Query psy2814
Match_columns 176
No_of_seqs 134 out of 545
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 17:38:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ytb_A Protein (tata binding p 100.0 4.5E-70 1.5E-74 432.8 22.9 176 1-176 5-180 (180)
2 3eik_A Tata-box-binding protei 100.0 2.3E-68 7.9E-73 432.3 23.7 175 2-176 44-218 (218)
3 1rm1_A Tata-box binding protei 100.0 1.2E-67 4.1E-72 434.3 23.3 176 1-176 65-240 (240)
4 2z8u_A Tata-box-binding protei 100.0 6.1E-67 2.1E-71 417.3 22.6 174 1-175 13-187 (188)
5 1ais_A TBP, protein (tata-bind 100.0 3.3E-66 1.1E-70 411.5 21.8 172 1-173 9-181 (182)
6 1mp9_A Tata-binding protein; t 100.0 7.1E-66 2.4E-70 414.1 22.9 174 1-175 13-187 (198)
7 1rm1_A Tata-box binding protei 100.0 4E-34 1.4E-38 235.0 12.2 122 48-174 26-147 (240)
8 2z8u_A Tata-box-binding protei 100.0 1.2E-29 4.1E-34 202.1 11.5 84 1-84 104-187 (188)
9 1mp9_A Tata-binding protein; t 100.0 3.1E-29 1E-33 201.2 10.6 85 1-85 104-188 (198)
10 1ais_A TBP, protein (tata-bind 100.0 4.7E-29 1.6E-33 197.8 10.2 82 1-82 100-181 (182)
11 1ytb_A Protein (tata binding p 100.0 3.3E-28 1.1E-32 192.6 11.5 84 90-174 4-87 (180)
12 3eik_A Tata-box-binding protei 99.9 1.9E-26 6.4E-31 186.8 11.5 84 89-173 41-124 (218)
13 2d0b_A RNAse HIII, ribonucleas 94.3 0.041 1.4E-06 46.3 4.4 36 124-159 27-62 (310)
14 3vn5_A RNAse HIII, ribonucleas 93.5 0.035 1.2E-06 45.6 2.5 37 123-159 25-61 (257)
15 2d0b_A RNAse HIII, ribonucleas 93.5 0.069 2.3E-06 44.9 4.3 37 33-69 27-63 (310)
16 3vn5_A RNAse HIII, ribonucleas 93.4 0.02 6.8E-07 47.0 0.9 39 32-70 25-63 (257)
17 3krm_A Insulin-like growth fac 91.4 3.2 0.00011 30.5 11.3 98 57-176 51-160 (163)
18 2jzx_A Poly(RC)-binding protei 83.2 9.1 0.00031 27.9 9.0 99 56-172 49-159 (160)
19 2av4_A Thioredoxin-like protei 81.0 0.9 3.1E-05 34.6 2.6 34 137-170 96-141 (160)
20 2ctf_A Vigilin; K homology typ 77.7 2.6 8.9E-05 29.3 4.0 40 126-175 56-95 (102)
21 1t00_A Thioredoxin, TRX; redox 73.7 3.3 0.00011 27.4 3.6 29 139-167 80-110 (112)
22 2opv_A KHSRP protein; KH domai 71.8 6 0.00021 26.1 4.5 33 137-171 44-84 (85)
23 1fb6_A Thioredoxin M; electron 71.8 5 0.00017 25.9 4.1 28 139-166 75-104 (105)
24 2trx_A Thioredoxin; electron t 71.7 6.4 0.00022 25.6 4.7 29 139-167 77-107 (108)
25 3gnj_A Thioredoxin domain prot 70.5 7.6 0.00026 25.3 4.9 29 139-167 79-109 (111)
26 1dby_A Chloroplast thioredoxin 70.5 6.4 0.00022 25.6 4.4 28 139-166 76-105 (107)
27 1thx_A Thioredoxin, thioredoxi 69.7 5.8 0.0002 26.1 4.1 29 139-167 82-112 (115)
28 2o8v_B Thioredoxin 1; disulfid 69.4 7.2 0.00024 27.0 4.7 29 139-167 97-127 (128)
29 2e0q_A Thioredoxin; electron t 68.8 7.2 0.00025 24.9 4.4 29 139-167 72-102 (104)
30 3tco_A Thioredoxin (TRXA-1); d 68.3 6 0.00021 25.6 3.9 29 139-167 78-108 (109)
31 1w4v_A Thioredoxin, mitochondr 67.8 8.4 0.00029 26.0 4.7 29 139-167 88-118 (119)
32 2cte_A Vigilin; K homology typ 66.8 8.9 0.00031 25.9 4.6 29 145-175 59-87 (94)
33 2i4a_A Thioredoxin; acidophIle 66.4 7.2 0.00025 25.2 4.0 27 139-165 77-105 (107)
34 3hz4_A Thioredoxin; NYSGXRC, P 66.2 9.5 0.00033 26.6 4.9 33 139-171 81-115 (140)
35 2es7_A Q8ZP25_salty, putative 65.7 7.1 0.00024 28.1 4.1 30 139-168 94-125 (142)
36 3gix_A Thioredoxin-like protei 65.6 12 0.0004 26.8 5.3 33 139-171 80-124 (149)
37 2opv_A KHSRP protein; KH domai 65.3 9.8 0.00034 25.0 4.5 33 46-80 44-84 (85)
38 2yzu_A Thioredoxin; redox prot 64.8 4.9 0.00017 26.0 2.9 29 139-167 75-105 (109)
39 1v98_A Thioredoxin; oxidoreduc 64.4 10 0.00035 26.3 4.7 29 139-167 107-137 (140)
40 1dby_A Chloroplast thioredoxin 64.0 11 0.00037 24.4 4.6 29 47-75 75-105 (107)
41 3gnj_A Thioredoxin domain prot 63.6 12 0.00039 24.4 4.7 30 47-76 78-109 (111)
42 1t00_A Thioredoxin, TRX; redox 63.6 8.5 0.00029 25.3 4.0 29 48-76 80-110 (112)
43 2qgv_A Hydrogenase-1 operon pr 63.4 11 0.00036 27.8 4.7 30 138-167 93-124 (140)
44 2trx_A Thioredoxin; electron t 63.1 11 0.00038 24.4 4.5 29 47-75 76-106 (108)
45 2ctm_A Vigilin; K homology typ 63.0 10 0.00035 25.8 4.3 36 137-174 47-87 (95)
46 1ep7_A Thioredoxin CH1, H-type 62.9 12 0.0004 24.5 4.6 28 139-167 81-110 (112)
47 3m9j_A Thioredoxin; oxidoreduc 62.7 8.6 0.00029 24.8 3.8 27 139-166 76-104 (105)
48 3tco_A Thioredoxin (TRXA-1); d 62.2 8.5 0.00029 24.9 3.7 30 47-76 77-108 (109)
49 1r26_A Thioredoxin; redox-acti 61.6 14 0.00046 25.5 4.9 29 139-168 93-123 (125)
50 2o8v_B Thioredoxin 1; disulfid 61.1 12 0.0004 25.9 4.5 30 47-76 96-127 (128)
51 1fb6_A Thioredoxin M; electron 60.4 12 0.00043 23.9 4.3 28 48-75 75-104 (105)
52 2ppt_A Thioredoxin-2; thiredox 60.3 13 0.00044 26.8 4.7 29 139-167 121-151 (155)
53 3qfa_C Thioredoxin; protein-pr 60.3 9.2 0.00032 25.8 3.7 27 139-166 87-115 (116)
54 1thx_A Thioredoxin, thioredoxi 60.2 13 0.00046 24.2 4.5 30 47-76 81-112 (115)
55 2j23_A Thioredoxin; immune pro 60.1 8.2 0.00028 26.2 3.5 27 139-166 91-119 (121)
56 3d22_A TRXH4, thioredoxin H-ty 60.0 14 0.00048 25.4 4.8 30 139-169 102-133 (139)
57 3zzx_A Thioredoxin; oxidoreduc 60.0 12 0.00041 25.3 4.2 26 139-165 76-103 (105)
58 3p2a_A Thioredoxin 2, putative 59.6 12 0.0004 26.3 4.3 30 139-168 112-143 (148)
59 2es7_A Q8ZP25_salty, putative 59.6 11 0.00038 27.1 4.2 31 46-76 92-124 (142)
60 2jvz_A KH type-splicing, FAR u 59.4 46 0.0016 23.9 10.0 28 145-174 135-162 (164)
61 2b1k_A Thiol:disulfide interch 59.1 13 0.00046 26.3 4.6 37 138-174 128-166 (168)
62 2i4a_A Thioredoxin; acidophIle 58.2 11 0.00039 24.2 3.8 28 47-74 76-105 (107)
63 4euy_A Uncharacterized protein 58.1 7.5 0.00026 25.5 2.9 28 139-166 74-103 (105)
64 2voc_A Thioredoxin; electron t 58.1 11 0.00039 24.9 3.8 27 139-165 74-102 (112)
65 1w4v_A Thioredoxin, mitochondr 57.9 15 0.00051 24.7 4.5 28 48-75 88-117 (119)
66 2e0q_A Thioredoxin; electron t 57.7 16 0.00056 23.0 4.5 30 47-76 71-102 (104)
67 1kng_A Thiol:disulfide interch 57.0 15 0.0005 25.4 4.5 34 47-80 120-155 (156)
68 1syr_A Thioredoxin; SGPP, stru 56.3 7.9 0.00027 25.7 2.8 27 139-166 82-110 (112)
69 2vlu_A Thioredoxin, thioredoxi 56.2 14 0.00046 24.7 4.0 28 139-167 90-119 (122)
70 2qsi_A Putative hydrogenase ex 55.9 17 0.00059 26.5 4.7 30 138-167 91-122 (137)
71 1nsw_A Thioredoxin, TRX; therm 55.6 6.3 0.00021 25.6 2.1 27 139-165 74-102 (105)
72 2jvf_A De novo protein M7; tet 55.5 15 0.00053 24.3 3.9 25 61-85 55-79 (96)
73 3gix_A Thioredoxin-like protei 55.5 21 0.0007 25.5 5.1 34 48-81 80-125 (149)
74 3hz4_A Thioredoxin; NYSGXRC, P 55.0 18 0.00062 25.1 4.7 35 47-81 80-116 (140)
75 1kng_A Thiol:disulfide interch 54.9 16 0.00055 25.2 4.4 33 138-170 120-154 (156)
76 1v98_A Thioredoxin; oxidoreduc 54.6 17 0.0006 25.0 4.5 30 47-76 106-137 (140)
77 2ctf_A Vigilin; K homology typ 54.6 21 0.00073 24.5 4.8 28 53-82 66-93 (102)
78 1oaz_A Thioredoxin 1; immune s 54.4 9 0.00031 26.3 2.9 27 139-165 92-120 (123)
79 4euy_A Uncharacterized protein 54.4 8.6 0.00029 25.2 2.7 30 46-75 72-103 (105)
80 2axy_A Poly(RC)-binding protei 53.9 25 0.00085 22.3 4.8 33 138-172 36-72 (73)
81 1faa_A Thioredoxin F; electron 53.6 18 0.00063 24.1 4.4 27 139-166 94-122 (124)
82 2a4v_A Peroxiredoxin DOT5; yea 53.6 22 0.00074 25.1 5.0 37 138-175 120-158 (159)
83 3qfa_C Thioredoxin; protein-pr 53.5 15 0.00051 24.7 3.9 28 47-75 86-115 (116)
84 2i1u_A Thioredoxin, TRX, MPT46 53.4 2.8 9.4E-05 28.2 -0.0 28 139-166 87-116 (121)
85 2oe3_A Thioredoxin-3; electron 53.0 11 0.00037 25.4 3.1 25 139-164 86-112 (114)
86 2kuc_A Putative disulphide-iso 52.8 21 0.00073 24.0 4.6 29 139-167 89-120 (130)
87 2yzu_A Thioredoxin; redox prot 52.8 9.6 0.00033 24.5 2.7 29 47-75 74-104 (109)
88 2qgv_A Hydrogenase-1 operon pr 52.3 19 0.00066 26.3 4.5 31 46-76 92-124 (140)
89 3m9j_A Thioredoxin; oxidoreduc 51.6 20 0.0007 22.9 4.2 28 47-75 75-104 (105)
90 3p2a_A Thioredoxin 2, putative 51.6 17 0.00059 25.3 4.1 30 47-76 111-142 (148)
91 2ppt_A Thioredoxin-2; thiredox 51.0 20 0.0007 25.6 4.5 30 47-76 120-151 (155)
92 1ep7_A Thioredoxin CH1, H-type 50.7 23 0.00078 23.0 4.4 28 48-76 81-110 (112)
93 2av4_A Thioredoxin-like protei 50.7 20 0.0007 27.0 4.5 36 46-81 96-143 (160)
94 2voc_A Thioredoxin; electron t 50.6 16 0.00055 24.1 3.6 27 47-73 73-101 (112)
95 2xc2_A Thioredoxinn; oxidoredu 50.6 18 0.00062 23.9 3.9 27 139-166 88-116 (117)
96 2pu9_C TRX-F, thioredoxin F-ty 50.6 23 0.0008 23.1 4.5 27 139-166 81-109 (111)
97 1x4m_A FAR upstream element bi 50.0 13 0.00044 25.0 3.0 35 137-173 45-87 (94)
98 3d6i_A Monothiol glutaredoxin- 50.0 27 0.00091 22.7 4.7 30 139-169 79-110 (112)
99 2l6c_A Thioredoxin; oxidoreduc 49.2 14 0.00048 24.5 3.1 28 139-166 75-104 (110)
100 2o5a_A BH1328 protein; BHR21, 49.1 23 0.0008 25.5 4.4 31 54-85 35-65 (125)
101 2vim_A Thioredoxin, TRX; thior 49.0 27 0.00094 22.1 4.5 27 139-166 75-103 (104)
102 1xfl_A Thioredoxin H1; AT3G510 48.7 24 0.00083 23.9 4.4 27 139-166 94-122 (124)
103 2fwh_A Thiol:disulfide interch 48.2 7.8 0.00027 26.9 1.7 30 139-168 94-128 (134)
104 2p2r_A Poly(RC)-binding protei 48.0 26 0.00089 22.3 4.2 26 145-172 49-74 (76)
105 1x4m_A FAR upstream element bi 47.9 18 0.00061 24.3 3.5 36 46-83 45-88 (94)
106 2id1_A Hypothetical protein; a 47.4 26 0.00089 25.5 4.5 31 54-85 35-65 (130)
107 1r26_A Thioredoxin; redox-acti 47.3 29 0.00099 23.7 4.7 28 48-76 93-122 (125)
108 3die_A Thioredoxin, TRX; elect 47.3 15 0.0005 23.6 2.9 27 139-165 76-104 (106)
109 2j23_A Thioredoxin; immune pro 47.2 21 0.00073 24.0 3.9 27 48-75 91-119 (121)
110 3d22_A TRXH4, thioredoxin H-ty 47.0 28 0.00096 23.7 4.6 29 48-77 102-132 (139)
111 1ti3_A Thioredoxin H, PTTRXH1; 46.8 27 0.00092 22.6 4.3 29 139-168 82-112 (113)
112 2b1k_A Thiol:disulfide interch 46.7 27 0.00093 24.6 4.6 35 47-81 128-164 (168)
113 3emx_A Thioredoxin; structural 46.6 27 0.00092 24.1 4.4 29 48-76 95-125 (135)
114 2l57_A Uncharacterized protein 46.5 29 0.00098 23.2 4.5 28 139-166 85-115 (126)
115 2in3_A Hypothetical protein; D 46.1 24 0.00081 26.3 4.3 30 139-168 179-210 (216)
116 3uvt_A Thioredoxin domain-cont 45.9 24 0.00082 22.7 3.9 27 139-165 81-109 (111)
117 1zzk_A Heterogeneous nuclear r 45.7 42 0.0014 21.6 5.0 26 146-173 52-77 (82)
118 1oaz_A Thioredoxin 1; immune s 45.5 15 0.0005 25.2 2.8 28 47-74 91-120 (123)
119 3emx_A Thioredoxin; structural 45.1 24 0.00081 24.3 3.9 30 139-168 95-126 (135)
120 1x5d_A Protein disulfide-isome 45.1 30 0.001 23.2 4.4 30 139-168 86-117 (133)
121 2kuc_A Putative disulphide-iso 44.8 35 0.0012 22.8 4.7 29 47-75 88-119 (130)
122 1j5k_A Heterogeneous nuclear r 44.4 39 0.0013 22.2 4.7 27 145-173 58-84 (89)
123 1x4n_A FAR upstream element bi 44.4 45 0.0015 22.1 5.1 28 146-175 60-87 (92)
124 1xwb_A Thioredoxin; dimerizati 44.2 28 0.00096 22.1 4.0 26 139-165 77-104 (106)
125 1syr_A Thioredoxin; SGPP, stru 44.1 15 0.00051 24.3 2.6 26 48-74 82-109 (112)
126 1zzo_A RV1677; thioredoxin fol 43.3 27 0.00091 23.1 3.9 29 139-167 104-134 (136)
127 2nmm_A 14 kDa phosphohistidine 43.2 41 0.0014 24.6 5.0 64 24-87 18-82 (135)
128 2hw4_A 14 kDa phosphohistidine 42.6 36 0.0012 25.3 4.6 64 24-87 27-91 (144)
129 2znm_A Thiol:disulfide interch 42.6 24 0.00083 25.8 3.8 31 143-173 155-185 (195)
130 2vm1_A Thioredoxin, thioredoxi 42.6 41 0.0014 21.8 4.7 28 139-167 84-113 (118)
131 2vlu_A Thioredoxin, thioredoxi 42.4 35 0.0012 22.5 4.3 27 48-75 90-118 (122)
132 2hh2_A KH-type splicing regula 42.4 21 0.00073 24.5 3.2 26 146-173 55-80 (107)
133 2l57_A Uncharacterized protein 41.8 38 0.0013 22.6 4.5 29 47-75 84-115 (126)
134 2axy_A Poly(RC)-binding protei 41.4 48 0.0016 20.9 4.6 33 47-81 36-72 (73)
135 1lu4_A Soluble secreted antige 41.3 23 0.00079 23.6 3.3 29 139-167 102-135 (136)
136 2ctl_A Vigilin; K homology typ 41.1 38 0.0013 22.8 4.3 36 138-175 48-90 (97)
137 3qou_A Protein YBBN; thioredox 41.1 21 0.00072 27.8 3.4 30 139-168 83-114 (287)
138 2ggt_A SCO1 protein homolog, m 40.9 43 0.0015 23.2 4.8 34 138-174 129-164 (164)
139 2ctk_A Vigilin; K homology typ 40.8 31 0.0011 23.6 3.9 36 137-174 47-86 (104)
140 1nho_A Probable thioredoxin; b 40.0 32 0.0011 20.9 3.6 22 145-166 62-83 (85)
141 2ctm_A Vigilin; K homology typ 40.0 40 0.0014 22.6 4.3 35 46-82 47-86 (95)
142 2oe3_A Thioredoxin-3; electron 39.8 21 0.00073 23.9 2.9 25 48-73 86-112 (114)
143 2ctj_A Vigilin; K homology typ 39.7 25 0.00086 23.8 3.2 26 147-174 62-87 (95)
144 3f3q_A Thioredoxin-1; His TAG, 39.7 42 0.0014 21.9 4.4 27 139-166 80-108 (109)
145 1faa_A Thioredoxin F; electron 39.5 38 0.0013 22.5 4.2 27 48-75 94-122 (124)
146 2a4v_A Peroxiredoxin DOT5; yea 39.3 44 0.0015 23.4 4.7 35 47-82 120-156 (159)
147 1zma_A Bacterocin transport ac 38.9 15 0.00052 24.5 2.0 25 139-163 90-116 (118)
148 2qsi_A Putative hydrogenase ex 38.8 49 0.0017 24.0 4.9 32 46-77 90-123 (137)
149 1gh2_A Thioredoxin-like protei 38.7 35 0.0012 22.0 3.8 27 139-166 77-105 (107)
150 3h93_A Thiol:disulfide interch 38.4 39 0.0013 24.7 4.4 28 145-172 159-188 (192)
151 2opa_A Probable tautomerase YW 37.8 61 0.0021 18.9 5.7 33 57-89 5-38 (61)
152 2cte_A Vigilin; K homology typ 37.5 40 0.0014 22.5 4.0 27 54-82 59-85 (94)
153 2hh2_A KH-type splicing regula 37.0 30 0.001 23.8 3.3 26 55-82 55-80 (107)
154 1fo5_A Thioredoxin; disulfide 36.7 21 0.0007 21.9 2.2 22 145-166 63-84 (85)
155 3dml_A Putative uncharacterize 36.7 69 0.0024 22.4 5.3 32 138-169 78-111 (116)
156 2hh3_A KH-type splicing regula 36.6 60 0.0021 22.3 4.8 26 147-174 57-82 (106)
157 3mm5_A Sulfite reductase, diss 36.3 52 0.0018 28.4 5.4 64 31-99 85-176 (418)
158 1qgv_A Spliceosomal protein U5 36.3 40 0.0014 23.7 4.0 21 150-170 102-123 (142)
159 2yj7_A LPBCA thioredoxin; oxid 42.5 7.5 0.00026 24.8 0.0 28 139-166 76-105 (106)
160 1x5d_A Protein disulfide-isome 36.1 46 0.0016 22.2 4.2 31 47-77 85-117 (133)
161 3dml_A Putative uncharacterize 36.0 65 0.0022 22.5 5.0 33 47-79 78-112 (116)
162 4dvc_A Thiol:disulfide interch 36.0 26 0.00089 25.0 3.0 26 142-167 154-181 (184)
163 3h93_A Thiol:disulfide interch 35.8 48 0.0016 24.1 4.5 28 54-81 159-188 (192)
164 1ec6_A RNA-binding protein NOV 35.7 62 0.0021 21.0 4.6 27 145-173 50-76 (87)
165 3ups_A Iojap-like protein; PSI 35.4 33 0.0011 25.1 3.4 31 54-85 51-81 (136)
166 2fwh_A Thiol:disulfide interch 35.0 17 0.00059 25.0 1.8 30 47-76 93-127 (134)
167 2in3_A Hypothetical protein; D 34.9 41 0.0014 24.9 4.1 31 47-77 178-210 (216)
168 3it4_B Arginine biosynthesis b 34.7 31 0.0011 27.1 3.4 21 57-77 89-109 (205)
169 2l5l_A Thioredoxin; structural 34.6 40 0.0014 23.0 3.7 30 139-168 95-126 (136)
170 2rli_A SCO2 protein homolog, m 34.6 54 0.0018 22.9 4.5 31 138-168 132-164 (171)
171 2dj1_A Protein disulfide-isome 34.0 48 0.0016 22.4 4.0 29 139-167 94-123 (140)
172 1we8_A Tudor and KH domain con 33.8 64 0.0022 21.8 4.6 26 145-172 61-86 (104)
173 3u27_C Microcompartments prote 33.8 47 0.0016 26.3 4.3 28 145-172 83-111 (220)
174 1dtj_A RNA-binding neurooncolo 33.6 42 0.0014 21.1 3.4 25 145-171 50-74 (76)
175 1otf_A 4-oxalocrotonate tautom 33.2 74 0.0025 18.5 5.7 33 57-89 5-38 (62)
176 2rem_A Disulfide oxidoreductas 33.1 50 0.0017 23.9 4.2 27 143-170 160-186 (193)
177 1xhk_A Putative protease LA ho 32.1 49 0.0017 25.0 4.1 23 55-81 39-61 (187)
178 3dxb_A Thioredoxin N-terminall 31.8 58 0.002 24.5 4.5 29 139-167 87-117 (222)
179 3kij_A Probable glutathione pe 31.3 41 0.0014 24.2 3.4 33 139-171 139-173 (180)
180 3feu_A Putative lipoprotein; a 31.2 38 0.0013 25.1 3.3 24 144-167 158-183 (185)
181 3nec_A Profilin, inflammatory 31.1 92 0.0032 23.3 5.4 42 43-84 118-166 (166)
182 3or1_A Sulfite reductase alpha 31.0 83 0.0028 27.3 5.8 65 31-100 87-178 (437)
183 3lwa_A Secreted thiol-disulfid 30.8 64 0.0022 23.0 4.4 31 138-168 149-181 (183)
184 3kh7_A Thiol:disulfide interch 30.6 75 0.0026 22.8 4.8 35 47-81 135-171 (176)
185 2hh3_A KH-type splicing regula 30.4 90 0.0031 21.3 4.9 34 47-82 42-81 (106)
186 1vra_B Arginine biosynthesis b 30.3 33 0.0011 27.1 2.8 21 57-77 95-115 (215)
187 2v4i_B Glutamate N-acetyltrans 30.1 33 0.0011 27.1 2.8 21 57-77 88-108 (213)
188 2ggt_A SCO1 protein homolog, m 30.1 86 0.0029 21.5 4.9 30 47-76 129-160 (164)
189 1a8l_A Protein disulfide oxido 30.0 71 0.0024 23.6 4.7 118 47-166 80-224 (226)
190 1whq_A RNA helicase A; double- 29.7 74 0.0025 21.6 4.3 40 44-83 35-77 (99)
191 3i96_A Ethanolamine utilizatio 29.6 74 0.0025 22.7 4.4 26 145-172 74-99 (119)
192 1mek_A Protein disulfide isome 29.6 33 0.0011 22.2 2.4 27 139-165 84-114 (120)
193 2vqe_K 30S ribosomal protein S 29.3 50 0.0017 23.8 3.5 52 34-85 24-78 (129)
194 3hz8_A Thiol:disulfide interch 29.2 61 0.0021 24.0 4.1 29 144-173 160-188 (193)
195 3apq_A DNAJ homolog subfamily 29.1 41 0.0014 25.0 3.2 30 139-168 171-202 (210)
196 2ctj_A Vigilin; K homology typ 29.0 49 0.0017 22.3 3.3 35 46-82 48-86 (95)
197 3adj_A F21M12.9 protein; HYL1, 28.9 1E+02 0.0036 19.4 4.8 36 44-79 35-72 (76)
198 2b7k_A SCO1 protein; metalloch 28.8 54 0.0018 24.2 3.8 43 128-170 137-181 (200)
199 3r8n_K 30S ribosomal protein S 28.7 24 0.00084 25.1 1.7 51 35-85 15-68 (117)
200 1acf_A Profilin I; protein bin 28.6 1.2E+02 0.0042 21.2 5.5 40 45-84 82-125 (125)
201 2rem_A Disulfide oxidoreductas 28.5 67 0.0023 23.2 4.2 28 52-80 160-187 (193)
202 2znm_A Thiol:disulfide interch 28.5 53 0.0018 23.8 3.7 30 52-81 155-184 (195)
203 2ctl_A Vigilin; K homology typ 28.2 82 0.0028 21.1 4.3 35 46-82 47-88 (97)
204 3io0_A ETUB protein; tamdem re 28.1 73 0.0025 25.4 4.5 29 145-173 82-110 (230)
205 2l5o_A Putative thioredoxin; s 28.0 59 0.002 22.1 3.7 29 140-168 110-141 (153)
206 3evi_A Phosducin-like protein 27.9 23 0.0008 24.5 1.4 39 46-84 74-114 (118)
207 2dbc_A PDCL2, unnamed protein 27.7 46 0.0016 22.9 3.1 28 139-166 83-119 (135)
208 1vig_A Vigilin; RNA-binding pr 27.7 56 0.0019 20.5 3.2 31 137-169 35-69 (71)
209 2rli_A SCO2 protein homolog, m 27.4 1.1E+02 0.0038 21.1 5.2 32 47-78 132-165 (171)
210 3qou_A Protein YBBN; thioredox 27.2 69 0.0024 24.7 4.3 29 47-75 82-112 (287)
211 3nul_A Profilin I; cytoskeleto 27.2 1.4E+02 0.0047 21.1 5.6 39 46-84 88-130 (130)
212 2pbd_P Profilin-1, profilin I; 27.1 96 0.0033 22.3 4.8 36 49-84 100-139 (139)
213 3kij_A Probable glutathione pe 27.0 77 0.0026 22.7 4.3 33 48-80 139-173 (180)
214 4f9u_A CG32412; alpha/beta hyd 26.9 78 0.0027 25.3 4.7 34 68-101 31-74 (312)
215 3rjs_A Dynein light chain moto 26.8 39 0.0013 22.6 2.4 27 116-146 63-89 (89)
216 2h30_A Thioredoxin, peptide me 26.7 26 0.00088 24.4 1.5 35 139-173 125-161 (164)
217 3ha9_A Uncharacterized thiored 26.5 69 0.0024 22.3 3.9 29 139-167 134-163 (165)
218 3u27_C Microcompartments prote 26.3 72 0.0025 25.2 4.2 29 54-82 83-112 (220)
219 3c7m_A Thiol:disulfide interch 26.2 59 0.002 23.4 3.5 25 143-167 167-193 (195)
220 3kh7_A Thiol:disulfide interch 26.1 97 0.0033 22.1 4.7 34 138-171 135-170 (176)
221 3ul3_B Thioredoxin, thioredoxi 26.1 59 0.002 21.8 3.3 26 139-164 99-126 (128)
222 1sen_A Thioredoxin-like protei 25.9 53 0.0018 23.5 3.2 33 139-171 106-151 (164)
223 4hhu_A OR280; engineered prote 25.9 1.9E+02 0.0065 20.9 8.0 95 57-170 45-146 (170)
224 3krm_A Insulin-like growth fac 25.8 88 0.003 22.4 4.4 35 46-82 115-157 (163)
225 3lwa_A Secreted thiol-disulfid 25.4 92 0.0031 22.1 4.5 30 47-76 149-180 (183)
226 3sir_A Caspase; hydrolase; 2.6 25.4 27 0.00093 27.9 1.6 49 39-87 12-61 (259)
227 4fay_A Microcompartments prote 25.4 87 0.003 25.4 4.6 29 145-173 110-138 (258)
228 2ctk_A Vigilin; K homology typ 25.2 81 0.0028 21.4 3.9 35 46-82 47-85 (104)
229 2dko_A Caspase-3; low barrier 25.0 31 0.0011 25.3 1.7 49 40-88 9-59 (146)
230 1rre_A ATP-dependent protease 24.9 96 0.0033 23.7 4.7 34 53-87 36-73 (200)
231 3dxb_A Thioredoxin N-terminall 24.9 84 0.0029 23.5 4.3 107 47-166 86-195 (222)
232 3adg_A F21M12.9 protein; HYL1, 24.8 1.3E+02 0.0045 18.7 4.9 36 44-79 33-71 (73)
233 1x5e_A Thioredoxin domain cont 24.8 52 0.0018 21.8 2.8 28 139-166 80-108 (126)
234 3h79_A Thioredoxin-like protei 24.8 69 0.0024 21.3 3.5 27 139-165 95-125 (127)
235 1uil_A Double-stranded RNA-bin 24.4 1.8E+02 0.0061 20.1 5.8 41 44-84 55-102 (113)
236 3ia1_A THIO-disulfide isomeras 24.4 1.1E+02 0.0037 20.8 4.5 29 138-166 112-142 (154)
237 1ilo_A Conserved hypothetical 24.1 48 0.0016 19.8 2.3 18 145-162 57-75 (77)
238 1m72_A Caspase-1; caspase, cys 24.0 29 0.001 28.0 1.5 49 39-87 24-73 (272)
239 1wvn_A Poly(RC)-binding protei 24.0 59 0.002 20.8 2.8 26 145-172 50-75 (82)
240 3iwl_A Copper transport protei 23.9 59 0.002 19.3 2.7 23 143-165 35-57 (68)
241 2ywm_A Glutaredoxin-like prote 23.5 87 0.003 23.2 4.2 124 47-175 83-227 (229)
242 2fp3_A Caspase NC; apoptosis, 23.4 29 0.00099 28.7 1.4 48 39-87 52-101 (316)
243 1k1g_A SF1-BO isoform; splicin 23.4 1.3E+02 0.0044 21.5 4.8 27 145-172 73-99 (131)
244 2b5x_A YKUV protein, TRXY; thi 23.3 1.1E+02 0.0038 20.2 4.4 29 139-167 113-144 (148)
245 3feu_A Putative lipoprotein; a 23.3 67 0.0023 23.6 3.4 24 53-76 158-183 (185)
246 2ql9_A Caspase-7; cysteine pro 23.2 15 0.00051 28.0 -0.4 60 29-88 26-87 (173)
247 4ds1_A Dynein light chain 1, c 23.2 39 0.0013 23.1 1.8 26 117-146 72-97 (97)
248 3c4b_A Endoribonuclease dicer; 23.1 1.9E+02 0.0066 22.5 6.3 42 40-81 220-263 (265)
249 3ph9_A Anterior gradient prote 23.0 37 0.0013 24.6 1.8 37 139-175 103-149 (151)
250 4evm_A Thioredoxin family prot 23.0 87 0.003 20.3 3.7 28 139-166 107-137 (138)
251 2wz9_A Glutaredoxin-3; protein 22.8 1.1E+02 0.0038 21.2 4.4 28 139-167 88-117 (153)
252 1fao_A Dual adaptor of phospho 22.7 1.7E+02 0.0059 19.3 5.5 38 139-176 80-117 (126)
253 3hz8_A Thiol:disulfide interch 22.7 98 0.0034 22.8 4.2 28 53-81 160-187 (193)
254 2yqr_A KIAA0907 protein; struc 22.7 1.8E+02 0.0062 20.4 5.4 30 144-174 72-101 (119)
255 3tqm_A Ribosome-associated fac 22.6 94 0.0032 20.6 3.7 35 46-81 49-83 (96)
256 3eyt_A Uncharacterized protein 22.5 1.4E+02 0.0046 20.3 4.8 30 138-167 120-151 (158)
257 1a8l_A Protein disulfide oxido 22.5 1.1E+02 0.0037 22.5 4.5 29 47-75 194-224 (226)
258 3kjj_A NMB1025 protein; YJGF p 22.4 48 0.0016 23.5 2.3 38 50-87 29-66 (128)
259 1eej_A Thiol:disulfide interch 22.0 1.2E+02 0.004 22.7 4.7 31 139-171 184-214 (216)
260 1mww_A Hypothetical protein HI 21.8 2E+02 0.0067 19.6 5.7 40 56-95 63-103 (128)
261 1di2_A XLRBPA, double stranded 21.7 1.5E+02 0.0051 18.2 5.0 35 44-79 31-67 (69)
262 2xzm_K RPS14E; ribosome, trans 21.7 36 0.0012 25.4 1.5 46 40-85 42-91 (151)
263 3iij_A Coilin-interacting nucl 21.5 1.1E+02 0.0036 21.8 4.1 31 145-175 146-176 (180)
264 2jkg_A Profilin; proline-rich 21.4 1.7E+02 0.0057 22.4 5.2 45 41-85 121-172 (179)
265 3gl5_A Putative DSBA oxidoredu 21.4 98 0.0034 23.9 4.2 24 145-168 190-213 (239)
266 2vup_A Glutathione peroxidase- 21.4 1.1E+02 0.0039 22.0 4.3 30 138-167 153-184 (190)
267 2fgx_A Putative thioredoxin; N 21.4 63 0.0022 22.2 2.7 25 139-163 82-106 (107)
268 2b7t_A Double-stranded RNA-spe 21.3 1.6E+02 0.0054 18.3 5.9 37 44-81 33-71 (73)
269 1yo3_A Dynein light chain 1; s 21.3 79 0.0027 21.7 3.1 27 116-146 76-102 (102)
270 3kgw_A Alanine-glyoxylate amin 21.2 3E+02 0.01 21.5 9.0 23 154-176 369-391 (393)
271 3fsi_A RT, reverse transcripta 20.9 97 0.0033 24.0 4.0 42 45-88 192-233 (255)
272 3d9y_A Profilin; yeast, actin- 20.7 2.2E+02 0.0076 19.8 6.5 38 47-84 86-127 (127)
273 3hrg_A Uncharacterized protein 20.6 2.5E+02 0.0085 22.1 6.5 97 23-124 133-245 (257)
274 3ry0_A Putative tautomerase; o 20.6 1.5E+02 0.005 17.7 5.7 32 58-89 6-38 (65)
275 1pyo_A Caspase-2; apoptosis, c 20.5 42 0.0014 25.1 1.7 49 40-88 26-76 (167)
276 2anr_A Neuro-oncological ventr 20.5 1.3E+02 0.0044 21.9 4.5 25 146-172 151-175 (178)
277 3tqm_A Ribosome-associated fac 20.5 1.1E+02 0.0036 20.3 3.7 37 137-174 49-89 (96)
278 3i96_A Ethanolamine utilizatio 20.5 1.2E+02 0.0042 21.5 4.1 30 54-85 74-104 (119)
279 2noc_A Putative periplasmic pr 20.5 49 0.0017 22.8 1.9 25 144-168 39-63 (99)
280 3abf_A 4-oxalocrotonate tautom 20.4 1.4E+02 0.0048 17.4 6.0 39 57-95 6-45 (64)
281 3gtz_A Putative translation in 20.3 41 0.0014 23.6 1.5 38 50-87 23-60 (124)
282 1nw9_B Caspase 9, apoptosis-re 20.2 39 0.0013 27.1 1.6 48 40-87 14-63 (277)
283 2dj0_A Thioredoxin-related tra 20.2 9.6 0.00033 26.4 -1.9 36 47-82 89-126 (137)
No 1
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=100.00 E-value=4.5e-70 Score=432.80 Aligned_cols=176 Identities=56% Similarity=1.013 Sum_probs=173.1
Q ss_pred CeEEEEEEEEEeCCccChhhHhhcCCCcEEccCCCceEEEEEcCCeEEEEEecCccEEEEcccCHHHHHHHHHHHHHHHH
Q psy2814 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 80 (176)
Q Consensus 1 ~~I~Nvvas~~l~~~idL~~la~~~~n~~Y~P~~fpgl~~R~~~p~~t~~If~sGKivitGaks~~~~~~a~~~i~~~L~ 80 (176)
++|+|||||++++++|||++||..++|++||||+||||+||+++|+++++||+||||+||||||+++++.|+++++++|+
T Consensus 5 ~~I~NiVas~~l~~~ldL~~ia~~~~n~eYePe~fpgli~R~~~Pk~~~lIF~SGKiv~TGaks~e~~~~a~~~i~~~L~ 84 (180)
T 1ytb_A 5 PTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQ 84 (180)
T ss_dssp CEEEEEEEEEECCSCCCHHHHHHHSSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEEEcCCccCHHHHHhhCCCCEECccccCCEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccceeeeeeEEEEeeeCcccCHHHHHHHcCCCcccCCCCCceeEEEEcCCeEEEEEeccceEEEEecCCHHHHH
Q psy2814 81 QLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELH 160 (176)
Q Consensus 81 ~~g~~~~~~~~~i~nIvas~~l~~~i~L~~l~~~~~~~~~YePe~fpgl~~r~~~~~~t~~IF~sGkivitGaks~~~~~ 160 (176)
++|+++++.+|+|||||||+|++++|||++|+..|+++++||||+||||+||+.+|+++++||+||||+|||||+++|++
T Consensus 85 ~lg~~~~~~~~~i~NIvas~dl~~~I~Le~la~~~~~~~~YEPE~fPGliyR~~~pkv~~lIF~SGkivitGak~~~~~~ 164 (180)
T 1ytb_A 85 KIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIY 164 (180)
T ss_dssp HHTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHTTTTEECCTTTCSSEEEECSSSCCEEEECTTSEEEEEEESSHHHHH
T ss_pred HcCCCcccccceEEEEEEEEECCCccCHHHHHHhcccceEECCccCCcEEEEeCCCcEEEEEecCCeEEEEecCCHHHHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcC
Q psy2814 161 EAFDNIYPVLKSFKKQ 176 (176)
Q Consensus 161 ~a~~~i~~~L~~~r~~ 176 (176)
+|++.|+|+|.+||+.
