Query psy2816
Match_columns 83
No_of_seqs 138 out of 1023
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 17:40:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2816.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2816hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03402 Band_7_2 A subgroup of 99.9 6.2E-25 1.3E-29 146.3 9.0 81 1-83 16-97 (219)
2 PRK10930 FtsH protease regulat 99.9 1.9E-23 4.2E-28 149.8 9.6 82 1-83 111-192 (419)
3 cd03407 Band_7_4 A subgroup of 99.9 2.5E-23 5.3E-28 141.3 8.4 82 1-83 10-93 (262)
4 KOG2621|consensus 99.9 5E-23 1.1E-27 139.9 5.9 82 1-83 69-152 (288)
5 cd03403 Band_7_stomatin_like B 99.9 8E-22 1.7E-26 129.7 9.5 82 1-83 12-94 (215)
6 PRK11029 FtsH protease regulat 99.9 3.9E-22 8.5E-27 139.7 8.3 82 1-83 34-127 (334)
7 TIGR01933 hflK HflK protein. H 99.9 9E-22 1.9E-26 133.2 9.3 82 1-83 15-96 (261)
8 KOG2620|consensus 99.9 2.2E-23 4.8E-28 141.0 0.8 83 1-83 23-107 (301)
9 COG0330 HflC Membrane protease 99.8 2.5E-20 5.4E-25 127.6 9.6 83 1-83 35-122 (291)
10 TIGR01932 hflC HflC protein. H 99.8 2.9E-20 6.2E-25 129.4 8.7 81 1-82 34-126 (317)
11 cd03405 Band_7_HflC Band_7_Hfl 99.8 3.4E-20 7.4E-25 123.9 8.1 81 1-82 15-100 (242)
12 smart00244 PHB prohibitin homo 99.8 2E-19 4.3E-24 112.6 9.5 81 1-82 17-98 (160)
13 cd03404 Band_7_HflK Band_7_Hfl 99.8 8.2E-20 1.8E-24 123.8 7.6 83 1-83 29-123 (266)
14 PF01145 Band_7: SPFH domain / 99.6 2.1E-16 4.6E-21 100.3 3.7 82 1-83 14-101 (179)
15 cd03406 Band_7_3 A subgroup of 99.6 1.5E-14 3.3E-19 99.5 7.9 81 1-82 19-105 (280)
16 cd03401 Band_7_prohibitin Band 99.6 9.3E-15 2E-19 94.9 6.0 80 1-82 16-101 (196)
17 cd03399 Band_7_flotillin Band_ 99.0 2.7E-10 5.9E-15 69.8 4.0 42 26-67 2-43 (128)
18 cd03408 Band_7_5 A subgroup of 99.0 1.2E-09 2.6E-14 71.3 7.0 81 1-82 30-144 (207)
19 cd03400 Band_7_1 A subgroup of 98.1 2.3E-06 4.9E-11 52.0 2.7 36 27-63 4-39 (124)
20 cd02106 Band_7 The band 7 doma 98.1 1.6E-05 3.5E-10 46.7 6.3 54 27-80 3-58 (121)
21 COG2268 Uncharacterized protei 97.7 0.00014 3E-09 54.4 6.3 56 5-61 61-116 (548)
22 KOG2962|consensus 96.4 0.0063 1.4E-07 41.7 4.0 44 7-51 44-87 (322)
23 KOG3090|consensus 95.9 0.0099 2.1E-07 40.6 3.1 50 6-57 59-108 (290)
24 KOG2668|consensus 95.6 0.083 1.8E-06 38.2 7.0 50 7-59 22-71 (428)
25 KOG3083|consensus 94.1 0.037 8.1E-07 37.7 2.0 50 7-58 49-98 (271)
26 PF13421 Band_7_1: SPFH domain 84.6 8.6 0.00019 25.6 7.0 66 2-68 31-121 (211)
27 PF13605 DUF4141: Domain of un 80.4 1.3 2.7E-05 23.7 1.5 32 50-81 16-47 (55)
28 COG4260 Membrane protease subu 71.8 11 0.00023 27.0 4.5 53 15-68 89-148 (345)
29 PF07628 DUF1589: Protein of u 46.3 10 0.00022 24.1 0.8 14 4-18 82-95 (164)
30 PRK11118 putative monooxygenas 43.0 13 0.00027 22.3 0.8 11 8-18 32-42 (100)
31 PF12991 DUF3875: Domain of un 41.3 49 0.0011 17.6 2.8 33 35-72 18-50 (54)
32 COG0806 RimM RimM protein, req 33.3 31 0.00067 22.5 1.6 24 13-36 144-167 (174)
33 PF08670 MEKHLA: MEKHLA domain 29.2 93 0.002 19.7 3.2 24 39-62 109-132 (148)
34 PF05608 DUF778: Protein of un 28.3 1.6E+02 0.0034 18.5 4.7 68 10-80 2-88 (136)
35 PF05282 AAR2: AAR2 protein; 28.0 38 0.00081 24.2 1.4 13 4-16 30-44 (362)
36 TIGR02572 LcrR type III secret 27.7 72 0.0016 20.2 2.4 17 67-83 61-77 (139)
37 PTZ00491 major vault protein; 25.8 1.5E+02 0.0032 24.3 4.4 32 39-70 533-570 (850)
38 PF08803 ydhR: Putative mono-o 25.1 36 0.00078 20.2 0.8 11 8-18 29-39 (97)
39 KOG2304|consensus 23.0 31 0.00067 24.1 0.2 18 8-25 149-167 (298)
40 PF12791 RsgI_N: Anti-sigma fa 22.8 77 0.0017 16.1 1.7 21 39-59 9-29 (56)
41 PF14249 Tocopherol_cycl: Toco 21.3 45 0.00098 24.0 0.8 10 52-61 21-30 (336)
42 PF13123 DUF3978: Protein of u 20.9 1.4E+02 0.003 18.8 2.8 31 9-39 76-106 (145)
43 KOG2738|consensus 20.8 1.8E+02 0.0038 21.2 3.6 39 42-81 197-237 (369)
44 PF08111 Pea-VEAacid: Pea-VEAa 20.7 40 0.00088 12.9 0.3 8 7-14 2-9 (15)
No 1
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.92 E-value=6.2e-25 Score=146.35 Aligned_cols=81 Identities=21% Similarity=0.338 Sum_probs=76.2
Q ss_pred CCceeeee-CCccEEEcCceeEEEEEeeeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEeChhhccccCCChHHHHHHHH
Q psy2816 1 MGKYHRIL-EPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLA 79 (83)
Q Consensus 1 fGk~~~~~-~pGlh~~~P~~~~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~d~~~~~~~v~~~~~~~~~~a 79 (83)
||||.++. +||+||++||+++ .++ |+|.++++.++++++|+|+++++|+++++|||.||.+|+|+++|+...+...+
T Consensus 16 fGk~~~t~~~pGL~~~~P~~~~-~~v-d~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~Dp~ka~~~v~~~~~~l~~~~ 93 (219)
