RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2814
(176 letters)
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP),
C-terminal domain {Archaeon Sulfolobus acidocaldarius
[TaxId: 2285]}
Length = 101
Score = 114 bits (288), Expect = 2e-34
Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I NIV + ++ V LD + + YEPE FPGLIYRM +PRVVLLIF +G++VI
Sbjct: 8 IQIQNIVASANLHVIVNLDKAAF-LLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVI 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSFKKQ 176
TGAK E+H+A I+ L
Sbjct: 67 TGAKREDEVHKAVKKIFDKLVELDCV 92
Score = 96.0 bits (239), Expect = 5e-27
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V + ++ ++L++ + + Y P +F GLI ++ PR L F SGK++I GAK
Sbjct: 11 QNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAK 70
Query: 64 HEHDCKLASRKFAKILKQLG 83
E + A +K L +L
Sbjct: 71 REDEVHKAVKKIFDKLVELD 90
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP),
C-terminal domain {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 83
Score = 113 bits (285), Expect = 3e-34
Identities = 54/81 (66%), Positives = 69/81 (85%)
Query: 95 NIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVITGAK 154
NIV +CDV+FP++L+ L + H+ FSSYEPELFPGLIYRM P++VLLIFV+G+IVITGAK
Sbjct: 2 NIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAK 61
Query: 155 SRSELHEAFDNIYPVLKSFKK 175
R E ++AF+NIYPVL F+K
Sbjct: 62 MRDETYKAFENIYPVLSEFRK 82
Score = 84.8 bits (210), Expect = 8e-23
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 4 QNMVGTISVGCPLDLNQINSRVR-YSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGA 62
QN+VG+ V P+ L + +S Y P F GLI ++ P+ L F SGK++I GA
Sbjct: 1 QNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGA 60
Query: 63 KHEHDCKLASRKFAKILKQL 82
K + A +L +
Sbjct: 61 KMRDETYKAFENIYPVLSEF 80
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP),
C-terminal domain {Archaeon Pyrococcus woesei [TaxId:
2262]}
Length = 92
Score = 110 bits (278), Expect = 6e-33
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+I NIV + D+ + L+ + S Y PE FPG+I + P+V LLIF +G++V+
Sbjct: 9 LRIENIVASVDLFAQLDLEKVLD-LCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVV 67
Query: 151 TGAKSRSELHEAFDNIYPVLKS 172
TGAKS ++ A + LKS
Sbjct: 68 TGAKSVQDIERAVAKLAQKLKS 89
Score = 96.7 bits (241), Expect = 2e-27
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V ++ + LDL ++ S+YNP +F G+I + +P+ L F SGKL++ GAK
Sbjct: 12 ENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAK 71
Query: 64 HEHDCKLASRKFAKILKQLG 83
D + A K A+ LK +G
Sbjct: 72 SVQDIERAVAKLAQKLKSIG 91
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP),
C-terminal domain {Archaeon Pyrococcus woesei [TaxId:
2262]}
Length = 89
Score = 109 bits (274), Expect = 2e-32
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
+ N+V + D+ LD + YEPE FPG+IYR+ +P+ V+L+F +G+IV
Sbjct: 8 IDVQNMVFSGDIGREFNLDVVAL-TLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVC 66
Query: 151 TGAKSRSELHEAFDNIYPVLKSF 173
+GAKS ++ EA + L +
Sbjct: 67 SGAKSEADAWEAVRKLLRELDKY 89
Score = 93.3 bits (232), Expect = 4e-26
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QNMV + +G +L+ + + EY P +F G+I ++ P++ L F SGK++ GAK
Sbjct: 11 QNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAK 70
Query: 64 HEHDCKLASRKFAKILKQ 81
E D A RK + L +
Sbjct: 71 SEADAWEAVRKLLRELDK 88
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP),
C-terminal domain {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 99
Score = 107 bits (270), Expect = 1e-31