T Consensus 165 ~a~~~i~p~L~~~~~~ 180 (180)
T 1ytb_A 165 QAFEAIYPVLSEFRKM 180 (180)
T ss_dssp HHHHHHHHHHHHTBCC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999974
No 2
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=100.00 E-value=2.3e-68 Score=432.34 Aligned_cols=175 Identities=52% Similarity=0.969 Sum_probs=172.2
Q ss_pred eEEEEEEEEEeCCccChhhHhhcCCCcEEccCCCceEEEEEcCCeEEEEEecCccEEEEcccCHHHHHHHHHHHHHHHHh
Q psy2814 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 81 (176)
Q Consensus 2 ~I~Nvvas~~l~~~idL~~la~~~~n~~Y~P~~fpgl~~R~~~p~~t~~If~sGKivitGaks~~~~~~a~~~i~~~L~~ 81 (176)
+|+|||||++++|+|||++||..++|++|||++||||+||+++|+++++||+||||+||||+|+++++.|+++++++|++
T Consensus 44 ~I~NIVas~~l~~~ldL~~ia~~~~n~eYePe~Fpglv~Rl~~Pk~t~LIF~SGKiV~TGAkS~e~a~~A~~ki~~~L~~ 123 (218)
T 3eik_A 44 TLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAKSEKSSRMAAQRYAKIIHK 123 (218)
T ss_dssp EEEEEEEEEECSSCCCHHHHHHHCTTEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEECCCccCHHHHHhhCCCcEEcCccCceEEEEecCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccceeeeeeEEEEeeeCcccCHHHHHHHcCCCcccCCCCCceeEEEEcCCeEEEEEeccceEEEEecCCHHHHHH
Q psy2814 82 LGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHE 161 (176)
Q Consensus 82 ~g~~~~~~~~~i~nIvas~~l~~~i~L~~l~~~~~~~~~YePe~fpgl~~r~~~~~~t~~IF~sGkivitGaks~~~~~~ 161 (176)
+|+++++.+|+|||||||||++|+|||++|+..++++++||||+||||+||+.+|++|++||+||||+|||||+++|+++
T Consensus 124 lG~~v~~~~fkIqNIvas~dl~f~I~Le~la~~~~~~~~YEPE~fPGliyR~~~pkvt~lIF~SGKiviTGaks~~d~~~ 203 (218)
T 3eik_A 124 LGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQ 203 (218)
T ss_dssp TTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHSTTTEECCTTTSSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHH
T ss_pred cCCCcccccceEEEEEEEEECCCcCcHHHHHHhccCCcEECCccCceEEEEcCCCCEEEEEeCCCeEEEEecCCHHHHHH
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcC
Q psy2814 162 AFDNIYPVLKSFKKQ 176 (176)
Q Consensus 162 a~~~i~~~L~~~r~~ 176 (176)
|++.|+|+|.+|||.
T Consensus 204 A~~~I~p~L~~frk~ 218 (218)
T 3eik_A 204 AFNNIYPVLIQHRKA 218 (218)
T ss_dssp HHHHHHHHHHHTBC-
T ss_pred HHHHHHHHHHHhhcC
Confidence 999999999999984
No 3
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=100.00 E-value=1.2e-67 Score=434.30 Aligned_cols=176 Identities=56% Similarity=1.013 Sum_probs=173.1
Q ss_pred CeEEEEEEEEEeCCccChhhHhhcCCCcEEccCCCceEEEEEcCCeEEEEEecCccEEEEcccCHHHHHHHHHHHHHHHH
Q psy2814 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 80 (176)
Q Consensus 1 ~~I~Nvvas~~l~~~idL~~la~~~~n~~Y~P~~fpgl~~R~~~p~~t~~If~sGKivitGaks~~~~~~a~~~i~~~L~ 80 (176)
++|+|||||++++|+|||++||..++|++|||++||||+||+++|+++++||+||||+||||||+++++.|+++++++|+
T Consensus 65 ~~I~NIVas~~l~~~ldL~~ia~~~~n~eYePe~Fpgli~Rl~~Pk~t~lIF~SGKiV~TGaks~e~a~~A~~~i~~~L~ 144 (240)
T 1rm1_A 65 PTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQ 144 (240)
T ss_dssp CEEEEEEEEEECCSCCCHHHHHHHBTTEEECTTTCSEEEEEEETTEEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEEEcCCccCHHHHHhhCCCcEEcCcccceEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccceeeeeeEEEEeeeCcccCHHHHHHHcCCCcccCCCCCceeEEEEcCCeEEEEEeccceEEEEecCCHHHHH
Q psy2814 81 QLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELH 160 (176)
Q Consensus 81 ~~g~~~~~~~~~i~nIvas~~l~~~i~L~~l~~~~~~~~~YePe~fpgl~~r~~~~~~t~~IF~sGkivitGaks~~~~~ 160 (176)
++|+++++.+|+|||||||+|++++|||++|+..|+++++||||+||||+||+.+|+++++||+||||+|||+|+++|++
T Consensus 145 ~lg~~~~~~~f~IqNIVas~dl~f~I~Le~la~~~~~~~~YEPE~fPGLiyR~~~pkvvllIF~SGKIviTGaK~~~~~~ 224 (240)
T 1rm1_A 145 KIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIY 224 (240)
T ss_dssp HHTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHTTTTEEEETTTEEEEEEEETTTTEEEEECTTSEEEEEEESSHHHHH
T ss_pred HcCCCcccCcceEEEEEEEEeCCCccCHHHHHHhchhccEECCccCCceEEEeCCCcEEEEEecCCEEEEEecCCHHHHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcC
Q psy2814 161 EAFDNIYPVLKSFKKQ 176 (176)
Q Consensus 161 ~a~~~i~~~L~~~r~~ 176 (176)
+|++.|+|+|.+||++
T Consensus 225 ~Ai~~i~p~L~~~~~~ 240 (240)
T 1rm1_A 225 QAFEAIYPVLSEFRKM 240 (240)
T ss_dssp HHHHHHHHHHHHTBCC
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999999984
No 4
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=100.00 E-value=6.1e-67 Score=417.33 Aligned_cols=174 Identities=35% Similarity=0.618 Sum_probs=162.3
Q ss_pred CeEEEEEEEEEeCCccChhhHhhcCCCcEEccCCCceEEEEEcCCeEEEEEecCccEEEEcccCHHHHHHHHHHHHHHHH
Q psy2814 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 80 (176)
Q Consensus 1 ~~I~Nvvas~~l~~~idL~~la~~~~n~~Y~P~~fpgl~~R~~~p~~t~~If~sGKivitGaks~~~~~~a~~~i~~~L~ 80 (176)
++|+|||||++++|+|||++||..++|++|||++|||++||+++|+++++||+||||+||||+|+++++.|+++++++|+
T Consensus 13 ~~i~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGAkS~e~a~~a~~~~~~~L~ 92 (188)
T 2z8u_A 13 IKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKSKEEAEIAIKKIIKELK 92 (188)
T ss_dssp CEEEEEEEEEECCSSCCHHHHHHHSSCCC-------CEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEEEEeCCeeCHHHHHhhCCCCEECCCCcccEEEEcCCCcEEEEEeCCCeEEEecCCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCC-cccceeeeeeEEEEeeeCcccCHHHHHHHcCCCcccCCCCCceeEEEEcCCeEEEEEeccceEEEEecCCHHHH
Q psy2814 81 QLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSEL 159 (176)
Q Consensus 81 ~~g~~-~~~~~~~i~nIvas~~l~~~i~L~~l~~~~~~~~~YePe~fpgl~~r~~~~~~t~~IF~sGkivitGaks~~~~ 159 (176)
++|++ .++.+|+|+|||||+|++++|||++|+.. .++++||||+||||+||+.+|+++++||+||||+||||||++++
T Consensus 93 ~lg~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~-~~~~eYePe~fPgliyR~~~Pk~t~lIF~SGKiviTGaks~~~~ 171 (188)
T 2z8u_A 93 DAGIDVIENPEIKIQNMVATADLGIEPNLDDIALM-VEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDA 171 (188)
T ss_dssp HTTCCCCSSCCCEEEEEEEEEECSSCCCHHHHHHH-STTEEECTTTSSSEEEEEETTEEEEEECTTSEEEEESCSCHHHH
T ss_pred hcCCCccccCceEEEEEEEEEecCCccCHHHHHhh-CcCcEECCccCceEEEEeCCCcEEEEEeCCCEEEEEecCCHHHH
Confidence 99998 67899999999999999999999999976 48899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q psy2814 160 HEAFDNIYPVLKSFKK 175 (176)
Q Consensus 160 ~~a~~~i~~~L~~~r~ 175 (176)
+.|+++|+|+|+++++
T Consensus 172 ~~A~~~i~~~L~~~~~ 187 (188)
T 2z8u_A 172 KRALKKILDTIKEVQE 187 (188)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999999986
No 5
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=100.00 E-value=3.3e-66 Score=411.47 Aligned_cols=172 Identities=34% Similarity=0.592 Sum_probs=167.5
Q ss_pred CeEEEEEEEEEeCCccChhhHhhcCCCcEEccCCCceEEEEEcCCeEEEEEecCccEEEEcccCHHHHHHHHHHHHHHHH
Q psy2814 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 80 (176)
Q Consensus 1 ~~I~Nvvas~~l~~~idL~~la~~~~n~~Y~P~~fpgl~~R~~~p~~t~~If~sGKivitGaks~~~~~~a~~~i~~~L~ 80 (176)
++|+|||||++++|+|||++||..++|++|||++|||++||+++|+++++||+||||+||||+|+++++.|+++++++|+
T Consensus 9 ~~I~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~P~~t~lIF~SGKiv~TGakS~~~~~~a~~~i~~~L~ 88 (182)
T 1ais_A 9 LRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQKLK 88 (182)
T ss_dssp EEEEEEEEEEECCSCCCHHHHTTTSTTCBCCTTTCSSEEEECSSSCCEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEEEcCCeeCHHHHHhhCCCcEECCCccccEEEEcCCCcEEEEEeCCCeEEEecCCCHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCC-cccceeeeeeEEEEeeeCcccCHHHHHHHcCCCcccCCCCCceeEEEEcCCeEEEEEeccceEEEEecCCHHHH
Q psy2814 81 QLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSEL 159 (176)
Q Consensus 81 ~~g~~-~~~~~~~i~nIvas~~l~~~i~L~~l~~~~~~~~~YePe~fpgl~~r~~~~~~t~~IF~sGkivitGaks~~~~ 159 (176)
++|++ .++.+|+|+|||||++++++|||++|+..+ ++++||||+||||+||+.+|+++++||+||||+||||||++++
T Consensus 89 ~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~-~~~~YePe~fpgli~R~~~pk~~~lIF~SGKiviTGaks~~~~ 167 (182)
T 1ais_A 89 SIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTL-PNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADA 167 (182)
T ss_dssp HTTCCCSSSCEEEEEEEEEEEECSSCCCHHHHHHHS-TTEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHH
T ss_pred HcCCCcccccceEEEEEEEEEEcCCccCHHHHHhhC-CCCEECCccCceEEEEeCCCcEEEEEecCCEEEEEecCCHHHH
Confidence 99998 578999999999999999999999999764 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy2814 160 HEAFDNIYPVLKSF 173 (176)
Q Consensus 160 ~~a~~~i~~~L~~~ 173 (176)
++|+++++|+|++|
T Consensus 168 ~~a~~~i~~~L~~~ 181 (182)
T 1ais_A 168 WEAVRKLLRELDKY 181 (182)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999886
No 6
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=100.00 E-value=7.1e-66 Score=414.10 Aligned_cols=174 Identities=39% Similarity=0.667 Sum_probs=169.4
Q ss_pred CeEEEEEEEEEeCCccChhhHhhcCCCcEEccCCCceEEEEEcCCeEEEEEecCccEEEEcccCHHHHHHHHHHHHHHHH
Q psy2814 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 80 (176)
Q Consensus 1 ~~I~Nvvas~~l~~~idL~~la~~~~n~~Y~P~~fpgl~~R~~~p~~t~~If~sGKivitGaks~~~~~~a~~~i~~~L~ 80 (176)
++|+|||||++++|+|||++||..++|++|||++|||++||+++|+++++||+||||+||||+|+++++.|+++++++|+
T Consensus 13 ~~I~NvVas~~l~~~ldL~~la~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGakS~e~a~~a~~~i~~~L~ 92 (198)
T 1mp9_A 13 VNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLK 92 (198)
T ss_dssp EEEEEEEEEEECCSCCCHHHHHHHSTTCBCCTTTCSSEEEEETTTTEEEEECTTSEEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEEEcCCcccHHHHHhhCCCCEECCccccceEEEcCCCceEEEEeCCCeEEEeccCCHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCC-cccceeeeeeEEEEeeeCcccCHHHHHHHcCCCcccCCCCCceeEEEEcCCeEEEEEeccceEEEEecCCHHHH
Q psy2814 81 QLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSEL 159 (176)
Q Consensus 81 ~~g~~-~~~~~~~i~nIvas~~l~~~i~L~~l~~~~~~~~~YePe~fpgl~~r~~~~~~t~~IF~sGkivitGaks~~~~ 159 (176)
++|++ .++.+|+|+|||||++++++|||++|+.. .++++||||+||||+||+.+|+++++||+||||+||||||++++
T Consensus 93 ~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~-~~~~~YePe~fPgliyR~~~Pk~t~lIF~SGKiviTGaks~~~~ 171 (198)
T 1mp9_A 93 KYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFL-LENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDEV 171 (198)
T ss_dssp HTTCCCSSCCEEEEEEEEEEEECSSEECHHHHHHH-SSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHH
T ss_pred HcCCcccCcCceEEEEEEEEeeCCCccCHHHHHhh-cCCcEECCccCCeEEEEeCCCcEEEEEeCCCEEEEEecCCHHHH
Confidence 99998 68899999999999999999999999976 48999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q psy2814 160 HEAFDNIYPVLKSFKK 175 (176)
Q Consensus 160 ~~a~~~i~~~L~~~r~ 175 (176)
+.|+++|+|+|++++.
T Consensus 172 ~~A~~~i~~~L~~~~~ 187 (198)
T 1mp9_A 172 HKAVKKIFDKLVELDC 187 (198)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999999874
No 7
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=100.00 E-value=4e-34 Score=235.04 Aligned_cols=122 Identities=22% Similarity=0.268 Sum_probs=82.8
Q ss_pred EEEEecCccEEEEcccCHHHHHHHHHHHHHHHHhcCCCcccceeeeeeEEEEeeeCcccCHHHHHHHcCCCcccCCCCCc
Q psy2814 48 TCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFP 127 (176)
Q Consensus 48 t~~If~sGKivitGaks~~~~~~a~~~i~~~L~~~g~~~~~~~~~i~nIvas~~l~~~i~L~~l~~~~~~~~~YePe~fp 127 (176)
--+=|+|||+++||++|.+++++++ +.++++|++....+++|+||||+++++++|||++|+... ++++||||+||
T Consensus 26 ~~~~f~sGk~~~s~~~s~~~~~~~~----~~~~~~~~~~~~~~~~I~NIVas~~l~~~ldL~~ia~~~-~n~eYePe~Fp 100 (240)
T 1rm1_A 26 WENQNRDGTKPATTFQSEEDIKRAA----PESEKDTSATSGIVPTLQNIVATVTLGCRLDLKTVALHA-RNAEYNPKRFA 100 (240)
T ss_dssp ---------------------------------------CCCCCEEEEEEEEEECCSCCCHHHHHHHB-TTEEECTTTCS
T ss_pred ccccCCCCcceecccccHHHHHHHH----HHHHhhccCcCCCceEEEEEEEEEEcCCccCHHHHHhhC-CCcEEcCcccc
Confidence 3467999999999998888876664 566777777777789999999999999999999999654 78999999999
Q ss_pred eeEEEEcCCeEEEEEeccceEEEEecCCHHHHHHHHHHHHHHHHhhh
Q psy2814 128 GLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174 (176)
Q Consensus 128 gl~~r~~~~~~t~~IF~sGkivitGaks~~~~~~a~~~i~~~L~~~r 174 (176)
||+||+.+|+++++||+||||+||||||+++++.|+++++++|+++.
T Consensus 101 gli~Rl~~Pk~t~lIF~SGKiV~TGaks~e~a~~A~~~i~~~L~~lg 147 (240)
T 1rm1_A 101 AVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIG 147 (240)
T ss_dssp EEEEEEETTEEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999998863
No 8
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=99.96 E-value=1.2e-29 Score=202.08 Aligned_cols=84 Identities=36% Similarity=0.593 Sum_probs=81.3
Q ss_pred CeEEEEEEEEEeCCccChhhHhhcCCCcEEccCCCceEEEEEcCCeEEEEEecCccEEEEcccCHHHHHHHHHHHHHHHH
Q psy2814 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 80 (176)
Q Consensus 1 ~~I~Nvvas~~l~~~idL~~la~~~~n~~Y~P~~fpgl~~R~~~p~~t~~If~sGKivitGaks~~~~~~a~~~i~~~L~ 80 (176)
++|+|||||++++++|||+.||...+|++||||+||||+||+++|+++++||+||||+||||||+++++.|+++++++|+
T Consensus 104 ~~I~NIVas~~l~~~i~L~~la~~~~~~eYePe~fPgliyR~~~Pk~t~lIF~SGKiviTGaks~~~~~~A~~~i~~~L~ 183 (188)
T 2z8u_A 104 IKIQNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALKKILDTIK 183 (188)
T ss_dssp CEEEEEEEEEECSSCCCHHHHHHHSTTEEECTTTSSSEEEEEETTEEEEEECTTSEEEEESCSCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEEecCCccCHHHHHhhCcCcEECCccCceEEEEeCCCcEEEEEeCCCEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC
Q psy2814 81 QLGH 84 (176)
Q Consensus 81 ~~g~ 84 (176)
++|+
T Consensus 184 ~~~~ 187 (188)
T 2z8u_A 184 EVQE 187 (188)
T ss_dssp HHC-
T ss_pred Hhcc
Confidence 9874
No 9
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=99.96 E-value=3.1e-29 Score=201.16 Aligned_cols=85 Identities=31% Similarity=0.502 Sum_probs=82.8
Q ss_pred CeEEEEEEEEEeCCccChhhHhhcCCCcEEccCCCceEEEEEcCCeEEEEEecCccEEEEcccCHHHHHHHHHHHHHHHH
Q psy2814 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 80 (176)
Q Consensus 1 ~~I~Nvvas~~l~~~idL~~la~~~~n~~Y~P~~fpgl~~R~~~p~~t~~If~sGKivitGaks~~~~~~a~~~i~~~L~ 80 (176)
++|+|||||++++++|||+.||...+|++||||+||||+||+++|+++++||+||||+||||||+++++.|+++++++|+
T Consensus 104 ~~I~NIVas~~l~~~i~L~~la~~~~~~~YePe~fPgliyR~~~Pk~t~lIF~SGKiviTGaks~~~~~~A~~~i~~~L~ 183 (198)
T 1mp9_A 104 IQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDEVHKAVKKIFDKLV 183 (198)
T ss_dssp EEEEEEEEEEECSSEECHHHHHHHSSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEeeCCCccCHHHHHhhcCCcEECCccCCeEEEEeCCCcEEEEEeCCCEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCC
Q psy2814 81 QLGHP 85 (176)
Q Consensus 81 ~~g~~ 85 (176)
++|+.
T Consensus 184 ~~~~~ 188 (198)
T 1mp9_A 184 ELDCV 188 (198)
T ss_dssp HTTCE
T ss_pred HhCCC
Confidence 99975
No 10
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=99.96 E-value=4.7e-29 Score=197.81 Aligned_cols=82 Identities=33% Similarity=0.535 Sum_probs=79.6
Q ss_pred CeEEEEEEEEEeCCccChhhHhhcCCCcEEccCCCceEEEEEcCCeEEEEEecCccEEEEcccCHHHHHHHHHHHHHHHH
Q psy2814 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILK 80 (176)
Q Consensus 1 ~~I~Nvvas~~l~~~idL~~la~~~~n~~Y~P~~fpgl~~R~~~p~~t~~If~sGKivitGaks~~~~~~a~~~i~~~L~ 80 (176)
++|+|||||++++++|||+.||...+|++||||+||||+||+++|+++++||+||||+|||+||+++++.|+++++++|+
T Consensus 100 ~~I~NIVas~~l~~~i~L~~la~~~~~~~YePe~fpgli~R~~~pk~~~lIF~SGKiviTGaks~~~~~~a~~~i~~~L~ 179 (182)
T 1ais_A 100 IDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELD 179 (182)
T ss_dssp EEEEEEEEEEECSSCCCHHHHHHHSTTEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred eEEEEEEEEEEcCCccCHHHHHhhCCCCEECCccCceEEEEeCCCcEEEEEecCCEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hc
Q psy2814 81 QL 82 (176)
Q Consensus 81 ~~ 82 (176)
++
T Consensus 180 ~~ 181 (182)
T 1ais_A 180 KY 181 (182)
T ss_dssp TC
T ss_pred Hh
Confidence 74
No 11
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=99.95 E-value=3.3e-28 Score=192.58 Aligned_cols=84 Identities=26% Similarity=0.453 Sum_probs=79.9
Q ss_pred eeeeeeEEEEeeeCcccCHHHHHHHcCCCcccCCCCCceeEEEEcCCeEEEEEeccceEEEEecCCHHHHHHHHHHHHHH
Q psy2814 90 GFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPV 169 (176)
Q Consensus 90 ~~~i~nIvas~~l~~~i~L~~l~~~~~~~~~YePe~fpgl~~r~~~~~~t~~IF~sGkivitGaks~~~~~~a~~~i~~~ 169 (176)
.++|+|||||++++++|||++++.. .++++||||+||||+||+.+|+++++||+||||+||||||+++++.|+++++++
T Consensus 4 ~~~I~NiVas~~l~~~ldL~~ia~~-~~n~eYePe~fpgli~R~~~Pk~~~lIF~SGKiv~TGaks~e~~~~a~~~i~~~ 82 (180)
T 1ytb_A 4 VPTLQNIVATVTLGCRLDLKTVALH-ARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARI 82 (180)
T ss_dssp CCEEEEEEEEEECCSCCCHHHHHHH-SSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEEEcCCccCHHHHHhh-CCCCEECccccCCEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999965 478999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh
Q psy2814 170 LKSFK 174 (176)
Q Consensus 170 L~~~r 174 (176)
|+++-
T Consensus 83 L~~lg 87 (180)
T 1ytb_A 83 IQKIG 87 (180)
T ss_dssp HHHHT
T ss_pred HHHcC
Confidence 98763
No 12
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=99.94 E-value=1.9e-26 Score=186.77 Aligned_cols=84 Identities=26% Similarity=0.449 Sum_probs=79.7
Q ss_pred ceeeeeeEEEEeeeCcccCHHHHHHHcCCCcccCCCCCceeEEEEcCCeEEEEEeccceEEEEecCCHHHHHHHHHHHHH
Q psy2814 89 QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYP 168 (176)
Q Consensus 89 ~~~~i~nIvas~~l~~~i~L~~l~~~~~~~~~YePe~fpgl~~r~~~~~~t~~IF~sGkivitGaks~~~~~~a~~~i~~ 168 (176)
..++|+||||+++++++|||++|+... ++++||||+||||+||+.+|+++++||+||||+||||||+++++.|++++.+
T Consensus 41 i~~~I~NIVas~~l~~~ldL~~ia~~~-~n~eYePe~Fpglv~Rl~~Pk~t~LIF~SGKiV~TGAkS~e~a~~A~~ki~~ 119 (218)
T 3eik_A 41 IIPTLQNVVATVNLSCKLDLKNIALRA-RNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAKSEKSSRMAAQRYAK 119 (218)
T ss_dssp CSCEEEEEEEEEECSSCCCHHHHHHHC-TTEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEEECCCccCHHHHHhhC-CCcEEcCccCceEEEEecCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHH
Confidence 457899999999999999999999754 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q psy2814 169 VLKSF 173 (176)
Q Consensus 169 ~L~~~ 173 (176)
+|++.
T Consensus 120 ~L~~l 124 (218)
T 3eik_A 120 IIHKL 124 (218)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 99874
No 13
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A
Probab=94.27 E-value=0.041 Score=46.28 Aligned_cols=36 Identities=22% Similarity=0.557 Sum_probs=30.7
Q ss_pred CCCceeEEEEcCCeEEEEEeccceEEEEecCCHHHH
Q psy2814 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSEL 159 (176)
Q Consensus 124 e~fpgl~~r~~~~~~t~~IF~sGkivitGaks~~~~ 159 (176)
..-|+..|+...+.+++.+|.|||+++.|...+..+
T Consensus 27 ~~~~~~~f~~k~~~~~it~Y~SGkv~~qG~~a~~~~ 62 (310)
T 2d0b_A 27 RLPAGALFAVKRPDVVITAYRSGKVLFQGKAAEQEA 62 (310)
T ss_dssp SCCTTEEEEECCTTCEEEEETTSEEEEESTTHHHHH
T ss_pred CCCCCeEEEecCCCeEEEEEeCCEEEEeCCchHHHH
Confidence 445899999999999999999999999998654433
No 14
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus}
Probab=93.49 E-value=0.035 Score=45.56 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=31.0
Q ss_pred CCCCceeEEEEcCCeEEEEEeccceEEEEecCCHHHH
Q psy2814 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSEL 159 (176)
Q Consensus 123 Pe~fpgl~~r~~~~~~t~~IF~sGkivitGaks~~~~ 159 (176)
+..-|+..|+...+.+|+++|.|||+++.|...+..+
T Consensus 25 ~~~~~~~~f~~k~~~~~it~Y~SGkv~fqG~~a~~~a 61 (257)
T 3vn5_A 25 KINAPYTLWALEGNGVKVYYYKTGSLLIQGKNSEKVL 61 (257)
T ss_dssp ECCCTTCSEEEEETTEEEEECTTSEEEEESTTHHHHH
T ss_pred ccCCCceEEEEecCCeEEEEEeccEEEEeCCCHHHHH
Confidence 4456899999999999999999999999999654443
No 15
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A
Probab=93.48 E-value=0.069 Score=44.88 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=31.0
Q ss_pred CCCceEEEEEcCCeEEEEEecCccEEEEcccCHHHHH
Q psy2814 33 GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCK 69 (176)
Q Consensus 33 ~~fpgl~~R~~~p~~t~~If~sGKivitGaks~~~~~ 69 (176)
..-|+..++.+.+.+++++|.|||++..|..+++.+.
T Consensus 27 ~~~~~~~f~~k~~~~~it~Y~SGkv~~qG~~a~~~~~ 63 (310)
T 2d0b_A 27 RLPAGALFAVKRPDVVITAYRSGKVLFQGKAAEQEAA 63 (310)
T ss_dssp SCCTTEEEEECCTTCEEEEETTSEEEEESTTHHHHHH
T ss_pred CCCCCeEEEecCCCeEEEEEeCCEEEEeCCchHHHHH
Confidence 3348999999999999999999999999986554443
No 16
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus}
Probab=93.39 E-value=0.02 Score=47.04 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=31.7
Q ss_pred cCCCceEEEEEcCCeEEEEEecCccEEEEcccCHHHHHH
Q psy2814 32 PGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKL 70 (176)
Q Consensus 32 P~~fpgl~~R~~~p~~t~~If~sGKivitGaks~~~~~~ 70 (176)
+..-|+..++.+.+.+++++|.|||+++.|...++.+..
T Consensus 25 ~~~~~~~~f~~k~~~~~it~Y~SGkv~fqG~~a~~~a~~ 63 (257)
T 3vn5_A 25 KINAPYTLWALEGNGVKVYYYKTGSLLIQGKNSEKVLKE 63 (257)
T ss_dssp ECCCTTCSEEEEETTEEEEECTTSEEEEESTTHHHHHHH
T ss_pred ccCCCceEEEEecCCeEEEEEeccEEEEeCCCHHHHHHH
Confidence 344578899999999999999999999999965554443
No 17
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=91.40 E-value=3.2 Score=30.49 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=54.1
Q ss_pred EEEEcccCHHHHHHHHHHHHHHHHhcCCCcccceeeeeeEEEEeeeCcc----------cCHHHHHHHcCCCcccCCCCC
Q psy2814 57 LLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFP----------VKLDALHHVHSQFSSYEPELF 126 (176)
Q Consensus 57 ivitGaks~~~~~~a~~~i~~~L~~~g~~~~~~~~~i~nIvas~~l~~~----------i~L~~l~~~~~~~~~YePe~f 126 (176)
+.++| +.+.+..|...+...+.+.++.-...+. ...+...++.. =++.+|....+-...-+++.-
T Consensus 51 v~I~G--~~e~v~~A~~~I~~~~~e~~~~~~~~~~---~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~ 125 (163)
T 3krm_A 51 VIITG--PPEAQFKAQGRIYGKLKEENFFGPKEEV---KLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQT 125 (163)
T ss_dssp EEEEE--CHHHHHHHHHHHHHHHHHTTSSCSSCCC---CEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCC
T ss_pred EEEEc--CHHHHHHHHHHHHHHHhcccccccccCC---ceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCC
Confidence 88888 6899999999999999887532111111 11112222211 012222222221122221111
Q ss_pred ceeEEEEcCCeEEEEEeccc--eEEEEecCCHHHHHHHHHHHHHHHHhhhcC
Q psy2814 127 PGLIYRMVKPRVVLLIFVNG--RIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176 (176)
Q Consensus 127 pgl~~r~~~~~~t~~IF~sG--kivitGaks~~~~~~a~~~i~~~L~~~r~~ 176 (176)
|+ .++ .|.|+| +.+.++.|...|..++.+.+.+
T Consensus 126 ~~---------------~~~~~~v~I~G--~~~~v~~A~~~I~~~i~~~~~~ 160 (163)
T 3krm_A 126 PD---------------ENDQVIVKIIG--HFYASQMAQRKIRDILAQVKQQ 160 (163)
T ss_dssp CC---------------TTSEEEEEEEE--CHHHHHHHHHHHHHHHHHHTC-
T ss_pred CC---------------CCCceEEEEEe--CHHHHHHHHHHHHHHHHHHHHh
Confidence 10 122 578999 5899999999999999988753
No 18
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=83.23 E-value=9.1 Score=27.88 Aligned_cols=99 Identities=12% Similarity=0.104 Sum_probs=54.1
Q ss_pred cEEEEcccCHHHHHHHHHHHHHHHHhcC---CCc----ccceeeeeeEEEEeeeCc-----ccCHHHHHHHcCCCcccCC
Q psy2814 56 KLLILGAKHEHDCKLASRKFAKILKQLG---HPI----KYQGFKIHNIVCTCDVRF-----PVKLDALHHVHSQFSSYEP 123 (176)
Q Consensus 56 KivitGaks~~~~~~a~~~i~~~L~~~g---~~~----~~~~~~i~nIvas~~l~~-----~i~L~~l~~~~~~~~~YeP 123 (176)
.+.++|. .+++..|...+...+.+.. .+. ........-.+-.-..+. .-.+.+|....+-....++
T Consensus 49 ~v~I~G~--~~~v~~A~~~I~~~i~e~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~ 126 (160)
T 2jzx_A 49 IITLAGP--TNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG 126 (160)
T ss_dssp EEEEEEE--HHHHHHHHHHHHHHHHHHHTSCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCC
T ss_pred EEEEEeC--HHHHHHHHHHHHHHHHhhccccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECC
Confidence 6888886 6788888888887776531 110 001111111111101110 1123444443333344444
Q ss_pred CCCceeEEEEcCCeEEEEEeccceEEEEecCCHHHHHHHHHHHHHHHHh
Q psy2814 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKS 172 (176)
Q Consensus 124 e~fpgl~~r~~~~~~t~~IF~sGkivitGaks~~~~~~a~~~i~~~L~~ 172 (176)
+.+|+- ..+.|.|+| +++.++.|...|..++.+
T Consensus 127 ~~~~~~--------------~~~~v~I~G--~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 127 DMLPNS--------------TERAITIAG--IPQSIIECVKQICVVMLE 159 (160)
T ss_dssp CCSTTC--------------CEEEEEEEE--CHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC--------------CceEEEEEc--CHHHHHHHHHHHHHHHhc
Confidence 434421 257889999 589999999999988876
No 19
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=81.02 E-value=0.9 Score=34.59 Aligned_cols=34 Identities=15% Similarity=0.308 Sum_probs=28.2
Q ss_pred eEEEEEeccceEE-----------EEecCC-HHHHHHHHHHHHHHH
Q psy2814 137 RVVLLIFVNGRIV-----------ITGAKS-RSELHEAFDNIYPVL 170 (176)
Q Consensus 137 ~~t~~IF~sGkiv-----------itGaks-~~~~~~a~~~i~~~L 170 (176)
-.|+.+|..|+.+ +.|+.+ .+++.+.++.+++--
T Consensus 96 iPT~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a 141 (160)
T 2av4_A 96 PVSVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGA 141 (160)
T ss_dssp SEEEEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHh
Confidence 3689999999997 779976 889999988887653
No 20
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=77.74 E-value=2.6 Score=29.31 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=31.9
Q ss_pred CceeEEEEcCCeEEEEEeccceEEEEecCCHHHHHHHHHHHHHHHHhhhc
Q psy2814 126 FPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175 (176)
Q Consensus 126 fpgl~~r~~~~~~t~~IF~sGkivitGaks~~~~~~a~~~i~~~L~~~r~ 175 (176)
|+++...+.+ .++.|+|+|. .+++..|...|..++.+++.