T cd03402 16 FGRYIGTIRRTGLRWVNPFSSK-KRV-SLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVDTAKAVFNVDDYEEFVHIQS 93 (219)
T ss_pred cCcCcccccCCceEEEeccceE-EEE-eeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcCHHHHHHHcCCHHHHHHHHH
Confidence 89999885 9999999999975 555 99999999999999999999999999999999999999999999999999999
Q ss_pred HhcC
Q psy2816 80 QTTM 83 (83)
Q Consensus 80 qs~l 83 (83)
+++|
T Consensus 94 ~sal 97 (219)
T cd03402 94 ESAL 97 (219)
T ss_pred HHHH
Confidence 9875
No 2
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=99.90 E-value=1.9e-23 Score=149.76 Aligned_cols=82 Identities=23% Similarity=0.427 Sum_probs=76.9
Q ss_pred CCceeeeeCCccEEEcCceeEEEEEeeeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEeChhhccccCCChHHHHHHHHH
Q psy2816 1 MGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQ 80 (83)
Q Consensus 1 fGk~~~~~~pGlh~~~P~~~~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~d~~~~~~~v~~~~~~~~~~aq 80 (83)
||||+++++||+||++||++++..+ +++.+....++++|+|+|++.|+|+++|+|||.||.+|+|++.+++.+++++++
T Consensus 111 FGk~~~~l~PGLhfk~PfId~V~~v-dv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~Dp~~~lf~v~~~~~~L~~~~~ 189 (419)
T PRK10930 111 FGKFSHLVEPGLNWKPTFIDEVKPV-NVEAVRELAASGVMLTSDENVVRVEMNVQYRVTDPEKYLFSVTSPDDSLRQATD 189 (419)
T ss_pred CCcCcceeCCceEEecCceEEEEEE-EeEEEEEccCcceeECCCCCEEEEEEEEEEEECCHHHHHHhccCHHHHHHHHHH
Confidence 8999999999999999999999987 888776666778999999999999999999999999999999999999999999
Q ss_pred hcC
Q psy2816 81 TTM 83 (83)
Q Consensus 81 s~l 83 (83)
++|
T Consensus 190 SAl 192 (419)
T PRK10930 190 SAL 192 (419)
T ss_pred HHH
Confidence 985
No 3
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.89 E-value=2.5e-23 Score=141.28 Aligned_cols=82 Identities=24% Similarity=0.438 Sum_probs=76.2
Q ss_pred CCceeeeeCCccEEEcCceeEEEEEeeeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEeChh--hccccCCChHHHHHHH
Q psy2816 1 MGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPY--LASYGVEDPEFAITQL 78 (83)
Q Consensus 1 fGk~~~~~~pGlh~~~P~~~~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~d~~--~~~~~v~~~~~~~~~~ 78 (83)
||||+++++||+||++||++++...+++|.++++++. +++|+|++.|.|+++++|||.||. +++|++.++..++.++
T Consensus 10 fGk~~~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~-~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~~~~~~l~~~ 88 (262)
T cd03407 10 FGKFFKVAWPGCHFVIPLVETVAGRLSLRVQQLDVRV-ETKTKDNVFVTVVGQIQYRVSEENATDAFYKLGNPEEQIQSY 88 (262)
T ss_pred cCcccccCCCCeEEEeccccceeeEEeeeEEEecCCC-ceEcCCCCEEEEEEEEEEEECCcHHHHHHHHcCCHHHHHHHH
Confidence 8999999999999999999998644599999999985 689999999999999999999998 9999999999999999
Q ss_pred HHhcC
Q psy2816 79 AQTTM 83 (83)
Q Consensus 79 aqs~l 83 (83)
++++|
T Consensus 89 ~~s~l 93 (262)
T cd03407 89 VFDVL 93 (262)
T ss_pred HHHHH
Confidence 99875
No 4
>KOG2621|consensus
Probab=99.88 E-value=5e-23 Score=139.94 Aligned_cols=82 Identities=40% Similarity=0.667 Sum_probs=78.1
Q ss_pred CCceee--eeCCccEEEcCceeEEEEEeeeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEeChhhccccCCChHHHHHHH
Q psy2816 1 MGKYHR--ILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQL 78 (83)
Q Consensus 1 fGk~~~--~~~pGlh~~~P~~~~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~d~~~~~~~v~~~~~~~~~~ 78 (83)
+||... ..+||+.|.+||+|+..++ |+|++++++|+|+++|||.+.++||++|||||.||..++.+++|...+.+.+
T Consensus 69 LGRl~~~~~rGPGi~fvlPCIDt~~kV-DLRt~sfnVPpqeIltkDsvtvsVdAvVyyri~dpi~sv~~V~Da~~sTr~l 147 (288)
T KOG2621|consen 69 LGRLRTGGARGPGLFFLLPCIDTFRKV-DLRTQSFNVPPQEILTKDSVTISVDAVVYYRISDPIIAVNNVGDADNATRLL 147 (288)
T ss_pred eeeccccCCCCCCeEEEecccceeeee-eeeEEeecCCHHHHhcccceEEEeceEEEEEecCHHHHHHhccCHHHHHHHH
Confidence 477765 6799999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhcC
Q psy2816 79 AQTTM 83 (83)
Q Consensus 79 aqs~l 83 (83)
||++|
T Consensus 148 AqttL 152 (288)
T KOG2621|consen 148 AQTTL 152 (288)
T ss_pred HHHHH
Confidence 99985
No 5
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=99.87 E-value=8e-22 Score=129.71 Aligned_cols=82 Identities=57% Similarity=0.937 Sum_probs=77.5
Q ss_pred CCceeeeeCCccEEEcCceeEE-EEEeeeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEeChhhccccCCChHHHHHHHH
Q psy2816 1 MGKYHRILEPGLNILIPIIDKI-KYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLA 79 (83)
Q Consensus 1 fGk~~~~~~pGlh~~~P~~~~v-~~v~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~d~~~~~~~v~~~~~~~~~~a 79 (83)
||++.++++||+||++||++++ ..+ |+|.+.++++.++++|+|++.+.+++++.|||.||.++++.++|+...+....