Identities = 43/90 (47%), Positives = 64/90 (71%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
QN+V T+++ C LDL I + R +EYNP +F +IM+I P+TT L F SGK++ GAK
Sbjct: 10 QNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 69
Query: 64 HEHDCKLASRKFAKILKQLGHPIKYQGFKI 93
E K+A+RK+A+I+++LG P K++ FKI
Sbjct: 70 SEDFSKMAARKYARIVQKLGFPAKFKDFKI 99
Score = 102 bits (256), Expect = 2e-29
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 92 KIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
+ NIV T ++ + L A+ + ++ + Y P+ F +I R+ +P+ LIF +G++V T
Sbjct: 8 TLQNIVSTVNLDCKLDLKAIA-LQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCT 66
Query: 152 GAKSRSELHEAFDNIYPVLK 171
GAKS A +++
Sbjct: 67 GAKSEDFSKMAARKYARIVQ 86
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP),
C-terminal domain {Archaeon Sulfolobus acidocaldarius
[TaxId: 2285]}
Length = 92
Score = 106 bits (267), Expect = 2e-31
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 91 FKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVI 150
I NIV T + + L A+ Y+P+ FPGLI+R+ P++ LIF +G++V+
Sbjct: 9 VNIENIVATVTLDQTLDLYAMER-SVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVV 67
Query: 151 TGAKSRSELHEAFDNIYPVLKSF 173
TGAKS EL +A I LK +
Sbjct: 68 TGAKSTDELIKAVKRIIKTLKKY 90
Score = 97.1 bits (242), Expect = 1e-27
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 4 QNMVGTISVGCPLDLNQINSRVRYSEYNPGKFHGLIMKILNPRTTCLAFQSGKLLILGAK 63
+N+V T+++ LDL + V EY+P +F GLI ++ +P+ T L F+SGK+++ GAK
Sbjct: 12 ENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAK 71
Query: 64 HEHDCKLASRKFAKILKQLG 83
+ A ++ K LK+ G
Sbjct: 72 STDELIKAVKRIIKTLKKYG 91
>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE)
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 144
Score = 25.5 bits (54), Expect = 2.6
Identities = 7/79 (8%), Positives = 20/79 (25%), Gaps = 2/79 (2%)
Query: 88 YQGFKIHNIVCTCDVRFPVKLDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGR 147
+ F++ I + + + + + + ++ G
Sbjct: 59 DKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFVVGREGT 118
Query: 148 IV--ITGAKSRSELHEAFD 164
IV + G + L
Sbjct: 119 IVYKLVGPITPDNLRSVLL 137
>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit
F (AhpF), N-terminal domain {Salmonella typhimurium
[TaxId: 90371]}
Length = 96
Score = 24.3 bits (52), Expect = 5.1
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 137 RVVLLIFVNGRIVITGAKSRSELHEAFD 164
V +FVNG+ G + +E+ D
Sbjct: 67 MGVPAVFVNGKEFGQGRMTLTEIVAKVD 94
>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 85
Score = 23.5 bits (50), Expect = 7.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 142 IFVNGRIVITGAKSRSELHEAFD 164
I +NG + GA SR EL EA +
Sbjct: 59 IAINGVVRFVGAPSREELFEAIN 81
>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein
kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 24.6 bits (53), Expect = 7.8
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 11/44 (25%)
Query: 108 LDALHHVHSQFSSYEPELFPGLIYRMVKPRVVLLIFVNGRIVIT 151
LDAL+++H +I+R +K +L ++G I +
Sbjct: 120 LDALNYLHDN----------KIIHRDLKAGNILF-TLDGDIKLA 152
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.142 0.434
Gapped
Lambda K H
0.267 0.0565 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 670,889
Number of extensions: 30210
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 26
Length of query: 176
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,322,926
Effective search space: 128323822
Effective search space used: 128323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.4 bits)