T Consensus 56 ~~~v~I~fp~--------~~~~ItI~G~--~~~V~~a~~~I~~~v~el~~ 95 (102)
T 2ctf_A 56 MPKVHIEFTE--------GEDKITLEGP--TEDVSVAQEQIEGMVKDLIN 95 (102)
T ss_dssp CSSSEEEECS--------SSCEEEEEEC--HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEeCC--------CCCEEEEECC--HHHHHHHHHHHHHHHHHHHh
Confidence 4566555554 5789999998 88999999999999888764
No 21
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=73.70 E-value=3.3 Score=27.43 Aligned_cols=29 Identities=21% Similarity=0.539 Sum_probs=23.0
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIY 167 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~ 167 (176)
|+.+|.+|+++ ..|..+.+++.+.++.++
T Consensus 80 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 110 (112)
T 1t00_A 80 TLNVYQGGEVAKTIVGAKPKAAIVRDLEDFI 110 (112)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHTHHHH
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 56678889886 789999999888877654
No 22
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=71.84 E-value=6 Score=26.11 Aligned_cols=33 Identities=18% Similarity=0.463 Sum_probs=28.1
Q ss_pred eEEEEEeccce--------EEEEecCCHHHHHHHHHHHHHHHH
Q psy2814 137 RVVLLIFVNGR--------IVITGAKSRSELHEAFDNIYPVLK 171 (176)
Q Consensus 137 ~~t~~IF~sGk--------ivitGaks~~~~~~a~~~i~~~L~ 171 (176)
.+.+.|-.+|. |.|+| +++.++.|.+.|..++.
T Consensus 44 ga~I~i~~~~~~~~~~er~v~I~G--~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 44 GVKMILIQDGSQNTNVDKPLRIIG--DPYKVQQACEMVMDILR 84 (85)
T ss_dssp TCEEEECSSSCSSTTSCEEEEEEE--CHHHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCCCCCCCCceEEEEEe--CHHHHHHHHHHHHHHhc
Confidence 56777888888 99999 78999999999988765
No 23
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=71.84 E-value=5 Score=25.93 Aligned_cols=28 Identities=32% Similarity=0.548 Sum_probs=22.1
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNI 166 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i 166 (176)
|+.+|.+|+++ ..|..+.+++.+.++++
T Consensus 75 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 75 TVLFFKNGERKESIIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHhh
Confidence 46677888875 67999999998887764
No 24
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=71.74 E-value=6.4 Score=25.64 Aligned_cols=29 Identities=38% Similarity=0.591 Sum_probs=22.0
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIY 167 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~ 167 (176)
|+.+|.+|+++ ..|..+.+++.+.++.++
T Consensus 77 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 107 (108)
T 2trx_A 77 TLLLFKNGEVAATKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEecCCCHHHHHHHHHHhh
Confidence 45566888875 689989999888877653
No 25
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=70.53 E-value=7.6 Score=25.34 Aligned_cols=29 Identities=17% Similarity=0.433 Sum_probs=22.9
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIY 167 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~ 167 (176)
|+.+|..|+.+ ..|..+.+++.+.++.++
T Consensus 79 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 109 (111)
T 3gnj_A 79 QILYFKDGEYKGKMAGDVEDDEVEQMIADVL 109 (111)
T ss_dssp EEEEEETTEEEEEEESSCCHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeccCCHHHHHHHHHHHh
Confidence 46677888875 779999999988887764
No 26
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=70.50 E-value=6.4 Score=25.61 Aligned_cols=28 Identities=18% Similarity=0.506 Sum_probs=22.4
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNI 166 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i 166 (176)
|+.+|.+|+++ ..|..+.+++.+.++.+
T Consensus 76 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 105 (107)
T 1dby_A 76 TIMVFKGGKKCETIIGAVPKATIVQTVEKY 105 (107)
T ss_dssp EEEEESSSSEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 56678889885 67999999988888765
No 27
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=69.69 E-value=5.8 Score=26.08 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=22.6
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIY 167 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~ 167 (176)
++.+|++|+++ ..|..+.+++.+.++.+.
T Consensus 82 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l 112 (115)
T 1thx_A 82 ALRLVKGEQILDSTEGVISKDKLLSFLDTHL 112 (115)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEcCCEEEEEecCCCCHHHHHHHHHHHh
Confidence 55666888876 679989999988887664
No 28
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=69.39 E-value=7.2 Score=27.02 Aligned_cols=29 Identities=38% Similarity=0.591 Sum_probs=22.4
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIY 167 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~ 167 (176)
|+.+|.+|+++ ..|..+.+++.+.+++++
T Consensus 97 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 97 TLLLFKNGEVAATKVGALSKGQLKEFLDANL 127 (128)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence 45566888876 789999999988887653
No 29
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=68.83 E-value=7.2 Score=24.86 Aligned_cols=29 Identities=31% Similarity=0.558 Sum_probs=22.5
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIY 167 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~ 167 (176)
++.+|++|+++ ..|..+.+++.+.+++++
T Consensus 72 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 102 (104)
T 2e0q_A 72 TVIFFKDGEPVDEIIGAVPREEIEIRIKNLL 102 (104)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEECCeEhhhccCCCCHHHHHHHHHHHh
Confidence 56677888884 679889999888887664
No 30
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=68.31 E-value=6 Score=25.63 Aligned_cols=29 Identities=34% Similarity=0.623 Sum_probs=22.4
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIY 167 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~ 167 (176)
++.+|.+|+++ ..|..+.+++.+.++.++
T Consensus 78 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 78 TTLIFVNGQLVDSLVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred EEEEEcCCcEEEeeeccCCHHHHHHHHHHHh
Confidence 45667888876 679989999988887653
No 31
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=67.76 E-value=8.4 Score=25.99 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=22.3
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIY 167 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~ 167 (176)
++.+|++|+++ ..|..+.+++.+.+++++
T Consensus 88 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 118 (119)
T 1w4v_A 88 TVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI 118 (119)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence 56677888875 679888999888877653
No 32
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=66.75 E-value=8.9 Score=25.87 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=25.5
Q ss_pred cceEEEEecCCHHHHHHHHHHHHHHHHhhhc
Q psy2814 145 NGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175 (176)
Q Consensus 145 sGkivitGaks~~~~~~a~~~i~~~L~~~r~ 175 (176)
+|.|+|+|. ++.+..|.+.|..++.+..+
T Consensus 59 ~~~V~I~G~--~e~v~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 59 SNQIKITGT--KEGIEKARHEVLLISAEQDK 87 (94)
T ss_dssp CCEEEEEEC--HHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEC--HHHHHHHHHHHHHHhhcccc
Confidence 689999997 89999999999999887654
No 33
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=66.40 E-value=7.2 Score=25.20 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=20.8
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDN 165 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~ 165 (176)
++.+|++|+++ ..|..+.+++.+.+++
T Consensus 77 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 105 (107)
T 2i4a_A 77 TLMLVRDGKVIDKKVGALPKSQLKAWVES 105 (107)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEecCCCCHHHHHHHHHh
Confidence 55667888886 6798888888877765
No 34
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=66.21 E-value=9.5 Score=26.62 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=26.5
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIYPVLK 171 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~~~L~ 171 (176)
|+.+|.+|+++ ..|..+.+++.+.++.+++.-.
T Consensus 81 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~~ 115 (140)
T 3hz4_A 81 TFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQHGE 115 (140)
T ss_dssp EEEEEETTEEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCCCHHHHHHHHHHHhcccc
Confidence 57778889884 7899999999999988876533
No 35
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=65.70 E-value=7.1 Score=28.12 Aligned_cols=30 Identities=23% Similarity=0.496 Sum_probs=21.4
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIYP 168 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~~ 168 (176)
|+.+|+.|+++ +.|+.+.+++.+.++.++.
T Consensus 94 T~~~fk~G~~v~~~~G~~~~~~l~~~i~~~l~ 125 (142)
T 2es7_A 94 ATLVFTDGKLRGALSGIHPWAELLTLMRSIVD 125 (142)
T ss_dssp EEEEESCC----CEESCCCHHHHHHHHHHHHC
T ss_pred eEEEEeCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 56677889875 7899999999888877653
No 36
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=65.60 E-value=12 Score=26.81 Aligned_cols=33 Identities=21% Similarity=0.428 Sum_probs=27.0
Q ss_pred EEEEeccceEE-----------EEe-cCCHHHHHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV-----------ITG-AKSRSELHEAFDNIYPVLK 171 (176)
Q Consensus 139 t~~IF~sGkiv-----------itG-aks~~~~~~a~~~i~~~L~ 171 (176)
|+.+|..|+++ +.| ..+.+++.+.++.++...+
T Consensus 80 t~~~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~~ 124 (149)
T 3gix_A 80 STVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAM 124 (149)
T ss_dssp EEEEEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHhh
Confidence 34488888888 899 8999999999999886654
No 37
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=65.33 E-value=9.8 Score=25.04 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=27.5
Q ss_pred eEEEEEecCcc--------EEEEcccCHHHHHHHHHHHHHHHH
Q psy2814 46 RTTCLAFQSGK--------LLILGAKHEHDCKLASRKFAKILK 80 (176)
Q Consensus 46 ~~t~~If~sGK--------ivitGaks~~~~~~a~~~i~~~L~ 80 (176)
.+.+.|-.+|. +.|+| +.+.+..|.+.+..+++
T Consensus 44 ga~I~i~~~~~~~~~~er~v~I~G--~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 44 GVKMILIQDGSQNTNVDKPLRIIG--DPYKVQQACEMVMDILR 84 (85)
T ss_dssp TCEEEECSSSCSSTTSCEEEEEEE--CHHHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCCCCCCCCceEEEEEe--CHHHHHHHHHHHHHHhc
Confidence 46888888998 99999 88899988888877764
No 38
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=64.78 E-value=4.9 Score=26.01 Aligned_cols=29 Identities=17% Similarity=0.507 Sum_probs=22.1
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIY 167 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~ 167 (176)
++.+|.+|+++ ..|..+.+++.+.++.++
T Consensus 75 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 105 (109)
T 2yzu_A 75 TVILFKDGQPVEVLVGAQPKRNYQAKIEKHL 105 (109)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHTTC
T ss_pred EEEEEeCCcEeeeEeCCCCHHHHHHHHHHHh
Confidence 55667888875 679988988888877654
No 39
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=64.41 E-value=10 Score=26.29 Aligned_cols=29 Identities=31% Similarity=0.444 Sum_probs=22.6
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIY 167 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~ 167 (176)
|+.+|.+|+++ ..|..+.+++.+.++.++
T Consensus 107 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l 137 (140)
T 1v98_A 107 TLVLFRRGAPVATWVGASPRRVLEERLRPYL 137 (140)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence 56677888876 789988888888877654
No 40
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=64.04 E-value=11 Score=24.42 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=23.1
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHHH
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRKF 75 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~i 75 (176)
.|+.+|.+|+++ ..|..+.++....++++
T Consensus 75 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 105 (107)
T 1dby_A 75 PTIMVFKGGKKCETIIGAVPKATIVQTVEKY 105 (107)
T ss_dssp CEEEEESSSSEEEEEESCCCHHHHHHHHHHH
T ss_pred CEEEEEeCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 367788999986 67999988888777664
No 41
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=63.65 E-value=12 Score=24.40 Aligned_cols=30 Identities=13% Similarity=0.263 Sum_probs=24.3
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHHHH
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRKFA 76 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~i~ 76 (176)
.|+.+|.+|+.+ ..|..+.+++...+++++
T Consensus 78 Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 109 (111)
T 3gnj_A 78 PQILYFKDGEYKGKMAGDVEDDEVEQMIADVL 109 (111)
T ss_dssp CEEEEEETTEEEEEEESSCCHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEEeccCCHHHHHHHHHHHh
Confidence 477888999986 779999998888877654
No 42
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=63.59 E-value=8.5 Score=25.27 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=23.3
Q ss_pred EEEEecCccEE--EEcccCHHHHHHHHHHHH
Q psy2814 48 TCLAFQSGKLL--ILGAKHEHDCKLASRKFA 76 (176)
Q Consensus 48 t~~If~sGKiv--itGaks~~~~~~a~~~i~ 76 (176)
|+.+|.+|+++ ..|..+.+++...+++++
T Consensus 80 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 110 (112)
T 1t00_A 80 TLNVYQGGEVAKTIVGAKPKAAIVRDLEDFI 110 (112)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHTHHHH
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 67788999986 789999888887766543
No 43
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=63.35 E-value=11 Score=27.76 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=25.3
Q ss_pred EEEEEeccceE--EEEecCCHHHHHHHHHHHH
Q psy2814 138 VVLLIFVNGRI--VITGAKSRSELHEAFDNIY 167 (176)
Q Consensus 138 ~t~~IF~sGki--vitGaks~~~~~~a~~~i~ 167 (176)
-|+.+|+.|++ .+.|+.+.+++.+.++.++
T Consensus 93 PTlilFk~G~~v~~~~G~~~k~~l~~~i~~~l 124 (140)
T 2qgv_A 93 PATLVFTGGNYRGVLNGIHPWAELINLMRGLV 124 (140)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEEecCCCHHHHHHHHHHHh
Confidence 48999999999 5789999999988887654
No 44
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=63.10 E-value=11 Score=24.40 Aligned_cols=29 Identities=24% Similarity=0.226 Sum_probs=22.7
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHHH
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRKF 75 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~i 75 (176)
.++.+|.+|+++ ..|..+.+++...++++
T Consensus 76 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 106 (108)
T 2trx_A 76 PTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106 (108)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred CEEEEEeCCEEEEEEecCCCHHHHHHHHHHh
Confidence 367778999986 68998988888776654
No 45
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=63.02 E-value=10 Score=25.75 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=30.1
Q ss_pred eEEEEEeccc-----eEEEEecCCHHHHHHHHHHHHHHHHhhh
Q psy2814 137 RVVLLIFVNG-----RIVITGAKSRSELHEAFDNIYPVLKSFK 174 (176)
Q Consensus 137 ~~t~~IF~sG-----kivitGaks~~~~~~a~~~i~~~L~~~r 174 (176)
.+.+.|...| .|.|+|. .+.++.|.+.|..++.++.
T Consensus 47 g~~I~i~~~g~~~~~~V~I~G~--~e~v~~A~~~I~~i~~e~~ 87 (95)
T 2ctm_A 47 KVDIRFPQSGAPDPNCVTVTGL--PENVEEAIDHILNLEEEYL 87 (95)
T ss_dssp TCEEECCCTTCSCTTEEEEESC--HHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCCCCcEEEEEcC--HHHHHHHHHHHHHHHHHHH
Confidence 4667777788 8999997 5889999999999888765
No 46
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=62.94 E-value=12 Score=24.49 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=21.6
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIY 167 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~ 167 (176)
|+.+|.+|+++ ..|. +.+++.+.++.++
T Consensus 81 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l 110 (112)
T 1ep7_A 81 TFHVYKDGVKADDLVGA-SQDKLKALVAKHA 110 (112)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEcCC-CHHHHHHHHHHHh
Confidence 56778889874 6788 8888888877654
No 47
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=62.69 E-value=8.6 Score=24.79 Aligned_cols=27 Identities=22% Similarity=0.560 Sum_probs=21.3
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNI 166 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i 166 (176)
|+.+|.+|+.+ ..|. +.+++.+.++++
T Consensus 76 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 104 (105)
T 3m9j_A 76 TFQFFKKGQKVGEFSGA-NKEKLEATINEL 104 (105)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEeCC-CHHHHHHHHHHh
Confidence 56677888885 7788 899888887764
No 48
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=62.22 E-value=8.5 Score=24.87 Aligned_cols=30 Identities=30% Similarity=0.517 Sum_probs=23.7
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHHHH
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRKFA 76 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~i~ 76 (176)
.++.+|.+|+++ ..|..+.+++...+++++
T Consensus 77 Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 77 PTTLIFVNGQLVDSLVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred CEEEEEcCCcEEEeeeccCCHHHHHHHHHHHh
Confidence 467788999987 679989998888777653
No 49
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=61.56 E-value=14 Score=25.52 Aligned_cols=29 Identities=17% Similarity=0.445 Sum_probs=21.4
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIYP 168 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~~ 168 (176)
|+.+|.+|+++ ..| .+.+++.+.++.+++
T Consensus 93 t~~i~~~G~~~~~~~G-~~~~~l~~~l~~~l~ 123 (125)
T 1r26_A 93 TFIIARSGKMLGHVIG-ANPGMLRQKLRDIIK 123 (125)
T ss_dssp EEEEEETTEEEEEEES-SCHHHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEeC-CCHHHHHHHHHHHhc
Confidence 56678888875 678 478888888776653
No 50
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=61.11 E-value=12 Score=25.85 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=23.6
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHHHH
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRKFA 76 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~i~ 76 (176)
.|+.+|.+|+++ .+|..+.+++...+++++
T Consensus 96 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 96 PTLLLFKNGEVAATKVGALSKGQLKEFLDANL 127 (128)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CEEEEEeCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence 367777999986 789999988888776653
No 51
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=60.43 E-value=12 Score=23.89 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=22.6
Q ss_pred EEEEecCccEE--EEcccCHHHHHHHHHHH
Q psy2814 48 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 75 (176)
Q Consensus 48 t~~If~sGKiv--itGaks~~~~~~a~~~i 75 (176)
++.+|.+|+++ .+|..+.+++...++++
T Consensus 75 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 75 TVLFFKNGERKESIIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHhh
Confidence 67888999986 67999988888777654
No 52
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=60.28 E-value=13 Score=26.75 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=23.1
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIY 167 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~ 167 (176)
|+.+|.+|+++ ..|..+.+++.+.++.++
T Consensus 121 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 151 (155)
T 2ppt_A 121 AFILFHKGRELARAAGARPASELVGFVRGKL 151 (155)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEecCCCCHHHHHHHHHHHh
Confidence 56677899987 789989888888777654
No 53
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=60.28 E-value=9.2 Score=25.76 Aligned_cols=27 Identities=22% Similarity=0.560 Sum_probs=21.7
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNI 166 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i 166 (176)
|+.+|..|+++ +.|. +.+++.+.++++
T Consensus 87 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 115 (116)
T 3qfa_C 87 TFQFFKKGQKVGEFSGA-NKEKLEATINEL 115 (116)
T ss_dssp EEEEESSSSEEEEEESC-CHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEcCC-CHHHHHHHHHHh
Confidence 57788899886 6788 899998887764
No 54
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=60.16 E-value=13 Score=24.17 Aligned_cols=30 Identities=7% Similarity=-0.033 Sum_probs=23.2
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHHHH
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRKFA 76 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~i~ 76 (176)
.++.+|.+|+++ ..|..+.+++...++++.
T Consensus 81 Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l 112 (115)
T 1thx_A 81 PALRLVKGEQILDSTEGVISKDKLLSFLDTHL 112 (115)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEEEcCCEEEEEecCCCCHHHHHHHHHHHh
Confidence 367778999987 579989888887766553
No 55
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=60.13 E-value=8.2 Score=26.18 Aligned_cols=27 Identities=30% Similarity=0.559 Sum_probs=20.8
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNI 166 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i 166 (176)
|+.+|.+|+++ ..|. +.+++.+.++.+
T Consensus 91 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 119 (121)
T 2j23_A 91 TFVFFKNGQKIDTVVGA-DPSKLQAAITQH 119 (121)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEECCeEEeeEcCC-CHHHHHHHHHHh
Confidence 56677888875 6788 888888877765
No 56
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=60.01 E-value=14 Score=25.38 Aligned_cols=30 Identities=27% Similarity=0.556 Sum_probs=23.3
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIYPV 169 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~~~ 169 (176)
|+.+|.+|+++ ..|. +.+++.+.++.+.+.
T Consensus 102 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~~ 133 (139)
T 3d22_A 102 TFFFLRDGQQVDKLVGA-NKPELHKKITAILDS 133 (139)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHHHHT
T ss_pred EEEEEcCCeEEEEEeCC-CHHHHHHHHHHHhcc
Confidence 56677889886 6788 888998888877653
No 57
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=59.99 E-value=12 Score=25.26 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=18.9
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDN 165 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~ 165 (176)
|+.+|..|+.+ ++|+ +++++.+.+++
T Consensus 76 T~~~~~~G~~v~~~~G~-~~~~l~~~i~k 103 (105)
T 3zzx_A 76 TFLFMKNGQKLDSLSGA-NYDKLLELVEK 103 (105)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeCc-CHHHHHHHHHh
Confidence 67788899875 7786 77777666543
No 58
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=59.61 E-value=12 Score=26.26 Aligned_cols=30 Identities=17% Similarity=0.560 Sum_probs=23.7
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIYP 168 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~~ 168 (176)
|+.+|.+|+++ ..|..+.+++.+.++.++.
T Consensus 112 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~ 143 (148)
T 3p2a_A 112 TIMLYRNGKMIDMLNGAVPKAPFDNWLDEQLS 143 (148)
T ss_dssp EEEEEETTEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEeCCCCHHHHHHHHHHHhc
Confidence 56777888876 6789999999888877654
No 59
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=59.61 E-value=11 Score=27.06 Aligned_cols=31 Identities=23% Similarity=0.241 Sum_probs=21.8
Q ss_pred eEEEEEecCccEE--EEcccCHHHHHHHHHHHH
Q psy2814 46 RTTCLAFQSGKLL--ILGAKHEHDCKLASRKFA 76 (176)
Q Consensus 46 ~~t~~If~sGKiv--itGaks~~~~~~a~~~i~ 76 (176)
-.|+.+|.+|+++ ..|..+.+++...++++.
T Consensus 92 iPT~~~fk~G~~v~~~~G~~~~~~l~~~i~~~l 124 (142)
T 2es7_A 92 FPATLVFTDGKLRGALSGIHPWAELLTLMRSIV 124 (142)
T ss_dssp SSEEEEESCC----CEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 3488899999986 789999888777766554
No 60
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=59.44 E-value=46 Score=23.88 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=24.2
Q ss_pred cceEEEEecCCHHHHHHHHHHHHHHHHhhh
Q psy2814 145 NGRIVITGAKSRSELHEAFDNIYPVLKSFK 174 (176)
Q Consensus 145 sGkivitGaks~~~~~~a~~~i~~~L~~~r 174 (176)
.+.|+|+|. ++.++.|...|..++.+.+
T Consensus 135 ~~~v~I~G~--~~~v~~A~~~I~~~i~~~~ 162 (164)
T 2jvz_A 135 EKIAHIMGP--PDRCEHAARIINDLLQSLR 162 (164)
T ss_dssp EEEEEEESC--HHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEcC--HHHHHHHHHHHHHHHhhhh
Confidence 578999996 8899999999999988765
No 61
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=59.06 E-value=13 Score=26.27 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=30.0
Q ss_pred EEEEEeccceEE--EEecCCHHHHHHHHHHHHHHHHhhh
Q psy2814 138 VVLLIFVNGRIV--ITGAKSRSELHEAFDNIYPVLKSFK 174 (176)
Q Consensus 138 ~t~~IF~sGkiv--itGaks~~~~~~a~~~i~~~L~~~r 174 (176)
.+++|.++|+++ ..|..+.+++.+.++.+++.+.+=+
T Consensus 128 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~~~~ 166 (168)
T 2b1k_A 128 ETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYSKEA 166 (168)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTTHHHHHHHHHHH
T ss_pred EEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHHHHHHhh
Confidence 578899999997 5688899999999888887765533
No 62
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=58.17 E-value=11 Score=24.18 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=21.7
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHH
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRK 74 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~ 74 (176)
.++.+|.+|+++ ..|..+.+++...+++
T Consensus 76 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 105 (107)
T 2i4a_A 76 PTLMLVRDGKVIDKKVGALPKSQLKAWVES 105 (107)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHH
T ss_pred CEEEEEeCCEEEEEecCCCCHHHHHHHHHh
Confidence 367778999987 6798888887776654
No 63
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=58.14 E-value=7.5 Score=25.47 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=22.6
Q ss_pred EEEEeccceEEE--EecCCHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIVI--TGAKSRSELHEAFDNI 166 (176)
Q Consensus 139 t~~IF~sGkivi--tGaks~~~~~~a~~~i 166 (176)
|+.+|.+|+++- .|..+.+++.+.++++
T Consensus 74 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~ 103 (105)
T 4euy_A 74 TVLLFYNGKEILRESRFISLENLERTIQLF 103 (105)
T ss_dssp EEEEEETTEEEEEEESSCCHHHHHHHHHTT
T ss_pred EEEEEeCCeEEEEEeCCcCHHHHHHHHHHh
Confidence 677889999874 7999999988887654
No 64
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=58.06 E-value=11 Score=24.94 Aligned_cols=27 Identities=30% Similarity=0.578 Sum_probs=20.9
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDN 165 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~ 165 (176)
++.+|++|+++ ..|..+.+++.+.++.
T Consensus 74 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 102 (112)
T 2voc_A 74 TLLVLKDGEVVETSVGFKPKEALQELVNK 102 (112)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHT
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHHHH
Confidence 55667899987 7899999888776654
No 65
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=57.93 E-value=15 Score=24.66 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=22.3
Q ss_pred EEEEecCccEE--EEcccCHHHHHHHHHHH
Q psy2814 48 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 75 (176)
Q Consensus 48 t~~If~sGKiv--itGaks~~~~~~a~~~i 75 (176)
++.+|.+|+++ ..|..+.+++...++++
T Consensus 88 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 117 (119)
T 1w4v_A 88 TVLAMKNGDVVDKFVGIKDEDQLEAFLKKL 117 (119)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 67778999986 67988988888776655
No 66
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=57.69 E-value=16 Score=23.04 Aligned_cols=30 Identities=20% Similarity=0.453 Sum_probs=23.2
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHHHH
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRKFA 76 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~i~ 76 (176)
.++.+|.+|+++ ..|..+.+++...++++.
T Consensus 71 Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 102 (104)
T 2e0q_A 71 PTVIFFKDGEPVDEIIGAVPREEIEIRIKNLL 102 (104)
T ss_dssp CEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CEEEEEECCeEhhhccCCCCHHHHHHHHHHHh
Confidence 367788999985 679889888888776654
No 67
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=57.00 E-value=15 Score=25.45 Aligned_cols=34 Identities=9% Similarity=0.093 Sum_probs=27.1
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHHHHHHHH
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRKFAKILK 80 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~i~~~L~ 80 (176)
.++.+..+|+++ ..|..+.+++...++++++.++
T Consensus 120 ~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~ 155 (156)
T 1kng_A 120 ETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKAL 155 (156)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHHHC
T ss_pred eEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 467778999996 6788899999888888776553
No 68
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=56.29 E-value=7.9 Score=25.68 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=20.2
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNI 166 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i 166 (176)
|+.+|.+|+++ ..|. +.+++.+.++.+
T Consensus 82 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 110 (112)
T 1syr_A 82 TFKVYKNGSSVDTLLGA-NDSALKQLIEKY 110 (112)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHTT
T ss_pred EEEEEECCcEEEEEeCC-CHHHHHHHHHHh
Confidence 46677888874 6788 888888877654
No 69
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=56.20 E-value=14 Score=24.70 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=21.4
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIY 167 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~ 167 (176)
|+.+|.+|+++ ..|.. .+++.+.++.+.
T Consensus 90 t~~~~~~G~~~~~~~G~~-~~~l~~~l~~~l 119 (122)
T 2vlu_A 90 TFLFMKEGDVKDRVVGAI-KEELTAKVGLHA 119 (122)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEeCcC-HHHHHHHHHHHh
Confidence 56778889885 77887 888888777654
No 70
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=55.90 E-value=17 Score=26.48 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=25.8
Q ss_pred EEEEEeccceEE--EEecCCHHHHHHHHHHHH
Q psy2814 138 VVLLIFVNGRIV--ITGAKSRSELHEAFDNIY 167 (176)
Q Consensus 138 ~t~~IF~sGkiv--itGaks~~~~~~a~~~i~ 167 (176)
-|+.+|+.|+.+ +.|+.+.+++.+.++.++
T Consensus 91 PTlilFkdG~~v~~~vG~~~k~~l~~~l~~~l 122 (137)
T 2qsi_A 91 PSLAVVQPERTLGVIAKIQDWSSYLAQIGAML 122 (137)
T ss_dssp SEEEEEECCEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 489999999996 679999999998888765
No 71
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=55.55 E-value=6.3 Score=25.55 Aligned_cols=27 Identities=26% Similarity=0.601 Sum_probs=20.1
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDN 165 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~ 165 (176)
|+.+|++|+++ ..|..+.+++.+.++.
T Consensus 74 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 102 (105)
T 1nsw_A 74 TLILFKGGRPVKQLIGYQPKEQLEAQLAD 102 (105)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHTTT
T ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHH
Confidence 45566888875 6799888888777654
No 72
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=55.54 E-value=15 Score=24.31 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.1
Q ss_pred cccCHHHHHHHHHHHHHHHHhcCCC
Q psy2814 61 GAKHEHDCKLASRKFAKILKQLGHP 85 (176)
Q Consensus 61 Gaks~~~~~~a~~~i~~~L~~~g~~ 85 (176)
.+.+-|++++-++-+++.|+++|++
T Consensus 55 saendeqakelleliarllqklgyk 79 (96)
T 2jvf_A 55 SAENDEQAKELLELIARLLQKLGYK 79 (96)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred EecChHHHHHHHHHHHHHHHHhCCC
Confidence 3568899999999999999999985
No 73
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=55.52 E-value=21 Score=25.46 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=28.7
Q ss_pred EEEEecCccEE-----------EEc-ccCHHHHHHHHHHHHHHHHh
Q psy2814 48 TCLAFQSGKLL-----------ILG-AKHEHDCKLASRKFAKILKQ 81 (176)
Q Consensus 48 t~~If~sGKiv-----------itG-aks~~~~~~a~~~i~~~L~~ 81 (176)
|+.+|.+|+++ +.| ..+.+++...++.+.+-.++
T Consensus 80 t~~~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~~~ 125 (149)
T 3gix_A 80 STVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMR 125 (149)
T ss_dssp EEEEEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHhhc
Confidence 55599999998 899 89999999999888877654
No 74
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=54.98 E-value=18 Score=25.10 Aligned_cols=35 Identities=20% Similarity=0.113 Sum_probs=28.1
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHHHHHHHHh
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRKFAKILKQ 81 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~i~~~L~~ 81 (176)
.|+.+|.+|+++ ..|..+.+++...+++++..-.+
T Consensus 80 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~~~ 116 (140)
T 3hz4_A 80 PTFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQHGEE 116 (140)
T ss_dssp SEEEEEETTEEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCcEEEEEcCCCCHHHHHHHHHHHhccccc
Confidence 378889999995 78999999999988887765443
No 75
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=54.93 E-value=16 Score=25.23 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=26.8
Q ss_pred EEEEEeccceEE--EEecCCHHHHHHHHHHHHHHH
Q psy2814 138 VVLLIFVNGRIV--ITGAKSRSELHEAFDNIYPVL 170 (176)
Q Consensus 138 ~t~~IF~sGkiv--itGaks~~~~~~a~~~i~~~L 170 (176)
.++.|.++|+++ ..|..+.+++.+.++.++..+
T Consensus 120 ~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~~~ 154 (156)
T 1kng_A 120 ETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKA 154 (156)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHHH
T ss_pred eEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 467788999996 678889999999888877654
No 76
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=54.59 E-value=17 Score=25.02 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=23.4
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHHHH
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRKFA 76 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~i~ 76 (176)
.|+.+|.+|+++ ..|..+.+++...+++++
T Consensus 106 Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l 137 (140)
T 1v98_A 106 PTLVLFRRGAPVATWVGASPRRVLEERLRPYL 137 (140)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CEEEEEeCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence 377888999987 789988888877766543
No 77
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=54.58 E-value=21 Score=24.48 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=23.0
Q ss_pred cCccEEEEcccCHHHHHHHHHHHHHHHHhc
Q psy2814 53 QSGKLLILGAKHEHDCKLASRKFAKILKQL 82 (176)
Q Consensus 53 ~sGKivitGaks~~~~~~a~~~i~~~L~~~ 82 (176)
.++.|.++|. .+++..|...+..+++++
T Consensus 66 ~~~~ItI~G~--~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 66 GEDKITLEGP--TEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp SSCEEEEEEC--HHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECC--HHHHHHHHHHHHHHHHHH
Confidence 5789999998 777888888888877765
No 78
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=54.45 E-value=9 Score=26.34 Aligned_cols=27 Identities=41% Similarity=0.669 Sum_probs=20.5
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDN 165 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~ 165 (176)
|+.+|++|+++ ..|..+.+++.+.++.