T Consensus 12 ~G~~~~~~~pG~~f~~P~~~~v~~~v-~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~ 90 (215)
T cd03403 12 LGKYHRTLGPGLHFIIPFIDRIAYKV-DLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVDPVKAVYGVEDYRYAISQLA 90 (215)
T ss_pred cCcCccccCCcEEEEeccceEEEEEE-eeEEEEEccCCceeEcCCCCEEEEEEEEEEEEecHHHHHhcCCCHHHHHHHHH
Confidence 7999999999999999999999 776 99999999999999999999999999999999999999999999999999988
Q ss_pred HhcC
Q psy2816 80 QTTM 83 (83)
Q Consensus 80 qs~l 83 (83)
+++|
T Consensus 91 ~~~l 94 (215)
T cd03403 91 QTTL 94 (215)
T ss_pred HHHH
Confidence 8764
No 6
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=99.87 E-value=3.9e-22 Score=139.72 Aligned_cols=82 Identities=21% Similarity=0.341 Sum_probs=70.5
Q ss_pred CCceee-------eeCCccEEEcCceeEEEEEeeeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEeChhhccccC--CCh
Q psy2816 1 MGKYHR-------ILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGV--EDP 71 (83)
Q Consensus 1 fGk~~~-------~~~pGlh~~~P~~~~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~d~~~~~~~v--~~~ 71 (83)
|||+.+ +++||+||++||++++.++ |+|.+.++.++++++|+|++.|.||++|+|||.||.+|+++. .|+
T Consensus 34 FGk~~~~~~~~~~~l~PGLhf~iPfid~V~~v-dvR~q~~d~~~~~vlT~D~~~V~VD~~V~yrI~Dp~~~~~~~~~~n~ 112 (334)
T PRK11029 34 FGKVLRDDDNKPLVYAPGLHFKIPFIETVKML-DARIQTMDNQADRFVTKEKKDLIVDSYIKWRISDFSRYYLATGGGDI 112 (334)
T ss_pred CCceeccccccccccCCceEEEcCCceEEEEE-eeEEEEeeCCCceEEcCCCCEEEEEEEEEEEECCHHHHHHHhcCCcH
Confidence 899987 4899999999999999987 999999999999999999999999999999999999998864 234
Q ss_pred H---HHHHHHHHhcC
Q psy2816 72 E---FAITQLAQTTM 83 (83)
Q Consensus 72 ~---~~~~~~aqs~l 83 (83)
. ..++..++++|
T Consensus 113 ~~a~~~l~~~v~sal 127 (334)
T PRK11029 113 SQAEVLLKRKFSDRL 127 (334)
T ss_pred HHHHHHHHHHHHHHH
Confidence 3 44555555553
No 7
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=99.87 E-value=9e-22 Score=133.16 Aligned_cols=82 Identities=29% Similarity=0.518 Sum_probs=73.1
Q ss_pred CCceeeeeCCccEEEcCceeEEEEEeeeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEeChhhccccCCChHHHHHHHHH
Q psy2816 1 MGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQ 80 (83)
Q Consensus 1 fGk~~~~~~pGlh~~~P~~~~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~d~~~~~~~v~~~~~~~~~~aq 80 (83)
|||+.++++||+||++||++++..+ ++|.+....+...++|+|++.|.|+++++|||.||.+|++++.++...+.+.++
T Consensus 15 fGk~~~~l~pGl~~~~P~i~~v~~~-~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d~~~~~~~~~~~~~~l~~~~~ 93 (261)
T TIGR01933 15 FGKYHRTVDPGLNWKPPFIEEVYPV-NVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITDPYKYLFSVENPEDSLRQATD 93 (261)
T ss_pred cCccccccCCcceEECCCceEEEEe-eeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECCHHHHHHhCCCHHHHHHHHHH
Confidence 8999999999999999999999887 887644333445799999999999999999999999999999999999999998
Q ss_pred hcC
Q psy2816 81 TTM 83 (83)
Q Consensus 81 s~l 83 (83)
++|
T Consensus 94 s~l 96 (261)
T TIGR01933 94 SAL 96 (261)
T ss_pred HHH
Confidence 864
No 8
>KOG2620|consensus
Probab=99.87 E-value=2.2e-23 Score=140.96 Aligned_cols=83 Identities=71% Similarity=1.097 Sum_probs=78.6
Q ss_pred CCceeeeeCCccEEEcCceeEEEEEeeeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEeChhh--ccccCCChHHHHHHH
Q psy2816 1 MGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYL--ASYGVEDPEFAITQL 78 (83)
Q Consensus 1 fGk~~~~~~pGlh~~~P~~~~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~d~~~--~~~~v~~~~~~~~~~ 78 (83)
||||+++|+||+||..|+++++..+.+++......+.|+.+||||++|.+++++||||.||.+ +.|.++||..++.++
T Consensus 23 ~GkF~~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv~dp~~~dAsYgvenp~~aI~ql 102 (301)
T KOG2620|consen 23 FGKFHRILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRVVDPYADDASYGVENPEYAIQQL 102 (301)
T ss_pred hhhhhhhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEEecccccccccccCCHHHHHHHH
Confidence 899999999999999999999988767777788888999999999999999999999999999 999999999999999
Q ss_pred HHhcC
Q psy2816 79 AQTTM 83 (83)
Q Consensus 79 aqs~l 83 (83)
+|++|
T Consensus 103 aqttm 107 (301)
T KOG2620|consen 103 AQTTM 107 (301)
T ss_pred HHHHH
Confidence 99976
No 9
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.5e-20 Score=127.57 Aligned_cols=83 Identities=42% Similarity=0.723 Sum_probs=76.0
Q ss_pred CCceeeeeC-CccEEEcCc---eeEEEEEeeeEEEEEcC-CCceeeeCCCcEEEEeEEEEEEEeChhhccccCCChHHHH
Q psy2816 1 MGKYHRILE-PGLNILIPI---IDKIKYVQSLKEIAIDV-PQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAI 75 (83)
Q Consensus 1 fGk~~~~~~-pGlh~~~P~---~~~v~~v~~~r~~~~~~-~~~~v~TkD~~~v~v~~~v~y~I~d~~~~~~~v~~~~~~~ 75 (83)
||++.++++ ||+||++|| ++......+.|.++++. +++.++|+|++.|.||++++|||.||.++++++.+++.++
T Consensus 35 ~G~~~~~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~V~vd~~v~~rv~d~~~~~~~v~~~~~~l 114 (291)
T COG0330 35 FGRYTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQYRVTDPQKAVYNVENAEAAL 114 (291)
T ss_pred ecceeeecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCEEEEEEEEEEEEcCHHHHHHhcCCHHHHH
Confidence 799999998 999999999 45553334899999999 8999999999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q psy2816 76 TQLAQTTM 83 (83)
Q Consensus 76 ~~~aqs~l 83 (83)
.++++++|
T Consensus 115 ~~~~~~~l 122 (291)
T COG0330 115 RQLVQSAL 122 (291)
T ss_pred HHHHHHHH
Confidence 99999875
No 10
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=99.83 E-value=2.9e-20 Score=129.43 Aligned_cols=81 Identities=23% Similarity=0.274 Sum_probs=71.0
Q ss_pred CCceeeee-------CCccEEEcCceeEEEEEeeeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEeChhhccccCC--Ch
Q psy2816 1 MGKYHRIL-------EPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVE--DP 71 (83)
Q Consensus 1 fGk~~~~~-------~pGlh~~~P~~~~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~d~~~~~~~v~--~~ 71 (83)
|||+.++. +||+||++||++++..+ |+|.+.++.++++++|+|+++|.|+++++|||.||.++++++. +.
