RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2814
(176 letters)
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus,
transcription; 1.90A {Encephalitozoon cuniculi} PDB:
3oci_A 3oc3_C
Length = 218
Score = 208 bits (529), Expect = 5e-69
Identities = 91/172 (52%), Positives = 130/172 (75%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I R R +EYNP +F +IM+I P+TT L F SGK++I GAK
Sbjct: 46 QNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAK 105
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E ++A++++AKI+ +LG + FKI NIV +CD++F ++L+ L + HS + SYEP
Sbjct: 106 SEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEP 165
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R ++++AF+NIYPVL +K
Sbjct: 166 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQHRK 217
Score = 78.2 bits (192), Expect = 2e-18
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 92 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
+ N+V T ++ + L + ++ + Y P+ F +I R+ +P+ LIF +G++VIT
Sbjct: 44 TLQNVVATVNLSCKLDLKNIAL-RARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVIT 102
Query: 152 GAKSRSELHEAFDNIYPVLKSFKKQ 176
GAKS A ++
Sbjct: 103 GAKSEKSSRMAAQRYAKIIHKLGFN 127
Score = 74.8 bits (183), Expect = 3e-17
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQIN-SRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLI 59
QN+V + + + L + + Y Y P F GLI +++ P+ L F SGK+++
Sbjct: 133 FKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVL 192
Query: 60 LGAKHEHDCKLASRKFAKILKQ 81
GAK D A +L Q
Sbjct: 193 TGAKVRDDIYQAFNNIYPVLIQ 214
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA,
transcription/DNA complex; 2.50A {Saccharomyces
cerevisiae} SCOP: d.129.1.1 d.129.1.1
Length = 240
Score = 207 bits (528), Expect = 1e-68
Identities = 98/175 (56%), Positives = 133/175 (76%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLIL 60
QN+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++
Sbjct: 65 PTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVT 124
Query: 61 GAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSS 120
GAK E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSS
Sbjct: 125 GAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSS 184
Query: 121 YEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
YEPELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 185 YEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 239
Score = 89.4 bits (221), Expect = 2e-22
Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Query: 52 FQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDAL 111
+ G + E D K A+ + K + + NIV T + + L +
Sbjct: 30 NRDGTKPATTFQSEEDIKRAAPESEKDTSATSGIV----PTLQNIVATVTLGCRLDLKTV 85
Query: 112 HHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLK 171
H++ + Y P+ F +I R+ +P+ LIF +G++V+TGAKS + A +++
Sbjct: 86 AL-HARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQ 144
Query: 172 SFKKQ 176
Sbjct: 145 KIGFA 149
Score = 27.4 bits (60), Expect = 2.2
Identities = 5/44 (11%), Positives = 13/44 (29%)
Query: 128 GLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLK 171
+++ +V +G T +S ++ A
Sbjct: 15 KIVFDPNTRQVWENQNRDGTKPATTFQSEEDIKRAAPESEKDTS 58
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding
protein, transcription factor, DNA binding protein;
2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1
d.129.1.1
Length = 198
Score = 199 bits (508), Expect = 4e-66
Identities = 68/174 (39%), Positives = 103/174 (59%), Gaps = 2/174 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+++ LDL + V EY+P +F GLI ++ +P+ T L F+SGK+++ GAK
Sbjct: 16 ENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAK 75
Query: 64 HEHDCKLASRKFAKILKQLGHPIKY-QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
+ A ++ K LK+ G + +I NIV + ++ V LD + + + YE
Sbjct: 76 STDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLL-ENNMYE 134
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKKQ 176
PE FPGLIYRM +PRVVLLIF +G++VITGAK E+H+A I+ L
Sbjct: 135 PEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDEVHKAVKKIFDKLVELDCV 188
Score = 77.0 bits (189), Expect = 4e-18
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I NIV T + + L A+ Y+P+ FPGLI+R+ P++ LIF +G++V+
Sbjct: 13 VNIENIVATVTLDQTLDLYAMER-SVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVV 71
Query: 151 TGAKSRSELHEAFDNIYPVLKSF 173
TGAKS EL +A I LK +
Sbjct: 72 TGAKSTDELIKAVKRIIKTLKKY 94
Score = 76.6 bits (188), Expect = 5e-18
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QN+V + ++ ++L++ + + Y P +F GLI ++ PR L F SGK++I G
Sbjct: 105 QIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITG 164
Query: 62 AKHEHDCKLASRKFAKILKQLG 83
AK E + A +K L +L
Sbjct: 165 AKREDEVHKAVKKIFDKLVELD 186
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex,
transcription/DNA complex; HET: DNA; 1.80A
{Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A*
1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A*
1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E*
...
