Query psy2816
Match_columns 83
No_of_seqs 138 out of 1023
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 17:41:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fvg_A Stomatin; mixed alpha-b 99.9 3E-22 1E-26 123.5 4.0 69 14-83 3-71 (133)
2 2rpb_A Hypothetical membrane p 99.6 1.5E-15 5.2E-20 90.4 5.0 58 26-83 5-62 (113)
3 3bk6_A PH stomatin; archaea, t 99.5 2.1E-15 7E-20 97.0 3.5 65 18-83 2-66 (188)
4 1win_A Flotillin 2; BAND 7 dom 99.4 8.4E-14 2.9E-18 86.4 0.6 50 18-68 3-53 (143)
5 4a02_A EFCBM33A, CBM33, chitin 22.4 21 0.00073 22.1 0.3 20 52-71 144-163 (166)
6 3ecf_A NTF2-like protein; stru 20.0 61 0.0021 19.2 1.9 15 6-20 96-110 (130)
7 2pjx_C Syntaxin-4; membrane tr 18.8 74 0.0025 13.6 1.6 24 31-54 4-27 (29)
8 1i9z_A Synaptojanin, phosphati 16.6 2.6E+02 0.0089 18.9 5.5 44 19-64 282-325 (347)
9 3uam_A Chitin binding domain; 16.4 32 0.0011 22.3 0.2 20 52-71 194-213 (216)
10 3sbt_B A1 cistron-splicing fac 16.1 65 0.0022 22.4 1.7 14 3-16 29-45 (363)
No 1
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.85 E-value=3e-22 Score=123.47 Aligned_cols=69 Identities=35% Similarity=0.576 Sum_probs=56.6
Q ss_pred EEcCceeEEEEEeeeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEeChhhccccCCChHHHHHHHHHhcC
Q psy2816 14 ILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTM 83 (83)
Q Consensus 14 ~~~P~~~~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~d~~~~~~~v~~~~~~~~~~aqs~l 83 (83)
++.||+|++.++ |+|.+++++++|+++|+|++.|.|+++++|||.||.+|+++++|++.++++++|++|
T Consensus 3 l~~P~id~v~~v-d~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~Dp~~~~~~v~~~~~~l~~~~~~~l 71 (133)
T 4fvg_A 3 LGSPSTDSAAKV-DMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTL 71 (133)
T ss_dssp -----------C-CCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESCHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCCCceeEEEEE-EeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEeehHHhHhhhhhHHHHHHHHHHHHH
Confidence 788999999987 999999999999999999999999999999999999999999999999999999875
No 2
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.58 E-value=1.5e-15 Score=90.45 Aligned_cols=58 Identities=45% Similarity=0.669 Sum_probs=55.5
Q ss_pred eeeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEeChhhccccCCChHHHHHHHHHhcC
Q psy2816 26 QSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTM 83 (83)
Q Consensus 26 ~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~d~~~~~~~v~~~~~~~~~~aqs~l 83 (83)
+|+|.+++++++++++|+|++.|.++++++|||.||.+|++++.|+..+++++++++|
T Consensus 5 vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~dp~~~~~~v~~~~~~l~~~~~~~l 62 (113)
T 2rpb_A 5 VDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAVYNVSDFLMAIVKLAQTNL 62 (113)
T ss_dssp CCCCCEEEECCCEEEECTTSCEEEECEEEEEEESCTTTCTTTTTHHHHHHHHHHHHHH
T ss_pred EeeeEEEEecCcceeEeCCCCEEEEEEEEEEEECCHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999874
No 3
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.55 E-value=2.1e-15 Score=96.97 Aligned_cols=65 Identities=37% Similarity=0.575 Sum_probs=61.0
Q ss_pred ceeEEEEEeeeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEeChhhccccCCChHHHHHHHHHhcC
Q psy2816 18 IIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTM 83 (83)
Q Consensus 18 ~~~~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~d~~~~~~~v~~~~~~~~~~aqs~l 83 (83)
|++++..+ |+|.+++++++++++|+|+++|.|+++++|||.||.++++++.|+..+++++++++|
T Consensus 2 fi~~v~~v-d~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~dp~~~~~~v~~~~~~i~~~~~~~l 66 (188)
T 3bk6_A 2 IFEKAVIV-DLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQISQTTL 66 (188)
T ss_dssp CEEECCCC-CSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred ceEEEEEE-eeeEEEEecCCceeEcCCCCEEEEEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHH
Confidence 67888776 999999999999999999999999999999999999999999999999999998764
No 4
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.36 E-value=8.4e-14 Score=86.40 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=45.3
Q ss_pred ceeEEEEEeeeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEe-ChhhccccC