T Consensus 34 fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~v-d~r~q~~~~~~~~vlTkD~~~V~Vd~~V~yrV~d~~~~~~~~~~~~~ 112 (317)
T TIGR01932 34 FGKILKDNNHHVLVYEPGLHFKIPFIEHVKIF-DAKIQTMDGRPDRIPTKEKKDIIIDTYIRWRIEDFKKYYLSTGGGTI 112 (317)
T ss_pred cCceeccccccccccCCCeEEEeccccEEEEe-eeeEEEecCCcceeECCCCCEEEEEEEEEEEECCHHHHHHHhcCCCH
Confidence 79998765 79999999999999887 9999999999999999999999999999999999999999876 43
Q ss_pred ---HHHHHHHHHhc
Q psy2816 72 ---EFAITQLAQTT 82 (83)
Q Consensus 72 ---~~~~~~~aqs~ 82 (83)
+..++..++++
T Consensus 113 ~~~~~~l~~~~~~~ 126 (317)
T TIGR01932 113 SAAEVLIKRKIDDR 126 (317)
T ss_pred HHHHHHHHHHHHHH
Confidence 44566666654
No 11
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=99.82 E-value=3.4e-20 Score=123.90 Aligned_cols=81 Identities=26% Similarity=0.443 Sum_probs=71.4
Q ss_pred CCceee-eeCCccEEEcCceeEEEEEeeeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEeChhhccccCCChH----HHH
Q psy2816 1 MGKYHR-ILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPE----FAI 75 (83)
Q Consensus 1 fGk~~~-~~~pGlh~~~P~~~~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~d~~~~~~~v~~~~----~~~ 75 (83)
|||+.+ +++||+||++||++++..+ |+|.+.++.++++++|+|++.+.+++++.|||.||.++++++.++. ..+
T Consensus 15 ~Gk~~~~~~~pG~~~~~P~i~~v~~v-~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~~~i 93 (242)
T cd03405 15 FGEVVRVVTEPGLHFKLPFIQQVKKF-DKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITDPLRFYQAVGGEERAAETRL 93 (242)
T ss_pred cCccccccCCCCeeEEcCCcceEEEE-cCEEEeccCCcceEEccCCcEEEEEEEEEEEEcCHHHHHHHhcChHHHHHHHH
Confidence 799987 5899999999999998887 9999999998899999999999999999999999999999887764 455
Q ss_pred HHHHHhc
Q psy2816 76 TQLAQTT 82 (83)
Q Consensus 76 ~~~aqs~ 82 (83)
.+..+++
T Consensus 94 ~~~~~~~ 100 (242)
T cd03405 94 DQIVNSA 100 (242)
T ss_pred HHHHHHH
Confidence 5555544
No 12
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.81 E-value=2e-19 Score=112.63 Aligned_cols=81 Identities=49% Similarity=0.772 Sum_probs=74.3
Q ss_pred CCceeeeeCCccEEEcCceeEEEEEeeeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEeChhhccccCCChH-HHHHHHH
Q psy2816 1 MGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPE-FAITQLA 79 (83)
Q Consensus 1 fGk~~~~~~pGlh~~~P~~~~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~d~~~~~~~v~~~~-~~~~~~a 79 (83)
||++.++++||+||++||++++..+ ++|.++++...+.+.|+|+..+.+++.+.|||.||.++++++.+++ ..++...
T Consensus 17 ~G~~~~~~~pG~~~~~P~~~~~~~~-~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d~~~~~~~~~~~~~~~l~~~i 95 (160)
T smart00244 17 LGRVLRVLGPGLHFLIPFIDRVKKV-DLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLDPLKAVYRVLDADYAVIEQLA 95 (160)
T ss_pred cCccccccCCCEEEEecceeEEEEE-eeEEEeecCCceEEEecCCcEEEEeEEEEEEEccHHHHhhhcCCHHHHHHHHHH
Confidence 7999999999999999999999887 9999999998889999999999999999999999999999998887 4777777
Q ss_pred Hhc
Q psy2816 80 QTT 82 (83)
Q Consensus 80 qs~ 82 (83)
+++
T Consensus 96 ~~~ 98 (160)
T smart00244 96 QTT 98 (160)
T ss_pred HHH
Confidence 665
No 13
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=99.81 E-value=8.2e-20 Score=123.78 Aligned_cols=83 Identities=28% Similarity=0.440 Sum_probs=69.7
Q ss_pred CCceeeeeCCccEEEcCceeEEEEEeeeEE------------EEEcCCCceeeeCCCcEEEEeEEEEEEEeChhhccccC
Q psy2816 1 MGKYHRILEPGLNILIPIIDKIKYVQSLKE------------IAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGV 68 (83)
Q Consensus 1 fGk~~~~~~pGlh~~~P~~~~v~~v~~~r~------------~~~~~~~~~v~TkD~~~v~v~~~v~y~I~d~~~~~~~v 68 (83)
|||++++++||+||++||++++..+.+++. .....+++.++|+|++.|.++++++|||.||.++++++
T Consensus 29 fGk~~~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d~~~~~~~~ 108 (266)
T cd03404 29 FGKYSRTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDENIVDVEFAVQYRISDPYDYLFNV 108 (266)
T ss_pred cCccccccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccceEeCCCCEEEEEEEEEEEECCHHHHHhhC
Confidence 899999999999999999988765534432 11222346799999999999999999999999999999
Q ss_pred CChHHHHHHHHHhcC
Q psy2816 69 EDPEFAITQLAQTTM 83 (83)
Q Consensus 69 ~~~~~~~~~~aqs~l 83 (83)
.+++..+.+.++++|
T Consensus 109 ~~~~~~l~~~~~~~l 123 (266)
T cd03404 109 RDPEGTLRQAAESAM 123 (266)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998864
No 14
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.63 E-value=2.1e-16 Score=100.29 Aligned_cols=82 Identities=28% Similarity=0.488 Sum_probs=50.6
Q ss_pred CCceeeeeCCccEEEcCceeEEEEEeeeEEEEEcCCC--ceeeeCCCcEEEEeEEEEEEEeChhhccccC----CChHHH
Q psy2816 1 MGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQ--QSAITSDNVTLSIDGVLYLKINDPYLASYGV----EDPEFA 74 (83)
Q Consensus 1 fGk~~~~~~pGlh~~~P~~~~v~~v~~~r~~~~~~~~--~~v~TkD~~~v~v~~~v~y~I~d~~~~~~~v----~~~~~~ 74 (83)
||++..+++||+||++||++++..+ +++.+++++.. ..+.|+|+..+.+++.+.|||.||.+++.+. +++...
T Consensus 14 ~G~~~~~~~~G~~~~~P~~~~~~~~-~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~ 92 (179)
T PF01145_consen 14 FGKVKDVLGPGLHFVIPFIQKVYVY-PTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIEDPPKFVQNYEGGEEDPENL 92 (179)
T ss_dssp ------------------EEE--S---SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES-CCCCCCCCSS-HCHHHHH
T ss_pred CCeEeEEECCCeEEEeCCcCeEEEE-eCEEEecccchhhhhhhhcccceeeeeEEEEEEechHHHHHHhhhcchhhhhhh
Confidence 6899999999999999999999876 99999999987 7999999999999999999999999999998 788888
Q ss_pred HHHHHHhcC
Q psy2816 75 ITQLAQTTM 83 (83)
Q Consensus 75 ~~~~aqs~l 83 (83)
++..+++++
T Consensus 93 l~~~~~~~~ 101 (179)
T PF01145_consen 93 LRQIVESAL 101 (179)
T ss_dssp HHHHHHHHH
T ss_pred hhhhhhhhh
Confidence 888887653
No 15
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.56 E-value=1.5e-14 Score=99.54 Aligned_cols=81 Identities=17% Similarity=0.148 Sum_probs=64.8
Q ss_pred CCcee-eeeCCccEEEcCceeEEEEEeeeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEeChhhcccc-----CCChHHH
Q psy2816 1 MGKYH-RILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYG-----VEDPEFA 74 (83)
Q Consensus 1 fGk~~-~~~~pGlh~~~P~~~~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~d~~~~~~~-----v~~~~~~ 74 (83)
|||+. .+++||+||++||++++..+ ++|.++.+.+...+.|+|+..|.+|....|.+.||.+++-. +++....