Length = 180
Score = 198 bits (505), Expect = 8e-66
Identities = 98/172 (56%), Positives = 133/172 (77%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++GC LDL + R +EYNP +F +IM+I P+TT L F SGK+++ GAK
Sbjct: 8 QNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAK 67
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEP 123
E D KLASRK+A+I++++G K+ FKI NIV +CDV+FP++L+ L H FSSYEP
Sbjct: 68 SEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEP 127
Query: 124 ELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
ELFPGLIYRMVKP++VLLIFV+G+IV+TGAK R E+++AF+ IYPVL F+K
Sbjct: 128 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 179
Score = 73.1 bits (179), Expect = 6e-17
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 92 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
+ NIV T + + L + +H++ + Y P+ F +I R+ +P+ LIF +G++V+T
Sbjct: 6 TLQNIVATVTLGCRLDLKTVA-LHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVT 64
Query: 152 GAKSRSELHEAFDNIYPVLKSFKKQ 176
GAKS + A +++
Sbjct: 65 GAKSEDDSKLASRKYARIIQKIGFA 89
Score = 71.6 bits (175), Expect = 2e-16
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 1 MHYQNMVGTISVGCPLDLNQINSR-VRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLI 59
QN+VG+ V P+ L + +S Y P F GLI +++ P+ L F SGK+++
Sbjct: 95 FKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVL 154
Query: 60 LGAKHEHDCKLASRKFAKILKQL 82
GAK + A +L +
Sbjct: 155 TGAKQREEIYQAFEAIYPVLSEF 177
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome
binding, complex (ribosome binding/ DNA); HET: DNA 5IU;
2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB:
1d3u_A* 1pcz_A
Length = 182
Score = 195 bits (496), Expect = 2e-64
Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 2/171 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++ GAK
Sbjct: 12 ENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAK 71
Query: 64 HEHDCKLASRKFAKILKQLGHPIKY-QGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
D + A K A+ LK +G K + N+V + D+ LD + YE
Sbjct: 72 SVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTL-PNCEYE 130
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSF 173
PE FPG+IYR+ +P+ V+L+F +G+IV +GAKS ++ EA + L +
Sbjct: 131 PEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDKY 181
Score = 77.7 bits (191), Expect = 1e-18
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QNMV + +G +L+ + + EY P +F G+I ++ P++ L F SGK++ G
Sbjct: 101 DVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSG 160
Query: 62 AKHEHDCKLASRKFAKILKQ 81
AK E D A RK + L +
Sbjct: 161 AKSEADAWEAVRKLLRELDK 180
Score = 77.7 bits (191), Expect = 1e-18
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I NIV + D+ + L+ + S Y PE FPG+I + P+V LLIF +G++V+
Sbjct: 9 LRIENIVASVDLFAQLDLEKVLD-LCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVV 67
Query: 151 TGAKSRSELHEAFDNIYPVLKSF 173
TGAKS ++ A + LKS
Sbjct: 68 TGAKSVQDIERAVAKLAQKLKSI 90
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein,
transcription factor, transcription regulation; 1.90A
{Methanococcus jannaschii}
Length = 188
Score = 192 bits (489), Expect = 3e-63
Identities = 61/173 (35%), Positives = 99/173 (57%), Gaps = 2/173 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
N+V + +G +DL ++ + +EY P +F GL+ ++ P+ L F+SGK+ GAK
Sbjct: 16 VNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAK 75
Query: 64 HEHDCKLASRKFAKILKQLGHP-IKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE 122
+ + ++A +K K LK G I+ KI N+V T D+ LD + + + + YE
Sbjct: 76 SKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIALMV-EGTEYE 134
Query: 123 PELFPGLIYRMVKPRVVLLIFVNGRIVITGAKSRSELHEAFDNIYPVLKSFKK 175
PE FPGL+YR+ P+VV+LIF +G++VITG KS + A I +K ++
Sbjct: 135 PEQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALKKILDTIKEVQE 187
Score = 80.8 bits (199), Expect = 9e-20
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 2 HYQNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILG 61