T Consensus 92 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 120 (123)
T 1oaz_A 92 TLLLFKNGEVAATKVGALSKGQLKEFLDA 120 (123)
T ss_dssp EEEEEESSSEEEEEESCCCHHHHHHHHTT
T ss_pred EEEEEECCEEEEEEeCCCCHHHHHHHHHH
Confidence 45566888886 8899998888877654
No 79
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=54.39 E-value=8.6 Score=25.17 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=23.6
Q ss_pred eEEEEEecCccEEE--EcccCHHHHHHHHHHH
Q psy2814 46 RTTCLAFQSGKLLI--LGAKHEHDCKLASRKF 75 (176)
Q Consensus 46 ~~t~~If~sGKivi--tGaks~~~~~~a~~~i 75 (176)
-.|+.+|.+|+++- .|..+.+++...++++
T Consensus 72 ~Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~ 103 (105)
T 4euy_A 72 GPTVLLFYNGKEILRESRFISLENLERTIQLF 103 (105)
T ss_dssp CCEEEEEETTEEEEEEESSCCHHHHHHHHHTT
T ss_pred CCEEEEEeCCeEEEEEeCCcCHHHHHHHHHHh
Confidence 35788899999875 7999998888776653
No 80
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=53.86 E-value=25 Score=22.34 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=25.4
Q ss_pred EEEEEeccc----eEEEEecCCHHHHHHHHHHHHHHHHh
Q psy2814 138 VVLLIFVNG----RIVITGAKSRSELHEAFDNIYPVLKS 172 (176)
Q Consensus 138 ~t~~IF~sG----kivitGaks~~~~~~a~~~i~~~L~~ 172 (176)
+.+.|-..| -|.|+|. ++.+..|...|...|.+
T Consensus 36 a~I~i~~~~~~er~v~I~G~--~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 36 ARINISEGNCPERIITLAGP--TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CEEEECSSCCSEEEEEEEEC--HHHHHHHHHHHHHHHHC
T ss_pred CEEEEecCCCCcEEEEEEeC--HHHHHHHHHHHHHHHhc
Confidence 445555555 4888987 89999999999988865
No 81
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=53.60 E-value=18 Score=24.15 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNI 166 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i 166 (176)
|+.+|++|+++ ..|.. .+++.+.++.+
T Consensus 94 t~~~~~~G~~~~~~~G~~-~~~l~~~i~~~ 122 (124)
T 1faa_A 94 TFKILKENSVVGEVTGAK-YDKLLEAIQAA 122 (124)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCC-HHHHHHHHHHh
Confidence 57788899986 67875 77777776654
No 82
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=53.59 E-value=22 Score=25.10 Aligned_cols=37 Identities=16% Similarity=0.378 Sum_probs=29.2
Q ss_pred EEEEEeccceEEEE--ecCCHHHHHHHHHHHHHHHHhhhc
Q psy2814 138 VVLLIFVNGRIVIT--GAKSRSELHEAFDNIYPVLKSFKK 175 (176)
Q Consensus 138 ~t~~IF~sGkivit--Gaks~~~~~~a~~~i~~~L~~~r~ 175 (176)
.+++| ++|+|+-. |.....+.+..++.|...|.+++.
T Consensus 120 ~~~li-~~G~i~~~~~g~~~~~~~~~~~~~l~~~l~~l~~ 158 (159)
T 2a4v_A 120 SHFIF-VDGKLKFKRVKISPEVSVNDAKKEVLEVAEKFKE 158 (159)
T ss_dssp EEEEE-ETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEE-cCCEEEEEEccCCccccHHHHHHHHHHHHHHhhc
Confidence 68889 99999854 555567788889999988887754
No 83
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=53.52 E-value=15 Score=24.67 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=22.2
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHHH
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRKF 75 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~i 75 (176)
.|+.+|.+|+++ ..|. +.++++..++++
T Consensus 86 Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 115 (116)
T 3qfa_C 86 PTFQFFKKGQKVGEFSGA-NKEKLEATINEL 115 (116)
T ss_dssp SEEEEESSSSEEEEEESC-CHHHHHHHHHHH
T ss_pred cEEEEEeCCeEEEEEcCC-CHHHHHHHHHHh
Confidence 478888999987 6688 888888777654
No 84
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=53.42 E-value=2.8 Score=28.18 Aligned_cols=28 Identities=32% Similarity=0.675 Sum_probs=20.9
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNI 166 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i 166 (176)
|+.+|.+|+++ ..|..+.+++.+.++++
T Consensus 87 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~ 116 (121)
T 2i1u_A 87 TLILFKDGQPVKRIVGAKGKAALLRELSDV 116 (121)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHTCSC
T ss_pred EEEEEECCEEEEEecCCCCHHHHHHHHHHH
Confidence 56677888875 67998888888776544
No 85
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=52.99 E-value=11 Score=25.40 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=19.1
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFD 164 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~ 164 (176)
|+.+|.+|+++ ..|.. .+++.+.++
T Consensus 86 t~~~~~~G~~~~~~~G~~-~~~l~~~l~ 112 (114)
T 2oe3_A 86 TFVLGKDGQLIGKIIGAN-PTALEKGIK 112 (114)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHH
T ss_pred EEEEEeCCeEEEEEeCCC-HHHHHHHHH
Confidence 46678899986 78987 777777664
No 86
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=52.80 E-value=21 Score=23.96 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=21.7
Q ss_pred EEEEe-ccceEE--EEecCCHHHHHHHHHHHH
Q psy2814 139 VLLIF-VNGRIV--ITGAKSRSELHEAFDNIY 167 (176)
Q Consensus 139 t~~IF-~sGkiv--itGaks~~~~~~a~~~i~ 167 (176)
++.+| ++|+++ ..|..+.+++.+.++...
T Consensus 89 t~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~ 120 (130)
T 2kuc_A 89 TLLFINSSGEVVYRLVGAEDAPELLKKVKLGV 120 (130)
T ss_dssp EEEEECTTSCEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCcEEEEecCCCCHHHHHHHHHHHH
Confidence 45566 789886 569988888888777653
No 87
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=52.77 E-value=9.6 Score=24.52 Aligned_cols=29 Identities=21% Similarity=0.460 Sum_probs=22.0
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHHH
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRKF 75 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~i 75 (176)
.++.+|.+|+++ ..|..+.+++...++++
T Consensus 74 Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~ 104 (109)
T 2yzu_A 74 PTVILFKDGQPVEVLVGAQPKRNYQAKIEKH 104 (109)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHTT
T ss_pred CEEEEEeCCcEeeeEeCCCCHHHHHHHHHHH
Confidence 367778999986 68998888877766543
No 88
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=52.29 E-value=19 Score=26.31 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=25.2
Q ss_pred eEEEEEecCccEE--EEcccCHHHHHHHHHHHH
Q psy2814 46 RTTCLAFQSGKLL--ILGAKHEHDCKLASRKFA 76 (176)
Q Consensus 46 ~~t~~If~sGKiv--itGaks~~~~~~a~~~i~ 76 (176)
-.|+.+|++|+.+ +.|+.+.+++...+++++
T Consensus 92 IPTlilFk~G~~v~~~~G~~~k~~l~~~i~~~l 124 (140)
T 2qgv_A 92 FPATLVFTGGNYRGVLNGIHPWAELINLMRGLV 124 (140)
T ss_dssp SSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CCEEEEEECCEEEEEEecCCCHHHHHHHHHHHh
Confidence 4599999999995 569999988887766544
No 89
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=51.61 E-value=20 Score=22.85 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=21.9
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHHH
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRKF 75 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~i 75 (176)
.|+.+|.+|+.+ .+|. +.+++...++++
T Consensus 75 Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 104 (105)
T 3m9j_A 75 PTFQFFKKGQKVGEFSGA-NKEKLEATINEL 104 (105)
T ss_dssp SEEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred cEEEEEECCeEEEEEeCC-CHHHHHHHHHHh
Confidence 478888999986 6788 888887776654
No 90
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=51.60 E-value=17 Score=25.31 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=24.3
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHHHH
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRKFA 76 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~i~ 76 (176)
.|+.+|.+|+++ ..|..+.+++...+++++
T Consensus 111 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 142 (148)
T 3p2a_A 111 PTIMLYRNGKMIDMLNGAVPKAPFDNWLDEQL 142 (148)
T ss_dssp SEEEEEETTEEEEEESSCCCHHHHHHHHHHHH
T ss_pred CEEEEEECCeEEEEEeCCCCHHHHHHHHHHHh
Confidence 378888999987 679999998888877654
No 91
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=51.05 E-value=20 Score=25.60 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=23.5
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHHHH
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRKFA 76 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~i~ 76 (176)
.|+.+|.+|+++ ..|..+.+++...+++.+
T Consensus 120 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 151 (155)
T 2ppt_A 120 PAFILFHKGRELARAAGARPASELVGFVRGKL 151 (155)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CEEEEEeCCeEEEEecCCCCHHHHHHHHHHHh
Confidence 377788999997 789988888877766543
No 92
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=50.74 E-value=23 Score=22.98 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=21.5
Q ss_pred EEEEecCccEE--EEcccCHHHHHHHHHHHH
Q psy2814 48 TCLAFQSGKLL--ILGAKHEHDCKLASRKFA 76 (176)
Q Consensus 48 t~~If~sGKiv--itGaks~~~~~~a~~~i~ 76 (176)
|+.+|.+|+++ ..|. +.+++...+++++
T Consensus 81 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l 110 (112)
T 1ep7_A 81 TFHVYKDGVKADDLVGA-SQDKLKALVAKHA 110 (112)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEcCC-CHHHHHHHHHHHh
Confidence 67888999985 6788 8888777766553
No 93
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=50.67 E-value=20 Score=26.98 Aligned_cols=36 Identities=8% Similarity=0.045 Sum_probs=29.6
Q ss_pred eEEEEEecCccEE-----------EEcccC-HHHHHHHHHHHHHHHHh
Q psy2814 46 RTTCLAFQSGKLL-----------ILGAKH-EHDCKLASRKFAKILKQ 81 (176)
Q Consensus 46 ~~t~~If~sGKiv-----------itGaks-~~~~~~a~~~i~~~L~~ 81 (176)
-+|+.+|.+|+.+ +.|+.+ .+++...++.+++--++
T Consensus 96 iPT~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a~~ 143 (160)
T 2av4_A 96 PVSVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGARK 143 (160)
T ss_dssp SEEEEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHhhc
Confidence 4799999999997 779977 88888888888776654
No 94
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=50.64 E-value=16 Score=24.13 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=20.2
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHH
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASR 73 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~ 73 (176)
.++.+|.+|+++ ..|..+.+++...++
T Consensus 73 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~ 101 (112)
T 2voc_A 73 PTLLVLKDGEVVETSVGFKPKEALQELVN 101 (112)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHH
T ss_pred cEEEEEeCCEEEEEEeCCCCHHHHHHHHH
Confidence 367777999987 789988887665543
No 95
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=50.63 E-value=18 Score=23.93 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=19.6
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNI 166 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i 166 (176)
|+.+|.+|+++ ..|. +.+++.+.++++
T Consensus 88 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 116 (117)
T 2xc2_A 88 TFIAIKNGEKVGDVVGA-SIAKVEDMIKKF 116 (117)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred eEEEEeCCcEEEEEeCC-CHHHHHHHHHHh
Confidence 56677888885 6684 788887777654
No 96
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=50.61 E-value=23 Score=23.05 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNI 166 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i 166 (176)
|+.+|++|+++ ..|. +.+++.+.++.+
T Consensus 81 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 109 (111)
T 2pu9_C 81 TFKILKENSVVGEVTGA-KYDKLLEAIQAA 109 (111)
T ss_dssp EEEEESSSSEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCC-CHHHHHHHHHHh
Confidence 57788999985 6788 477777776654
No 97
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=50.02 E-value=13 Score=25.01 Aligned_cols=35 Identities=17% Similarity=0.383 Sum_probs=26.9
Q ss_pred eEEEEEeccce--------EEEEecCCHHHHHHHHHHHHHHHHhh
Q psy2814 137 RVVLLIFVNGR--------IVITGAKSRSELHEAFDNIYPVLKSF 173 (176)
Q Consensus 137 ~~t~~IF~sGk--------ivitGaks~~~~~~a~~~i~~~L~~~ 173 (176)
.+.+.|-..|. |.|+| +++.++.|.+.|..++.+.
T Consensus 45 ga~I~I~~~~~~~~~~~r~v~I~G--~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 45 GVKMVMIQDGPQNTGADKPLRITG--DPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp TSEEEECCSCCCSSCSCEEEEEEE--CTTTHHHHHHHHHHHHCCC
T ss_pred CCeEEecCCCCCCCCCceEEEEEe--CHHHHHHHHHHHHHHHhcc
Confidence 35555666665 89999 6789999999999888653
No 98
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=49.97 E-value=27 Score=22.74 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=20.5
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIYPV 169 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~~~ 169 (176)
|+.+|..|+++ ..|. +.+++.+.++.+.+-
T Consensus 79 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~~ 110 (112)
T 3d6i_A 79 YFIIIHKGTILKELSGA-DPKEYVSLLEDCKNS 110 (112)
T ss_dssp EEEEEETTEEEEEECSC-CHHHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEecCC-CHHHHHHHHHHHHhh
Confidence 45567788875 5677 566788877776653
No 99
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=49.24 E-value=14 Score=24.47 Aligned_cols=28 Identities=25% Similarity=0.570 Sum_probs=21.0
Q ss_pred EEEEeccceE--EEEecCCHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRI--VITGAKSRSELHEAFDNI 166 (176)
Q Consensus 139 t~~IF~sGki--vitGaks~~~~~~a~~~i 166 (176)
|+.+|.+|++ .+.|..+.+++.+.++..
T Consensus 75 t~~~~~~G~~v~~~~G~~~~~~l~~~~~~~ 104 (110)
T 2l6c_A 75 TLVFIRDGKVAKVFSGIMNPRELQALYASI 104 (110)
T ss_dssp EEEEEESSSEEEEEESCCCHHHHHHHHHTC
T ss_pred EEEEEECCEEEEEEcCCCCHHHHHHHHHHH
Confidence 4566788887 456988999988877654
No 100
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=49.08 E-value=23 Score=25.49 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=26.1
Q ss_pred CccEEEEcccCHHHHHHHHHHHHHHHHhcCCC
Q psy2814 54 SGKLLILGAKHEHDCKLASRKFAKILKQLGHP 85 (176)
Q Consensus 54 sGKivitGaks~~~~~~a~~~i~~~L~~~g~~ 85 (176)
.=-|+|||. |..+++..++.+.+.+++.|..
T Consensus 35 DyfVIatg~-S~rqv~Aiad~v~~~lk~~g~~ 65 (125)
T 2o5a_A 35 DFFLICHGN-SEKQVQAIAHELKKVAQEQGIE 65 (125)
T ss_dssp CEEEEEEES-SHHHHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEEcC-CHHHHHHHHHHHHHHHHHcCCc
Confidence 334777777 9999999999999999998864
No 101
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=49.04 E-value=27 Score=22.07 Aligned_cols=27 Identities=22% Similarity=0.491 Sum_probs=19.1
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNI 166 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i 166 (176)
++.+|.+|+++ ..|. +.+++.+.++++
T Consensus 75 t~~~~~~g~~~~~~~G~-~~~~l~~~l~~~ 103 (104)
T 2vim_A 75 TFVFIKDGKEVDRFSGA-NETKLRETITRH 103 (104)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEeCC-CHHHHHHHHHhh
Confidence 46677788875 5684 788888777654
No 102
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=48.73 E-value=24 Score=23.95 Aligned_cols=27 Identities=22% Similarity=0.573 Sum_probs=20.3
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNI 166 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i 166 (176)
|+.+|.+|+++ ..|. +.+++.+.++.+
T Consensus 94 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 122 (124)
T 1xfl_A 94 TFMFLKEGKILDKVVGA-KKDELQSTIAKH 122 (124)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeCC-CHHHHHHHHHHh
Confidence 56677889885 6785 788888877654
No 103
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=48.19 E-value=7.8 Score=26.87 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=23.9
Q ss_pred EEEEe-ccceEE----EEecCCHHHHHHHHHHHHH
Q psy2814 139 VLLIF-VNGRIV----ITGAKSRSELHEAFDNIYP 168 (176)
Q Consensus 139 t~~IF-~sGkiv----itGaks~~~~~~a~~~i~~ 168 (176)
++.+| ++|+++ ..|..+.+++.+.++.+-|
T Consensus 94 t~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~~ 128 (134)
T 2fwh_A 94 TILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQP 128 (134)
T ss_dssp EEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC--
T ss_pred EEEEECCCCCEeeeeeeeeccCHHHHHHHHHhcCc
Confidence 56677 899996 8999999999998887654
No 104
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=48.01 E-value=26 Score=22.26 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=21.8
Q ss_pred cceEEEEecCCHHHHHHHHHHHHHHHHh
Q psy2814 145 NGRIVITGAKSRSELHEAFDNIYPVLKS 172 (176)
Q Consensus 145 sGkivitGaks~~~~~~a~~~i~~~L~~ 172 (176)
.+.|.|+|. ++.++.|...|...+.+
T Consensus 49 ~~~v~I~G~--~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 49 DRQVTITGS--AASISLAQYLINVRLSS 74 (76)
T ss_dssp EEEEEEEEC--HHHHHHHHHHHHHHHTT
T ss_pred eEEEEEEeC--HHHHHHHHHHHHHHHHc
Confidence 678899996 89999999999887753
No 105
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=47.90 E-value=18 Score=24.27 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=28.5
Q ss_pred eEEEEEecCcc--------EEEEcccCHHHHHHHHHHHHHHHHhcC
Q psy2814 46 RTTCLAFQSGK--------LLILGAKHEHDCKLASRKFAKILKQLG 83 (176)
Q Consensus 46 ~~t~~If~sGK--------ivitGaks~~~~~~a~~~i~~~L~~~g 83 (176)
.|.+.|-..|. |.|+| +.+.+..|.+.+..++++.+
T Consensus 45 ga~I~I~~~~~~~~~~~r~v~I~G--~~~~v~~A~~~I~~~i~~~~ 88 (94)
T 1x4m_A 45 GVKMVMIQDGPQNTGADKPLRITG--DPYKVQQAKEMVLELIRDQG 88 (94)
T ss_dssp TSEEEECCSCCCSSCSCEEEEEEE--CTTTHHHHHHHHHHHHCCCS
T ss_pred CCeEEecCCCCCCCCCceEEEEEe--CHHHHHHHHHHHHHHHhccC
Confidence 45677777776 99999 77899999998888887653
No 106
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=47.36 E-value=26 Score=25.47 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=26.0
Q ss_pred CccEEEEcccCHHHHHHHHHHHHHHHHhcCCC
Q psy2814 54 SGKLLILGAKHEHDCKLASRKFAKILKQLGHP 85 (176)
Q Consensus 54 sGKivitGaks~~~~~~a~~~i~~~L~~~g~~ 85 (176)
.=-|+|||. |..+++..++.+.+.+++.|..
T Consensus 35 DyfVIaTg~-S~rqv~Aiad~v~~~lk~~g~~ 65 (130)
T 2id1_A 35 QRMIVATGD-SNRQVKALANSVQVKLKEAGVD 65 (130)
T ss_dssp SEEEEEECS-SHHHHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEEcC-CHHHHHHHHHHHHHHHHHcCCc
Confidence 334777777 9999999999999999998864
No 107
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=47.35 E-value=29 Score=23.73 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=20.8
Q ss_pred EEEEecCccEE--EEcccCHHHHHHHHHHHH
Q psy2814 48 TCLAFQSGKLL--ILGAKHEHDCKLASRKFA 76 (176)
Q Consensus 48 t~~If~sGKiv--itGaks~~~~~~a~~~i~ 76 (176)
|+.+|.+|+++ .+| .+.+++...+++++
T Consensus 93 t~~i~~~G~~~~~~~G-~~~~~l~~~l~~~l 122 (125)
T 1r26_A 93 TFIIARSGKMLGHVIG-ANPGMLRQKLRDII 122 (125)
T ss_dssp EEEEEETTEEEEEEES-SCHHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEeC-CCHHHHHHHHHHHh
Confidence 67888999985 678 47777777766554
No 108
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=47.26 E-value=15 Score=23.59 Aligned_cols=27 Identities=30% Similarity=0.664 Sum_probs=20.3
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDN 165 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~ 165 (176)
|+.+|.+|+++ ..|..+.+++.+.+++
T Consensus 76 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~ 104 (106)
T 3die_A 76 TLIVFKDGQPVDKVVGFQPKENLAEVLDK 104 (106)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHT
T ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHH
Confidence 56677788874 5788888888887764
No 109
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=47.16 E-value=21 Score=23.98 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=20.9
Q ss_pred EEEEecCccEE--EEcccCHHHHHHHHHHH
Q psy2814 48 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 75 (176)
Q Consensus 48 t~~If~sGKiv--itGaks~~~~~~a~~~i 75 (176)
|+.+|.+|+++ ..|. +.+++...++++
T Consensus 91 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 119 (121)
T 2j23_A 91 TFVFFKNGQKIDTVVGA-DPSKLQAAITQH 119 (121)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEECCeEEeeEcCC-CHHHHHHHHHHh
Confidence 67788999986 6788 888877776654
No 110
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=47.04 E-value=28 Score=23.75 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=21.6
Q ss_pred EEEEecCccEE--EEcccCHHHHHHHHHHHHH
Q psy2814 48 TCLAFQSGKLL--ILGAKHEHDCKLASRKFAK 77 (176)
Q Consensus 48 t~~If~sGKiv--itGaks~~~~~~a~~~i~~ 77 (176)
|+.+|.+|+++ ..|. +.+++...++++++
T Consensus 102 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~ 132 (139)
T 3d22_A 102 TFFFLRDGQQVDKLVGA-NKPELHKKITAILD 132 (139)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHHHH
T ss_pred EEEEEcCCeEEEEEeCC-CHHHHHHHHHHHhc
Confidence 67788999987 5688 78877777665543
No 111
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=46.79 E-value=27 Score=22.58 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=21.3
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIYP 168 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~~ 168 (176)
++.+|.+|+++ ..|. +.+++.+.++.+++
T Consensus 82 t~~~~~~G~~~~~~~g~-~~~~l~~~l~~~~~ 112 (113)
T 1ti3_A 82 TFIFLKDGKLVDKTVGA-DKDGLPTLVAKHAT 112 (113)
T ss_dssp EEEEEETTEEEEEEECC-CTTHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEecC-CHHHHHHHHHHhhc
Confidence 56677888874 5785 78888888877653
No 112
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=46.75 E-value=27 Score=24.57 Aligned_cols=35 Identities=11% Similarity=0.015 Sum_probs=28.4
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHHHHHHHHh
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRKFAKILKQ 81 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~i~~~L~~ 81 (176)
.++.|..+|+++ ..|..+.++....++++++.+++
T Consensus 128 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~~ 164 (168)
T 2b1k_A 128 ETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYSK 164 (168)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTTHHHHHHHHH
T ss_pred EEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 578889999997 56888999998888888776653
No 113
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=46.63 E-value=27 Score=24.05 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=23.1
Q ss_pred EEEEecCccEE--EEcccCHHHHHHHHHHHH
Q psy2814 48 TCLAFQSGKLL--ILGAKHEHDCKLASRKFA 76 (176)
Q Consensus 48 t~~If~sGKiv--itGaks~~~~~~a~~~i~ 76 (176)
|+.+|.+|+++ .+|..+.+..+..++++.
T Consensus 95 t~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~ 125 (135)
T 3emx_A 95 TLVFYKEGRIVDKLVGATPWSLKVEKAREIY 125 (135)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred eEEEEcCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 88899999985 679988888877665554
No 114
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=46.51 E-value=29 Score=23.25 Aligned_cols=28 Identities=7% Similarity=0.272 Sum_probs=21.5
Q ss_pred EEEEec-cceEE--EEecCCHHHHHHHHHHH
Q psy2814 139 VLLIFV-NGRIV--ITGAKSRSELHEAFDNI 166 (176)
Q Consensus 139 t~~IF~-sGkiv--itGaks~~~~~~a~~~i 166 (176)
++.+|. +|+++ ..|..+.+++.+.+++.
T Consensus 85 t~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 115 (126)
T 2l57_A 85 TTVFLDKEGNKFYVHQGLMRKNNIETILNSL 115 (126)
T ss_dssp EEEEECTTCCEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEecCCCCHHHHHHHHHHH
Confidence 556666 88885 67988999988887765
No 115
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=46.06 E-value=24 Score=26.31 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=25.1
Q ss_pred EEEEeccceE--EEEecCCHHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRI--VITGAKSRSELHEAFDNIYP 168 (176)
Q Consensus 139 t~~IF~sGki--vitGaks~~~~~~a~~~i~~ 168 (176)
++.|+.+|+. .+.|+.+.+++.++++.+..
T Consensus 179 t~~i~~~G~~~~~~~G~~~~~~l~~~l~~~~~ 210 (216)
T 2in3_A 179 ALVVESGTDRYLITTGYRPIEALRQLLDTWLQ 210 (216)
T ss_dssp EEEEEETTEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred eEEEEECCEEEEeccCCCCHHHHHHHHHHHHH
Confidence 6667789998 78999999999999887653
No 116
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=45.86 E-value=24 Score=22.68 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=19.7
Q ss_pred EEEEeccceE--EEEecCCHHHHHHHHHH
Q psy2814 139 VLLIFVNGRI--VITGAKSRSELHEAFDN 165 (176)
Q Consensus 139 t~~IF~sGki--vitGaks~~~~~~a~~~ 165 (176)
|+.+|.+|++ ...|..+.+++.+.+++
T Consensus 81 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~ 109 (111)
T 3uvt_A 81 TLLLFRGGKKVSEHSGGRDLDSLHRFVLS 109 (111)
T ss_dssp EEEEEETTEEEEEECSCCSHHHHHHHHHH
T ss_pred EEEEEeCCcEEEeccCCcCHHHHHHHHHh
Confidence 4566778877 46788888888877654
No 117
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=45.66 E-value=42 Score=21.65 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.4
Q ss_pred ceEEEEecCCHHHHHHHHHHHHHHHHhh
Q psy2814 146 GRIVITGAKSRSELHEAFDNIYPVLKSF 173 (176)
Q Consensus 146 GkivitGaks~~~~~~a~~~i~~~L~~~ 173 (176)
+.|+|+| +++.++.|.+.|..++.+.
T Consensus 52 ~~v~I~G--~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 52 RIITITG--TQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp EEEEEEE--CHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEe--CHHHHHHHHHHHHHHHHhc
Confidence 5799999 4899999999999988765
No 118
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=45.52 E-value=15 Score=25.18 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=21.6
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHH
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRK 74 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~ 74 (176)
.|+.+|.+|+++ ..|..+.+++...+++
T Consensus 91 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 120 (123)
T 1oaz_A 91 PTLLLFKNGEVAATKVGALSKGQLKEFLDA 120 (123)
T ss_dssp SEEEEEESSSEEEEEESCCCHHHHHHHHTT
T ss_pred CEEEEEECCEEEEEEeCCCCHHHHHHHHHH
Confidence 367777999997 8899888887766543
No 119
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=45.12 E-value=24 Score=24.34 Aligned_cols=30 Identities=37% Similarity=0.529 Sum_probs=23.5
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIYP 168 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~~ 168 (176)
|+.+|..|+++ +.|..+.+.+++.++++..
T Consensus 95 t~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~~ 126 (135)
T 3emx_A 95 TLVFYKEGRIVDKLVGATPWSLKVEKAREIYG 126 (135)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHC-
T ss_pred eEEEEcCCEEEEEEeCCCCHHHHHHHHHHHhC
Confidence 67788899875 7899999888887776653
No 120
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.06 E-value=30 Score=23.15 Aligned_cols=30 Identities=20% Similarity=0.437 Sum_probs=22.2
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIYP 168 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~~ 168 (176)
|+.+|..|+.+ ..|..+.+++.+.++++++
T Consensus 86 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~ 117 (133)
T 1x5d_A 86 TIKIFQKGESPVDYDGGRTRSDIVSRALDLFS 117 (133)
T ss_dssp EEEEEETTEEEEEECSCCSHHHHHHHHHHHHH
T ss_pred eEEEEeCCCceEEecCCCCHHHHHHHHHHHhh
Confidence 45667777754 5688889998888877664
No 121
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=44.78 E-value=35 Score=22.83 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=21.1
Q ss_pred EEEEEe-cCccEE--EEcccCHHHHHHHHHHH
Q psy2814 47 TTCLAF-QSGKLL--ILGAKHEHDCKLASRKF 75 (176)
Q Consensus 47 ~t~~If-~sGKiv--itGaks~~~~~~a~~~i 75 (176)
.++.+| .+|+++ .+|..+.+++...+++.
T Consensus 88 Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~ 119 (130)
T 2kuc_A 88 PTLLFINSSGEVVYRLVGAEDAPELLKKVKLG 119 (130)
T ss_dssp CEEEEECTTSCEEEEEESCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCcEEEEecCCCCHHHHHHHHHHH
Confidence 366677 799987 56998888777665544
No 122
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=44.36 E-value=39 Score=22.20 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=23.0
Q ss_pred cceEEEEecCCHHHHHHHHHHHHHHHHhh
Q psy2814 145 NGRIVITGAKSRSELHEAFDNIYPVLKSF 173 (176)
Q Consensus 145 sGkivitGaks~~~~~~a~~~i~~~L~~~ 173 (176)
.+.|+|+|. ++.++.|.+.|..++.+.
T Consensus 58 ~~~v~I~G~--~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 58 DRIITITGT--QDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp EEEEEEEEE--HHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEcC--HHHHHHHHHHHHHHHHhh
Confidence 478999997 889999999999888764
No 123
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=44.35 E-value=45 Score=22.09 Aligned_cols=28 Identities=11% Similarity=0.167 Sum_probs=24.0
Q ss_pred ceEEEEecCCHHHHHHHHHHHHHHHHhhhc
Q psy2814 146 GRIVITGAKSRSELHEAFDNIYPVLKSFKK 175 (176)
Q Consensus 146 GkivitGaks~~~~~~a~~~i~~~L~~~r~ 175 (176)
+.|+|+|. ++.++.|.+.|..++.+.+.
T Consensus 60 r~v~I~G~--~e~v~~A~~~I~~~i~~~~~ 87 (92)
T 1x4n_A 60 RSCMLTGT--PESVQSAKRLLDQIVEKGRS 87 (92)
T ss_dssp EEEEEEEC--HHHHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEeC--HHHHHHHHHHHHHHHHhccc
Confidence 57899996 89999999999999988663
No 124
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=44.23 E-value=28 Score=22.10 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=18.4
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDN 165 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~ 165 (176)
|+.+|.+|+++ ..| .+.+++.+.+++
T Consensus 77 t~~~~~~G~~~~~~~g-~~~~~l~~~i~~ 104 (106)
T 1xwb_A 77 TFVFLKNGVKVEEFAG-ANAKRLEDVIKA 104 (106)
T ss_dssp EEEEEETTEEEEEEES-CCHHHHHHHHHH
T ss_pred EEEEEcCCcEEEEEcC-CCHHHHHHHHHH
Confidence 56677888874 567 577777777654
No 125
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=44.06 E-value=15 Score=24.25 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=20.2
Q ss_pred EEEEecCccEE--EEcccCHHHHHHHHHH
Q psy2814 48 TCLAFQSGKLL--ILGAKHEHDCKLASRK 74 (176)
Q Consensus 48 t~~If~sGKiv--itGaks~~~~~~a~~~ 74 (176)
++.+|.+|+++ ..|. +.+++...+++
T Consensus 82 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~ 109 (112)
T 1syr_A 82 TFKVYKNGSSVDTLLGA-NDSALKQLIEK 109 (112)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHT
T ss_pred EEEEEECCcEEEEEeCC-CHHHHHHHHHH
Confidence 67888999985 6788 88887776654
No 126
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=43.34 E-value=27 Score=23.15 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=22.4
Q ss_pred EEEEe-ccceEE-EEecCCHHHHHHHHHHHH
Q psy2814 139 VLLIF-VNGRIV-ITGAKSRSELHEAFDNIY 167 (176)
Q Consensus 139 t~~IF-~sGkiv-itGaks~~~~~~a~~~i~ 167 (176)
++.++ ++|+++ ..|..+.+++.+.++.++
T Consensus 104 ~~~~id~~g~i~~~~g~~~~~~l~~~l~~~l 134 (136)
T 1zzo_A 104 AYAFVDPHGNVDVVRGRMSQDELTRRVTALT 134 (136)
T ss_dssp EEEEECTTCCEEEEESCCCHHHHHHHHHHHC
T ss_pred eEEEECCCCCEEEEecCCCHHHHHHHHHHHh
Confidence 45555 799996 888888999888887764
No 127
>2nmm_A 14 kDa phosphohistidine phosphatase; NESG Q9H0Y3 human phosphohistidine phosphatase, structural G PSI-2, protein structure initiative; 2.70A {Homo sapiens} SCOP: d.322.1.1
Probab=43.15 E-value=41 Score=24.64 Aligned_cols=64 Identities=11% Similarity=0.134 Sum_probs=46.1
Q ss_pred cCCCcEEcc-CCCceEEEEEcCCeEEEEEecCccEEEEcccCHHHHHHHHHHHHHHHHhcCCCcc
Q psy2814 24 RVRYSEYNP-GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIK 87 (176)
Q Consensus 24 ~~~n~~Y~P-~~fpgl~~R~~~p~~t~~If~sGKivitGaks~~~~~~a~~~i~~~L~~~g~~~~ 87 (176)
.++.++=+| ..|.-+.+|+..+...-.=+...|.++.|.+..+-=....+++.+.|+++|+.++
T Consensus 18 ~vP~V~Id~~G~fKYVLi~v~~~~~~~~~~~~~k~iVRG~~~a~yH~diyd~~~~el~~~Gl~~~ 82 (135)
T 2nmm_A 18 LIPDVDIDSDGVFKYVLIRVHSAPRSGAPAAESKEIVRGYKWAEYHADIYDKVSGDMQKQGCDCE 82 (135)
T ss_dssp GSCSEEECSSSEEEEEEEEEECCC-------CEEEEEEEETTCSSHHHHHHHHHHHHHTTTCEEE
T ss_pred CCCeEEECCCCcEEEEEEEEEeCCCCCCcccceeEEEEECCCccHHHHHHHHHHHHHHHcCCeeE
Confidence 367888898 7888899998866321100113489999987777777888899999999987654
No 128
>2hw4_A 14 kDa phosphohistidine phosphatase; PHPT1, human, structural genomics, structural genomics consortium, SGC, hydrolase; 1.90A {Homo sapiens} SCOP: d.322.1.1 PDB: 2ai6_A 2ozw_A 2ozx_A
Probab=42.63 E-value=36 Score=25.26 Aligned_cols=64 Identities=11% Similarity=0.134 Sum_probs=45.4
Q ss_pred cCCCcEEcc-CCCceEEEEEcCCeEEEEEecCccEEEEcccCHHHHHHHHHHHHHHHHhcCCCcc
Q psy2814 24 RVRYSEYNP-GKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIK 87 (176)
Q Consensus 24 ~~~n~~Y~P-~~fpgl~~R~~~p~~t~~If~sGKivitGaks~~~~~~a~~~i~~~L~~~g~~~~ 87 (176)
.++.++=+| ..|.-+.+|+..+...-.=+...|.++.|.+..+-=....+++.+.|+++|+.++
T Consensus 27 ~vP~V~Id~~G~fKYVLi~v~~~~~~~~~~~~~k~IVRG~~~a~YH~Diyd~~~~el~~~Gl~~e 91 (144)
T 2hw4_A 27 LIPDVDIDSDGVFKYVLIRVHSAPRSGAPAAESKEIVRGYKWAEYHADIYDKVSGDMQKQGCDCE 91 (144)
T ss_dssp GSCSEEECCSEEEEEEEEEEECC--------CEEEEEEECTTCSSHHHHHHHHHHHHHHTTCEEE
T ss_pred cCCeEEECCCCcEEEEEEEEEeCCCCCccccceeEEEEECCCchHHHHHHHHHHHHHHHcCCeeE
Confidence 367888888 7888888888766322111113489999987777777888899999999987654
No 129
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=42.58 E-value=24 Score=25.77 Aligned_cols=31 Identities=6% Similarity=0.048 Sum_probs=24.6
Q ss_pred eccceEEEEecCCHHHHHHHHHHHHHHHHhh
Q psy2814 143 FVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173 (176)
Q Consensus 143 F~sGkivitGaks~~~~~~a~~~i~~~L~~~ 173 (176)
|-+|+..+.|+.+.+++.++++.++...++-
T Consensus 155 ving~~~~~g~~~~~~l~~~i~~~l~~~~~~ 185 (195)
T 2znm_A 155 IVGGKYRVIFNNGFDGGVHTIKELVAKVREE 185 (195)
T ss_dssp EETTTEEECCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EECCEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 3389988899888999999998887665544
No 130
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=42.56 E-value=41 Score=21.83 Aligned_cols=28 Identities=18% Similarity=0.494 Sum_probs=20.1
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIY 167 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~ 167 (176)
++.+|.+|+++ ..|. +.+++.+.++++.