T Consensus 19 fGkv~~~~l~PGLHfkiPfId~V~~v-~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp~~~~~~~~~y~~~~~~~~ 97 (280)
T cd03406 19 GGALLTSTSGPGFHLMLPFITTYKSV-QVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIPDSVYDIVKNYTADYDKTL 97 (280)
T ss_pred CCcccccccCCceEEecCCceEEEEE-EeEEEEeccCCcccccCCCcEEEEEEEEEEEecCHHHHHHHHHHHhHhhHHHH
Confidence 89986 47899999999999999886 89999998877889999999999998777777899875543 3445555
Q ss_pred HHHHHHhc
Q psy2816 75 ITQLAQTT 82 (83)
Q Consensus 75 ~~~~aqs~ 82 (83)
+.....++
T Consensus 98 I~~~Vrsa 105 (280)
T cd03406 98 IFNKIHHE 105 (280)
T ss_pred HHHHHHHH
Confidence 55555443
No 16
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=99.55 E-value=9.3e-15 Score=94.94 Aligned_cols=80 Identities=14% Similarity=0.156 Sum_probs=60.1
Q ss_pred CCceee--eeCCccEEEcCceeEEEEEeeeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEeC--hhhccccC-CC-hHHH
Q psy2816 1 MGKYHR--ILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKIND--PYLASYGV-ED-PEFA 74 (83)
Q Consensus 1 fGk~~~--~~~pGlh~~~P~~~~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~d--~~~~~~~v-~~-~~~~ 74 (83)
||+..+ +++||+||++||++++..+ |+|.+.+++. ..+.|+|++.|++++.++|++.+ +..++... .+ .+..
T Consensus 16 ~g~~~~~~~~~pG~h~~~P~~~~v~~~-~~r~~~~~~~-~~~~t~d~~~V~v~~~v~y~v~~~~~~~~~~~~~~~~~~~~ 93 (196)
T cd03401 16 RGGGVKDLVYGEGLHFRIPWFQKPIIF-DVRARPRNIE-STTGSKDLQMVNITLRVLFRPDASQLPRIYQNLGEDYDERV 93 (196)
T ss_pred ecCccccCccCCceEEEccccceeEEE-EeeeeEEEEe-ecccCCCCeEEEEEEEEEEEeCHHHHHHHHHHhCcchHhhh
Confidence 677654 8999999999999999887 9999998875 57889999999999999999952 22222222 23 3445
Q ss_pred HHHHHHhc
Q psy2816 75 ITQLAQTT 82 (83)
Q Consensus 75 ~~~~aqs~ 82 (83)
+...++++
T Consensus 94 i~~~v~~~ 101 (196)
T cd03401 94 LPSIINEV 101 (196)
T ss_pred hcHHHHHH
Confidence 66666654
No 17
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.04 E-value=2.7e-10 Score=69.84 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=38.6
Q ss_pred eeeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEeChhhcccc
Q psy2816 26 QSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYG 67 (83)
Q Consensus 26 ~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~d~~~~~~~ 67 (83)
.++|.+.+++++++++|+|++.+.|+++++|||.||.+++.+
T Consensus 2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~ 43 (128)
T cd03399 2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIAT 43 (128)
T ss_pred ccccceeeeccccceecCCCcEEEEEEEEEEEeCCCHHHHHH
Confidence 378999999999999999999999999999999999977644
No 18
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.03 E-value=1.2e-09 Score=71.32 Aligned_cols=81 Identities=21% Similarity=0.293 Sum_probs=57.9
Q ss_pred CCceeeeeCCccEEEc----Ccee---------------EEEEEeeeEEEEEcC--CC----ceeeeCCCcEEEEeEEEE
Q psy2816 1 MGKYHRILEPGLNILI----PIID---------------KIKYVQSLKEIAIDV--PQ----QSAITSDNVTLSIDGVLY 55 (83)
Q Consensus 1 fGk~~~~~~pGlh~~~----P~~~---------------~v~~v~~~r~~~~~~--~~----~~v~TkD~~~v~v~~~v~ 55 (83)
+||+.++++||.|+.+ |++. .+..+ +.|.+.... .+ .+..|+|++++.+++++.
T Consensus 30 ~Gk~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~ 108 (207)
T cd03408 30 EGKVADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFF-NTRVFTDLLWGTPAPVFGRDSEFGGVPLRAFGTYS 108 (207)
T ss_pred CCEEEEEecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEE-ECEEEeccccCCCCCeeeeCCccceEEEEeeEEEE
Confidence 6999999988887655 4443 35554 777766532 11 234678889999999999
Q ss_pred EEEeChhhccccCC---------ChHHHHHHHHHhc
Q psy2816 56 LKINDPYLASYGVE---------DPEFAITQLAQTT 82 (83)
Q Consensus 56 y~I~d~~~~~~~v~---------~~~~~~~~~aqs~ 82 (83)
|||.||.+++.++. +....++...+++
T Consensus 109 ~kI~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 144 (207)
T cd03408 109 LKVTDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAA 144 (207)
T ss_pred EEEcCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHH
Confidence 99999999997773 3455666666654
No 19
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=98.11 E-value=2.3e-06 Score=52.02 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=30.6
Q ss_pred eeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEeChhh
Q psy2816 27 SLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYL 63 (83)
Q Consensus 27 ~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~d~~~ 63 (83)
++|.++.+. +.+++|+|+..+.++++++|||.++..
T Consensus 4 ~~r~~~~~~-~~~v~T~D~~~v~vd~~v~y~V~~~~~ 39 (124)
T cd03400 4 STRLQEVDE-KIDVLSKEGLSINADVSVQYRINPNKA 39 (124)
T ss_pred cceeeeccc-ceEEECCCCCEEEEEEEEEEEEChhhH
Confidence 678887775 478999999999999999999965553
No 20
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=98.11 E-value=1.6e-05 Score=46.73 Aligned_cols=54 Identities=44% Similarity=0.693 Sum_probs=42.0
Q ss_pred eeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEeChhhccccCCChH--HHHHHHHH
Q psy2816 27 SLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPE--FAITQLAQ 80 (83)
Q Consensus 27 ~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~d~~~~~~~v~~~~--~~~~~~aq 80 (83)
+.+..+.+.+...++|+|+..+++++++.|+|.||..++++..... ..+.....
