Query psy2816
Match_columns 83
No_of_seqs 138 out of 1023
Neff 7.9
Searched_HMMs 13730
Date Fri Aug 16 17:41:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2816.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2816hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wina_ d.43.2.1 (A:) Flotilli 99.2 1.7E-12 1.2E-16 78.9 1.0 62 21-83 6-76 (143)
2 d1f0ya2 c.2.1.6 (A:12-203) Sho 21.7 11 0.00082 21.8 0.4 9 10-18 144-152 (192)
3 d3ecfa1 d.17.4.21 (A:2-129) Un 21.0 27 0.002 19.1 1.9 15 6-20 94-108 (128)
4 d1hnfa1 b.1.1.1 (A:4-104) CD2, 19.8 11 0.00082 20.3 0.1 24 6-29 8-31 (101)
5 d1t77a2 b.55.1.6 (A:2076-2185) 17.5 22 0.0016 19.0 1.0 39 10-50 52-90 (110)
6 d1g7sa2 b.43.3.1 (A:460-587) I 16.4 83 0.0061 16.9 4.5 50 3-54 26-76 (128)
7 d1wdka3 c.2.1.6 (A:311-496) Fa 14.3 16 0.0012 20.9 -0.1 8 11-18 139-146 (186)
8 d1pm4a_ b.135.1.1 (A:) Superan 14.0 38 0.0028 17.8 1.4 15 4-18 72-86 (117)
9 d2ft1a1 d.183.1.1 (A:104-383) 11.7 47 0.0035 19.6 1.5 28 39-66 248-275 (280)
10 d2f06a1 d.58.18.11 (A:71-141) 11.3 92 0.0067 14.7 2.9 13 68-80 45-57 (71)
No 1
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.18 E-value=1.7e-12 Score=78.92 Aligned_cols=62 Identities=19% Similarity=0.204 Sum_probs=53.7
Q ss_pred EEEEEeeeEEEEEcCCCceeeeCCCcEEEEeEEEEEEEeChhhccc---------cCCChHHHHHHHHHhcC
Q psy2816 21 KIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASY---------GVEDPEFAITQLAQTTM 83 (83)
Q Consensus 21 ~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v~~~v~y~I~d~~~~~~---------~v~~~~~~~~~~aqs~l 83 (83)
++.++ |+|.++++++.++++|+||+++.|+++++|||.||.++++ .+.+++..++.+++++|
T Consensus 6 s~~ri-slr~~~l~~~~q~v~TkD~v~v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~l 76 (143)
T d1wina_ 6 SGQRI-SLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHL 76 (143)
T ss_dssp CCCSC-CCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred ceeEe-eeeEEeecCCCceEECCCCCEEEEEEEEEEEEcCcHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence 34455 9999999999999999999999999999999999998874 45678888998888764
No 2
>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.71 E-value=11 Score=21.82 Aligned_cols=9 Identities=33% Similarity=0.851 Sum_probs=7.7
Q ss_pred CccEEEcCc
Q psy2816 10 PGLNILIPI 18 (83)
Q Consensus 10 pGlh~~~P~ 18 (83)
-|+||.+|.
T Consensus 144 ig~HffnP~ 152 (192)
T d1f0ya2 144 AGLHFFNPV 152 (192)
T ss_dssp EEEEECSST
T ss_pred Eeecccccc
Confidence 389999997
No 3
>d3ecfa1 d.17.4.21 (A:2-129) Uncharacterized protein Ava4193 {Anabaena variabilis [TaxId: 1172]}
Probab=20.98 E-value=27 Score=19.11 Aligned_cols=15 Identities=33% Similarity=0.643 Sum_probs=11.7
Q ss_pred eeeCCccEEEcCcee
Q psy2816 6 RILEPGLNILIPIID 20 (83)
Q Consensus 6 ~~~~pGlh~~~P~~~ 20 (83)
+--+.|+.++||++|
T Consensus 94 ~lDEeGis~iWP~fD 108 (128)
T d3ecfa1 94 RLDEEGIVYVWPMFD 108 (128)
T ss_dssp EEETTEEEEEECCBC
T ss_pred eecccCcEEEEeccC
Confidence 445889999999876
No 4
>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.84 E-value=11 Score=20.28 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=17.4
Q ss_pred eeeCCccEEEcCceeEEEEEeeeE
Q psy2816 6 RILEPGLNILIPIIDKIKYVQSLK 29 (83)
Q Consensus 6 ~~~~pGlh~~~P~~~~v~~v~~~r 29 (83)
+.|++|+++-+|-+++-..+.++|
T Consensus 8 GaL~~di~ldIP~fq~~~~iddIr 31 (101)
T d1hnfa1 8 GALGQDINLDIPSFQMSDDIDDIK 31 (101)
T ss_dssp EETTSCEEECCTTCCCCSSEEEEE
T ss_pred ecccCCccccCCCccccCCcceeE
Confidence 568999999999987544444444
No 5
>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.53 E-value=22 Score=18.96 Aligned_cols=39 Identities=10% Similarity=0.137 Sum_probs=21.4
Q ss_pred CccEEEcCceeEEEEEeeeEEEEEcCCCceeeeCCCcEEEE
Q psy2816 10 PGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSI 50 (83)
Q Consensus 10 pGlh~~~P~~~~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v 50 (83)
.+.+..||+ +.+..+. .|...+.-...|+.+.|+.+.-+
T Consensus 52 ~~~~~~w~~-~~i~~v~-~Rr~ll~~~alEif~~~~~s~~~ 90 (110)
T d1t77a2 52 EGLHGKWLF-TEIRSIF-SRRYLLQNTALEIFMANRVAVMF 90 (110)
T ss_dssp CCTTCEEEG-GGEEEEE-EEEETTEEEEEEEEETTSCEEEE
T ss_pred cccceEEeH-HHHHHHH-hhhhcCCceEEEEEEcCCcEEEE
Confidence 345556766 3455442 33333322346889999877544
No 6
>d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=16.38 E-value=83 Score=16.87 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=31.8
Q ss_pred cee-eeeCCccEEEcCceeEEEEEeeeEEEEEcCCCceeeeCCCcEEEEeEEE
Q psy2816 3 KYH-RILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVL 54 (83)
Q Consensus 3 k~~-~~~~pGlh~~~P~~~~v~~v~~~r~~~~~~~~~~v~TkD~~~v~v~~~v 54 (83)
++. +++.+|.....+....+.++.+++. -+-+-.+....|.+.+.++...