T Consensus 84 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~ 113 (118)
T 2vm1_A 84 TFLFIKDGEKVDSVVGG-RKDDIHTKIVALM 113 (118)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEecCC-CHHHHHHHHHHHh
Confidence 46667788875 6775 7888888777654
No 131
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=42.41 E-value=35 Score=22.54 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=20.4
Q ss_pred EEEEecCccEE--EEcccCHHHHHHHHHHH
Q psy2814 48 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 75 (176)
Q Consensus 48 t~~If~sGKiv--itGaks~~~~~~a~~~i 75 (176)
|+.+|.+|+++ .+|.. .+++...++++
T Consensus 90 t~~~~~~G~~~~~~~G~~-~~~l~~~l~~~ 118 (122)
T 2vlu_A 90 TFLFMKEGDVKDRVVGAI-KEELTAKVGLH 118 (122)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEeCcC-HHHHHHHHHHH
Confidence 67888999985 67887 77777666554
No 132
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=42.37 E-value=21 Score=24.54 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=21.9
Q ss_pred ceEEEEecCCHHHHHHHHHHHHHHHHhh
Q psy2814 146 GRIVITGAKSRSELHEAFDNIYPVLKSF 173 (176)
Q Consensus 146 GkivitGaks~~~~~~a~~~i~~~L~~~ 173 (176)
+.|+|+| +.+.++.|.+.|..++.+-
T Consensus 55 r~V~I~G--~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 55 KLFIIRG--SPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp EEEEEES--CHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEEC--CHHHHHHHHHHHHHHHhcc
Confidence 6788998 6899999999998887653
No 133
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=41.75 E-value=38 Score=22.56 Aligned_cols=29 Identities=10% Similarity=0.182 Sum_probs=21.3
Q ss_pred EEEEEec-CccEE--EEcccCHHHHHHHHHHH
Q psy2814 47 TTCLAFQ-SGKLL--ILGAKHEHDCKLASRKF 75 (176)
Q Consensus 47 ~t~~If~-sGKiv--itGaks~~~~~~a~~~i 75 (176)
.++.+|. +|+++ ..|..+.+++...+++.
T Consensus 84 Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 115 (126)
T 2l57_A 84 PTTVFLDKEGNKFYVHQGLMRKNNIETILNSL 115 (126)
T ss_dssp SEEEEECTTCCEEEEEESCCCHHHHHHHHHHH
T ss_pred eEEEEECCCCCEEEEecCCCCHHHHHHHHHHH
Confidence 3677777 99985 67988888877665543
No 134
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=41.39 E-value=48 Score=20.92 Aligned_cols=33 Identities=9% Similarity=0.008 Sum_probs=24.8
Q ss_pred EEEEEecCc----cEEEEcccCHHHHHHHHHHHHHHHHh
Q psy2814 47 TTCLAFQSG----KLLILGAKHEHDCKLASRKFAKILKQ 81 (176)
Q Consensus 47 ~t~~If~sG----KivitGaks~~~~~~a~~~i~~~L~~ 81 (176)
+.+.|..+| .+.++|. .+.+..|...+...|++
T Consensus 36 a~I~i~~~~~~er~v~I~G~--~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 36 ARINISEGNCPERIITLAGP--TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CEEEECSSCCSEEEEEEEEC--HHHHHHHHHHHHHHHHC
T ss_pred CEEEEecCCCCcEEEEEEeC--HHHHHHHHHHHHHHHhc
Confidence 445555555 4888887 88999999999888864
No 135
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=41.26 E-value=23 Score=23.61 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=21.5
Q ss_pred EEEEe-ccceEE-EE---ecCCHHHHHHHHHHHH
Q psy2814 139 VLLIF-VNGRIV-IT---GAKSRSELHEAFDNIY 167 (176)
Q Consensus 139 t~~IF-~sGkiv-it---Gaks~~~~~~a~~~i~ 167 (176)
++.++ ++|+++ .. |..+.+++.+.+++++
T Consensus 102 ~~~lid~~G~i~~~~~~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 102 AFVFYRADGTSTFVNNPTAAMSQDELSGRVAALT 135 (136)
T ss_dssp EEEEECTTSCEEEECCSSSCCCHHHHHHHHHHC-
T ss_pred EEEEECCCCcEEEEEcCCCccCHHHHHHHHHHHh
Confidence 44555 799997 66 8888999888887654
No 136
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=41.09 E-value=38 Score=22.83 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=26.8
Q ss_pred EEEEEeccc-------eEEEEecCCHHHHHHHHHHHHHHHHhhhc
Q psy2814 138 VVLLIFVNG-------RIVITGAKSRSELHEAFDNIYPVLKSFKK 175 (176)
Q Consensus 138 ~t~~IF~sG-------kivitGaks~~~~~~a~~~i~~~L~~~r~ 175 (176)
+.+.|=..| .|+|+|. .+.+..|.+.|..++.+..+
T Consensus 48 ~~I~i~~~g~~~~~~~~V~I~G~--~e~v~~A~~~I~~iv~e~e~ 90 (97)
T 2ctl_A 48 VNIQFPDKDDGNQPQDQITITGY--EKNTEAARDAILRIVGELEQ 90 (97)
T ss_dssp CEEECCCTTTCSSCSSEEEEESC--HHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCCccEEEEEeC--HHHHHHHHHHHHHHHHHHHh
Confidence 444454555 8999996 77899999999888877643
No 137
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=41.07 E-value=21 Score=27.85 Aligned_cols=30 Identities=23% Similarity=0.584 Sum_probs=24.0
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIYP 168 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~~ 168 (176)
|+.+|..|+++ .+|..+.+.+.+.+....|
T Consensus 83 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~lp 114 (287)
T 3qou_A 83 TVYLFQNGQPVDGFQGPQPEEAIRALLDXVLP 114 (287)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHSC
T ss_pred eEEEEECCEEEEEeeCCCCHHHHHHHHHHHcC
Confidence 56678899887 7899999988888776543
No 138
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=40.92 E-value=43 Score=23.16 Aligned_cols=34 Identities=15% Similarity=0.364 Sum_probs=24.7
Q ss_pred EEEEEeccceEEE--EecCCHHHHHHHHHHHHHHHHhhh
Q psy2814 138 VVLLIFVNGRIVI--TGAKSRSELHEAFDNIYPVLKSFK 174 (176)
Q Consensus 138 ~t~~IF~sGkivi--tGaks~~~~~~a~~~i~~~L~~~r 174 (176)
.+++|-++|+|+- .|..+.+++.+.++.+ |.+||
T Consensus 129 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l---l~~~~ 164 (164)
T 2ggt_A 129 IMYLIGPDGEFLDYFGQNKRKGEIAASIATH---MRPYR 164 (164)
T ss_dssp EEEEECTTSCEEEEEETTCCHHHHHHHHHHH---HGGGC
T ss_pred eEEEECCCCeEEEEeCCCCCHHHHHHHHHHH---HHhcC
Confidence 6889999999974 5667777777776654 45553
No 139
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=40.84 E-value=31 Score=23.63 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=27.4
Q ss_pred eEEEEEeccc----eEEEEecCCHHHHHHHHHHHHHHHHhhh
Q psy2814 137 RVVLLIFVNG----RIVITGAKSRSELHEAFDNIYPVLKSFK 174 (176)
Q Consensus 137 ~~t~~IF~sG----kivitGaks~~~~~~a~~~i~~~L~~~r 174 (176)
.+.+.|=..| .|+|+|. .+.++.|.+.|..++.+..
T Consensus 47 g~~I~I~~~g~~~~~V~I~G~--~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 47 EVNIHVPAPELQSDIIAITGL--AANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp CCEEECCCTTTTCCEEEEEEC--HHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCcceEEEEcC--HHHHHHHHHHHHHHHhhHH
Confidence 3445555555 9999997 4889999999998887764
No 140
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=40.04 E-value=32 Score=20.89 Aligned_cols=22 Identities=45% Similarity=0.640 Sum_probs=18.2
Q ss_pred cceEEEEecCCHHHHHHHHHHH
Q psy2814 145 NGRIVITGAKSRSELHEAFDNI 166 (176)
Q Consensus 145 sGkivitGaks~~~~~~a~~~i 166 (176)
+|++...|..+.+++.+.++..
T Consensus 62 ~G~~~~~G~~~~~~l~~~l~~~ 83 (85)
T 1nho_A 62 NGVVRFVGAPSREELFEAINDE 83 (85)
T ss_dssp TTTEEEECSSCCHHHHHHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHH
Confidence 7888888998999998887764
No 141
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=40.01 E-value=40 Score=22.64 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=28.0
Q ss_pred eEEEEEecCc-----cEEEEcccCHHHHHHHHHHHHHHHHhc
Q psy2814 46 RTTCLAFQSG-----KLLILGAKHEHDCKLASRKFAKILKQL 82 (176)
Q Consensus 46 ~~t~~If~sG-----KivitGaks~~~~~~a~~~i~~~L~~~ 82 (176)
.+.+.|..+| .|.|+|. .+.+..|.+.+..++++.
T Consensus 47 g~~I~i~~~g~~~~~~V~I~G~--~e~v~~A~~~I~~i~~e~ 86 (95)
T 2ctm_A 47 KVDIRFPQSGAPDPNCVTVTGL--PENVEEAIDHILNLEEEY 86 (95)
T ss_dssp TCEEECCCTTCSCTTEEEEESC--HHHHHHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCCCCcEEEEEcC--HHHHHHHHHHHHHHHHHH
Confidence 4678888888 8999997 478888888888877654
No 142
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=39.83 E-value=21 Score=23.86 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=18.5
Q ss_pred EEEEecCccEE--EEcccCHHHHHHHHH
Q psy2814 48 TCLAFQSGKLL--ILGAKHEHDCKLASR 73 (176)
Q Consensus 48 t~~If~sGKiv--itGaks~~~~~~a~~ 73 (176)
++.+|.+|+++ ..|.. .+++...++
T Consensus 86 t~~~~~~G~~~~~~~G~~-~~~l~~~l~ 112 (114)
T 2oe3_A 86 TFVLGKDGQLIGKIIGAN-PTALEKGIK 112 (114)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHH
T ss_pred EEEEEeCCeEEEEEeCCC-HHHHHHHHH
Confidence 67788999997 78986 666655543
No 143
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=39.75 E-value=25 Score=23.82 Aligned_cols=26 Identities=15% Similarity=0.325 Sum_probs=22.3
Q ss_pred eEEEEecCCHHHHHHHHHHHHHHHHhhh
Q psy2814 147 RIVITGAKSRSELHEAFDNIYPVLKSFK 174 (176)
Q Consensus 147 kivitGaks~~~~~~a~~~i~~~L~~~r 174 (176)
.|+|+|.+ . .++.|.+.|..++.+.+
T Consensus 62 ~V~I~G~~-~-~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 62 TVVIRGPS-S-DVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp EEEEESCH-H-HHHHHHHHHHHHHHHHS
T ss_pred eEEEEcCH-H-HHHHHHHHHHHHHhhhh
Confidence 99999984 3 99999999999888765
No 144
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=39.73 E-value=42 Score=21.91 Aligned_cols=27 Identities=33% Similarity=0.596 Sum_probs=19.3
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNI 166 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i 166 (176)
|+.+|..|+++ +.|. +.+++++.++++
T Consensus 80 t~~~~~~G~~~~~~~G~-~~~~l~~~i~~~ 108 (109)
T 3f3q_A 80 TLLLFKNGKEVAKVVGA-NPAAIKQAIAAN 108 (109)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeCC-CHHHHHHHHHhh
Confidence 46667788774 4688 678888887764
No 145
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=39.53 E-value=38 Score=22.48 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=19.7
Q ss_pred EEEEecCccEE--EEcccCHHHHHHHHHHH
Q psy2814 48 TCLAFQSGKLL--ILGAKHEHDCKLASRKF 75 (176)
Q Consensus 48 t~~If~sGKiv--itGaks~~~~~~a~~~i 75 (176)
|+.+|.+|+++ ..|.. .+++...++++
T Consensus 94 t~~~~~~G~~~~~~~G~~-~~~l~~~i~~~ 122 (124)
T 1faa_A 94 TFKILKENSVVGEVTGAK-YDKLLEAIQAA 122 (124)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCC-HHHHHHHHHHh
Confidence 68899999986 67874 77666665543
No 146
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=39.27 E-value=44 Score=23.37 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=26.2
Q ss_pred EEEEEecCccEEEE--cccCHHHHHHHHHHHHHHHHhc
Q psy2814 47 TTCLAFQSGKLLIL--GAKHEHDCKLASRKFAKILKQL 82 (176)
Q Consensus 47 ~t~~If~sGKivit--Gaks~~~~~~a~~~i~~~L~~~ 82 (176)
.+++| .+|+|+-. |....++....++.+.+.|+.+
T Consensus 120 ~~~li-~~G~i~~~~~g~~~~~~~~~~~~~l~~~l~~l 156 (159)
T 2a4v_A 120 SHFIF-VDGKLKFKRVKISPEVSVNDAKKEVLEVAEKF 156 (159)
T ss_dssp EEEEE-ETTEEEEEEESCCHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEE-cCCEEEEEEccCCccccHHHHHHHHHHHHHHh
Confidence 68888 99999854 5555667777777777777654
No 147
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=38.91 E-value=15 Score=24.46 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=17.8
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAF 163 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~ 163 (176)
|+.+|..|+++ +.|..+.+++.+.+
T Consensus 90 t~~~~~~G~~~~~~~G~~~~~~l~~~l 116 (118)
T 1zma_A 90 GFVHITDGQINVRCDSSMSAQEIKDFA 116 (118)
T ss_dssp EEEEEETTEEEEECCTTCCHHHHHHHH
T ss_pred eEEEEECCEEEEEecCCCCHHHHHHHh
Confidence 55667788765 56888888877654
No 148
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=38.82 E-value=49 Score=23.98 Aligned_cols=32 Identities=9% Similarity=-0.037 Sum_probs=26.6
Q ss_pred eEEEEEecCccEE--EEcccCHHHHHHHHHHHHH
Q psy2814 46 RTTCLAFQSGKLL--ILGAKHEHDCKLASRKFAK 77 (176)
Q Consensus 46 ~~t~~If~sGKiv--itGaks~~~~~~a~~~i~~ 77 (176)
-.|+.+|++|+.+ +.|+.+.+++...+++++.
T Consensus 90 iPTlilFkdG~~v~~~vG~~~k~~l~~~l~~~l~ 123 (137)
T 2qsi_A 90 CPSLAVVQPERTLGVIAKIQDWSSYLAQIGAMLA 123 (137)
T ss_dssp SSEEEEEECCEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 4699999999997 4699999998888776663
No 149
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=38.72 E-value=35 Score=21.98 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=17.3
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNI 166 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i 166 (176)
|+.+|.+|+++ ..|. +.+++.+.++++
T Consensus 77 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 105 (107)
T 1gh2_A 77 TFQFFRNKVRIDQYQGA-DAVGLEEKIKQH 105 (107)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEeCC-CHHHHHHHHHHh
Confidence 45677888875 6686 455576666554
No 150
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=38.38 E-value=39 Score=24.66 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=24.1
Q ss_pred cceEEEE--ecCCHHHHHHHHHHHHHHHHh
Q psy2814 145 NGRIVIT--GAKSRSELHEAFDNIYPVLKS 172 (176)
Q Consensus 145 sGkivit--Gaks~~~~~~a~~~i~~~L~~ 172 (176)
+|+..+. |+.+.+++.++++.+....++
T Consensus 159 ng~~~~~~~G~~~~e~l~~~i~~l~~k~~~ 188 (192)
T 3h93_A 159 NGKYRFDIGSAGGPEETLKLADYLIEKERA 188 (192)
T ss_dssp TTTEEEEHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 9999988 999999999999988766544
No 151
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=37.79 E-value=61 Score=18.94 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=25.9
Q ss_pred EEEEcccCHHHHHHHHHHHHHHHHh-cCCCcccc
Q psy2814 57 LLILGAKHEHDCKLASRKFAKILKQ-LGHPIKYQ 89 (176)
Q Consensus 57 ivitGaks~~~~~~a~~~i~~~L~~-~g~~~~~~ 89 (176)
|.+.+.+|.++-+.-++.+.+.|.+ +|.+....
T Consensus 5 i~~~~grs~eqk~~l~~~i~~~l~~~lg~~~~~v 38 (61)
T 2opa_A 5 VKMLEGRTDEQKRNLVEKVTEAVKETTGASEEKI 38 (61)
T ss_dssp EEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcCeE
Confidence 4556677999999999999999987 68875543
No 152
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=37.50 E-value=40 Score=22.45 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=22.4
Q ss_pred CccEEEEcccCHHHHHHHHHHHHHHHHhc
Q psy2814 54 SGKLLILGAKHEHDCKLASRKFAKILKQL 82 (176)
Q Consensus 54 sGKivitGaks~~~~~~a~~~i~~~L~~~ 82 (176)
+|.|.|+|. .+.+..|.+.+..++++.
T Consensus 59 ~~~V~I~G~--~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 59 SNQIKITGT--KEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CCEEEEEEC--HHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEC--HHHHHHHHHHHHHHhhcc
Confidence 689999997 888888888888887653
No 153
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=36.97 E-value=30 Score=23.78 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=21.3
Q ss_pred ccEEEEcccCHHHHHHHHHHHHHHHHhc
Q psy2814 55 GKLLILGAKHEHDCKLASRKFAKILKQL 82 (176)
Q Consensus 55 GKivitGaks~~~~~~a~~~i~~~L~~~ 82 (176)
+.|.|+| +.++++.|.+.+..++++.
T Consensus 55 r~V~I~G--~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 55 KLFIIRG--SPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp EEEEEES--CHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEEC--CHHHHHHHHHHHHHHHhcc
Confidence 6889999 7889999988888777654
No 154
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=36.66 E-value=21 Score=21.88 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=18.1
Q ss_pred cceEEEEecCCHHHHHHHHHHH
Q psy2814 145 NGRIVITGAKSRSELHEAFDNI 166 (176)
Q Consensus 145 sGkivitGaks~~~~~~a~~~i 166 (176)
+|++...|..+.+++.+.+++.
T Consensus 63 ~G~~~~~G~~~~~~l~~~l~~~ 84 (85)
T 1fo5_A 63 NGDVEFIGAPTKEALVEAIKKR 84 (85)
T ss_dssp TTEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEeeecCCCHHHHHHHHHHh
Confidence 7888788988999998887654
No 155
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=36.66 E-value=69 Score=22.36 Aligned_cols=32 Identities=3% Similarity=0.067 Sum_probs=26.0
Q ss_pred EEEEEeccceEE--EEecCCHHHHHHHHHHHHHH
Q psy2814 138 VVLLIFVNGRIV--ITGAKSRSELHEAFDNIYPV 169 (176)
Q Consensus 138 ~t~~IF~sGkiv--itGaks~~~~~~a~~~i~~~ 169 (176)
-|+.+|.+|+.+ ++|+.+.+++...++.++..
T Consensus 78 PT~i~f~~G~ev~Ri~G~~~~~~f~~~L~~~l~~ 111 (116)
T 3dml_A 78 PTFVLMAGDVESGRLEGYPGEDFFWPMLARLIGQ 111 (116)
T ss_dssp SEEEEEETTEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEeeecCCCCHHHHHHHHHHHHhh
Confidence 378888898874 78999999999988887543
No 156
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=36.58 E-value=60 Score=22.29 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=21.7
Q ss_pred eEEEEecCCHHHHHHHHHHHHHHHHhhh
Q psy2814 147 RIVITGAKSRSELHEAFDNIYPVLKSFK 174 (176)
Q Consensus 147 kivitGaks~~~~~~a~~~i~~~L~~~r 174 (176)
.|+|+|. ++.++.|.+.|..++.+..
T Consensus 57 ~V~I~G~--~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 57 IAHIMGP--PDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp EEEEESS--HHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEeC--HHHHHHHHHHHHHHHhccc
Confidence 5889986 8899999999999887653
No 157
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=36.33 E-value=52 Score=28.38 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=43.4
Q ss_pred ccCCCceE----EEEEcCC--e-E------------------EEEEe-cCccEEEEcccCHHHHHHHHHHHHHHHH--hc
Q psy2814 31 NPGKFHGL----IMKILNP--R-T------------------TCLAF-QSGKLLILGAKHEHDCKLASRKFAKILK--QL 82 (176)
Q Consensus 31 ~P~~fpgl----~~R~~~p--~-~------------------t~~If-~sGKivitGaks~~~~~~a~~~i~~~L~--~~ 82 (176)
.|+.||++ .+|++-| + . .+.+- +.|.|++.|. +.+++... ...|. +.
T Consensus 85 ~~~~~p~~~~~~tvRv~~P~Gr~lt~~qLr~LadIAekyG~G~irlTgtrqnI~l~gv-~~e~l~~i----~~eL~~~~~ 159 (418)
T 3mm5_A 85 LGEQIPEVEHFHTMRINQPSGWFYSTKALRGLCDVWEKWGSGLTNFHGSTGDIIFLGT-RSEYLQPC----FEDLGNLEI 159 (418)
T ss_dssp TTTTCGGGSBCEEEEECCCGGGEEEHHHHHHHHHHHHHHSCSEEETTCSSSCEEEEEE-CHHHHHHH----HHHHHHSSS
T ss_pred CCccCCCcceEEEEEEeCCCCcccCHHHHHHHHHHHHHhCCCEEEEecCCCceEeCCC-CHHHHHHH----HHHHhcccc
Confidence 67888885 5888877 2 2 44455 5688999998 66666554 44466 78
Q ss_pred CCCcccceeeeeeEEEE
Q psy2814 83 GHPIKYQGFKIHNIVCT 99 (176)
Q Consensus 83 g~~~~~~~~~i~nIvas 99 (176)
|+++....-.+.|++|.
T Consensus 160 Gl~~ggsG~~vRni~aC 176 (418)
T 3mm5_A 160 PFDIGGSGSDLRTPSAC 176 (418)
T ss_dssp CCCBCCCSSSBCCCEEC
T ss_pred cCCcCCccccccceEec
Confidence 88765544567788765
No 158
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=36.31 E-value=40 Score=23.66 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=14.6
Q ss_pred EEecC-CHHHHHHHHHHHHHHH
Q psy2814 150 ITGAK-SRSELHEAFDNIYPVL 170 (176)
Q Consensus 150 itGak-s~~~~~~a~~~i~~~L 170 (176)
+.|+- +.+++.+.++.+++..
T Consensus 102 ~~g~~~~~~~l~~~i~~~~~~~ 123 (142)
T 1qgv_A 102 INWAMEDKQEMVDIIETVYRGA 123 (142)
T ss_dssp CCSCCSCHHHHHHHHHHHHHHH
T ss_pred eeeecCcHHHHHHHHHHHHHHH
Confidence 45665 3788888888777653
No 159
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=42.45 E-value=7.5 Score=24.85 Aligned_cols=28 Identities=39% Similarity=0.750 Sum_probs=20.4
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNI 166 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i 166 (176)
++.+|.+|+++ ..|..+.+++.+.++.+
T Consensus 76 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~ 105 (106)
T 2yj7_A 76 TLLLFKNGQVVDRLVGAQPKEALKERIDKH 105 (106)
Confidence 56677888876 57888888887776653
No 160
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.13 E-value=46 Score=22.17 Aligned_cols=31 Identities=19% Similarity=0.165 Sum_probs=23.0
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHHHHH
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRKFAK 77 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~i~~ 77 (176)
.|+.+|..|+.+ ..|..+.+++...+++++.
T Consensus 85 Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~ 117 (133)
T 1x5d_A 85 PTIKIFQKGESPVDYDGGRTRSDIVSRALDLFS 117 (133)
T ss_dssp SEEEEEETTEEEEEECSCCSHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCceEEecCCCCHHHHHHHHHHHhh
Confidence 477788889865 6688888888777666543
No 161
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=36.05 E-value=65 Score=22.52 Aligned_cols=33 Identities=9% Similarity=-0.105 Sum_probs=27.3
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHHHHHHH
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRKFAKIL 79 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~i~~~L 79 (176)
.|+.+|.+|+.+ ++|+.+.++....+++++..+
T Consensus 78 PT~i~f~~G~ev~Ri~G~~~~~~f~~~L~~~l~~~ 112 (116)
T 3dml_A 78 PTFVLMAGDVESGRLEGYPGEDFFWPMLARLIGQA 112 (116)
T ss_dssp SEEEEEETTEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEeeecCCCCHHHHHHHHHHHHhhc
Confidence 688999999975 789999999999888776543
No 162
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=35.96 E-value=26 Score=25.05 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=19.5
Q ss_pred EeccceEEEEe--cCCHHHHHHHHHHHH
Q psy2814 142 IFVNGRIVITG--AKSRSELHEAFDNIY 167 (176)
Q Consensus 142 IF~sGkivitG--aks~~~~~~a~~~i~ 167 (176)
+|-+||.++.| +.+.+++.+.++.|+
T Consensus 154 fiINGky~v~~~~~~s~e~~~~~i~~Ll 181 (184)
T 4dvc_A 154 VVVNNRYLVQGQSAKSLDEYFDLVNYLL 181 (184)
T ss_dssp EEETTTEEECGGGCSSHHHHHHHHHHHT
T ss_pred EEECCEEeeCCcCCCCHHHHHHHHHHHH
Confidence 55699988765 678888888777654
No 163
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=35.83 E-value=48 Score=24.14 Aligned_cols=28 Identities=11% Similarity=0.017 Sum_probs=24.3
Q ss_pred CccEEEE--cccCHHHHHHHHHHHHHHHHh
Q psy2814 54 SGKLLIL--GAKHEHDCKLASRKFAKILKQ 81 (176)
Q Consensus 54 sGKivit--Gaks~~~~~~a~~~i~~~L~~ 81 (176)
+|+..+. |+.+.++....++.++...++
T Consensus 159 ng~~~~~~~G~~~~e~l~~~i~~l~~k~~~ 188 (192)
T 3h93_A 159 NGKYRFDIGSAGGPEETLKLADYLIEKERA 188 (192)
T ss_dssp TTTEEEEHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 9999998 999999999999888876543
No 164
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=35.71 E-value=62 Score=21.00 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=22.2
Q ss_pred cceEEEEecCCHHHHHHHHHHHHHHHHhh
Q psy2814 145 NGRIVITGAKSRSELHEAFDNIYPVLKSF 173 (176)
Q Consensus 145 sGkivitGaks~~~~~~a~~~i~~~L~~~ 173 (176)
.+.|.|+|. ++.+..|.+.|..++.+-
T Consensus 50 ~r~v~I~G~--~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 50 NRRVTITGS--PAATQAAQYLISQRVTYE 76 (87)
T ss_dssp EEEEEEESS--HHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEcC--HHHHHHHHHHHHHHHhcc
Confidence 367889996 889999999999888753
No 165
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=35.36 E-value=33 Score=25.07 Aligned_cols=31 Identities=13% Similarity=0.108 Sum_probs=25.5
Q ss_pred CccEEEEcccCHHHHHHHHHHHHHHHHhcCCC
Q psy2814 54 SGKLLILGAKHEHDCKLASRKFAKILKQLGHP 85 (176)
Q Consensus 54 sGKivitGaks~~~~~~a~~~i~~~L~~~g~~ 85 (176)
.=-|+|||. |..+++..++.+.+.|++.|..
T Consensus 51 DyfVIatg~-S~rqv~Aiad~v~~~lk~~g~~ 81 (136)
T 3ups_A 51 DYMVIASGR-SSRQVTAMAQKLADRIKAATGY 81 (136)
T ss_dssp SEEEEEECS-SHHHHHHHHHHHHHHHHHHHCC
T ss_pred CEEEEEEcC-CHHHHHHHHHHHHHHHHHcCCc
Confidence 445777777 9999999999999999987753
No 166
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=34.96 E-value=17 Score=25.02 Aligned_cols=30 Identities=20% Similarity=0.172 Sum_probs=23.3
Q ss_pred EEEEEe-cCccEE----EEcccCHHHHHHHHHHHH
Q psy2814 47 TTCLAF-QSGKLL----ILGAKHEHDCKLASRKFA 76 (176)
Q Consensus 47 ~t~~If-~sGKiv----itGaks~~~~~~a~~~i~ 76 (176)
.++.+| .+|+++ ..|..+.+++...++++.
T Consensus 93 Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~ 127 (134)
T 2fwh_A 93 PTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQ 127 (134)
T ss_dssp SEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC-
T ss_pred CEEEEECCCCCEeeeeeeeeccCHHHHHHHHHhcC
Confidence 367788 999996 899999998887766543
No 167
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=34.86 E-value=41 Score=24.89 Aligned_cols=31 Identities=3% Similarity=-0.005 Sum_probs=24.9
Q ss_pred EEEEEecCccE--EEEcccCHHHHHHHHHHHHH
Q psy2814 47 TTCLAFQSGKL--LILGAKHEHDCKLASRKFAK 77 (176)
Q Consensus 47 ~t~~If~sGKi--vitGaks~~~~~~a~~~i~~ 77 (176)
.|+.|+.+|+. .+.|+.+.++...+++++..
T Consensus 178 Pt~~i~~~G~~~~~~~G~~~~~~l~~~l~~~~~ 210 (216)
T 2in3_A 178 PALVVESGTDRYLITTGYRPIEALRQLLDTWLQ 210 (216)
T ss_dssp SEEEEEETTEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred ceEEEEECCEEEEeccCCCCHHHHHHHHHHHHH
Confidence 35667789998 78999999999998776653
No 168
>3it4_B Arginine biosynthesis bifunctional protein ARGJ beta chain; ornithine acetyltransferase, structural genomics; 1.70A {Mycobacterium tuberculosis} PDB: 3it6_B
Probab=34.71 E-value=31 Score=27.07 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=19.0
Q ss_pred EEEEcccCHHHHHHHHHHHHH
Q psy2814 57 LLILGAKHEHDCKLASRKFAK 77 (176)
Q Consensus 57 ivitGaks~~~~~~a~~~i~~ 77 (176)
|.++||+|.++|+.+++.++.
T Consensus 89 v~V~gA~s~~~A~~iA~~Ia~ 109 (205)
T 3it4_B 89 VTVTGAATEDDALVAARQIAR 109 (205)
T ss_dssp EEEEEESSHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHhc
Confidence 789999999999999998874
No 169
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=34.63 E-value=40 Score=23.02 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=21.7
Q ss_pred EEEEe-ccceEE-EEecCCHHHHHHHHHHHHH
Q psy2814 139 VLLIF-VNGRIV-ITGAKSRSELHEAFDNIYP 168 (176)
Q Consensus 139 t~~IF-~sGkiv-itGaks~~~~~~a~~~i~~ 168 (176)
|+.+| .+|+++ ..|..+.+++.+.+++..+
T Consensus 95 t~~~~~~~G~~~~~~G~~~~~~l~~~l~~~~~ 126 (136)
T 2l5l_A 95 SILFIPMEGKPEMAQGAMPKASFKKAIDEFLL 126 (136)
T ss_dssp EEEEECSSSCCEEEESCCCHHHHHHHHHHHHT
T ss_pred EEEEECCCCcEEEEeCCCCHHHHHHHHHHHhh
Confidence 45566 677753 5788899999888877653
No 170
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=34.60 E-value=54 Score=22.89 Aligned_cols=31 Identities=10% Similarity=0.234 Sum_probs=24.2
Q ss_pred EEEEEeccceEE--EEecCCHHHHHHHHHHHHH
Q psy2814 138 VVLLIFVNGRIV--ITGAKSRSELHEAFDNIYP 168 (176)
Q Consensus 138 ~t~~IF~sGkiv--itGaks~~~~~~a~~~i~~ 168 (176)
.+++|.++|+|+ ..|..+.+++.+.++.++.
T Consensus 132 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~ 164 (171)
T 2rli_A 132 AIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMA 164 (171)
T ss_dssp EEEEECTTSCEEEEEESSCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 688899999997 4577788888887776654
No 171
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=33.98 E-value=48 Score=22.41 Aligned_cols=29 Identities=17% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEeccceEE-EEecCCHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV-ITGAKSRSELHEAFDNIY 167 (176)
Q Consensus 139 t~~IF~sGkiv-itGaks~~~~~~a~~~i~ 167 (176)
|+.+|..|++. ..|..+.+++.+.++.+.