T Consensus 3 ~~~~~~~~~~~~~~~t~d~~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~ 58 (121)
T cd02106 3 DLRRQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPVKALYNVRDPEDEEALRQLAQ 58 (121)
T ss_pred cceeEEecCCCceEEecCCCEEEEEEEEEEEEeCHHHHHHhcCCccHHHHHHHHHH
Confidence 4556677778889999999999999999999999997777765554 44444433
No 21
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.68 E-value=0.00014 Score=54.37 Aligned_cols=56 Identities=30% Similarity=0.588 Sum_probs=50.7
Q ss_pred eeeeCCccEEEcCceeEEEEEeeeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEeCh
Q psy2816 5 HRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDP 61 (83)
Q Consensus 5 ~~~~~pGlh~~~P~~~~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~d~ 61 (83)
.+++-+|.||.+|+++...++ +++...+++....++|+||.++.+++..+-+|.|-
T Consensus 61 ~~vV~gGg~~v~Pi~q~~~r~-~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~v~i~~~ 116 (548)
T COG2268 61 QKVVRGGGAIVMPIFQTIERM-SLTTIKLEVEIDNVYTKDGMPLNVEAVAYVKIGDT 116 (548)
T ss_pred ccEEecCceEEecceeeeEEe-eeeeeeeeeeeeeeEecCCCccceeEEEEEEecCC
Confidence 357899999999999999997 99999999987889999999999999999999863
No 22
>KOG2962|consensus
Probab=96.35 E-value=0.0063 Score=41.73 Aligned_cols=44 Identities=27% Similarity=0.407 Sum_probs=34.9
Q ss_pred eeCCccEEEcCceeEEEEEeeeEEEEEcCCCceeeeCCCcEEEEe
Q psy2816 7 ILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSID 51 (83)
Q Consensus 7 ~~~pGlh~~~P~~~~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v~ 51 (83)
+.+||+|..+||+-++..+ .+-.|+=++....|=|+.|+.+..|
T Consensus 44 ~t~PG~Hl~lPFiTt~ksV-QvTLQTDev~nvPCGTsGGVlIyfd 87 (322)
T KOG2962|consen 44 ITGPGFHLMLPFITTYKSV-QVTLQTDEVKNVPCGTSGGVLIYFD 87 (322)
T ss_pred cCCCCcEEEeeeeeceeee-EEEeeccccccCCCCCCCcEEEEEe
Confidence 4699999999999887766 5666776676677889999887655
No 23
>KOG3090|consensus
Probab=95.85 E-value=0.0099 Score=40.56 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=40.8
Q ss_pred eeeCCccEEEcCceeEEEEEeeeEEEEEcCCCceeeeCCCcEEEEeEEEEEE
Q psy2816 6 RILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLK 57 (83)
Q Consensus 6 ~~~~pGlh~~~P~~~~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~ 57 (83)
++...|.||.+||+++-... |+|.+...+. ...=|||-+.|.+..-|--|
T Consensus 59 ~iy~EGtHf~iPwfe~pIiY-DvRarP~~i~-S~tGskDLQmVnI~lRVLsR 108 (290)
T KOG3090|consen 59 DIYPEGTHFRIPWFERPIIY-DVRARPRLIS-SPTGSKDLQMVNIGLRVLSR 108 (290)
T ss_pred ccccCCceEeeeccccceee-eeccCccccc-CCCCCcceeEEEeeeEEecC
Confidence 45789999999999998887 8998887775 35668899999888877555
No 24
>KOG2668|consensus
Probab=95.60 E-value=0.083 Score=38.16 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=41.9
Q ss_pred eeCCccEEEcCceeEEEEEeeeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEe
Q psy2816 7 ILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKIN 59 (83)
Q Consensus 7 ~~~pGlh~~~P~~~~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~ 59 (83)
.+-+| .|.+|| +++.++ |+...++.+.-+.+.|+.++++.|.++.+-+|.
T Consensus 22 ~lv~~-~wvf~w-q~~q~~-~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~ 71 (428)
T KOG2668|consen 22 KLVKK-SWVFPW-QQCTVF-DVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIR 71 (428)
T ss_pred eeccc-ceeeee-eeeeEE-eecceeeeeecchhhcccCCceEeeeeEEEeec
Confidence 34555 678888 788886 999999998877899999999999999888875
No 25
>KOG3083|consensus
Probab=94.09 E-value=0.037 Score=37.73 Aligned_cols=50 Identities=18% Similarity=0.253 Sum_probs=41.5
Q ss_pred eeCCccEEEcCceeEEEEEeeeEEEEEcCCCceeeeCCCcEEEEeEEEEEEE
Q psy2816 7 ILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKI 58 (83)
Q Consensus 7 ~~~pGlh~~~P~~~~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I 58 (83)
+.+.|-||.+||.++.... |.|.+...++ ...=|||-..|.+...+.+|=
T Consensus 49 vvgegthflipw~qk~~i~-d~rs~p~~v~-~itGskdLQ~VniTlril~rp 98 (271)
T KOG3083|consen 49 VVGEGTHFLIPWVQKPIIF-DCRSRPRNVP-VITGSKDLQNVNITLRILFRP 98 (271)
T ss_pred cccCCceeeeeeccCcEEE-eccCCCcccc-cccCchhhhcccceEEEEecc
Confidence 5799999999999998876 8998887775 456788999998888887773
No 26
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=84.56 E-value=8.6 Score=25.62 Aligned_cols=66 Identities=27% Similarity=0.403 Sum_probs=39.8
Q ss_pred CceeeeeCCccEEE-------------------cCceeEEEEEeeeEEEE---EcCCC-ceeeeCC--CcEEEEeEEEEE
Q psy2816 2 GKYHRILEPGLNIL-------------------IPIIDKIKYVQSLKEIA---IDVPQ-QSAITSD--NVTLSIDGVLYL 56 (83)
Q Consensus 2 Gk~~~~~~pGlh~~-------------------~P~~~~v~~v~~~r~~~---~~~~~-~~v~TkD--~~~v~v~~~v~y 56 (83)
|++..+.+||-|-. .||-..|..+ +++... +..+. ..+...+ .+.+.......+
T Consensus 31 G~i~d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFv-n~~~~~~~kwGT~~pi~~~D~~~~~v~lra~G~ys~ 109 (211)
T PF13421_consen 31 GKIADVFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFV-NTKEITNIKWGTPNPIPYRDPEYGPVRLRAFGTYSF 109 (211)
T ss_pred CEEEEEecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEE-ECeEecCCccCCCCCeeecCCCCCcEEEEEEEEEEE
Confidence 66666778887742 2454556555 666542 22221 1222222 345777778888
Q ss_pred EEeChhhccccC
Q psy2816 57 KINDPYLASYGV 68 (83)
Q Consensus 57 ~I~d~~~~~~~v 68 (83)
||.||.+|+.++
T Consensus 110 rI~Dp~~F~~~~ 121 (211)
T PF13421_consen 110 RIVDPVLFIRNL 121 (211)
T ss_pred EEeCHHHHHHhh
Confidence 999999998765
No 27
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=80.45 E-value=1.3 Score=23.74 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=22.9
Q ss_pred EeEEEEEEEeChhhccccCCChHHHHHHHHHh
Q psy2816 50 IDGVLYLKINDPYLASYGVEDPEFAITQLAQT 81 (83)
Q Consensus 50 v~~~v~y~I~d~~~~~~~v~~~~~~~~~~aqs 81 (83)
-.+..||=|.||..+..++-+....+.+.+.+
T Consensus 16 ~~a~AQWvV~DP~NlAQ~Iinaa~eivqtS~T 47 (55)
T PF13605_consen 16 GPARAQWVVTDPGNLAQNIINAAKEIVQTSKT 47 (55)
T ss_pred CcceeEEEEeCchHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999988876655555554443
No 28
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=71.79 E-value=11 Score=26.97 Aligned_cols=53 Identities=25% Similarity=0.320 Sum_probs=33.8
Q ss_pred EcCceeEEEEEeeeEEEE-EcCC-CceeeeCC-----CcEEEEeEEEEEEEeChhhccccC
Q psy2816 15 LIPIIDKIKYVQSLKEIA-IDVP-QQSAITSD-----NVTLSIDGVLYLKINDPYLASYGV 68 (83)
Q Consensus 15 ~~P~~~~v~~v~~~r~~~-~~~~-~~~v~TkD-----~~~v~v~~~v~y~I~d~~~~~~~v 68 (83)
..|+-+.|..+ ++|+.. +... ++.+-=.| +.+++-..+..|+|+||.+++-.+
T Consensus 89 ~sp~k~eVyfv-ntqe~~girwGT~qpin~~dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I 148 (345)
T COG4260 89 ESPFKQEVYFV-NTQEIKGIRWGTPQPINYFDNFYNGELFLRAHGTYSIKVTDPILFIQQI 148 (345)
T ss_pred CCcccceEEEE-ecceecceecCCCCCeecccccccceeEEeecceEEEEecCHHHHHHhc
Confidence 34555666665 777655 3332 23332233 567888889999999999876554
No 29
>PF07628 DUF1589: Protein of unknown function (DUF1589); InterPro: IPR011480 This is a family of short hypothetical proteins found in Rhodopirellula baltica.