QNMV T +G +L+ I V +EY P +F GL+ ++ +P+ L F SGK++I G
Sbjct: 105 KIQNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITG 164
Query: 62 AKHEHDCKLASRKFAKILKQL 82
K E D K A +K +K++
Sbjct: 165 LKSEEDAKRALKKILDTIKEV 185
Score = 77.0 bits (189), Expect = 3e-18
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
KI N+V + + + L+ + + + YEPE FPGL+ R+ P+V LLIF +G++
Sbjct: 13 IKIVNVVVSTKIGDNIDLEEVAM-ILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNC 71
Query: 151 TGAKSRSELHEAFDNIYPVLKSFKKQ 176
TGAKS+ E A I LK
Sbjct: 72 TGAKSKEEAEIAIKKIIKELKDAGID 97
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.040
Identities = 38/190 (20%), Positives = 59/190 (31%), Gaps = 72/190 (37%)
Query: 4 QNMVGTISVGCPLDL----------------NQINSRVRYSEYNPGKFHGLIMKILNPRT 47
+N+V +S G P L +Q SR+ +SE KF + + +P
Sbjct: 375 KNLV--VS-GPPQSLYGLNLTLRKAKAPSGLDQ--SRIPFSERKL-KFSNRFLPVASP-- 426
Query: 48 TCLAFQSGKLLILGAKHEHDCKLASRKFAKILKQLGHPI----------KYQGFKIHNIV 97
F S LL+ A + L + K + P+ G I
Sbjct: 427 ----FHS-HLLV-PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI- 479
Query: 98 CTCDVRFPV------KLDALHHVHSQFSSYEPELF-PG-------LIYRMVKPRVVLLIF 143
C +R PV + A H + F PG L +R V
Sbjct: 480 VDCIIRLPVKWETTTQFKATHIL----------DFGPGGASGLGVLTHRNKDGTGV---- 525
Query: 144 VNGRIVITGA 153
R+++ G
Sbjct: 526 ---RVIVAGT 532
Score = 29.6 bits (66), Expect = 0.60
Identities = 24/162 (14%), Positives = 45/162 (27%), Gaps = 47/162 (29%)
Query: 24 RVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAKHEHDC-KLASRKFAKILKQL 82
R Y Y+ ++ L S + L + D K+ ++ IL+ L
Sbjct: 174 RDLYQTYHV---------LVGD----LIKFSAETLSELIRTTLDAEKVFTQGL-NILEWL 219
Query: 83 GHPIK-----YQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYE-----PELFPGLIYR 132
+P Y + + + P L + Q + Y PG
Sbjct: 220 ENPSNTPDKDY--------LLSIPISCP--LIGV----IQLAHYVVTAKLLGFTPG---- 261
Query: 133 MVKPRVVLLIFVNGRIV----ITGAKSRSELHEAFDNIYPVL 170
++ + + +V I S + VL
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Score = 28.5 bits (63), Expect = 1.3
Identities = 32/187 (17%), Positives = 46/187 (24%), Gaps = 66/187 (35%)
Query: 39 IMKILNPRTTCLAFQS--GKLL--------ILGAKHEHDCKLASRKFAKILKQLGHPIKY 88
I K +N +T F+S G L + L + + LK G
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSATQFTQPALT---------LMEKAAFEDLKSKGLIPAD 1756
Query: 89 QGFKIHNI------VCTCDVRFPVKLDALHHVHS--QFSSYEPELFPGLI--YRM--VKP 136
F H++ DV ++ + V Y M + P
Sbjct: 1757 ATFAGHSLGEYAALASLADV-MSIE-SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP 1814
Query: 137 RVVLLIF----------------------VN----GR-IVITGAKSRSELHEAFDNIYPV 169
V F VN + V G A D + V
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDL------RALDTVTNV 1868
Query: 170 LKSFKKQ 176
L K Q
Sbjct: 1869 LNFIKLQ 1875
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural
genomics, structural genomics consortium, SGC; 1.80A
{Toxoplasma gondii}
Length = 413
Score = 31.9 bits (72), Expect = 0.080
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 11/45 (24%)
Query: 108 LDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITG 152
+ L +H GL++ ++P ++L G + +TG
Sbjct: 221 IRLLASLHHY----------GLVHTYLRPVDIVL-DQRGGVFLTG 254
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron
transport; HET: PO4; 1.18A {Hyphomicrobium
denitrificans}
Length = 124
Score = 29.7 bits (66), Expect = 0.26
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 2 HY-QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKIL 43
HY MV + VG P++L+QI + + + G I K++
Sbjct: 82 HYGMGMVVLVQVGKPVNLDQIKE-YKATGLAKKRLDGEIAKVV 123
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 29.8 bits (67), Expect = 0.43
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 12/44 (27%)
Query: 108 LDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
L AL ++HS GL+Y +KP ++L ++ +
Sbjct: 192 LPALSYLHSI----------GLVYNDLKPENIML--TEEQLKLI 223
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP
binding, transferase-transfera inhibitor complex; HET:
046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A*