T Consensus 94 t~~~~~~G~~~~~~g~~~~~~l~~~l~~~~ 123 (140)
T 2dj1_A 94 TIKILKKGQAVDYDGSRTQEEIVAKVREVS 123 (140)
T ss_dssp EEEEEETTEEEECCSCCCHHHHHHHHHHHH
T ss_pred eEEEEECCcEEEcCCCCCHHHHHHHHHHhc
Confidence 44556777732 468888888888877654
No 172
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=33.84 E-value=64 Score=21.82 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=21.4
Q ss_pred cceEEEEecCCHHHHHHHHHHHHHHHHh
Q psy2814 145 NGRIVITGAKSRSELHEAFDNIYPVLKS 172 (176)
Q Consensus 145 sGkivitGaks~~~~~~a~~~i~~~L~~ 172 (176)
.|.|+|+|. .+.++.|.+.|..++.+
T Consensus 61 ~~~V~I~G~--~~~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 61 SRLIKISGT--QKEVAAAKHLILEKVSE 86 (104)
T ss_dssp EEEEEEEEE--HHHHHHHHHHHHHHHHH
T ss_pred cceEEEEcC--HHHHHHHHHHHHHHHhh
Confidence 688999997 44789999999888764
No 173
>3u27_C Microcompartments protein; structural genomics, PSI-biology, MCSG, alpha-beta-alpha FOL bacterial microcompartment, shell protein; 1.85A {Leptotrichia buccalis c-1013-b}
Probab=33.81 E-value=47 Score=26.32 Aligned_cols=28 Identities=11% Similarity=0.336 Sum_probs=24.5
Q ss_pred cceEE-EEecCCHHHHHHHHHHHHHHHHh
Q psy2814 145 NGRIV-ITGAKSRSELHEAFDNIYPVLKS 172 (176)
Q Consensus 145 sGkiv-itGaks~~~~~~a~~~i~~~L~~ 172 (176)
+||++ |+|..++++++.|++.....+.+
T Consensus 83 ~G~~i~iigG~dvs~V~~av~~~~~~~~~ 111 (220)
T 3u27_C 83 AGEVIGILSGPTPAEVKSGLAAAVDFIEN 111 (220)
T ss_dssp TTTEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence 58888 99998899999999998887765
No 174
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=33.57 E-value=42 Score=21.08 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=20.0
Q ss_pred cceEEEEecCCHHHHHHHHHHHHHHHH
Q psy2814 145 NGRIVITGAKSRSELHEAFDNIYPVLK 171 (176)
Q Consensus 145 sGkivitGaks~~~~~~a~~~i~~~L~ 171 (176)
.+.|.|+|. ++.+..|.+.|..++.
T Consensus 50 ~~~v~I~G~--~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 50 NRRVTITGS--PAATQAAQYLISQRVT 74 (76)
T ss_dssp EEEEEEEES--HHHHHHHHHHHHHHCC
T ss_pred eeEEEEEeC--HHHHHHHHHHHHHHHh
Confidence 367889996 8899999988887654
No 175
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=33.18 E-value=74 Score=18.55 Aligned_cols=33 Identities=15% Similarity=0.340 Sum_probs=25.9
Q ss_pred EEEEcccCHHHHHHHHHHHHHHHHh-cCCCcccc
Q psy2814 57 LLILGAKHEHDCKLASRKFAKILKQ-LGHPIKYQ 89 (176)
Q Consensus 57 ivitGaks~~~~~~a~~~i~~~L~~-~g~~~~~~ 89 (176)
|.+.+.+|.|+-+.-++.+.+.|.+ +|.+....
T Consensus 5 I~~~~grs~e~k~~l~~~i~~~l~~~lg~p~~~v 38 (62)
T 1otf_A 5 LYIIEGRTDEQKETLIRQVSEAMANSLDAPLERV 38 (62)
T ss_dssp EEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGC
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccE
Confidence 4556677999999999999999987 68875543
No 176
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=33.11 E-value=50 Score=23.90 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.3
Q ss_pred eccceEEEEecCCHHHHHHHHHHHHHHH
Q psy2814 143 FVNGRIVITGAKSRSELHEAFDNIYPVL 170 (176)
Q Consensus 143 F~sGkivitGaks~~~~~~a~~~i~~~L 170 (176)
+-+|+.++.|+ +.+++.++++.+...-
T Consensus 160 ving~~~~~g~-~~~~l~~~i~~~~~~~ 186 (193)
T 2rem_A 160 VVNGRYMVTGH-DFEDTLRITDYLVSRE 186 (193)
T ss_dssp EETTTEEECCS-SHHHHHHHHHHHHHHH
T ss_pred EECCEEEecCC-CHHHHHHHHHHHHHHH
Confidence 34899988999 9999999999887553
No 177
>1xhk_A Putative protease LA homolog; LON protease, ATP dependent, catalytic DYAD, hydrolase; HET: MES; 1.90A {Methanocaldococcus jannaschii} SCOP: d.14.1.10
Probab=32.12 E-value=49 Score=24.98 Aligned_cols=23 Identities=22% Similarity=0.078 Sum_probs=18.7
Q ss_pred ccEEEEcccCHHHHHHHHHHHHHHHHh
Q psy2814 55 GKLLILGAKHEHDCKLASRKFAKILKQ 81 (176)
Q Consensus 55 GKivitGaks~~~~~~a~~~i~~~L~~ 81 (176)
|+..+|| +..+++.+++...|++
T Consensus 39 g~~~~tG----~~~res~~~~~a~l~~ 61 (187)
T 1xhk_A 39 HLLNISG----DIAKHSITLASALSKK 61 (187)
T ss_dssp EEESSCH----HHHHHHHHHHHHHHHH
T ss_pred CceEEec----HHHHHHHHHHHHHHhh
Confidence 7888888 7778888888888887
No 178
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=31.83 E-value=58 Score=24.46 Aligned_cols=29 Identities=38% Similarity=0.591 Sum_probs=23.5
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIY 167 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~ 167 (176)
|+.+|..|+++ ..|..+.+++.+.++.+.
T Consensus 87 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 117 (222)
T 3dxb_A 87 TLLLFKNGEVAATKVGALSKGQLKEFLDANL 117 (222)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred EEEEEECCeEEEEeccccChHHHHHHHHhhc
Confidence 56678889885 789999999998887764
No 179
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=31.28 E-value=41 Score=24.23 Aligned_cols=33 Identities=9% Similarity=0.119 Sum_probs=26.4
Q ss_pred EEEEeccceEEE--EecCCHHHHHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIVI--TGAKSRSELHEAFDNIYPVLK 171 (176)
Q Consensus 139 t~~IF~sGkivi--tGaks~~~~~~a~~~i~~~L~ 171 (176)
+++|.+.|+|+- .|..+.+++.+.++.++..+.
T Consensus 139 ~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL~~~~ 173 (180)
T 3kij_A 139 KYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQVI 173 (180)
T ss_dssp EEEECTTSCEEEEECTTCCGGGTHHHHHHHHHHHH
T ss_pred EEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 799999999964 477788888888887776554
No 180
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=31.19 E-value=38 Score=25.06 Aligned_cols=24 Identities=17% Similarity=0.428 Sum_probs=20.8
Q ss_pred ccceEEE--EecCCHHHHHHHHHHHH
Q psy2814 144 VNGRIVI--TGAKSRSELHEAFDNIY 167 (176)
Q Consensus 144 ~sGkivi--tGaks~~~~~~a~~~i~ 167 (176)
-+|+..+ .|+.+.+++.++++.+.
T Consensus 158 vng~~~v~~~Ga~~~e~~~~~i~~ll 183 (185)
T 3feu_A 158 VNGKYNVLIGGHDDPKQIADTIRYLL 183 (185)
T ss_dssp ETTTEEECGGGCSSHHHHHHHHHHHH
T ss_pred ECCEEEEecCCCCCHHHHHHHHHHHH
Confidence 3899988 89999999999988764
No 181
>3nec_A Profilin, inflammatory profilin; actin-binding, actin-binding protein; HET: MSE; 1.70A {Toxoplasma gondii}
Probab=31.13 E-value=92 Score=23.29 Aligned_cols=42 Identities=12% Similarity=0.219 Sum_probs=30.3
Q ss_pred cCCeEEEEEecCcc-EEEEcccC------HHHHHHHHHHHHHHHHhcCC
Q psy2814 43 LNPRTTCLAFQSGK-LLILGAKH------EHDCKLASRKFAKILKQLGH 84 (176)
Q Consensus 43 ~~p~~t~~If~sGK-ivitGaks------~~~~~~a~~~i~~~L~~~g~ 84 (176)
+.++.-+.|..++. -++.|.-. ..++..++.++++.|.+.||
T Consensus 118 kK~~~Gv~i~KT~~~aiVI~~y~e~~~~~~g~~~~~ve~ladYL~~~GY 166 (166)
T 3nec_A 118 ARSKGGAHLIKTPNGSIVIALYDEEKEQDKGNSRTSALAFAEYLHQSGY 166 (166)
T ss_dssp EETTEEEEEEECTTSEEEEEEEEGGGTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCCceEEEEEeCCCEEEEEEccCCCccCHHHHHHHHHHHHHHHHHcCC
Confidence 34455577778887 44444433 34999999999999999885
No 182
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=30.98 E-value=83 Score=27.33 Aligned_cols=65 Identities=15% Similarity=0.265 Sum_probs=43.5
Q ss_pred ccCCCceE----EEEEcCC--e-E------------------EEEEecC-ccEEEEcccCHHHHHHHHHHHHHHHH-hcC
Q psy2814 31 NPGKFHGL----IMKILNP--R-T------------------TCLAFQS-GKLLILGAKHEHDCKLASRKFAKILK-QLG 83 (176)
Q Consensus 31 ~P~~fpgl----~~R~~~p--~-~------------------t~~If~s-GKivitGaks~~~~~~a~~~i~~~L~-~~g 83 (176)
.|+.||++ .+|++-| + . .+.+-.+ |.|++.|. +.+++...+ ..|. +.|
T Consensus 87 ~pd~fP~v~~~~tVRV~~P~Gr~lTaeqLR~LadIAekyG~G~irlTt~rqNI~L~gi-~~e~le~l~----~eL~~~~G 161 (437)
T 3or1_A 87 QPEMFPGVAHFHTVRLAQPAAKYYTAEYLEAICDVWDLRGSGLTNMHGSTGDIVLLGT-QTPQLEEIF----FEMTHNLN 161 (437)
T ss_dssp CTTTCGGGSBCCEEEECCCGGGEEEHHHHHHHHHHHHHHSCSEEESCCSSSCEEEECC-CGGGHHHHH----HHHHHHSC
T ss_pred CcccCcCcceEEEEEEeCCCCCccCHHHHHHHHHHHHHhCCCEEEEcCccceEEEecC-CHHHHHHHH----HHHHhhcC
Confidence 47899985 5788877 2 1 4455533 88999998 666665543 4455 788
Q ss_pred CCcccceeeeeeEEEEe
Q psy2814 84 HPIKYQGFKIHNIVCTC 100 (176)
Q Consensus 84 ~~~~~~~~~i~nIvas~ 100 (176)
+++....-.+.|++|.-
T Consensus 162 l~~ggsG~~vRnivaC~ 178 (437)
T 3or1_A 162 TDLGGSGSNLRTPESCL 178 (437)
T ss_dssp CCBCCCSSSBCCCEECC
T ss_pred cCccccCCcceeeeccc
Confidence 88665555678887653
No 183
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=30.81 E-value=64 Score=23.00 Aligned_cols=31 Identities=3% Similarity=0.006 Sum_probs=25.0
Q ss_pred EEEEEeccceEE--EEecCCHHHHHHHHHHHHH
Q psy2814 138 VVLLIFVNGRIV--ITGAKSRSELHEAFDNIYP 168 (176)
Q Consensus 138 ~t~~IF~sGkiv--itGaks~~~~~~a~~~i~~ 168 (176)
.+++|.+.|+++ ..|..+.+++.+.++.++.
T Consensus 149 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~ 181 (183)
T 3lwa_A 149 TTIVLDKQHRPAAVFLREVTSKDVLDVALPLVD 181 (183)
T ss_dssp EEEEECTTSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence 578899999996 5687889999888887653
No 184
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=30.65 E-value=75 Score=22.76 Aligned_cols=35 Identities=14% Similarity=0.055 Sum_probs=28.5
Q ss_pred EEEEEecCccEEEE--cccCHHHHHHHHHHHHHHHHh
Q psy2814 47 TTCLAFQSGKLLIL--GAKHEHDCKLASRKFAKILKQ 81 (176)
Q Consensus 47 ~t~~If~sGKivit--Gaks~~~~~~a~~~i~~~L~~ 81 (176)
.+++|..+|+|+-. |..+.++....++++++.++.
T Consensus 135 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~l~~ 171 (176)
T 3kh7_A 135 ETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQQLLD 171 (176)
T ss_dssp EEEEECTTCBEEEEEESCCCHHHHHHHTHHHHHHHHC
T ss_pred eEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHHHHhh
Confidence 57788899999754 888999999988888877653
No 185
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=30.45 E-value=90 Score=21.34 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=25.1
Q ss_pred EEEEEecCc------cEEEEcccCHHHHHHHHHHHHHHHHhc
Q psy2814 47 TTCLAFQSG------KLLILGAKHEHDCKLASRKFAKILKQL 82 (176)
Q Consensus 47 ~t~~If~sG------KivitGaks~~~~~~a~~~i~~~L~~~ 82 (176)
|.+.|-..+ .|.|+|. .++++.|.+.+..++++.
T Consensus 42 akI~I~~~~~~~~er~V~I~G~--~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 42 VRIQFKQDDGTGPEKIAHIMGP--PDRCEHAARIINDLLQSL 81 (106)
T ss_dssp CEEEECSSCSSSSEEEEEEESS--HHHHHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCCceeEEEEEeC--HHHHHHHHHHHHHHHhcc
Confidence 455555443 5889986 788888888888888764
No 186
>1vra_B Arginine biosynthesis bifunctional protein ARGJ; 10175521, S genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans}
Probab=30.32 E-value=33 Score=27.13 Aligned_cols=21 Identities=10% Similarity=0.395 Sum_probs=18.9
Q ss_pred EEEEcccCHHHHHHHHHHHHH
Q psy2814 57 LLILGAKHEHDCKLASRKFAK 77 (176)
Q Consensus 57 ivitGaks~~~~~~a~~~i~~ 77 (176)
|.++||+|.++|+.+++.++.
T Consensus 95 v~V~GA~s~~~A~~iA~sIa~ 115 (215)
T 1vra_B 95 VEVTGAANDQEAGMVAKQIVG 115 (215)
T ss_dssp EEEEEESSHHHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHHHHcC
Confidence 689999999999999988874
No 187
>2v4i_B Glutamate N-acetyltransferase 2 beta chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_D* 2yep_B* 2vzk_B* 2w4n_B* 2yep_F*
Probab=30.15 E-value=33 Score=27.06 Aligned_cols=21 Identities=14% Similarity=0.362 Sum_probs=18.8
Q ss_pred EEEEcccCHHHHHHHHHHHHH
Q psy2814 57 LLILGAKHEHDCKLASRKFAK 77 (176)
Q Consensus 57 ivitGaks~~~~~~a~~~i~~ 77 (176)
|.++||+|.++|+.+++.++.
T Consensus 88 V~V~GA~s~~~A~~vA~sIa~ 108 (213)
T 2v4i_B 88 VQVTGARDDAQAKRVGKTVVN 108 (213)
T ss_dssp EEEEEESSHHHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHHHHcc
Confidence 689999999999999988874
No 188
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=30.09 E-value=86 Score=21.52 Aligned_cols=30 Identities=13% Similarity=0.030 Sum_probs=23.0
Q ss_pred EEEEEecCccEEE--EcccCHHHHHHHHHHHH
Q psy2814 47 TTCLAFQSGKLLI--LGAKHEHDCKLASRKFA 76 (176)
Q Consensus 47 ~t~~If~sGKivi--tGaks~~~~~~a~~~i~ 76 (176)
.+++|..+|+++- .|..+.+++...+++++
T Consensus 129 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 160 (164)
T 2ggt_A 129 IMYLIGPDGEFLDYFGQNKRKGEIAASIATHM 160 (164)
T ss_dssp EEEEECTTSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred eEEEECCCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 7888999999975 46777777777766654
No 189
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=29.99 E-value=71 Score=23.57 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=61.4
Q ss_pred EEEEEecCcc---EEEEcccCHHHHHHHHHHHHHHHHhcCCCccc----------ceeeeeeEEEEeeeCcc---cCHHH
Q psy2814 47 TTCLAFQSGK---LLILGAKHEHDCKLASRKFAKILKQLGHPIKY----------QGFKIHNIVCTCDVRFP---VKLDA 110 (176)
Q Consensus 47 ~t~~If~sGK---ivitGaks~~~~~~a~~~i~~~L~~~g~~~~~----------~~~~i~nIvas~~l~~~---i~L~~ 110 (176)
.|+.+|.+|+ ....|..+.+++..-+..+...-.. ...... ....+.+..++-+-+|. =.+++
T Consensus 80 Pt~~~~~~g~~~~~~~~G~~~~~~l~~~l~~~l~~~~~-~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~ 158 (226)
T 1a8l_A 80 PATTITQDGKDFGVRYFGLPAGHEFAAFLEDIVDVSRE-ETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHK 158 (226)
T ss_dssp SEEEEEETTBCCSEEEESCCCTTHHHHHHHHHHHHHHT-CCCCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHH
T ss_pred ceEEEEcCCceeeEEEeccCcHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHH
Confidence 4788898884 6688998888777665554432111 111111 22235555555443332 12455
Q ss_pred HHHHcC----CCc---ccCCCCCceeE--EEEcCCeEEEEEeccceEE--EEecCCHHHHHHHHHHH
Q psy2814 111 LHHVHS----QFS---SYEPELFPGLI--YRMVKPRVVLLIFVNGRIV--ITGAKSRSELHEAFDNI 166 (176)
Q Consensus 111 l~~~~~----~~~---~YePe~fpgl~--~r~~~~~~t~~IF~sGkiv--itGaks~~~~~~a~~~i 166 (176)
++..+. .+. ..+-+.++.+. |.+.. -.|+.+|.+|+.+ ..|..+.+++.+.++..
T Consensus 159 l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 224 (226)
T 1a8l_A 159 FAIENTKAGKGKILGDMVEAIEYPEWADQYNVMA-VPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSA 224 (226)
T ss_dssp HHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCS-SCEEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred HHHhcccccCCcEEEEEEEcccCHHHHHhCCCcc-cCeEEEEeCCceeEEEcCCCCHHHHHHHHHHh
Confidence 554332 111 11111112111 22222 2367888999865 67999988888777654
No 190
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=29.67 E-value=74 Score=21.59 Aligned_cols=40 Identities=20% Similarity=0.386 Sum_probs=28.6
Q ss_pred CCeEEEEEecCc-cEEEEc-ccCHHHHH-HHHHHHHHHHHhcC
Q psy2814 44 NPRTTCLAFQSG-KLLILG-AKHEHDCK-LASRKFAKILKQLG 83 (176)
Q Consensus 44 ~p~~t~~If~sG-KivitG-aks~~~~~-~a~~~i~~~L~~~g 83 (176)
+|.-++.++-+| +..-+| .+|..+|+ .|++..+..|.+.+
T Consensus 35 ~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~ 77 (99)
T 1whq_A 35 RQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRIN 77 (99)
T ss_dssp SEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhhC
Confidence 466788888999 677777 56777777 45566667777655
No 191
>3i96_A Ethanolamine utilization protein EUTS; structural protein; HET: NHE; 1.65A {Escherichia coli} PDB: 3ia0_A
Probab=29.61 E-value=74 Score=22.72 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.4
Q ss_pred cceEEEEecCCHHHHHHHHHHHHHHHHh
Q psy2814 145 NGRIVITGAKSRSELHEAFDNIYPVLKS 172 (176)
Q Consensus 145 sGkivitGaks~~~~~~a~~~i~~~L~~ 172 (176)
+|.++++| +.++++.|++.....+.+
T Consensus 74 ~G~vii~G--dVsaV~aAvea~~~~~~~ 99 (119)
T 3i96_A 74 SGALVIYG--SVGAVEEALSQTVSGLGR 99 (119)
T ss_dssp TCEEEEEE--CHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEE--CHHHHHHHHHHHHHHHhh
Confidence 58889999 799999999998887754
No 192
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=29.60 E-value=33 Score=22.20 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=19.2
Q ss_pred EEEEeccce----EEEEecCCHHHHHHHHHH
Q psy2814 139 VLLIFVNGR----IVITGAKSRSELHEAFDN 165 (176)
Q Consensus 139 t~~IF~sGk----ivitGaks~~~~~~a~~~ 165 (176)
++.+|..|+ ....|..+.+++.+.++.
T Consensus 84 t~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~ 114 (120)
T 1mek_A 84 TIKFFRNGDTASPKEYTAGREADDIVNWLKK 114 (120)
T ss_dssp EEEEEESSCSSSCEECCCCSSHHHHHHHHHT
T ss_pred EEEEEeCCCcCCcccccCccCHHHHHHHHHh
Confidence 455667787 456788888888776654
No 193
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=29.29 E-value=50 Score=23.84 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=34.3
Q ss_pred CCceEEEEEcCCeEEEEEec-CccEEEEccc--CHHHHHHHHHHHHHHHHhcCCC
Q psy2814 34 KFHGLIMKILNPRTTCLAFQ-SGKLLILGAK--HEHDCKLASRKFAKILKQLGHP 85 (176)
Q Consensus 34 ~fpgl~~R~~~p~~t~~If~-sGKivitGak--s~~~~~~a~~~i~~~L~~~g~~ 85 (176)
.|+--++-+.++.-.++.|+ +|.+-.-|++ +...+..|++.+++.++++|+.
T Consensus 24 s~NNTivtiTd~~G~~~~~~SaG~~gfKg~rk~tp~AA~~aa~~~~~~~~~~Gi~ 78 (129)
T 2vqe_K 24 SYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQ 78 (129)
T ss_dssp CSSCEEEEEECTTSCEEEECCTTTTTCCSGGGGSHHHHHHHHHHHHHHHHTTTCC
T ss_pred cCCCEEEEEEcCCCCEEEEEeccceeEcCCCcCCHHHHHHHHHHHHHHHHHhCCe
Confidence 34455566666654444444 4666555553 5677888999999999999864
No 194
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=29.17 E-value=61 Score=23.96 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=23.5
Q ss_pred ccceEEEEecCCHHHHHHHHHHHHHHHHhh
Q psy2814 144 VNGRIVITGAKSRSELHEAFDNIYPVLKSF 173 (176)
Q Consensus 144 ~sGkivitGaks~~~~~~a~~~i~~~L~~~ 173 (176)
-+|+..+.|+ +.+++.++++.+....++-
T Consensus 160 vng~~~~~~~-~~e~l~~~i~~ll~k~r~~ 188 (193)
T 3hz8_A 160 VGGKYKVEFA-DWESGMNTIDLLADKVREE 188 (193)
T ss_dssp ETTTEEECCS-SHHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEecCC-CHHHHHHHHHHHHHHHHHh
Confidence 3899999888 9999999998887665443
No 195
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=29.13 E-value=41 Score=25.02 Aligned_cols=30 Identities=23% Similarity=0.249 Sum_probs=22.8
Q ss_pred EEEEeccceE--EEEecCCHHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRI--VITGAKSRSELHEAFDNIYP 168 (176)
Q Consensus 139 t~~IF~sGki--vitGaks~~~~~~a~~~i~~ 168 (176)
|+.+|..|++ ...|..+.+++.+.++..++
T Consensus 171 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l~ 202 (210)
T 3apq_A 171 SLFIFRSGMAAVKYNGDRSKESLVAFAMQHVR 202 (210)
T ss_dssp EEEEECTTSCCEECCSCCCHHHHHHHHHHHHH
T ss_pred eEEEEECCCceeEecCCCCHHHHHHHHHHhCc
Confidence 5667788886 45688889999888877654
No 196
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=29.03 E-value=49 Score=22.29 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=25.4
Q ss_pred eEEEEEecCc----cEEEEcccCHHHHHHHHHHHHHHHHhc
Q psy2814 46 RTTCLAFQSG----KLLILGAKHEHDCKLASRKFAKILKQL 82 (176)
Q Consensus 46 ~~t~~If~sG----KivitGaks~~~~~~a~~~i~~~L~~~ 82 (176)
.+.+.|=.+| +|.|+|.+. .+..|.+.+..++++.
T Consensus 48 gv~I~i~~~g~~~~~V~I~G~~~--~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 48 GVHIHFPVEGSGSDTVVIRGPSS--DVEKAKKQLLHLAEEK 86 (95)
T ss_dssp SCEEECCCTTTTCCEEEEESCHH--HHHHHHHHHHHHHHHH
T ss_pred CCEEEeCCCCCCcceEEEEcCHH--HHHHHHHHHHHHHhhh
Confidence 3455555677 999999733 7888888888777654
No 197
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=28.91 E-value=1e+02 Score=19.43 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=24.2
Q ss_pred CCeEEEEEecCccEEEEcc-cCHHHHHHHH-HHHHHHH
Q psy2814 44 NPRTTCLAFQSGKLLILGA-KHEHDCKLAS-RKFAKIL 79 (176)
Q Consensus 44 ~p~~t~~If~sGKivitGa-ks~~~~~~a~-~~i~~~L 79 (176)
+|.-++.++-+|+...+|. +|..+|+..+ +..+..|
T Consensus 35 ~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L 72 (76)
T 3adj_A 35 VTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAI 72 (76)
T ss_dssp CEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 4566777888898877774 7888777544 4444444
No 198
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=28.76 E-value=54 Score=24.21 Aligned_cols=43 Identities=12% Similarity=0.020 Sum_probs=26.3
Q ss_pred eeEEEEcCCeEEEEEeccceEEEE--ecCCHHHHHHHHHHHHHHH
Q psy2814 128 GLIYRMVKPRVVLLIFVNGRIVIT--GAKSRSELHEAFDNIYPVL 170 (176)
Q Consensus 128 gl~~r~~~~~~t~~IF~sGkivit--Gaks~~~~~~a~~~i~~~L 170 (176)
|.-|.+.....+++|.+.|+|+-. |..+.+++.+.+..++..|
T Consensus 137 ~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l~~l 181 (200)
T 2b7k_A 137 GQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSY 181 (200)
T ss_dssp ----CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHC
T ss_pred CCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 333433344478999999999743 5556777777766665543
No 199
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=28.73 E-value=24 Score=25.09 Aligned_cols=51 Identities=20% Similarity=0.374 Sum_probs=34.4
Q ss_pred CceEEEEEcCCeEEEEEecC-ccEEEEccc--CHHHHHHHHHHHHHHHHhcCCC
Q psy2814 35 FHGLIMKILNPRTTCLAFQS-GKLLILGAK--HEHDCKLASRKFAKILKQLGHP 85 (176)
Q Consensus 35 fpgl~~R~~~p~~t~~If~s-GKivitGak--s~~~~~~a~~~i~~~L~~~g~~ 85 (176)
|+--++-+.++.-.++.|+| |.+-..|++ +...+..|++.+++.++++|+.
T Consensus 15 ~NNTivtiTD~~G~~i~~~S~G~~gfKg~rk~tp~AA~~aa~~~~~~~~~~Gi~ 68 (117)
T 3r8n_K 15 FNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIK 68 (117)
T ss_dssp SSCEEEEEECTTSCCSEEEETGGGSCCGGGGSSHHHHHHHHHHHHHHHTTSCCC
T ss_pred cCCEEEEEEcCCCCEEEEEcCCccccCCCccCCHHHHHHHHHHHHHHHHHhCCc
Confidence 45556666666555555544 666555553 5667888899999999999864
No 200
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Probab=28.58 E-value=1.2e+02 Score=21.17 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=30.7
Q ss_pred CeEEEEEecCccEEEEccc----CHHHHHHHHHHHHHHHHhcCC
Q psy2814 45 PRTTCLAFQSGKLLILGAK----HEHDCKLASRKFAKILKQLGH 84 (176)
Q Consensus 45 p~~t~~If~sGKivitGak----s~~~~~~a~~~i~~~L~~~g~ 84 (176)
.+.-+.+..+++.++.|.- ...++..++.++++.|.+.|+
T Consensus 82 ~~~Gv~i~kT~~aivI~~y~~~~~~g~~~~~ve~ladyL~~~gy 125 (125)
T 1acf_A 82 GSSGVITVKTSKAILVGVYNEKIQPGTAANVVEKLADYLIGQGF 125 (125)
T ss_dssp TTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCeEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3445677777777777653 356999999999999999875
No 201
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=28.54 E-value=67 Score=23.16 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=22.7
Q ss_pred ecCccEEEEcccCHHHHHHHHHHHHHHHH
Q psy2814 52 FQSGKLLILGAKHEHDCKLASRKFAKILK 80 (176)
Q Consensus 52 f~sGKivitGaks~~~~~~a~~~i~~~L~ 80 (176)
+-+|+.++.|+ +.++...+++.+...-+
T Consensus 160 ving~~~~~g~-~~~~l~~~i~~~~~~~~ 187 (193)
T 2rem_A 160 VVNGRYMVTGH-DFEDTLRITDYLVSRER 187 (193)
T ss_dssp EETTTEEECCS-SHHHHHHHHHHHHHHHH
T ss_pred EECCEEEecCC-CHHHHHHHHHHHHHHHH
Confidence 34899999999 99999999888776543
No 202
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=28.49 E-value=53 Score=23.82 Aligned_cols=30 Identities=7% Similarity=0.078 Sum_probs=24.0
Q ss_pred ecCccEEEEcccCHHHHHHHHHHHHHHHHh
Q psy2814 52 FQSGKLLILGAKHEHDCKLASRKFAKILKQ 81 (176)
Q Consensus 52 f~sGKivitGaks~~~~~~a~~~i~~~L~~ 81 (176)
+-+|+..+.|+.+.++....++.++...++
T Consensus 155 ving~~~~~g~~~~~~l~~~i~~~l~~~~~ 184 (195)
T 2znm_A 155 IVGGKYRVIFNNGFDGGVHTIKELVAKVRE 184 (195)
T ss_dssp EETTTEEECCCSHHHHHHHHHHHHHHHHHH
T ss_pred EECCEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 338998889988899988888888776554
No 203
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=28.18 E-value=82 Score=21.09 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=25.5
Q ss_pred eEEEEEecCc-------cEEEEcccCHHHHHHHHHHHHHHHHhc
Q psy2814 46 RTTCLAFQSG-------KLLILGAKHEHDCKLASRKFAKILKQL 82 (176)
Q Consensus 46 ~~t~~If~sG-------KivitGaks~~~~~~a~~~i~~~L~~~ 82 (176)
.|.+.|-.+| .|.|+|. .+.+..|.+.+..++++.
T Consensus 47 g~~I~i~~~g~~~~~~~~V~I~G~--~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 47 DVNIQFPDKDDGNQPQDQITITGY--EKNTEAARDAILRIVGEL 88 (97)
T ss_dssp TCEEECCCTTTCSSCSSEEEEESC--HHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCCccEEEEEeC--HHHHHHHHHHHHHHHHHH
Confidence 4566666777 7999996 677777777777776653
No 204
>3io0_A ETUB protein; tamdem repeat of bacterial microcompartment domain in A single polypeptide chain, structural protein; 3.00A {Clostridium kluyveri dsm 555}
Probab=28.05 E-value=73 Score=25.37 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=25.0
Q ss_pred cceEEEEecCCHHHHHHHHHHHHHHHHhh
Q psy2814 145 NGRIVITGAKSRSELHEAFDNIYPVLKSF 173 (176)
Q Consensus 145 sGkivitGaks~~~~~~a~~~i~~~L~~~ 173 (176)
+|+++|+|+-++++++.|++.....+.++
T Consensus 82 ~g~~ii~gg~dVs~V~sAve~~~~~~~~~ 110 (230)
T 3io0_A 82 HGIFIVLKAADVSDARRAVEIALKQTDKY 110 (230)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 48899999889999999999988887654
No 205
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=28.02 E-value=59 Score=22.14 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=21.9
Q ss_pred EEEe-ccceEE--EEecCCHHHHHHHHHHHHH
Q psy2814 140 LLIF-VNGRIV--ITGAKSRSELHEAFDNIYP 168 (176)
Q Consensus 140 ~~IF-~sGkiv--itGaks~~~~~~a~~~i~~ 168 (176)
+.++ ++|+++ ..|..+.+++.+.++.++.
T Consensus 110 ~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~ 141 (153)
T 2l5o_A 110 SVLIGKKGEILKTYVGEPDFGKLYQEIDTAWR 141 (153)
T ss_dssp EEEECSSSCCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3344 899985 7788889988888877654
No 206
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=27.86 E-value=23 Score=24.53 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=24.7
Q ss_pred eEEEEEecCccEE--EEcccCHHHHHHHHHHHHHHHHhcCC
Q psy2814 46 RTTCLAFQSGKLL--ILGAKHEHDCKLASRKFAKILKQLGH 84 (176)
Q Consensus 46 ~~t~~If~sGKiv--itGaks~~~~~~a~~~i~~~L~~~g~ 84 (176)
-.|+++|.+|+.+ +.|+.+...-....+.+...|.+.|.
T Consensus 74 ~PT~~~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~~g~ 114 (118)
T 3evi_A 74 LPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAEVGA 114 (118)
T ss_dssp CSEEEEEETTEEEEEEESTTTTTCSSCCHHHHHHHHHTTTS
T ss_pred CCEEEEEECCEEEEEEeChhhhCCCCCCHHHHHHHHHHcCC
Confidence 4589999999985 56876543223334455555666663
No 207
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=27.73 E-value=46 Score=22.91 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=19.7
Q ss_pred EEEEeccceEE--EEecC-------CHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAK-------SRSELHEAFDNI 166 (176)
Q Consensus 139 t~~IF~sGkiv--itGak-------s~~~~~~a~~~i 166 (176)
|+.+|.+|+++ +.|.. +.+++++.++..
T Consensus 83 t~~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~ 119 (135)
T 2dbc_A 83 TIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEV 119 (135)
T ss_dssp EEEEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence 67788899874 67876 567776666543
No 208
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=27.65 E-value=56 Score=20.49 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=22.7
Q ss_pred eEEEEEeccc----eEEEEecCCHHHHHHHHHHHHHH
Q psy2814 137 RVVLLIFVNG----RIVITGAKSRSELHEAFDNIYPV 169 (176)
Q Consensus 137 ~~t~~IF~sG----kivitGaks~~~~~~a~~~i~~~ 169 (176)
.+.+.|=..| .|+|+|. .+.++.|.+.|..+
T Consensus 35 g~~I~i~~~g~~~~~V~I~G~--~~~v~~A~~~I~~i 69 (71)
T 1vig_A 35 KVSVRIPPDSEKSNLIRIEGD--PQGVQQAKRELLEL 69 (71)
T ss_dssp CCEEECCCCCSSSEEEEEEES--SHHHHHHHHHHHHT
T ss_pred CCEEEECCCCCcccEEEEEcC--HHHHHHHHHHHHHH
Confidence 4455555666 9999998 36899998887654
No 209
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=27.44 E-value=1.1e+02 Score=21.14 Aligned_cols=32 Identities=9% Similarity=0.012 Sum_probs=25.0
Q ss_pred EEEEEecCccEEE--EcccCHHHHHHHHHHHHHH
Q psy2814 47 TTCLAFQSGKLLI--LGAKHEHDCKLASRKFAKI 78 (176)
Q Consensus 47 ~t~~If~sGKivi--tGaks~~~~~~a~~~i~~~ 78 (176)
.+++|..+|+|+- .|..+.+++...++++++.