Probab=46.33 E-value=10 Score=24.10 Aligned_cols=14 Identities=43% Similarity=0.776 Sum_probs=10.8
Q ss_pred eeeeeCCccEEEcCc
Q psy2816 4 YHRILEPGLNILIPI 18 (83)
Q Consensus 4 ~~~~~~pGlh~~~P~ 18 (83)
-.|.++|||||. ||
T Consensus 82 s~RqVepGL~~~-p~ 95 (164)
T PF07628_consen 82 SPRQVEPGLRFW-PF 95 (164)
T ss_pred CccccCCcceeC-CC
Confidence 346789999986 66
No 30
>PRK11118 putative monooxygenase; Provisional
Probab=43.04 E-value=13 Score=22.28 Aligned_cols=11 Identities=36% Similarity=0.265 Sum_probs=9.2
Q ss_pred eCCccEEEcCc
Q psy2816 8 LEPGLNILIPI 18 (83)
Q Consensus 8 ~~pGlh~~~P~ 18 (83)
-+||+.||++-
T Consensus 32 ~EpGliWKIWT 42 (100)
T PRK11118 32 EEPGFIWKIWT 42 (100)
T ss_pred cCCCceEEEee
Confidence 48999999955
No 31
>PF12991 DUF3875: Domain of unknown function, B. Theta Gene description (DUF3875); InterPro: IPR024451 This domain of unknown function is found in proteins from Bacteroidetes, including the conjugation system ATPase, TraG.
Probab=41.34 E-value=49 Score=17.55 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=23.7
Q ss_pred CCCceeeeCCCcEEEEeEEEEEEEeChhhccccCCChH
Q psy2816 35 VPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPE 72 (83)
Q Consensus 35 ~~~~~v~TkD~~~v~v~~~v~y~I~d~~~~~~~v~~~~ 72 (83)
+...-+++||+ |.++-|++.=|+-|..+-++++
T Consensus 18 Ve~~civSk~g-----DiTv~f~v~LPEiFtls~~eYe 50 (54)
T PF12991_consen 18 VEHGCIVSKNG-----DITVAFRVELPEIFTLSEAEYE 50 (54)
T ss_pred eecCcEEecCC-----CEEEEEEecCCeeEEechhHhH
Confidence 34456788888 5678999988988877655544
No 32
>COG0806 RimM RimM protein, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis]
Probab=33.33 E-value=31 Score=22.46 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=14.3
Q ss_pred EEEcCceeEEEEEeeeEEEEEcCC
Q psy2816 13 NILIPIIDKIKYVQSLKEIAIDVP 36 (83)
Q Consensus 13 h~~~P~~~~v~~v~~~r~~~~~~~ 36 (83)
.+.+||++.+..-+|+....+.+.
T Consensus 144 ~~LIPf~~~~V~~Vd~~~k~I~v~ 167 (174)
T COG0806 144 ERLIPFVDAVVKEVDLEAKKIEVD 167 (174)
T ss_pred EEEecchHheeeEEecCCCEEEEe
Confidence 567788776655446655555443
No 33
>PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=29.24 E-value=93 Score=19.74 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=21.7
Q ss_pred eeeeCCCcEEEEeEEEEEEEeChh
Q psy2816 39 SAITSDNVTLSIDGVLYLKINDPY 62 (83)
Q Consensus 39 ~v~TkD~~~v~v~~~v~y~I~d~~ 62 (83)
--+|+.|....++-.+.|+|.|..
T Consensus 109 iRiss~Grrf~ie~a~vW~l~D~~ 132 (148)
T PF08670_consen 109 IRISSTGRRFRIERATVWNLIDED 132 (148)
T ss_pred EEEcCCCCeEEEeceEEEEEEcCC
Confidence 458999999999999999999975
No 34
>PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function.
Probab=28.30 E-value=1.6e+02 Score=18.50 Aligned_cols=68 Identities=21% Similarity=0.285 Sum_probs=43.5
Q ss_pred CccEEEcCceeEEEEEeeeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEeChhhccc-------------------cCCC
Q psy2816 10 PGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASY-------------------GVED 70 (83)
Q Consensus 10 pGlh~~~P~~~~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~d~~~~~~-------------------~v~~ 70 (83)
|=+.|.+||+--+-.- +-+-...|+...-.+..|+-. -=.-+=+||+ |+.+... ..+.
T Consensus 2 P~lsWl~PfIGH~GIc-~s~GvI~DFaG~y~V~~d~~a-FG~p~rY~ql-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (136)
T PF05608_consen 2 PVLSWLFPFIGHMGIC-DSDGVIRDFAGPYFVSVDNMA-FGSPTRYWQL-DPDKCCSAPNLSGHNCEEGYEHAELGGAES 78 (136)
T ss_pred ceeeeehhhccceEee-cCCceEEecCCCcEEcCCccc-cCCceEEEEe-CHHHCccccccccccccccccccccccHHH
Confidence 5578999998777665 555667777766666666533 1122346666 7766642 4557
Q ss_pred hHHHHHHHHH
Q psy2816 71 PEFAITQLAQ 80 (83)
Q Consensus 71 ~~~~~~~~aq 80 (83)
.++|++...+
T Consensus 79 wD~Av~~a~~ 88 (136)
T PF05608_consen 79 WDDAVQKASE 88 (136)
T ss_pred HHHHHHHHHH
Confidence 7888877665
No 35
>PF05282 AAR2: AAR2 protein; InterPro: IPR007946 This family consists of several eukaryotic AAR2-like proteins. The Saccharomyces cerevisiae protein AAR2 is involved in splicing pre-mRNA of the a1 cistron and other genes that are important for cell growth [].; PDB: 3SBT_B 3SBS_A.
Probab=28.05 E-value=38 Score=24.17 Aligned_cols=13 Identities=23% Similarity=0.764 Sum_probs=7.1
Q ss_pred eeee--eCCccEEEc
Q psy2816 4 YHRI--LEPGLNILI 16 (83)
Q Consensus 4 ~~~~--~~pGlh~~~ 16 (83)
|.++ +.||+||+.
T Consensus 30 F~GIK~IPpG~Hfi~ 44 (362)
T PF05282_consen 30 FKGIKMIPPGVHFIH 44 (362)
T ss_dssp --EEEEE-TT-EEEE
T ss_pred ceEEecCCCCceEEE
Confidence 5554 799999986
No 36
>TIGR02572 LcrR type III secretion system regulator LcrR. This protein is found in type III secretion operons and has been characterized in Yersinia as a regulator of the Low-Calcium Respone (LCR).