3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A*
3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A*
Length = 295
Score = 29.2 bits (66), Expect = 0.68
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 8/35 (22%)
Query: 76 AKILKQLGHP--IKYQGFKIHNIVCTCDVRFPVKL 108
+ILK L H +KY+G VC R +KL
Sbjct: 62 IEILKSLQHDNIVKYKG------VCYSAGRRNLKL 90
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding,
tyrosine-protein kinase, proto-oncogene, phosphoprotein,
disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo
sapiens}
Length = 326
Score = 28.9 bits (65), Expect = 0.72
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 8/35 (22%)
Query: 76 AKILKQLGHP--IKYQGFKIHNIVCTCDVRFPVKL 108
+ILK L H +KY+G VC R +KL
Sbjct: 93 IEILKSLQHDNIVKYKG------VCYSAGRRNLKL 121
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel,
electron transfer, redox, electron transport; 2.00A
{Sinorhizobium meliloti}
Length = 127
Score = 28.1 bits (62), Expect = 0.99
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 2 HY-QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKI 42
H M+G I VG P +L + ++Y + + +I
Sbjct: 83 HVGMGMIGAIVVGEPANLEAVKG-IKYPGKSKAAAEKIFAEI 123
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.00
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 110 ALHHVHSQFSSYEPELFPGL 129
AL + + Y + P L
Sbjct: 21 ALKKLQASLKLYADDSAPAL 40
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.47.1.1
Length = 85
Score = 27.3 bits (61), Expect = 1.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 142 IFVNGRIVITGAKSRSELHEAFD 164
I +NG + GA SR EL EA +
Sbjct: 59 IAINGVVRFVGAPSREELFEAIN 81
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain,
transferase-transferase inhibit complex; HET: PTR 0NT;
1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A*
3eyh_A*
Length = 302
Score = 28.4 bits (64), Expect = 1.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Query: 76 AKILKQLGHP--IKYQGFKIHNIVCTCDVRFPVKL 108
+IL+ L H +KY+G +CT D +KL
Sbjct: 74 IEILRNLYHENIVKYKG------ICTEDGGNGIKL 102
>3drf_A Oligopeptide-binding protein OPPA; oligo-peptide binding,
voluminous binding cavity, venus FLY- trap, peptide
binding protein; 1.30A {Lactococcus lactis} PDB: 3drg_A
3drh_A 3dri_A 3drj_A 3drk_A 3fto_A 3rya_A 3ryb_A
Length = 590
Score = 28.2 bits (63), Expect = 1.5
Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 8/93 (8%)
Query: 22 NSRVRYSEYNPG------KFHGLIMKILNPRTTCLAFQSGKL-LILGAKHEHDCKLASRK 74
++Y NP K + + ++++ + A S K +I G ++ + K
Sbjct: 232 GESIKY-VPNPYYWGEKPKLNSITYEVVSTAKSVAALSSSKYDIINGMVSSQYKQVKNLK 290
Query: 75 FAKILKQLGHPIKYQGFKIHNIVCTCDVRFPVK 107
K+L Q I + + + + +
Sbjct: 291 GYKVLGQQAMYISLMYYNLGHYDAKNSINVQDR 323
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN
inhibitor, ATP-binding mutation, membrane,
nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A
{Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A*
Length = 327
Score = 27.7 bits (62), Expect = 2.2
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 8/35 (22%)
Query: 76 AKILKQLGHP--IKYQGFKIHNIVCTCDVRFPVKL 108
+ILK L +KY+G V R ++L
Sbjct: 75 IQILKALHSDFIVKYRG------VSYGPGRQSLRL 103
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA;
HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Length = 437
Score = 27.4 bits (61), Expect = 2.8
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 11/42 (26%)
Query: 110 ALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
A+ VH ++R +KP +L+ +NG I +
Sbjct: 187 AIDSVHQL----------HYVHRDIKPDNILMD-MNGHIRLA 217
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Length = 1180
Score = 27.2 bits (60), Expect = 3.2
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 107 KLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+LD L S+ P L + M+K + L+ GR +
Sbjct: 1035 QLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYL 1078
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation,