T Consensus 26 ~V~sG~ik~G~~l~~~p~~~~g~VksIq~--~~~~v~~A~~G~~Vai~I~g~~ 76 (128)
T d1g7sa2 26 EVLTGVIRQGYPLMNDDGETVGTVESMQD--KGENLKSASRGQKVAMAIKDAV 76 (128)
T ss_dssp EEEEEEEETTCEEECTTSCEEEEEEEEEE--TTEEESEEETTCCEEEEEETCC
T ss_pred EEeeeeecCCCEEEECCCCceEEEEEEEE--CCccccEEcCCCEEEEEEcCcc
Confidence 553 6889999998877655555433322 2222345677888888887644
No 7
>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}
Probab=14.26 E-value=16 Score=20.89 Aligned_cols=8 Identities=25% Similarity=0.895 Sum_probs=7.3
Q ss_pred ccEEEcCc
Q psy2816 11 GLNILIPI 18 (83)
Q Consensus 11 Glh~~~P~ 18 (83)
|+||.+|.
T Consensus 139 g~Hf~nP~ 146 (186)
T d1wdka3 139 GMHFFNPV 146 (186)
T ss_dssp EEECCSST
T ss_pred eeccccCc
Confidence 99999888
No 8
>d1pm4a_ b.135.1.1 (A:) Superantigen (mitogen) Ypm {Yersinia pseudotuberculosis [TaxId: 633]}
Probab=14.00 E-value=38 Score=17.77 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=10.4
Q ss_pred eeeeeCCccEEEcCc
Q psy2816 4 YHRILEPGLNILIPI 18 (83)
Q Consensus 4 ~~~~~~pGlh~~~P~ 18 (83)
|..-..||+.|+|-.
T Consensus 72 yedyyt~glswiw~i 86 (117)
T d1pm4a_ 72 YEDYYTSGLSWIWKI 86 (117)
T ss_dssp EEEEESSCCCEEEEE
T ss_pred chhcccCCceEEEEE
Confidence 334468999998743
No 9
>d2ft1a1 d.183.1.1 (A:104-383) Major capsid protein gp5 {Bacteriophage HK97 [TaxId: 37554]}
Probab=11.65 E-value=47 Score=19.57 Aligned_cols=28 Identities=14% Similarity=0.079 Sum_probs=24.5
Q ss_pred eeeeCCCcEEEEeEEEEEEEeChhhccc
Q psy2816 39 SAITSDNVTLSIDGVLYLKINDPYLASY 66 (83)
Q Consensus 39 ~v~TkD~~~v~v~~~v~y~I~d~~~~~~ 66 (83)
.-.++|...+.+...+-|.|.+|+.+++
T Consensus 248 ~~f~~~~v~~ra~~r~~~~v~~~~Afv~ 275 (280)
T d2ft1a1 248 DNFVKNMLTILCEERLALAHYRPTAIIK 275 (280)
T ss_dssp THHHHTEEEEEEEEEECEEESCGGGEEE
T ss_pred chhhCCeEEEEEEEEEeeEEeCCCeEEE
Confidence 3477899999999999999999998875
No 10
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=11.31 E-value=92 Score=14.73 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=6.0
Q ss_pred CCChHHHHHHHHH
Q psy2816 68 VEDPEFAITQLAQ 80 (83)
Q Consensus 68 v~~~~~~~~~~aq 80 (83)
++|++.|...+.+
T Consensus 45 vdd~~~a~~~L~~ 57 (71)
T d2f06a1 45 PSNMDKCIEVLKE 57 (71)
T ss_dssp ESCHHHHHHHHHH
T ss_pred ECCHHHHHHHHHH
Confidence 3445555444443
Done!