Probab=27.71 E-value=72 Score=20.18 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=14.0
Q ss_pred cCCChHHHHHHHHHhcC
Q psy2816 67 GVEDPEFAITQLAQTTM 83 (83)
Q Consensus 67 ~v~~~~~~~~~~aqs~l 83 (83)
.+.||-.+++.+|+.++
T Consensus 61 GL~NpFa~LylLae~~~ 77 (139)
T TIGR02572 61 GLANPFAALYLLAEAAI 77 (139)
T ss_pred CcCCcHHHHHHHHHHHH
Confidence 46799999999998764
No 37
>PTZ00491 major vault protein; Provisional
Probab=25.83 E-value=1.5e+02 Score=24.29 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=27.4
Q ss_pred eeeeCCCcEEEEeEEEEEEEe----Chh--hccccCCC
Q psy2816 39 SAITSDNVTLSIDGVLYLKIN----DPY--LASYGVED 70 (83)
Q Consensus 39 ~v~TkD~~~v~v~~~v~y~I~----d~~--~~~~~v~~ 70 (83)
.+-|+|...+.+..+..|+.. ||. +-.|++.|
T Consensus 533 ~vET~DhArL~l~LsYnW~F~v~~~d~~~~~k~Fsv~D 570 (850)
T PTZ00491 533 HVETSDHARLALQLSYNWYFDVTDGNPEDAQKCFSVPD 570 (850)
T ss_pred EEEEcccceEEEEEEEEEEEecCCCChhhHhheeccCc
Confidence 588999999999999999987 675 66788866
No 38
>PF08803 ydhR: Putative mono-oxygenase ydhR; InterPro: IPR014910 YdhR is a homodimeric protein that comprises of a central four-stranded beta sheet and four surrounding alpha helices []. It shows structural homology to the ActVA-Orf6 and YgiN proteins which indicates it could be a mono-oxygenase. ; PDB: 1WD6_B 2HIQ_B 2ASY_B.
Probab=25.08 E-value=36 Score=20.20 Aligned_cols=11 Identities=45% Similarity=0.362 Sum_probs=8.8
Q ss_pred eCCccEEEcCc
Q psy2816 8 LEPGLNILIPI 18 (83)
Q Consensus 8 ~~pGlh~~~P~ 18 (83)
-+|||.||++-
T Consensus 29 ~ePGliwKiWt 39 (97)
T PF08803_consen 29 QEPGLIWKIWT 39 (97)
T ss_dssp TSTTEEEEEEE
T ss_pred hCCCeEEEEEE
Confidence 48999999844
No 39
>KOG2304|consensus
Probab=22.97 E-value=31 Score=24.12 Aligned_cols=18 Identities=28% Similarity=0.408 Sum_probs=12.5
Q ss_pred eCCccEEEcCc-eeEEEEE
Q psy2816 8 LEPGLNILIPI-IDKIKYV 25 (83)
Q Consensus 8 ~~pGlh~~~P~-~~~v~~v 25 (83)
.=.||||.+|. +-+...+
T Consensus 149 rf~GlHFfNPvPvMKLvEV 167 (298)
T KOG2304|consen 149 RFAGLHFFNPVPVMKLVEV 167 (298)
T ss_pred hhceeeccCCchhHHHhhh
Confidence 45699999998 5454443
No 40
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=22.77 E-value=77 Score=16.13 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=13.9
Q ss_pred eeeeCCCcEEEEeEEEEEEEe
Q psy2816 39 SAITSDNVTLSIDGVLYLKIN 59 (83)
Q Consensus 39 ~v~TkD~~~v~v~~~v~y~I~ 59 (83)
-++|.||..+.+.-.=.++|-
T Consensus 9 iVlT~dGeF~~ik~~~~~~vG 29 (56)
T PF12791_consen 9 IVLTPDGEFIKIKRKPGMEVG 29 (56)
T ss_pred EEEcCCCcEEEEeCCCCCccc
Confidence 478888888877655444443
No 41
>PF14249 Tocopherol_cycl: Tocopherol cyclase
Probab=21.33 E-value=45 Score=24.01 Aligned_cols=10 Identities=30% Similarity=0.467 Sum_probs=4.4
Q ss_pred EEEEEEEeCh
Q psy2816 52 GVLYLKINDP 61 (83)
Q Consensus 52 ~~v~y~I~d~ 61 (83)
+.+.|.|.||
T Consensus 21 f~~mysi~dp 30 (336)
T PF14249_consen 21 FAFMYSIEDP 30 (336)
T ss_pred EEEEEEEEcC
Confidence 3344444444
No 42
>PF13123 DUF3978: Protein of unknown function (DUF3978)
Probab=20.93 E-value=1.4e+02 Score=18.85 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=21.6
Q ss_pred CCccEEEcCceeEEEEEeeeEEEEEcCCCce
Q psy2816 9 EPGLNILIPIIDKIKYVQSLKEIAIDVPQQS 39 (83)
Q Consensus 9 ~pGlh~~~P~~~~v~~v~~~r~~~~~~~~~~ 39 (83)
.--+|+.+|.+..-....+++.+.+....+.
T Consensus 76 tk~FhY~lp~Ise~~~~~~iQ~qsfG~~GEl 106 (145)
T PF13123_consen 76 TKAFHYLLPIISEGEDEMNIQVQSFGLQGEL 106 (145)
T ss_pred hhheeeEeceeecCccceeeEEEecccccce
Confidence 3457899998655553348888888886543
No 43
>KOG2738|consensus
Probab=20.79 E-value=1.8e+02 Score=21.18 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=26.5
Q ss_pred eCCCcEEEEeEEEEEEEe--ChhhccccCCChHHHHHHHHHh
Q psy2816 42 TSDNVTLSIDGVLYLKIN--DPYLASYGVEDPEFAITQLAQT 81 (83)
Q Consensus 42 TkD~~~v~v~~~v~y~I~--d~~~~~~~v~~~~~~~~~~aqs 81 (83)
-.||-++.||.+|+++=- |-. -.|-+.|.++..+++.+.
T Consensus 197 LedGDIvNiDVtvY~~GyHGDln-eTffvG~Vde~~k~LVkv 237 (369)
T KOG2738|consen 197 LEDGDIVNIDVTVYLNGYHGDLN-ETFFVGNVDEKAKKLVKV 237 (369)
T ss_pred CCCCCEEeEEEEEEeccccCccc-cceEeeccCHHHHHHHHH
Confidence 368889999999998743 332 233356677777777664
No 44
>PF08111 Pea-VEAacid: Pea-VEAacid family; InterPro: IPR012593 This family consists of the PEA-VEAacid neuropeptides family. These neuropeptides are isolated from the abdominal perisympathetic organs of the American cockroach. These peptides are found together with Pea-YLS-amide and Pea-SKNacid, giving a unique neuropeptide pattern in abdominal perisympathetic organs. The functions of these neuropeptides are unknown [].; GO: 0005184 neuropeptide hormone activity, 0007218 neuropeptide signaling pathway, 0005576 extracellular region
Probab=20.70 E-value=40 Score=12.91 Aligned_cols=8 Identities=38% Similarity=0.821 Sum_probs=4.5
Q ss_pred eeCCccEE
Q psy2816 7 ILEPGLNI 14 (83)
Q Consensus 7 ~~~pGlh~ 14 (83)
++.||-|.
T Consensus 2 tltpgshv 9 (15)
T PF08111_consen 2 TLTPGSHV 9 (15)
T ss_pred cccCccch
Confidence 35667653
Done!