Q psy2816 18 IIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKIN-DPYLASYGV 68 (83)
Q Consensus 18 ~~~~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~-d~~~~~~~v 68 (83)
|+|++.++ |+|++++++++|+++|+|++.+.|+++++|||. ||.++.+.+
T Consensus 3 ~i~~v~~v-dlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~ 53 (143)
T 1win_A 3 SGSSGQRI-SLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVAC 53 (143)
T ss_dssp CCCCCCSC-CCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHH
T ss_pred cceEEEEE-ECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHH
Confidence 57888876 999999999999999999999999999999998 688887665
No 5
>4a02_A EFCBM33A, CBM33, chitin binding protein; chitin degradation, chitin oxidation; 0.95A {Enterococcus faecalis} SCOP: b.1.18.0
Probab=22.42 E-value=21 Score=22.14 Aligned_cols=20 Identities=25% Similarity=0.037 Sum_probs=16.4
Q ss_pred EEEEEEEeChhhccccCCCh
Q psy2816 52 GVLYLKINDPYLASYGVEDP 71 (83)
Q Consensus 52 ~~v~y~I~d~~~~~~~v~~~ 71 (83)
..+.|++.|+..++|++.|+
T Consensus 144 I~~vWq~~Dt~eaFY~csDV 163 (166)
T 4a02_A 144 IYAVWGIGDTVNAFYQAIDV 163 (166)
T ss_dssp EEEEEEESSSSEEEEEEEEE
T ss_pred EEEEEEecCCCCCCEEEEEE
Confidence 56789999999999987654
No 6
>3ecf_A NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Anabaena variabilis atcc 29413} SCOP: d.17.4.21
Probab=20.02 E-value=61 Score=19.17 Aligned_cols=15 Identities=33% Similarity=0.643 Sum_probs=11.8
Q ss_pred eeeCCccEEEcCcee
Q psy2816 6 RILEPGLNILIPIID 20 (83)
Q Consensus 6 ~~~~pGlh~~~P~~~ 20 (83)
+--+.|+.++||++|
T Consensus 96 ~~deegi~~iwp~~d 110 (130)
T 3ecf_A 96 RLDEEGIVYVWPMFD 110 (130)
T ss_dssp EEETTEEEEEECCBC
T ss_pred eecccCcEEEEeccC
Confidence 445889999999876
No 7
>2pjx_C Syntaxin-4; membrane trafficking, SM protein, snare proteins, endocytosis/exocytosis complex; 3.15A {Mus musculus}
Probab=18.84 E-value=74 Score=13.62 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=13.0
Q ss_pred EEEcCCCceeeeCCCcEEEEeEEE
Q psy2816 31 IAIDVPQQSAITSDNVTLSIDGVL 54 (83)
Q Consensus 31 ~~~~~~~~~v~TkD~~~v~v~~~v 54 (83)
++-++..-+-++.|.-.+.|..++
T Consensus 4 rthelrqgdnisddedevrvalvv 27 (29)
T 2pjx_C 4 RTHELRQGDNISDDEDEVRVALVV 27 (29)
T ss_pred chhhhhcCCCCCCccceeEEEEEe
Confidence 334443334456666667766654
No 8
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=16.59 E-value=2.6e+02 Score=18.91 Aligned_cols=44 Identities=16% Similarity=0.010 Sum_probs=32.7
Q ss_pred eeEEEEEeeeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEeChhhc
Q psy2816 19 IDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLA 64 (83)
Q Consensus 19 ~~~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~d~~~~ 64 (83)
.|++-..-.++...++..+ +.+.|..+|...+.+..++.|+.+-
T Consensus 282 cDRIL~~~~l~~~~Y~~~~--~~~SDH~PV~a~f~~~v~~~~~~~~ 325 (347)
T 1i9z_A 282 TDRILYRGELVPHSYQSVP--LYYSDHRPIYATYEANIVKVDREKK 325 (347)
T ss_dssp CEEEEEESSCEEEEEEECC--CCSSSBCCEEEEEEEEEEEECHHHH
T ss_pred cceEEEeCCEEEEEEEecC--ccCCCcCCceeEEEEEEecCCHHHH
Confidence 6877654344555555443 7889999999999999999998654
No 9
>3uam_A Chitin binding domain; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, protein binding; 2.00A {Burkholderia pseudomallei}
Probab=16.41 E-value=32 Score=22.27 Aligned_cols=20 Identities=25% Similarity=0.115 Sum_probs=16.4
Q ss_pred EEEEEEEeChhhccccCCCh
Q psy2816 52 GVLYLKINDPYLASYGVEDP 71 (83)
Q Consensus 52 ~~v~y~I~d~~~~~~~v~~~ 71 (83)
..+.|++.|...++|++.|+
T Consensus 194 Iy~vWqraDt~eaFYnCsDV 213 (216)
T 3uam_A 194 LLAVWDVADTANAFYQVIDL 213 (216)
T ss_dssp EEEEEEETTSSEEEEEEEEE
T ss_pred EEEEEEecCCCCCCEEEEEE
Confidence 46789999999999987654
No 10
>3sbt_B A1 cistron-splicing factor AAR2; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} PDB: 3sbs_A
Probab=16.14 E-value=65 Score=22.42 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=10.7
Q ss_pred ceeee--eCCc-cEEEc
Q psy2816 3 KYHRI--LEPG-LNILI 16 (83)
Q Consensus 3 k~~~~--~~pG-lh~~~ 16 (83)
+|.++ ..|| +||++
T Consensus 29 ~F~GIK~IPpG~~Hfih 45 (363)
T 3sbt_B 29 PFHGIKDIPIGHVHVIH 45 (363)
T ss_dssp CCCEEEEECTTSCEEEE
T ss_pred CCcceecCCCCCCEEEE
Confidence 46654 7999 99886
Done!