cancer, PAN inhibitor, ATP-binding nucleotide-binding,
phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo
sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A*
Length = 318
Score = 26.9 bits (60), Expect = 3.3
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 8/35 (22%)
Query: 76 AKILKQLGHP--IKYQGFKIHNIVCTCDVRFPVKL 108
IL+ L H IKY+G C ++L
Sbjct: 84 IDILRTLYHEHIIKYKG------CCEDAGAASLQL 112
>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}
Length = 239
Score = 27.2 bits (59), Expect = 3.3
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 142 IFVNGRIVITGAKSRSELHEAFDNI 166
++ ++GA+ +A
Sbjct: 187 FVLDRAYGVSGAQPAEVFTQALTQA 211
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition,
allosteric inhibitor, kinase inhibitor hydrophobic
collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB:
3o96_A*
Length = 446
Score = 27.0 bits (60), Expect = 4.0
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 10/42 (23%)
Query: 110 ALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
AL ++HS+ ++YR +K ++L +G I IT
Sbjct: 260 ALDYLHSEK---------NVVYRDLKLENLML-DKDGHIKIT 291
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol
biosynthesis, oxidized vitamin E, lipid-binding,
transport, transcription regulation; HET: VTQ; 1.95A
{Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB:
1o6u_A* 1olm_E*
Length = 403
Score = 26.8 bits (59), Expect = 4.8
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 12/86 (13%)
Query: 79 LKQLGHPIKYQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRV 138
LK L P + + +P L L V + P+LFP + Y ++KP
Sbjct: 160 LKHLWKPAVEAYGEFLCMFEEN---YPETLKRLFVVKA------PKLFP-VAYNLIKP-- 207
Query: 139 VLLIFVNGRIVITGAKSRSELHEAFD 164
L +I++ GA + L +
Sbjct: 208 FLSEDTRKKIMVLGANWKEVLLKHIS 233
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase,
inhibitor, transf transferase inhibitor complex; HET:
0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A*
2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A*
2h9v_A*
Length = 410
Score = 26.6 bits (59), Expect = 5.7
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 11/42 (26%)
Query: 110 ALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
AL +HS G I+R VKP +LL +G + +
Sbjct: 180 ALDAIHSM----------GFIHRDVKPDNMLLD-KSGHLKLA 210
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase,
ATP-BI nucleotide-binding, cardiac contractility, muscle
different; HET: BI8; 2.80A {Homo sapiens}
Length = 412
Score = 26.2 bits (58), Expect = 6.3
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 10/32 (31%)
Query: 110 ALHHVHSQFSSYEPELFPGLIYRMVKPRVVLL 141
A+ VH G ++R +KP +LL
Sbjct: 174 AIDSVHRL----------GYVHRDIKPDNILL 195
>2zvi_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; methionine
salvage pathway, amino-acid biosynthesis, isomerase,
magnesium, metal- binding; 2.30A {Bacillus subtilis}
Length = 425
Score = 26.2 bits (57), Expect = 6.6
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 137 RVVLLIFVNGRIVITGAKSRSELHEAFD 164
R ++ + + + A+ +L A D
Sbjct: 390 RAIIDAVLEAQPIDEKAEQCKDLKLALD 417
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo
sapiens} PDB: 3a8w_A* 1zrz_A*
Length = 345
Score = 25.7 bits (57), Expect = 9.5
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 11/42 (26%)
Query: 110 ALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
AL+++H + G+IYR +K VLL G I +T
Sbjct: 122 ALNYLHER----------GIIYRDLKLDNVLL-DSEGHIKLT 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.142 0.434
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,737,368
Number of extensions: 154241
Number of successful extensions: 662
Number of sequences better than 10.0: 1
Number of HSP's gapped: 644
Number of HSP's successfully gapped: 57
Length of query: 176
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 89
Effective length of database: 4,272,666
Effective search space: 380267274
Effective search space used: 380267274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.6 bits)