RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2816
         (83 letters)



>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 143

 Score = 48.5 bits (115), Expect = 2e-09
 Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 9/66 (13%)

Query: 27 SLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDP---------YLASYGVEDPEFAITQ 77
          SL+ + +    +   T++ V L++ GV  +KI                  V+D +  + Q
Sbjct: 11 SLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQ 70

Query: 78 LAQTTM 83
            +  +
Sbjct: 71 TLEGHL 76


>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase
          subunit beta, DsrB {Desulfovibrio vulgaris [TaxId:
          881]}
          Length = 134

 Score = 23.8 bits (52), Expect = 2.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 2  GKYHRILEPG 11
            YH ILEPG
Sbjct: 40 WLYHEILEPG 49


>d3c7bb2 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase
          subunit beta, DsrB {Archaeoglobus fulgidus [TaxId:
          2234]}
          Length = 119

 Score = 23.8 bits (52), Expect = 2.6
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 3  KYHRILEPG 11
          KYH +++PG
Sbjct: 28 KYHEVVKPG 36


>d2bcgg3 d.16.1.6 (G:302-399) Guanine nucleotide dissociation
          inhibitor, GDI {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 98

 Score = 23.1 bits (50), Expect = 3.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 5  HRILEPGLNILIPIIDKIKYVQSLKE 30
          H  LEP   +L PI +K   +  L E
Sbjct: 73 HIELEPAFKLLGPIEEKFMGIAELFE 98


>d1d5ta2 d.16.1.6 (A:292-388) Guanine nucleotide dissociation
          inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]}
          Length = 97

 Score = 22.7 bits (49), Expect = 4.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 5  HRILEPGLNILIPIIDKIKYVQSLKE 30
           + +EP L +L PI  K   +  L E
Sbjct: 72 EKEVEPALGLLEPIDQKFVAISDLYE 97


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.138    0.382 

Gapped
Lambda     K      H
   0.267   0.0754    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 305,174
Number of extensions: 11818
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 6
Length of query: 83
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 34
Effective length of database: 1,734,826
Effective search space: 58984084
Effective search space used: 58984084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (21.8 bits)