T Consensus 132 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~ 165 (171)
T 2rli_A 132 AIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAA 165 (171)
T ss_dssp EEEEECTTSCEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred eEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 6888899999974 5777888888887776654
No 210
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=27.22 E-value=69 Score=24.75 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=23.1
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHHH
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRKF 75 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~i 75 (176)
.|+.+|.+|+++ .+|..+.+.+...++..
T Consensus 82 Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~ 112 (287)
T 3qou_A 82 PTVYLFQNGQPVDGFQGPQPEEAIRALLDXV 112 (287)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred CeEEEEECCEEEEEeeCCCCHHHHHHHHHHH
Confidence 388889999998 78999988877666543
No 211
>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A
Probab=27.16 E-value=1.4e+02 Score=21.09 Aligned_cols=39 Identities=13% Similarity=0.211 Sum_probs=29.9
Q ss_pred eEEEEEecCccEEEEccc----CHHHHHHHHHHHHHHHHhcCC
Q psy2814 46 RTTCLAFQSGKLLILGAK----HEHDCKLASRKFAKILKQLGH 84 (176)
Q Consensus 46 ~~t~~If~sGKivitGak----s~~~~~~a~~~i~~~L~~~g~ 84 (176)
+.-+.+..+++.++.|.- ...++..++.++++.|.+.||
T Consensus 88 ~~Gv~i~kT~~aivig~y~e~~~~g~~~~~ve~ladYL~~~GY 130 (130)
T 3nul_A 88 PGGVTIKKTNQALVFGFYDEPMTGGQCNLVVERLGDYLIESEL 130 (130)
T ss_dssp TEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 344667777777776653 356899999999999999885
No 212
>2pbd_P Profilin-1, profilin I; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens} SCOP: d.110.1.1 PDB: 1fik_A 1cjf_A 1pfl_A 1fil_A* 2pav_P* 3chw_P* 1awi_A 1cf0_A* 1pne_A 1hlu_P 2btf_P* 3u4l_P* 3ub5_P*
Probab=27.13 E-value=96 Score=22.29 Aligned_cols=36 Identities=17% Similarity=0.074 Sum_probs=27.6
Q ss_pred EEEecCccEEEEccc----CHHHHHHHHHHHHHHHHhcCC
Q psy2814 49 CLAFQSGKLLILGAK----HEHDCKLASRKFAKILKQLGH 84 (176)
Q Consensus 49 ~~If~sGKivitGak----s~~~~~~a~~~i~~~L~~~g~ 84 (176)
+.+..+++-++.|-- ...++..++.++++.|.+.|+
T Consensus 100 v~i~KT~~alvI~~y~e~~~~g~~~~~ve~ladYL~~~Gy 139 (139)
T 2pbd_P 100 VTVTKTDKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY 139 (139)
T ss_dssp EEEEECSSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEcCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 666666666666543 346999999999999999885
No 213
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=27.00 E-value=77 Score=22.68 Aligned_cols=33 Identities=6% Similarity=0.046 Sum_probs=26.4
Q ss_pred EEEEecCccEEEE--cccCHHHHHHHHHHHHHHHH
Q psy2814 48 TCLAFQSGKLLIL--GAKHEHDCKLASRKFAKILK 80 (176)
Q Consensus 48 t~~If~sGKivit--Gaks~~~~~~a~~~i~~~L~ 80 (176)
+++|..+|+|+-. |..+.+++...++++++.+.
T Consensus 139 ~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL~~~~ 173 (180)
T 3kij_A 139 KYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQVI 173 (180)
T ss_dssp EEEECTTSCEEEEECTTCCGGGTHHHHHHHHHHHH
T ss_pred EEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 8899999999754 77888888888777776554
No 214
>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A*
Probab=26.86 E-value=78 Score=25.33 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhcCCCccccee----------eeeeEEEEee
Q psy2814 68 CKLASRKFAKILKQLGHPIKYQGF----------KIHNIVCTCD 101 (176)
Q Consensus 68 ~~~a~~~i~~~L~~~g~~~~~~~~----------~i~nIvas~~ 101 (176)
-+++.+-|...|+++|+++...+| +.+||+|+.+
T Consensus 31 ~~~~~~~i~~~l~~~g~~v~~~~f~~~~~~~~~~~~~Nii~~~~ 74 (312)
T 4f9u_A 31 HQQVREYLVQSLNGLGFQTEVDEFKQRVPVFGELTFANVVGTIN 74 (312)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEEEETTTEEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeEEEecCCCCceeEEEEEEEEC
Confidence 356788899999999987765443 4579998875
No 215
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=26.82 E-value=39 Score=22.58 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=19.4
Q ss_pred CCCcccCCCCCceeEEEEcCCeEEEEEeccc
Q psy2814 116 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNG 146 (176)
Q Consensus 116 ~~~~~YePe~fpgl~~r~~~~~~t~~IF~sG 146 (176)
+..++|||.. .+.|++. ...+++|+||
T Consensus 63 gs~vthe~~~--fiyF~~g--~~~iLlfKtg 89 (89)
T 3rjs_A 63 GSYVTHETHH--FIYFYIG--QVAVLLFKSG 89 (89)
T ss_dssp CCCCCEEEEE--EEEEEET--TEEEEEEEEC
T ss_pred eEEEEEcCCc--EEEEEEC--CEEEEEEecC
Confidence 4567888763 4556653 4789999998
No 216
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=26.70 E-value=26 Score=24.41 Aligned_cols=35 Identities=20% Similarity=0.150 Sum_probs=24.7
Q ss_pred EEEEeccceEEE--EecCCHHHHHHHHHHHHHHHHhh
Q psy2814 139 VLLIFVNGRIVI--TGAKSRSELHEAFDNIYPVLKSF 173 (176)
Q Consensus 139 t~~IF~sGkivi--tGaks~~~~~~a~~~i~~~L~~~ 173 (176)
+++|-++|+++- .|..+.+++.+.++.+...+.+.
T Consensus 125 ~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~~~~~~ 161 (164)
T 2h30_A 125 WALIGKDGDVQRIVKGSINEAQALALIRNPNADLGSL 161 (164)
T ss_dssp EEEECTTSCEEEEEESCCCHHHHHHHHHCTTCCCGGG
T ss_pred EEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHHh
Confidence 444448999864 58889999998888766544433
No 217
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=26.54 E-value=69 Score=22.25 Aligned_cols=29 Identities=14% Similarity=0.348 Sum_probs=22.3
Q ss_pred EEEEeccceEEEEecC-CHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIVITGAK-SRSELHEAFDNIY 167 (176)
Q Consensus 139 t~~IF~sGkivitGak-s~~~~~~a~~~i~ 167 (176)
+++|=++|+++-.|.. +.+++++.++.+.
T Consensus 134 ~~lid~~G~i~~~g~~~~~~~l~~~l~~l~ 163 (165)
T 3ha9_A 134 IVIMDKSSNVLYAGTTPSLGELESVIKSVQ 163 (165)
T ss_dssp EEEEETTCCEEEEEESCCHHHHHHHHHHC-
T ss_pred EEEEcCCCcEEEeCCCCCHHHHHHHHHHHh
Confidence 3434489999999998 8999998887754
No 218
>3u27_C Microcompartments protein; structural genomics, PSI-biology, MCSG, alpha-beta-alpha FOL bacterial microcompartment, shell protein; 1.85A {Leptotrichia buccalis c-1013-b}
Probab=26.31 E-value=72 Score=25.22 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=26.2
Q ss_pred CccEE-EEcccCHHHHHHHHHHHHHHHHhc
Q psy2814 54 SGKLL-ILGAKHEHDCKLASRKFAKILKQL 82 (176)
Q Consensus 54 sGKiv-itGaks~~~~~~a~~~i~~~L~~~ 82 (176)
+||++ +.|..++.+.+.|++.....+++.
T Consensus 83 ~G~~i~iigG~dvs~V~~av~~~~~~~~~~ 112 (220)
T 3u27_C 83 AGEVIGILSGPTPAEVKSGLAAAVDFIENE 112 (220)
T ss_dssp TTTEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CccEEEEecCCCHHHHHHHHHHHHHHHHhh
Confidence 69998 999999999999999999998764
No 219
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=26.24 E-value=59 Score=23.42 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=20.3
Q ss_pred eccceEEEE--ecCCHHHHHHHHHHHH
Q psy2814 143 FVNGRIVIT--GAKSRSELHEAFDNIY 167 (176)
Q Consensus 143 F~sGkivit--Gaks~~~~~~a~~~i~ 167 (176)
+-+|+..+. |+.+.+++.++++.+.
T Consensus 167 ~ing~~~~~~~g~~~~~~l~~~i~~~l 193 (195)
T 3c7m_A 167 VVNGKYLIYTKSIKSIDAMADLIRELA 193 (195)
T ss_dssp EETTTEEECGGGCCCHHHHHHHHHHHH
T ss_pred EECCEEEeccCCCCCHHHHHHHHHHHH
Confidence 338998777 8889999999988764
No 220
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=26.13 E-value=97 Score=22.12 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=28.0
Q ss_pred EEEEEeccceEE--EEecCCHHHHHHHHHHHHHHHH
Q psy2814 138 VVLLIFVNGRIV--ITGAKSRSELHEAFDNIYPVLK 171 (176)
Q Consensus 138 ~t~~IF~sGkiv--itGaks~~~~~~a~~~i~~~L~ 171 (176)
.+++|-++|+|+ ..|..+.+++.+.++.++..+.
T Consensus 135 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~l~ 170 (176)
T 3kh7_A 135 ETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQQLL 170 (176)
T ss_dssp EEEEECTTCBEEEEEESCCCHHHHHHHTHHHHHHHH
T ss_pred eEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 578888999997 4488899999999888887665
No 221
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=26.08 E-value=59 Score=21.81 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=18.4
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFD 164 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~ 164 (176)
|+.+|..|+++ ..|..+.+++.+.++
T Consensus 99 t~~~~~~G~~~~~~~G~~~~~~l~~~l~ 126 (128)
T 3ul3_B 99 TIILLKNKTMLARKDHFVSSNDLIALIK 126 (128)
T ss_dssp EEEEEETTEEEEEESSCCCHHHHHHHHT
T ss_pred EEEEEECCEEEEEecCCCCHHHHHHHHH
Confidence 45566788866 458888888877654
No 222
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=25.91 E-value=53 Score=23.52 Aligned_cols=33 Identities=15% Similarity=0.274 Sum_probs=23.9
Q ss_pred EEEEe-ccceEE--EEec----------CCHHHHHHHHHHHHHHHH
Q psy2814 139 VLLIF-VNGRIV--ITGA----------KSRSELHEAFDNIYPVLK 171 (176)
Q Consensus 139 t~~IF-~sGkiv--itGa----------ks~~~~~~a~~~i~~~L~ 171 (176)
|+.+| ++|+++ +.|. .+.+++.+.++.++..+.
T Consensus 106 t~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 151 (164)
T 1sen_A 106 RILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLT 151 (164)
T ss_dssp EEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHHG
T ss_pred eEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHHhcc
Confidence 66778 789987 6785 577788887777665543
No 223
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=25.86 E-value=1.9e+02 Score=20.89 Aligned_cols=95 Identities=24% Similarity=0.378 Sum_probs=52.2
Q ss_pred EEEEcccCHHHHHHHHHHHHHHHH-hcCCCcccceeeeeeEEEE----eeeCc-ccCHHHHHHHcCCCcccCCCCCcee-
Q psy2814 57 LLILGAKHEHDCKLASRKFAKILK-QLGHPIKYQGFKIHNIVCT----CDVRF-PVKLDALHHVHSQFSSYEPELFPGL- 129 (176)
Q Consensus 57 ivitGaks~~~~~~a~~~i~~~L~-~~g~~~~~~~~~i~nIvas----~~l~~-~i~L~~l~~~~~~~~~YePe~fpgl- 129 (176)
|+|||. +|+.++-+.+=+..|+ ++++.+.. .|++| .++.| .=||+.+...+.+... ....|.|-
T Consensus 45 i~itgv--peqvrkelakeaerl~~efni~v~y------~imgsgsgvm~i~f~gddlea~ekalkemir-qarkfagtv 115 (170)
T 4hhu_A 45 IVITGV--PEQVRKELAKEAERLKAEFNINVQY------QIMGSGSGVMVIVFEGDDLEALEKALKEMIR-QARKFAGTV 115 (170)
T ss_dssp EEEESC--CHHHHHHHHHHHHHHHHHHTCEEEE------EEECTTCCEEEEEEECSCHHHHHHHHHHHHH-HHHHTTCEE
T ss_pred EEEeCC--cHHHHHHHHHHHHHHHHhcceEEEE------EEEeCCceEEEEEEecCcHHHHHHHHHHHHH-HHHhhcceE
Confidence 678887 5666666656555554 45544432 12222 22223 2368887654432221 22347664
Q ss_pred EEEEcCCeEEEEEeccceEEEEecCCHHHHHHHHHHHHHHH
Q psy2814 130 IYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVL 170 (176)
Q Consensus 130 ~~r~~~~~~t~~IF~sGkivitGaks~~~~~~a~~~i~~~L 170 (176)
.|-+++.... |+|||. +++++.-+.+=...|
T Consensus 116 tytl~gn~l~--------i~itgv--peqvrkelakeaerl 146 (170)
T 4hhu_A 116 TYTLSGNRLV--------IVITGV--PEQVRKELAKEAERL 146 (170)
T ss_dssp EEEECSSEEE--------EEEESC--CHHHHHHHHHHHHHH
T ss_pred EEEEeCCEEE--------EEEeCC--cHHHHHHHHHHHHHH
Confidence 5888887655 578988 566665554444433
No 224
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=25.77 E-value=88 Score=22.41 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=28.5
Q ss_pred eEEEEEecCc--------cEEEEcccCHHHHHHHHHHHHHHHHhc
Q psy2814 46 RTTCLAFQSG--------KLLILGAKHEHDCKLASRKFAKILKQL 82 (176)
Q Consensus 46 ~~t~~If~sG--------KivitGaks~~~~~~a~~~i~~~L~~~ 82 (176)
.+.+.|..+| .+.++| +.+.+..|.+.+..++++.
T Consensus 115 ga~I~i~~~~~~~~~~~~~v~I~G--~~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 115 AAEVVVPRDQTPDENDQVIVKIIG--HFYASQMAQRKIRDILAQV 157 (163)
T ss_dssp CCEEECCTTCCCCTTSEEEEEEEE--CHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCCCCCceEEEEEe--CHHHHHHHHHHHHHHHHHH
Confidence 4677787777 689999 6788999998888888765
No 225
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=25.44 E-value=92 Score=22.10 Aligned_cols=30 Identities=13% Similarity=0.018 Sum_probs=24.1
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHHHH
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRKFA 76 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~i~ 76 (176)
.+++|..+|+++ ..|..+.+++...+++++
T Consensus 149 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 180 (183)
T 3lwa_A 149 TTIVLDKQHRPAAVFLREVTSKDVLDVALPLV 180 (183)
T ss_dssp EEEEECTTSCEEEEECSCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 478888999996 568888888888877765
No 226
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=25.37 E-value=27 Score=27.91 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=28.2
Q ss_pred EEEEc-CCeEEEEEecCccEEEEcccCHHHHHHHHHHHHHHHHhcCCCcc
Q psy2814 39 IMKIL-NPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIK 87 (176)
Q Consensus 39 ~~R~~-~p~~t~~If~sGKivitGaks~~~~~~a~~~i~~~L~~~g~~~~ 87 (176)
.|++. .|+-.++|+.+.+.--.+-+.-..+..=++.+.+.|+++||+|.
T Consensus 12 ~Y~m~~~~rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF~V~ 61 (259)
T 3sir_A 12 EYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVT 61 (259)
T ss_dssp BCCCCSSEEEEEEEEEECCC-----------CCHHHHHHHHHHHTTCEEE
T ss_pred cCCCCCCCccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE
Confidence 35554 56788999999988654333333444445678888899998654
No 227
>4fay_A Microcompartments protein; BMC domain, shell protein, glycerol-binding protein; 1.56A {Lactobacillus reuteri}
Probab=25.36 E-value=87 Score=25.37 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=24.3
Q ss_pred cceEEEEecCCHHHHHHHHHHHHHHHHhh
Q psy2814 145 NGRIVITGAKSRSELHEAFDNIYPVLKSF 173 (176)
Q Consensus 145 sGkivitGaks~~~~~~a~~~i~~~L~~~ 173 (176)
.|+++|+|+-++.+++.|++.-...+.++
T Consensus 110 ~g~~ii~gg~dVs~V~saVeaa~~~~~~~ 138 (258)
T 4fay_A 110 HGCLIIIGGDDPADARQAIRVALDNLHRT 138 (258)
T ss_dssp BCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCHHHHHHHHHHHHHHHhhh
Confidence 49999999999999999988877766553
No 228
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=25.17 E-value=81 Score=21.44 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=27.1
Q ss_pred eEEEEEecCc----cEEEEcccCHHHHHHHHHHHHHHHHhc
Q psy2814 46 RTTCLAFQSG----KLLILGAKHEHDCKLASRKFAKILKQL 82 (176)
Q Consensus 46 ~~t~~If~sG----KivitGaks~~~~~~a~~~i~~~L~~~ 82 (176)
.|.+.|-..| .|.|+|.. +.+..|.+.+..++++.
T Consensus 47 g~~I~I~~~g~~~~~V~I~G~~--e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 47 EVNIHVPAPELQSDIIAITGLA--ANLDRAKAGLLERVKEL 85 (104)
T ss_dssp CCEEECCCTTTTCCEEEEEECH--HHHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCcceEEEEcCH--HHHHHHHHHHHHHHhhH
Confidence 4666666777 99999973 78888888888887764
No 229
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=24.96 E-value=31 Score=25.26 Aligned_cols=49 Identities=8% Similarity=0.196 Sum_probs=35.1
Q ss_pred EEEc-CCeEEEEEecCccEEEE-cccCHHHHHHHHHHHHHHHHhcCCCccc
Q psy2814 40 MKIL-NPRTTCLAFQSGKLLIL-GAKHEHDCKLASRKFAKILKQLGHPIKY 88 (176)
Q Consensus 40 ~R~~-~p~~t~~If~sGKivit-Gaks~~~~~~a~~~i~~~L~~~g~~~~~ 88 (176)
|++. .|+..++|+.+.+.--. +-+.-..+..-++.+.+.++++||+|..
T Consensus 9 Y~m~~~~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~ 59 (146)
T 2dko_A 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRN 59 (146)
T ss_dssp CCCCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCCCceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 4443 57889999999876421 3344556677778899999999998664
No 230
>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD, hydrolase; HET: MSE; 1.75A {Escherichia coli} SCOP: d.14.1.10 PDB: 1rr9_A*
Probab=24.91 E-value=96 Score=23.69 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=26.9
Q ss_pred cCccEEEEcccCHHHHHHHHHHHHHHHH----hcCCCcc
Q psy2814 53 QSGKLLILGAKHEHDCKLASRKFAKILK----QLGHPIK 87 (176)
Q Consensus 53 ~sGKivitGaks~~~~~~a~~~i~~~L~----~~g~~~~ 87 (176)
..|++.+||- --+..+++.++....++ ++|++.+
T Consensus 36 G~g~~~itG~-~~~~~kES~~~a~s~~~~~~~~~g~~~~ 73 (200)
T 1rre_A 36 GKGKLTYTGS-LGEVMQESIQAALTVVRARAEKLGINPD 73 (200)
T ss_dssp CSSCEEEESS-BCHHHHHHHHHHHHHHHHTHHHHTCCTT
T ss_pred CCceEEEecC-chHHHHHHHHHHHHHHHHhHHhcCCCcc
Confidence 5788999996 44668888888888887 7888855
No 231
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=24.90 E-value=84 Score=23.52 Aligned_cols=107 Identities=16% Similarity=0.147 Sum_probs=52.6
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHHHHHHHHhcCCCcccceeeeeeEEEEeeeCcccCHHHHHHHcCCCcccCCC
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPE 124 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~i~~~L~~~g~~~~~~~~~i~nIvas~~l~~~i~L~~l~~~~~~~~~YePe 124 (176)
.|+.+|.+|+++ ..|..+.+++...++++. ... .....-....|++..-++.-.++ +.|.... ..|-.
T Consensus 86 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l---~~~--~~~s~v~~l~n~v~~~e~~~e~~-~dl~~e~---~~~G~- 155 (222)
T 3dxb_A 86 PTLLLFKNGEVAATKVGALSKGQLKEFLDANL---AGS--AMESTVMVLRNMVDPKDIDDDLE-GEVTEEC---GKFGA- 155 (222)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHHHS---CCS--CCBCSEEEEESSCCGGGCCTTHH-HHHHHHH---TTTSC-
T ss_pred CEEEEEECCeEEEEeccccChHHHHHHHHhhc---ccc--ccccccchhhcCCCHHHHHHHHH-HHHHHHH---HccCC-
Confidence 377888999985 789988888877755543 111 11122344555554444333222 1122221 22221
Q ss_pred CCceeEEEEcCCe-EEEEEeccceEEEEecCCHHHHHHHHHHH
Q psy2814 125 LFPGLIYRMVKPR-VVLLIFVNGRIVITGAKSRSELHEAFDNI 166 (176)
Q Consensus 125 ~fpgl~~r~~~~~-~t~~IF~sGkivitGaks~~~~~~a~~~i 166 (176)
.-.-.+.+-..+. -+ --+-|++.|.=. +.+++..|++.+
T Consensus 156 v~~~~v~~~~~~~~~~--~~~~G~~fv~f~-~~~~a~~a~~~l 195 (222)
T 3dxb_A 156 VNRVIIYQEKQGEEED--AEIIVKIFVEFS-IASETHKAIQAL 195 (222)
T ss_dssp EEEEEEEEEECCSSTT--CCEEEEEEEEES-SHHHHHHHHHHH
T ss_pred eEEEEEecCCCCcccC--cCceeEEEEEEC-CHHHHHHHHHHh
Confidence 0011112211110 00 011277777744 899999998875
No 232
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=24.84 E-value=1.3e+02 Score=18.70 Aligned_cols=36 Identities=6% Similarity=-0.095 Sum_probs=24.7
Q ss_pred CCeEEEEEecCccEEEEcc--cCHHHHHHHH-HHHHHHH
Q psy2814 44 NPRTTCLAFQSGKLLILGA--KHEHDCKLAS-RKFAKIL 79 (176)
Q Consensus 44 ~p~~t~~If~sGKivitGa--ks~~~~~~a~-~~i~~~L 79 (176)
+|.-++.++-+|+...+|. +|..+|+..+ +..+..|
T Consensus 33 ~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L 71 (73)
T 3adg_A 33 KSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALREL 71 (73)
T ss_dssp SCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHh
Confidence 5677888888998887774 5787777544 4444444
No 233
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.80 E-value=52 Score=21.84 Aligned_cols=28 Identities=7% Similarity=0.266 Sum_probs=18.6
Q ss_pred EEEEeccceE-EEEecCCHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRI-VITGAKSRSELHEAFDNI 166 (176)
Q Consensus 139 t~~IF~sGki-vitGaks~~~~~~a~~~i 166 (176)
|+.+|.+|++ ...|..+.+++.+.++..
T Consensus 80 t~~~~~~G~~~~~~G~~~~~~l~~~l~~~ 108 (126)
T 1x5e_A 80 TIYHCKDGEFRRYQGPRTKKDFINFISDK 108 (126)
T ss_dssp EEEEEETTEEEECCSCCCHHHHHHHHHTC
T ss_pred EEEEEeCCeEEEeecCCCHHHHHHHHHHH
Confidence 3445577774 246888888888776654
No 234
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=24.79 E-value=69 Score=21.34 Aligned_cols=27 Identities=7% Similarity=0.017 Sum_probs=18.7
Q ss_pred EEEEeccce----EEEEecCCHHHHHHHHHH
Q psy2814 139 VLLIFVNGR----IVITGAKSRSELHEAFDN 165 (176)
Q Consensus 139 t~~IF~sGk----ivitGaks~~~~~~a~~~ 165 (176)
|+.+|..|+ +...|.++.+++.+-+++
T Consensus 95 t~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~ 125 (127)
T 3h79_A 95 TMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQ 125 (127)
T ss_dssp EEEEECSSCSSSCEECCSCCCHHHHHHHHHH
T ss_pred EEEEEeCCCCCCceEecCCccHHHHHHHHHh
Confidence 345565553 467799999988877654
No 235
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=24.43 E-value=1.8e+02 Score=20.09 Aligned_cols=41 Identities=10% Similarity=0.064 Sum_probs=27.1
Q ss_pred CCeEEEEEec-----CccEEEEc-ccCHHHHH-HHHHHHHHHHHhcCC
Q psy2814 44 NPRTTCLAFQ-----SGKLLILG-AKHEHDCK-LASRKFAKILKQLGH 84 (176)
Q Consensus 44 ~p~~t~~If~-----sGKivitG-aks~~~~~-~a~~~i~~~L~~~g~ 84 (176)
+|.-++.++- +|++..+| ++|..+|+ .|++..+..|.+.|+
T Consensus 55 ~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~~~ 102 (113)
T 1uil_A 55 NRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGV 102 (113)
T ss_dssp TCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4556666666 58887777 35777666 456666777777664
No 236
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=24.36 E-value=1.1e+02 Score=20.79 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=22.4
Q ss_pred EEEEEeccceEE--EEecCCHHHHHHHHHHH
Q psy2814 138 VVLLIFVNGRIV--ITGAKSRSELHEAFDNI 166 (176)
Q Consensus 138 ~t~~IF~sGkiv--itGaks~~~~~~a~~~i 166 (176)
.+++|-++|+++ ..|..+.+++++.+++.
T Consensus 112 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 142 (154)
T 3ia1_A 112 WTFVVDREGKVVALFAGRAGREALLDALLLA 142 (154)
T ss_dssp EEEEECTTSEEEEEEESBCCHHHHHHHHHHT
T ss_pred EEEEECCCCCEEEEEcCCCCHHHHHHHHHhc
Confidence 457777999976 67788888888887654
No 237
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=24.13 E-value=48 Score=19.79 Aligned_cols=18 Identities=28% Similarity=0.565 Sum_probs=14.1
Q ss_pred cceEEEEecC-CHHHHHHH
Q psy2814 145 NGRIVITGAK-SRSELHEA 162 (176)
Q Consensus 145 sGkivitGak-s~~~~~~a 162 (176)
+|+++..|.. +.+++.+.
T Consensus 57 ~G~~~~~G~~~~~~~l~~~ 75 (77)
T 1ilo_A 57 DGELKIMGRVASKEEIKKI 75 (77)
T ss_dssp TTEEEECSSCCCHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHH
Confidence 7888777887 88887764
No 238
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=23.98 E-value=29 Score=27.96 Aligned_cols=49 Identities=20% Similarity=0.332 Sum_probs=34.9
Q ss_pred EEEEc-CCeEEEEEecCccEEEEcccCHHHHHHHHHHHHHHHHhcCCCcc
Q psy2814 39 IMKIL-NPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIK 87 (176)
Q Consensus 39 ~~R~~-~p~~t~~If~sGKivitGaks~~~~~~a~~~i~~~L~~~g~~~~ 87 (176)
.|++. .|+..++|+.+.+.--.+.+....+..=++.+.+.|+++||+|.
T Consensus 24 ~Y~m~~~~rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~ 73 (272)
T 1m72_A 24 YYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT 73 (272)
T ss_dssp BCCCCSSEEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE
T ss_pred cccCCCCCCCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE
Confidence 45654 46788999999877532444556667777888899999998553
No 239
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=23.97 E-value=59 Score=20.84 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=20.6
Q ss_pred cceEEEEecCCHHHHHHHHHHHHHHHHh
Q psy2814 145 NGRIVITGAKSRSELHEAFDNIYPVLKS 172 (176)
Q Consensus 145 sGkivitGaks~~~~~~a~~~i~~~L~~ 172 (176)
.+.|.|+|. .+.++.|...|..++.+
T Consensus 50 ~r~v~I~G~--~~~v~~A~~~I~~~i~~ 75 (82)
T 1wvn_A 50 GRQVTITGS--AASISLAQYLINARLSS 75 (82)
T ss_dssp EEEEEEEEC--HHHHHHHHHHHHHHTC-
T ss_pred ceEEEEEcC--HHHHHHHHHHHHHHHHh
Confidence 458889986 58999999999887754
No 240
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=23.94 E-value=59 Score=19.33 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=17.5
Q ss_pred eccceEEEEecCCHHHHHHHHHH
Q psy2814 143 FVNGRIVITGAKSRSELHEAFDN 165 (176)
Q Consensus 143 F~sGkivitGaks~~~~~~a~~~ 165 (176)
|.+|++.+++.-+++++.++++.
T Consensus 35 ~~~~~~~v~~~~~~~~i~~~i~~ 57 (68)
T 3iwl_A 35 LPNKKVCIESEHSMDTLLATLKK 57 (68)
T ss_dssp TTTTEEEEEESSCHHHHHHHHHT
T ss_pred cCCCEEEEEecCCHHHHHHHHHH
Confidence 56778888887788888877754
No 241
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=23.55 E-value=87 Score=23.21 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=61.7
Q ss_pred EEEEEecCcc--EEEEcccCHHHHHHHHHHHHHHHHhcCCCccc----------ceeeeeeEEEEeeeCcc---cCHHHH
Q psy2814 47 TTCLAFQSGK--LLILGAKHEHDCKLASRKFAKILKQLGHPIKY----------QGFKIHNIVCTCDVRFP---VKLDAL 111 (176)
Q Consensus 47 ~t~~If~sGK--ivitGaks~~~~~~a~~~i~~~L~~~g~~~~~----------~~~~i~nIvas~~l~~~---i~L~~l 111 (176)
.|+.+|..|+ +...|.++.+++...+..+...-.. ...... ....+.+..++-+-+|+ -.++++
T Consensus 83 Ptl~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~ 161 (229)
T 2ywm_A 83 PTIVIEGDKDYGIRYIGLPAGLEFTTLINGIFHVSQR-KPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDF 161 (229)
T ss_dssp SEEEEESSSCCCEEEESCCCTTHHHHHHHHHHHHHTT-CCSCCHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHH
T ss_pred cEEEEECCCcccceecCCccHHHHHHHHHHHHhccCC-ccCCCHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHH
Confidence 3677777654 5578999988887766555432111 111111 11223344443332221 124444
Q ss_pred HHHcC--CCcccCCCCCceeE--EEEc-CCeEEEEEeccceEE-EEecCCHHHHHHHHHHHHHHHHhhhc
Q psy2814 112 HHVHS--QFSSYEPELFPGLI--YRMV-KPRVVLLIFVNGRIV-ITGAKSRSELHEAFDNIYPVLKSFKK 175 (176)
Q Consensus 112 ~~~~~--~~~~YePe~fpgl~--~r~~-~~~~t~~IF~sGkiv-itGaks~~~~~~a~~~i~~~L~~~r~ 175 (176)
+..++ .....+-+.++.+. |.+. -| |+.+ +|++. ..|..+.+++.+.++.....+.+-++
T Consensus 162 ~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P--t~~~--~G~~~~~~G~~~~~~l~~~l~~~~~~~~~~~~ 227 (229)
T 2ywm_A 162 ALANDYITSKVIDASENQDLAEQFQVVGVP--KIVI--NKGVAEFVGAQPENAFLGYIMAVYEKLKREKE 227 (229)
T ss_dssp HHHCTTEEEEEEEGGGCHHHHHHTTCCSSS--EEEE--GGGTEEEESCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCeEEEEEECCCCHHHHHHcCCcccC--EEEE--CCEEEEeeCCCCHHHHHHHHHHHhhhhhhhhc
Confidence 44331 00111111122111 1111 13 3333 89965 89999999999998888776655433
No 242
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=23.40 E-value=29 Score=28.68 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=34.9
Q ss_pred EEEEc-C-CeEEEEEecCccEEEEcccCHHHHHHHHHHHHHHHHhcCCCcc
Q psy2814 39 IMKIL-N-PRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIK 87 (176)
Q Consensus 39 ~~R~~-~-p~~t~~If~sGKivitGaks~~~~~~a~~~i~~~L~~~g~~~~ 87 (176)
.|++. . |+..++|+.+.+.--++ +....+..=++.+.+.|+++||+|.
T Consensus 52 ~Y~m~~~~~rg~aLIInN~~F~~~~-~~R~Gt~~D~~~L~~~f~~LGF~V~ 101 (316)
T 2fp3_A 52 TYKMQSRFNRGVLLMVNIMDYPDQN-RRRIGAEKDSKSLIHLFQELNFTIF 101 (316)
T ss_dssp BCCCCCSSCSEEEEEEECCCCSSTT-SCCTTHHHHHHHHHHHHHHTTEEEE
T ss_pred cccCCCCCCCcEEEEEeCcccCCCC-CCCCCcHHHHHHHHHHHHHCCCEEE
Confidence 46664 3 78999999999876434 5666667777788888888887543
No 243
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=23.37 E-value=1.3e+02 Score=21.49 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=22.2
Q ss_pred cceEEEEecCCHHHHHHHHHHHHHHHHh
Q psy2814 145 NGRIVITGAKSRSELHEAFDNIYPVLKS 172 (176)
Q Consensus 145 sGkivitGaks~~~~~~a~~~i~~~L~~ 172 (176)
.|.|.|+|. +.+.++.|.+.|..+|.+
T Consensus 73 ~lhV~I~a~-~~e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 73 PLHALVTAN-TMENVKKAVEQIRNILKQ 99 (131)
T ss_dssp CEEEEEEES-SHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEEEC-CHHHHHHHHHHHHHHHhc
Confidence 467777765 789999999999999864
No 244
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=23.29 E-value=1.1e+02 Score=20.25 Aligned_cols=29 Identities=14% Similarity=0.358 Sum_probs=21.9
Q ss_pred EEEEe-ccceEEE--EecCCHHHHHHHHHHHH
Q psy2814 139 VLLIF-VNGRIVI--TGAKSRSELHEAFDNIY 167 (176)
Q Consensus 139 t~~IF-~sGkivi--tGaks~~~~~~a~~~i~ 167 (176)
++.++ ++|+++- .|..+.+++.+.++.++
T Consensus 113 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l 144 (148)
T 2b5x_A 113 AYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVL 144 (148)
T ss_dssp EEEEECTTCBEEEEEESCSTTHHHHHHHHHHH
T ss_pred EEEEECCCCcEEEEecCCCCHHHHHHHHHHHH
Confidence 45566 8999865 57788888888887764
No 245
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=23.25 E-value=67 Score=23.61 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=20.4
Q ss_pred cCccEEE--EcccCHHHHHHHHHHHH
Q psy2814 53 QSGKLLI--LGAKHEHDCKLASRKFA 76 (176)
Q Consensus 53 ~sGKivi--tGaks~~~~~~a~~~i~ 76 (176)
-+||..+ .|+.+.++...+++.++
T Consensus 158 vng~~~v~~~Ga~~~e~~~~~i~~ll 183 (185)
T 3feu_A 158 VNGKYNVLIGGHDDPKQIADTIRYLL 183 (185)
T ss_dssp ETTTEEECGGGCSSHHHHHHHHHHHH
T ss_pred ECCEEEEecCCCCCHHHHHHHHHHHH
Confidence 3999988 89999999988877664
No 246
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=23.22 E-value=15 Score=27.99 Aligned_cols=60 Identities=8% Similarity=0.140 Sum_probs=37.1
Q ss_pred EEccCCCceEEEEEc-CCeEEEEEecCccEEE-EcccCHHHHHHHHHHHHHHHHhcCCCccc
Q psy2814 29 EYNPGKFHGLIMKIL-NPRTTCLAFQSGKLLI-LGAKHEHDCKLASRKFAKILKQLGHPIKY 88 (176)
Q Consensus 29 ~Y~P~~fpgl~~R~~-~p~~t~~If~sGKivi-tGaks~~~~~~a~~~i~~~L~~~g~~~~~ 88 (176)
...+..-|.-.|++. .|+..++|+.+.+.-- +|-+.-..+..-++.+.+.++++||+|..
