A+ +++L P+ + FK+ N++ T + F + L + + YEP
Sbjct: 73 SEQEAKMGARRIARCVQKLNFPVSFSAFKVVNVMVTSAMPFKISLIDFTKRNRPVTRYEP 132
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
EL P +Y M P+ + +F G + I G S + + A NIYP+L + ++
Sbjct: 133 ELHPAAMYTMRHPKATVRVFATGSVTIFG-PSVANVTVAIQNIYPLLSACRR 183
>gi|417396717|gb|JAA45392.1| Putative tata-box binding protein tbp component of tfiid and tfiiib
[Desmodus rotundus]
Length = 186
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 8/175 (4%)
Query: 5 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKIICTG 70
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
A E + K +R+ A+ L++LG + + FK+ N++ C++ F ++L + +SY
Sbjct: 71 ATSEEEAKFGARRLARCLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASY 130
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPEL P + YR+ R L IF G I +TG ++ + A + IYP + +K+
Sbjct: 131 EPELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKA-VATAVEQIYPFVFESRKE 184
>gi|268566091|ref|XP_002639632.1| C. briggsae CBR-TLF-1 protein [Caenorhabditis briggsae]
Length = 512
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 37 GLIMKI-LNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAK----ILKQLGHPIKYQGF 91
G++MK NP + SGK+ I+G + E DC+ A+R A+ ++ + + + +
Sbjct: 306 GVMMKQKRNPGCYIKVYSSGKVYIVGCRSEDDCRRAARSIARHVQRVMGKTKEKVSIRNY 365
Query: 92 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
+++N++ TC + F +K++ + + S+YEPEL GL++R P+ L I G I +T
Sbjct: 366 RVNNVLATCRLPFGIKIEEVAAKYPAESTYEPELSVGLVWRSTTPKATLRIHTTGSITVT 425
Query: 152 GAKSRSELHEAFDNIYPVLKSFK 174
GA S +++ E IYP++ F+
Sbjct: 426 GASSEADVLEVLSKIYPIVLDFR 448
>gi|426234833|ref|XP_004011396.1| PREDICTED: TATA box-binding protein-like protein 1 [Ovis aries]
Length = 186
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 8/175 (4%)
Query: 5 NMVGTISVGCPLDLNQI---NSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
N+V C L+L +I + V Y + GK ++MK+ PR T + SGK++ G
Sbjct: 15 NVVCVFRTRCHLNLRKIALEGANVIYKR-DVGK---VLMKLRKPRITATIWSSGKIICTG 70
Query: 62 AKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSY 121
A E + K +R+ A+ L++LG + + FK+ N++ C++ F ++L + +SY
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASY 130
Query: 122 EPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
EPEL P + YR+ R L IF G I +TG ++ + A + IYP + +K+
Sbjct: 131 EPELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKA-VASAVEQIYPFVFESRKE 184
>gi|448301779|ref|ZP_21491769.1| transcription factor [Natronorubrum tibetense GA33]
gi|445583403|gb|ELY37734.1| transcription factor [Natronorubrum tibetense GA33]
Length = 186
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 2/175 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
+ +N+V + +G LDL + + ++Y+P F GL+ + NP++ L F+SGK++
Sbjct: 8 ISIENVVASTGIGQELDLQSVAMDLEGADYDPENFPGLVYRTQNPKSAALIFRSGKIVCT 67
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQ-GFKIHNIVCTCDVRFPVKLDALH-HVHSQF 118
GA + L++L ++ + NIV + D+ + L+A+ + +
Sbjct: 68 GANSTEAVHGSLNVVFDKLRELQIQVEEDPEIIVQNIVSSADLGRNLNLNAIAIGLGLEN 127
Query: 119 SSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
YEPE FPGL+YR+ +P VV L+F +G++V+TG K + +A D I L+
Sbjct: 128 IEYEPEQFPGLVYRIDEPEVVALLFGSGKLVVTGGKQIEDAKQAVDVIVKRLEDL 182
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I N+V + + + L ++ + + + Y+PE FPGL+YR P+ LIF +G+IV
Sbjct: 8 ISIENVVASTGIGQELDLQSVA-MDLEGADYDPENFPGLVYRTQNPKSAALIFRSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFKKQ 176
TGA S +H + + ++ L+ + Q
Sbjct: 67 TGANSTEAVHGSLNVVFDKLRELQIQ 92
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYS--EYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + +G L+LN I + EY P +F GL+ +I P L F SGKL++ G
Sbjct: 102 QNIVSSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRIDEPEVVALLFGSGKLVVTG 161
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
K D K A K L+ LG
Sbjct: 162 GKQIEDAKQAVDVIVKRLEDLG 183
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.326 0.142 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,697,648,331
Number of Sequences: 23463169
Number of extensions: 102192851
Number of successful extensions: 244701
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 240731
Number of HSP's gapped (non-prelim): 1976
length of query: 176
length of database: 8,064,228,071
effective HSP length: 132
effective length of query: 44
effective length of database: 9,262,057,059
effective search space: 407530510596
effective search space used: 407530510596
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 71 (32.0 bits)