T Consensus 26 ~~~~~~~p~~~Y~m~~~~rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~V~v 87 (173)
T 2ql9_A 26 KTTRDRVPTYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIV 87 (173)
T ss_dssp --------CCBCCCCSSEEEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEEEEE
T ss_pred ccccCCCcccccccCCCCceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEE
Confidence 333344445556665 5788999999987642 13334456677778899999999998653
No 247
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=23.16 E-value=39 Score=23.06 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=19.0
Q ss_pred CCcccCCCCCceeEEEEcCCeEEEEEeccc
Q psy2814 117 QFSSYEPELFPGLIYRMVKPRVVLLIFVNG 146 (176)
Q Consensus 117 ~~~~YePe~fpgl~~r~~~~~~t~~IF~sG 146 (176)
..++|||.. .+.|++ ....+++|+||
T Consensus 72 s~vThe~~~--fiyF~~--g~~aiLlfKtg 97 (97)
T 4ds1_A 72 SYVTHEKGH--FVYFYI--GPLAFLVFKTA 97 (97)
T ss_dssp EEEEECTTE--EEEEEE--TTEEEEEEECC
T ss_pred EEEEEcCCc--EEEEEE--CCEEEEEEecC
Confidence 457788774 566776 35789999998
No 248
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=23.11 E-value=1.9e+02 Score=22.50 Aligned_cols=42 Identities=19% Similarity=0.148 Sum_probs=28.1
Q ss_pred EEEcCCeEEEEEecCccEEEEc-ccCHHHHHH-HHHHHHHHHHh
Q psy2814 40 MKILNPRTTCLAFQSGKLLILG-AKHEHDCKL-ASRKFAKILKQ 81 (176)
Q Consensus 40 ~R~~~p~~t~~If~sGKivitG-aks~~~~~~-a~~~i~~~L~~ 81 (176)
.+..+|.-++.++-.|+...+| ++|..+|++ |++..+..|++
T Consensus 220 ~~~~~~~f~v~v~v~~~~~~~G~G~SkK~Aeq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 220 ERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKA 263 (265)
T ss_dssp EECTTSCEEEEEEETTTEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEEEecceEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 3456777888899999887766 457776664 55555555553
No 249
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=22.98 E-value=37 Score=24.63 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=28.8
Q ss_pred EEEEec-cceEE--EEec-------CCHHHHHHHHHHHHHHHHhhhc
Q psy2814 139 VLLIFV-NGRIV--ITGA-------KSRSELHEAFDNIYPVLKSFKK 175 (176)
Q Consensus 139 t~~IF~-sGkiv--itGa-------ks~~~~~~a~~~i~~~L~~~r~ 175 (176)
|+.+|. .|+++ ++|+ -+.+++.+.++.+...|++++.
T Consensus 103 T~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~~~~~ 149 (151)
T 3ph9_A 103 RIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALRLIQS 149 (151)
T ss_dssp EEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHSCCC-
T ss_pred EEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHHHHhc
Confidence 677776 89886 5798 6668889999999888887753
No 250
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=22.97 E-value=87 Score=20.27 Aligned_cols=28 Identities=11% Similarity=0.329 Sum_probs=20.4
Q ss_pred EEEEe-ccceEE--EEecCCHHHHHHHHHHH
Q psy2814 139 VLLIF-VNGRIV--ITGAKSRSELHEAFDNI 166 (176)
Q Consensus 139 t~~IF-~sGkiv--itGaks~~~~~~a~~~i 166 (176)
++.++ ++|+++ ..|..+.+++.+.++.+
T Consensus 107 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 137 (138)
T 4evm_A 107 TQAFIDKEGKLVKTHPGFMEKDAILQTLKEL 137 (138)
T ss_dssp EEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred eEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence 44455 899985 57888888888877653
No 251
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=22.78 E-value=1.1e+02 Score=21.21 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=18.6
Q ss_pred EEEEeccceEE--EEecCCHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIV--ITGAKSRSELHEAFDNIY 167 (176)
Q Consensus 139 t~~IF~sGkiv--itGaks~~~~~~a~~~i~ 167 (176)
|+.+|.+|+++ ..|. +.+++.+.+++++
T Consensus 88 t~~~~~~G~~~~~~~G~-~~~~l~~~i~~~l 117 (153)
T 2wz9_A 88 TFLFFKNSQKIDRLDGA-HAPELTKKVQRHA 117 (153)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHHS
T ss_pred EEEEEECCEEEEEEeCC-CHHHHHHHHHHHh
Confidence 45567778775 5675 6777777766554
No 252
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=22.71 E-value=1.7e+02 Score=19.33 Aligned_cols=38 Identities=21% Similarity=0.111 Sum_probs=28.9
Q ss_pred EEEEeccceEEEEecCCHHHHHHHHHHHHHHHHhhhcC
Q psy2814 139 VLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176 (176)
Q Consensus 139 t~~IF~sGkivitGaks~~~~~~a~~~i~~~L~~~r~~ 176 (176)
.+.|...++.....|.++++.++=++.|...+.+.++|
T Consensus 80 ~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~~~ 117 (126)
T 1fao_A 80 CFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQIRKQ 117 (126)
T ss_dssp EEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHTC---
T ss_pred EEEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHHHHhc
Confidence 45666678888888999999998888888888776654
No 253
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=22.66 E-value=98 Score=22.75 Aligned_cols=28 Identities=14% Similarity=0.004 Sum_probs=23.2
Q ss_pred cCccEEEEcccCHHHHHHHHHHHHHHHHh
Q psy2814 53 QSGKLLILGAKHEHDCKLASRKFAKILKQ 81 (176)
Q Consensus 53 ~sGKivitGaks~~~~~~a~~~i~~~L~~ 81 (176)
-+|+....|+ +.++...+++.++...++
T Consensus 160 vng~~~~~~~-~~e~l~~~i~~ll~k~r~ 187 (193)
T 3hz8_A 160 VGGKYKVEFA-DWESGMNTIDLLADKVRE 187 (193)
T ss_dssp ETTTEEECCS-SHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEecCC-CHHHHHHHHHHHHHHHHH
Confidence 3999999888 999999998888776543
No 254
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.65 E-value=1.8e+02 Score=20.42 Aligned_cols=30 Identities=17% Similarity=0.029 Sum_probs=23.9
Q ss_pred ccceEEEEecCCHHHHHHHHHHHHHHHHhhh
Q psy2814 144 VNGRIVITGAKSRSELHEAFDNIYPVLKSFK 174 (176)
Q Consensus 144 ~sGkivitGaks~~~~~~a~~~i~~~L~~~r 174 (176)
..|.|.|++. +.+.+++|.+.|-.+|...+
T Consensus 72 e~l~V~I~a~-~~e~i~~A~~~Ie~Ll~~v~ 101 (119)
T 2yqr_A 72 EPMYIYISHP-KPEGLAAAKKLCENLLQTVH 101 (119)
T ss_dssp SBCEEEEEES-SHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeC-CHHHHHHHHHHHHHHhhchH
Confidence 3477888875 89999999999988887543
No 255
>3tqm_A Ribosome-associated factor Y; protein synthesis, protein binding; 2.45A {Coxiella burnetii}
Probab=22.56 E-value=94 Score=20.56 Aligned_cols=35 Identities=11% Similarity=0.001 Sum_probs=24.2
Q ss_pred eEEEEEecCccEEEEcccCHHHHHHHHHHHHHHHHh
Q psy2814 46 RTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQ 81 (176)
Q Consensus 46 ~~t~~If~sGKivitGaks~~~~~~a~~~i~~~L~~ 81 (176)
+|.+.+.-.|. .+.+..+-++...|++.....|++
T Consensus 49 ~~ei~i~~~g~-~l~a~~~~~d~y~Aid~a~dkler 83 (96)
T 3tqm_A 49 IVDANVKLPGS-TINAQAESDDMYKTVDLLMHKLET 83 (96)
T ss_dssp EEEEEEEETTE-EEEEEECCSCHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCc-EEEEEEecCCHHHHHHHHHHHHHH
Confidence 57778888888 566666777777776666666543
No 256
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=22.55 E-value=1.4e+02 Score=20.34 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=23.4
Q ss_pred EEEEEeccceEE--EEecCCHHHHHHHHHHHH
Q psy2814 138 VVLLIFVNGRIV--ITGAKSRSELHEAFDNIY 167 (176)
Q Consensus 138 ~t~~IF~sGkiv--itGaks~~~~~~a~~~i~ 167 (176)
.+++|=+.|+++ ..|..+.+++.+.++.++
T Consensus 120 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 151 (158)
T 3eyt_A 120 SLLLIDKAGDLRAHHFGDVSELLLGAEIATLL 151 (158)
T ss_dssp EEEEECTTSEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEEeCCCCHHHHHHHHHHHh
Confidence 466666899985 458889999988888765
No 257
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=22.49 E-value=1.1e+02 Score=22.49 Aligned_cols=29 Identities=14% Similarity=-0.099 Sum_probs=22.1
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHHH
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRKF 75 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~i 75 (176)
.|+.+|.+|+.+ ..|..+.+++...+++.
T Consensus 194 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 224 (226)
T 1a8l_A 194 PKIVIQVNGEDRVEFEGAYPEKMFLEKLLSA 224 (226)
T ss_dssp CEEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred CeEEEEeCCceeEEEcCCCCHHHHHHHHHHh
Confidence 367888999865 67999988877776554
No 258
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A
Probab=22.41 E-value=48 Score=23.54 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=27.9
Q ss_pred EEecCccEEEEcccCHHHHHHHHHHHHHHHHhcCCCcc
Q psy2814 50 LAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIK 87 (176)
Q Consensus 50 ~If~sGKivitGaks~~~~~~a~~~i~~~L~~~g~~~~ 87 (176)
++|-||-+-+.+..=.++++.+++++...|+..|....
T Consensus 29 ~lfvSGq~~~d~~d~~~Q~~~~l~nl~~~L~~aG~~l~ 66 (128)
T 3kjj_A 29 LIFLSGMVPENGETAAEQTADVLAQIDRWLAECGSDKA 66 (128)
T ss_dssp EEEECCBCCSSCSSHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred EEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 56667655443334568899999999999999987544
No 259
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=22.04 E-value=1.2e+02 Score=22.74 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=24.2
Q ss_pred EEEEeccceEEEEecCCHHHHHHHHHHHHHHHH
Q psy2814 139 VLLIFVNGRIVITGAKSRSELHEAFDNIYPVLK 171 (176)
Q Consensus 139 t~~IF~sGkivitGaks~~~~~~a~~~i~~~L~ 171 (176)
|+ +|.+|+ .+.|+.+.+++.+.++.....++
T Consensus 184 t~-v~~dG~-~~~G~~~~~~l~~~l~~~~~~~~ 214 (216)
T 1eej_A 184 AV-VLSNGT-LVPGYQPPKEMKEFLDEHQKMTS 214 (216)
T ss_dssp EE-ECTTSC-EEESCCCHHHHHHHHHHHHHHHH
T ss_pred EE-EEcCCe-EecCCCCHHHHHHHHHHhhhhcc
Confidence 44 677887 56899999999999988766543
No 260
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=21.84 E-value=2e+02 Score=19.65 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=29.0
Q ss_pred cEEEEcccCHHHHHHHHHHHHHHHHh-cCCCcccceeeeee
Q psy2814 56 KLLILGAKHEHDCKLASRKFAKILKQ-LGHPIKYQGFKIHN 95 (176)
Q Consensus 56 KivitGaks~~~~~~a~~~i~~~L~~-~g~~~~~~~~~i~n 95 (176)
.|.+.|.+|.|+-+.-++.+.+.|.+ +|.+...-.+.++.
T Consensus 63 ~i~~~~grt~eqK~~l~~~l~~~l~~~lg~~~~~v~V~i~e 103 (128)
T 1mww_A 63 EINLMAGRMEGTKKRLIKMLFSELEYKLGIRAHDVEITIKE 103 (128)
T ss_dssp EEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 34556778999999999999999986 78875543333333
No 261
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=21.70 E-value=1.5e+02 Score=18.17 Aligned_cols=35 Identities=11% Similarity=0.014 Sum_probs=21.7
Q ss_pred CCeEEEEEecCccEEEEc-ccCHHHHHHH-HHHHHHHH
Q psy2814 44 NPRTTCLAFQSGKLLILG-AKHEHDCKLA-SRKFAKIL 79 (176)
Q Consensus 44 ~p~~t~~If~sGKivitG-aks~~~~~~a-~~~i~~~L 79 (176)
+|.-++.++-+|+ ..+| ++|..+|+.. ++..+..|
T Consensus 31 ~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L 67 (69)
T 1di2_A 31 KREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKF 67 (69)
T ss_dssp GCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHH
Confidence 4667777888887 5555 4577776644 44444444
No 262
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=21.67 E-value=36 Score=25.37 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=31.5
Q ss_pred EEEcCCeEE-EEEecCccEEEEccc---CHHHHHHHHHHHHHHHHhcCCC
Q psy2814 40 MKILNPRTT-CLAFQSGKLLILGAK---HEHDCKLASRKFAKILKQLGHP 85 (176)
Q Consensus 40 ~R~~~p~~t-~~If~sGKivitGak---s~~~~~~a~~~i~~~L~~~g~~ 85 (176)
+-+.++.-. ++.++||-+..-|.+ |.-.+..|++.+++.++++|+.
T Consensus 42 VtiTD~~G~~~~~~ssgg~~~k~~r~ksTpyAAq~aa~~~a~~a~e~Gi~ 91 (151)
T 2xzm_K 42 IHVTDLSGRETLVRVTGGMKVKADREESSPYAAMQAAIDVVNRCKELKIN 91 (151)
T ss_dssp CEEECTTCCSEEEECCHHHHCSSGGGGSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCEEEEEecCcceEeCCCCcCCHHHHHHHHHHHHHHHHHcCCe
Confidence 334444432 556677776655543 4668889999999999999874
No 263
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=21.49 E-value=1.1e+02 Score=21.80 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=26.0
Q ss_pred cceEEEEecCCHHHHHHHHHHHHHHHHhhhc
Q psy2814 145 NGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175 (176)
Q Consensus 145 sGkivitGaks~~~~~~a~~~i~~~L~~~r~ 175 (176)
...++.|...+++++.+.++.|...|.++.+
T Consensus 146 ~~~~i~~~~~~~~ev~~~v~~i~~~l~~~~~ 176 (180)
T 3iij_A 146 EEIVHQLPSNKPEELENNVDQILKWIEQWIK 176 (180)
T ss_dssp GGGEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4677778889999999999999999988753
No 264
>2jkg_A Profilin; proline-rich ligand, protein-binding, malaria, cytoskeleton; 1.89A {Plasmodium falciparum} PDB: 2jkf_A
Probab=21.44 E-value=1.7e+02 Score=22.40 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=29.5
Q ss_pred EEcCCeEEEEEecC-ccEEEEcccCHH------HHHHHHHHHHHHHHhcCCC
Q psy2814 41 KILNPRTTCLAFQS-GKLLILGAKHEH------DCKLASRKFAKILKQLGHP 85 (176)
Q Consensus 41 R~~~p~~t~~If~s-GKivitGaks~~------~~~~a~~~i~~~L~~~g~~ 85 (176)
+.+..+.=+.|..+ |.-++.|.-+++ ++..++.+|++.|.+.|+.
T Consensus 121 ~gkKgkgGv~ivKT~~qaiVIg~YdE~k~~~~g~c~~~ve~LadYL~~~Gy~ 172 (179)
T 2jkg_A 121 TCAKLKGGLHLVKVPGGNILVVLYDEEKEQDRGNSKIAALTFAKELAESSQL 172 (179)
T ss_dssp EEEETTEEEEEEEETTTEEEEEEEEGGGTCCHHHHHHHHHHHHHHHHHC---
T ss_pred EEecCCCcEEEEEECCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHcCch
Confidence 33344455556666 566666654554 9999999999999999875
No 265
>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}
Probab=21.44 E-value=98 Score=23.86 Aligned_cols=24 Identities=13% Similarity=0.279 Sum_probs=21.4
Q ss_pred cceEEEEecCCHHHHHHHHHHHHH
Q psy2814 145 NGRIVITGAKSRSELHEAFDNIYP 168 (176)
Q Consensus 145 sGkivitGaks~~~~~~a~~~i~~ 168 (176)
+|+..+.|+.+.+.+.++++++..
T Consensus 190 ~g~~~v~Ga~~~e~~~~~i~~~~~ 213 (239)
T 3gl5_A 190 DRAYGVSGAQPAEVFTQALTQAWG 213 (239)
T ss_dssp TTTEEEESSCCHHHHHHHHHHHHH
T ss_pred CCcEeecCCCCHHHHHHHHHHHHh
Confidence 899889999999999999988754
No 266
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=21.42 E-value=1.1e+02 Score=21.97 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=23.8
Q ss_pred EEEEEeccceEEEE--ecCCHHHHHHHHHHHH
Q psy2814 138 VVLLIFVNGRIVIT--GAKSRSELHEAFDNIY 167 (176)
Q Consensus 138 ~t~~IF~sGkivit--Gaks~~~~~~a~~~i~ 167 (176)
.+++|.+.|+|+-. |..+.+++.+.++.++
T Consensus 153 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 184 (190)
T 2vup_A 153 TSFLIDRDGVPVERFSPGASVKDIEKKLIPLL 184 (190)
T ss_dssp CEEEECTTSCEEEEECTTCCHHHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 58899999999754 7778888887777664
No 267
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=21.38 E-value=63 Score=22.17 Aligned_cols=25 Identities=8% Similarity=-0.003 Sum_probs=19.9
Q ss_pred EEEEeccceEEEEecCCHHHHHHHH
Q psy2814 139 VLLIFVNGRIVITGAKSRSELHEAF 163 (176)
Q Consensus 139 t~~IF~sGkivitGaks~~~~~~a~ 163 (176)
++.+|..|+.+..|.-+.+++++.+
T Consensus 82 ~l~~~~dG~~v~~g~~~~~~L~~~L 106 (107)
T 2fgx_A 82 VLFAVNEDKELCHYFLDSDVIGAYL 106 (107)
T ss_dssp EEEETTTTEEEECSSCCCHHHHHHH
T ss_pred eEEEEECCEEEEecCCCHHHHHHHh
Confidence 5557889999888988888887764
No 268
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=21.32 E-value=1.6e+02 Score=18.34 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=24.5
Q ss_pred CCeEEEEEecCccEEEEc-ccCHHHHHH-HHHHHHHHHHh
Q psy2814 44 NPRTTCLAFQSGKLLILG-AKHEHDCKL-ASRKFAKILKQ 81 (176)
Q Consensus 44 ~p~~t~~If~sGKivitG-aks~~~~~~-a~~~i~~~L~~ 81 (176)
+|.-++.+.-+|+.. +| ++|..+|+. |++..+..|.+
T Consensus 33 ~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 33 APLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhc
Confidence 567788888889875 55 467777764 45555555544
No 269
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=21.28 E-value=79 Score=21.73 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=19.5
Q ss_pred CCCcccCCCCCceeEEEEcCCeEEEEEeccc
Q psy2814 116 SQFSSYEPELFPGLIYRMVKPRVVLLIFVNG 146 (176)
Q Consensus 116 ~~~~~YePe~fpgl~~r~~~~~~t~~IF~sG 146 (176)
+..++|||.. .+.+++ + ...+++|++|
T Consensus 76 Gs~vThe~~~--fiyF~~-g-~~aiLlfKt~ 102 (102)
T 1yo3_A 76 GSYVTHETKN--FIYFYI-G-QVAILLFKSG 102 (102)
T ss_dssp CCEEESCCCE--EEEEEE-T-TEEEEEEECC
T ss_pred eEEEEEeCCc--EEEEEE-C-CEEEEEEecC
Confidence 4567888774 566777 3 4789999987
No 270
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=21.17 E-value=3e+02 Score=21.48 Aligned_cols=23 Identities=9% Similarity=0.193 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHHHHHhhhcC
Q psy2814 154 KSRSELHEAFDNIYPVLKSFKKQ 176 (176)
Q Consensus 154 ks~~~~~~a~~~i~~~L~~~r~~ 176 (176)
.++++++++++.|...+.+++++
T Consensus 369 ~~~~~i~~~~~~l~~~l~~~~~~ 391 (393)
T 3kgw_A 369 ATTENVDRVAEALREALQHCPKN 391 (393)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCBC
T ss_pred CCHHHHHHHHHHHHHHHHhhhhc
Confidence 48999999999999999988753
No 271
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=20.91 E-value=97 Score=23.99 Aligned_cols=42 Identities=29% Similarity=0.473 Sum_probs=31.7
Q ss_pred CeEEEEEecCccEEEEcccCHHHHHHHHHHHHHHHHhcCCCccc
Q psy2814 45 PRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKY 88 (176)
Q Consensus 45 p~~t~~If~sGKivitGaks~~~~~~a~~~i~~~L~~~g~~~~~ 88 (176)
|...+.+|-.- |.+ ++++.++....++.+...|++.|+.+..
T Consensus 192 ~~~~v~~Y~DD-ili-~s~~~eeh~~~l~~v~~~L~~~gl~l~~ 233 (255)
T 3fsi_A 192 PDLILLQYVDD-LLL-AATSELDCQQGTRALLQTLGNLGYRASA 233 (255)
T ss_dssp TTCEEEEETTE-EEE-EESSHHHHHHHHHHHHHHHHHHTCCBCT
T ss_pred cCcEEEEEcCC-eEE-EeCCHHHHHHHHHHHHHHHHHCCeEECH
Confidence 34466677665 333 4458999999999999999999987664
No 272
>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A {Schizosaccharomyces pombe} SCOP: d.110.1.0 PDB: 3dav_A
Probab=20.71 E-value=2.2e+02 Score=19.82 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=28.8
Q ss_pred EEEEEecCccEEEEccc----CHHHHHHHHHHHHHHHHhcCC
Q psy2814 47 TTCLAFQSGKLLILGAK----HEHDCKLASRKFAKILKQLGH 84 (176)
Q Consensus 47 ~t~~If~sGKivitGak----s~~~~~~a~~~i~~~L~~~g~ 84 (176)
.-+.|..+++.++.|.- ...++..++.++++.|.+.|+
T Consensus 86 ~Gv~i~kT~~aivi~~y~e~~~~g~~~~~ve~ladYL~~~Gy 127 (127)
T 3d9y_A 86 EGIICVATKLCILVSHYPETTLPGEAAKITEALADYLVGVGY 127 (127)
T ss_dssp EEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred ceEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 34566777777776543 456899999999999999875
No 273
>3hrg_A Uncharacterized protein BT_3980 with actin-like A fold; NP_812891.1, bacteroides thetaiotaomicron BT_3980; HET: MSE UNL; 1.85A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.60 E-value=2.5e+02 Score=22.08 Aligned_cols=97 Identities=10% Similarity=0.021 Sum_probs=65.5
Q ss_pred hcCCCcEEccCC---------------CceEEEEEcCCeEEEEEecCccEEEEcccCHHHHHHHHHHHHHHHHhcCCCcc
Q psy2814 23 SRVRYSEYNPGK---------------FHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIK 87 (176)
Q Consensus 23 ~~~~n~~Y~P~~---------------fpgl~~R~~~p~~t~~If~sGKivitGaks~~~~~~a~~~i~~~L~~~g~~~~ 87 (176)
...++++|-|.. -+.+.+-+++-...+.+|.+||+...=.=+.+.+..++=-++-.++++|++..
T Consensus 133 ~~f~~~~~~h~~~~ll~~l~~~s~~~~~~~ly~~~~~~~~~i~~f~~~kL~f~NsF~~~~~~D~lYYlL~v~~QL~ld~e 212 (257)
T 3hrg_A 133 EQYPEARFYSQSTPLIEYFSIKSRLGNSKKMYASVRKDAIDIYCFERGQLLLANSFECMQTEDRIYYLLYVWKQLEFNQE 212 (257)
T ss_dssp HHCTTCEEEETHHHHHHHHHHHTTSSSSCEEEEEECSSEEEEEEEETTEEEEEEEEECCSHHHHHHHHHHHHHHTTCCTT
T ss_pred HhCCCcEEEECcHHHHHHHHhhhccCCCcEEEEEEECCEEEEEEEECCEEEEEEeEecCCHHHHHHHHHHHHHHcCCCcc
Confidence 356777776641 13466778888999999999999988777777777788889999999999876
Q ss_pred cceeeeeeEEEEeeeCcccCHHHHHHHcCCCcc-cCCC
Q psy2814 88 YQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS-YEPE 124 (176)
Q Consensus 88 ~~~~~i~nIvas~~l~~~i~L~~l~~~~~~~~~-YePe 124 (176)
.-. +.-++++...=++-+....+-.++. .+|+
T Consensus 213 ~~~-----l~l~G~i~~~~~l~~~L~~Yi~~v~~~~p~ 245 (257)
T 3hrg_A 213 RDE-----LHLTGTLSDKETLMNELKKFILQVFIMNPA 245 (257)
T ss_dssp TCE-----EEEEECCTTHHHHHHHHHHHCSCEEECSSS
T ss_pred ccE-----EEEEecCCCcHHHHHHHHHHHhhEEEeCcc
Confidence 433 3445565554444444444334433 4454
No 274
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=20.56 E-value=1.5e+02 Score=17.69 Aligned_cols=32 Identities=13% Similarity=0.311 Sum_probs=24.8
Q ss_pred EEEcccCHHHHHHHHHHHHHHHHh-cCCCcccc
Q psy2814 58 LILGAKHEHDCKLASRKFAKILKQ-LGHPIKYQ 89 (176)
Q Consensus 58 vitGaks~~~~~~a~~~i~~~L~~-~g~~~~~~ 89 (176)
.+.+.+|.|+-+.-++.+.+.+.+ +|.+....
T Consensus 6 ~~~~Grs~eqk~~L~~~it~~~~~~lg~p~~~v 38 (65)
T 3ry0_A 6 TLLEGRSPQEVAALGEALTAAAHETLGTPVEAV 38 (65)
T ss_dssp EEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred EEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccE
Confidence 344457999999999999999987 78875543
No 275
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=20.55 E-value=42 Score=25.09 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=36.4
Q ss_pred EEEc-CCeEEEEEecCccEEE-EcccCHHHHHHHHHHHHHHHHhcCCCccc
Q psy2814 40 MKIL-NPRTTCLAFQSGKLLI-LGAKHEHDCKLASRKFAKILKQLGHPIKY 88 (176)
Q Consensus 40 ~R~~-~p~~t~~If~sGKivi-tGaks~~~~~~a~~~i~~~L~~~g~~~~~ 88 (176)
|++. .|+..++|+.+.+.-- ++-+.-..+..-++.+.+.++++||+|..
T Consensus 26 Y~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~ 76 (167)
T 1pyo_A 26 YRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHV 76 (167)
T ss_dssp CCCCCSSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEEE
T ss_pred ccCCCCCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEEE
Confidence 4444 5789999999987642 24445667777888899999999998653
No 276
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=20.54 E-value=1.3e+02 Score=21.89 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=21.5
Q ss_pred ceEEEEecCCHHHHHHHHHHHHHHHHh
Q psy2814 146 GRIVITGAKSRSELHEAFDNIYPVLKS 172 (176)
Q Consensus 146 GkivitGaks~~~~~~a~~~i~~~L~~ 172 (176)
+.|+|+|. .+.++.|...|...|.+
T Consensus 151 ~~v~I~G~--~~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 151 RVVTVSGE--PEQNRKAVELIIQKIQE 175 (178)
T ss_dssp EEEEEESS--HHHHHHHHHHHHHHHHS
T ss_pred eEEEEEcC--HHHHHHHHHHHHHHHHh
Confidence 68999997 58999999999988865
No 277
>3tqm_A Ribosome-associated factor Y; protein synthesis, protein binding; 2.45A {Coxiella burnetii}
Probab=20.53 E-value=1.1e+02 Score=20.27 Aligned_cols=37 Identities=14% Similarity=0.208 Sum_probs=21.6
Q ss_pred eEEEEEeccceEEEEecCCHHHHHHHH----HHHHHHHHhhh
Q psy2814 137 RVVLLIFVNGRIVITGAKSRSELHEAF----DNIYPVLKSFK 174 (176)
Q Consensus 137 ~~t~~IF~sGkivitGaks~~~~~~a~----~~i~~~L~~~r 174 (176)
.+.+.|...|.. +.+..+-++++.|+ +++-+.|.+++
T Consensus 49 ~~ei~i~~~g~~-l~a~~~~~d~y~Aid~a~dklerqL~k~k 89 (96)
T 3tqm_A 49 IVDANVKLPGST-INAQAESDDMYKTVDLLMHKLETQLSKYK 89 (96)
T ss_dssp EEEEEEEETTEE-EEEEECCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCcE-EEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 466777777874 44444555665555 45555555554
No 278
>3i96_A Ethanolamine utilization protein EUTS; structural protein; HET: NHE; 1.65A {Escherichia coli} PDB: 3ia0_A
Probab=20.50 E-value=1.2e+02 Score=21.53 Aligned_cols=30 Identities=27% Similarity=0.237 Sum_probs=25.7
Q ss_pred CccEEEEcccCHHHHHHHHHHHHHHHHh-cCCC
Q psy2814 54 SGKLLILGAKHEHDCKLASRKFAKILKQ-LGHP 85 (176)
Q Consensus 54 sGKivitGaks~~~~~~a~~~i~~~L~~-~g~~ 85 (176)
+|-++++| ++.+.+.|++.....+++ +||.
T Consensus 74 ~G~vii~G--dVsaV~aAvea~~~~~~~~l~f~ 104 (119)
T 3i96_A 74 SGALVIYG--SVGAVEEALSQTVSGLGRLLNYT 104 (119)
T ss_dssp TCEEEEEE--CHHHHHHHHHHHHHHHHHHHCCB
T ss_pred ccEEEEEE--CHHHHHHHHHHHHHHHhhccCeE
Confidence 58888999 999999999999999965 5664
No 279
>2noc_A Putative periplasmic protein; GFT STR106, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella choleraesuis} SCOP: d.230.6.1
Probab=20.45 E-value=49 Score=22.82 Aligned_cols=25 Identities=24% Similarity=0.143 Sum_probs=20.3
Q ss_pred ccceEEEEecCCHHHHHHHHHHHHH
Q psy2814 144 VNGRIVITGAKSRSELHEAFDNIYP 168 (176)
Q Consensus 144 ~sGkivitGaks~~~~~~a~~~i~~ 168 (176)
+-|.|+++|..+++|+++++.+-..
T Consensus 39 ~iGtISvsg~~s~~da~~~La~kAd 63 (99)
T 2noc_A 39 KIGTISTTGEMSPLDAREDLIKKAD 63 (99)
T ss_dssp EEEEEECCSCCCHHHHHHHHHHHHH
T ss_pred eeeEEEEcCCCCHHHHHHHHHHHHH
Confidence 3478999998899999999877543
No 280
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=20.45 E-value=1.4e+02 Score=17.41 Aligned_cols=39 Identities=13% Similarity=0.270 Sum_probs=27.6
Q ss_pred EEEEcccCHHHHHHHHHHHHHHHHh-cCCCcccceeeeee
Q psy2814 57 LLILGAKHEHDCKLASRKFAKILKQ-LGHPIKYQGFKIHN 95 (176)
Q Consensus 57 ivitGaks~~~~~~a~~~i~~~L~~-~g~~~~~~~~~i~n 95 (176)
|.+.+.+|.++-+.-++.+.+.|.+ +|.+...--+.++.
T Consensus 6 i~~~~g~s~eqk~~l~~~lt~~l~~~lg~~~~~v~V~i~e 45 (64)
T 3abf_A 6 VTLLEGRPPEKKRELVRRLTEMASRLLGEPYEEVRVILYE 45 (64)
T ss_dssp EEEETTCCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 3445668999999999999999987 78875543333433
No 281
>3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Salmonella typhimurium}
Probab=20.35 E-value=41 Score=23.64 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=25.8
Q ss_pred EEecCccEEEEcccCHHHHHHHHHHHHHHHHhcCCCcc
Q psy2814 50 LAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIK 87 (176)
Q Consensus 50 ~If~sGKivitGaks~~~~~~a~~~i~~~L~~~g~~~~ 87 (176)
++|-||-+-+.+..=.++++.+++++...|+..|....
T Consensus 23 ~lfvSGq~~~d~~d~~~Q~~~~l~nl~~~L~~aG~~~~ 60 (124)
T 3gtz_A 23 TLWYTGVPENLDADAFEQTANTLAQIDAVLEKQGSSKS 60 (124)
T ss_dssp EEEEEECCSCTTSCHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred EEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 35555544332233458899999999999999987543
No 282
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=20.19 E-value=39 Score=27.08 Aligned_cols=48 Identities=13% Similarity=0.263 Sum_probs=33.3
Q ss_pred EEEc-CCeEEEEEecCccEEE-EcccCHHHHHHHHHHHHHHHHhcCCCcc
Q psy2814 40 MKIL-NPRTTCLAFQSGKLLI-LGAKHEHDCKLASRKFAKILKQLGHPIK 87 (176)
Q Consensus 40 ~R~~-~p~~t~~If~sGKivi-tGaks~~~~~~a~~~i~~~L~~~g~~~~ 87 (176)
|++. .|+..++|+.+.+.-- ++-+....+..=++.+.+.|+++||+|.
T Consensus 14 Y~m~~~~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~ 63 (277)
T 1nw9_B 14 YILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVE 63 (277)
T ss_dssp CCCCCSSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEE
T ss_pred eeCCCCcccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE
Confidence 5554 5889999999987642 1334455566667778888888887543
No 283
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.18 E-value=9.6 Score=26.38 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=25.0
Q ss_pred EEEEEecCccEE--EEcccCHHHHHHHHHHHHHHHHhc
Q psy2814 47 TTCLAFQSGKLL--ILGAKHEHDCKLASRKFAKILKQL 82 (176)
Q Consensus 47 ~t~~If~sGKiv--itGaks~~~~~~a~~~i~~~L~~~ 82 (176)
.|+.+|.+|+++ ..|..+.+++...+++...+++.+
T Consensus 89 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~~~~~~~ 126 (137)
T 2dj0_A 89 PTLILFQGGKEAMRRPQIDKKGRAVSWTFSEENVIREF 126 (137)
T ss_dssp SEEEEESSSSEEEEESCBCSSSCBCCCCCCHHHHHHHH
T ss_pred CEEEEEECCEEEEEecCcCchHHHHHHHhcccchhhee
Confidence 478889999987 788888777665555544444443
Done!