BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy282
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
GLE+E DY Y+ G C + K K++ + + L K GP+SV +N+
Sbjct: 80 GLETEDDYSYQ---GHMQSCQFSAEKAKVYIQDSVELSQNEQKLAAWLAKRGPISVAINA 136
Query: 62 DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIE 121
+ Y R CSP+ + HAVLLVGYG++ D+P+W ++NSWG ++G++ +
Sbjct: 137 FGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLH 196
Query: 122 RGNNACGKDFL 132
RG+ ACG + +
Sbjct: 197 RGSGACGVNTM 207
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 197
+ + L K GP+SV +N+ + FY R CSP+ + HAVLLVGYG++ D+P+W
Sbjct: 118 QKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFW 177
Query: 198 LVRNSWGPIGPDEGFF 213
++NSWG ++G++
Sbjct: 178 AIKNSWGTDWGEKGYY 193
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 5 SEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLI 64
+E YPY + NGE+ +C + ++ + + L + GPL++ +++
Sbjct: 85 TEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLPQDEDAIAAYLAENGPLAIAVDATSF 144
Query: 65 HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN 124
DYNG + +C+ L H VLLVGY + PYW+++NSW + ++G+ +IE+G
Sbjct: 145 MDYNGGILT----SCTSEQLDHGVLLVGYNDASNPPYWIIKNSWSNMWGEDGYIRIEKGT 200
Query: 125 NAC 127
N C
Sbjct: 201 NQC 203
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 197
+ + L + GPL++ +++ YNG + +C+ L H VLLVGY + PYW
Sbjct: 123 DAIAAYLAENGPLAIAVDATSFMDYNGGILT----SCTSEQLDHGVLLVGYNDASNPPYW 178
Query: 198 LVRNSWGPIGPDEGFFKIEHTLRSHLTH 225
+++NSW + ++G+ +IE L +
Sbjct: 179 IIKNSWSNMWGEDGYIRIEKGTNQCLMN 206
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 70/135 (51%), Gaps = 17/135 (12%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSV-- 57
G+ E YPYK G+ C + K F KD + N E M + + Y P+S
Sbjct: 83 GIMGEDTYPYK---GQDDHCKFQPDKAIAFV-KDVANITMNDEEAMVEAVALYNPVSFAF 138
Query: 58 -LLNSDLIHD---YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGP 113
+ N L++ Y+ T K +P + HAVL VGYG+++ IPYW+V+NSWGP
Sbjct: 139 EVTNDFLMYRKGIYSSTSCHK-----TPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWG 193
Query: 114 DEGFFKIERGNNACG 128
G+F IERG N CG
Sbjct: 194 MNGYFLIERGKNMCG 208
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 11/92 (11%)
Query: 132 LHFNGSETMKKILYKYGPLSVGL---NSHLIH---FYNGTPIRKNDETCSPYDLGHAVLL 185
+ N E M + + Y P+S N L++ Y+ T K +P + HAVL
Sbjct: 116 ITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHK-----TPDKVNHAVLA 170
Query: 186 VGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEH 217
VGYG+++ IPYW+V+NSWGP G+F IE
Sbjct: 171 VGYGEENGIPYWIVKNSWGPQWGMNGYFLIER 202
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
GLE+E YPY G+ C Y+K V TG +H +K ++ GP +V ++
Sbjct: 172 GLETESSYPYTAVEGQ---CRYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVD 228
Query: 61 --SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFF 118
SD + +G +TCSP + HAVL VGYG Q YW+V+NSWG + G+
Sbjct: 229 VESDFMMYRSGI---YQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYI 285
Query: 119 KIERGN-NACG 128
++ R N CG
Sbjct: 286 RMVRNRGNMCG 296
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 135 NGSET-MKKILYKYGPLSVGLN--SHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
+GSE +K ++ GP +V ++ S + + +G +TCSP + HAVL VGYG Q
Sbjct: 207 SGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGI---YQSQTCSPLRVNHAVLAVGYGTQ 263
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKI 215
YW+V+NSWG + G+ ++
Sbjct: 264 GGTDYWIVKNSWGLSWGERGYIRM 287
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 8/130 (6%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKL-FTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
G++SE YPY+ A+G C YD ++V +G +L + ++ GP++V +
Sbjct: 197 GIDSEGAYPYEMADG---NCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVAFD 253
Query: 61 SD-LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
+D Y+G + TC HAVL+VGYG ++ YWLV+NSWG +G+FK
Sbjct: 254 ADDPFGSYSGGVYY--NPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFK 311
Query: 120 IER-GNNACG 128
I R NN CG
Sbjct: 312 IARNANNHCG 321
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 173 TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL-THDIPGVP 231
TC HAVL+VGYG ++ YWLV+NSWG +G+FKI +H + VP
Sbjct: 270 TCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAGVASVP 329
Query: 232 T 232
T
Sbjct: 330 T 330
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 5/129 (3%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
G++SE YPY G+ C Y+ + K G + + +K+ + + GP+SV ++
Sbjct: 80 GIDSEDAYPYV---GQDESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAID 136
Query: 61 SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
+ L + DE CS +L HAVL VGYG Q +W+++NSWG ++G+ +
Sbjct: 137 ASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQKGNKHWIIKNSWGESWGNKGYILM 196
Query: 121 ERG-NNACG 128
R NNACG
Sbjct: 197 ARNKNNACG 205
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 197
+ +K+ + + GP+SV +++ L F + DE CS +L HAVL VGYG Q +W
Sbjct: 119 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQKGNKHW 178
Query: 198 LVRNSWGPIGPDEGFF 213
+++NSWG ++G+
Sbjct: 179 IIKNSWGESWGNKGYI 194
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
G++SE YPY G++ C Y+ + K G + + +K+ + + GP+SV ++
Sbjct: 179 GIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAID 235
Query: 61 SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
+ L + DE+C+ +L HAVL VGYG Q +W+++NSWG ++G+ +
Sbjct: 236 ASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILM 295
Query: 121 ERG-NNACG 128
R NNACG
Sbjct: 296 ARNKNNACG 304
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 197
+ +K+ + + GP+SV +++ L F + DE+C+ +L HAVL VGYG Q +W
Sbjct: 218 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 277
Query: 198 LVRNSWGPIGPDEGFF 213
+++NSWG ++G+
Sbjct: 278 IIKNSWGENWGNKGYI 293
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
G++SE YPY G++ C Y+ + K G + + +K+ + + GP+SV ++
Sbjct: 80 GIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAID 136
Query: 61 SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
+ L + DE+C+ +L HAVL VGYG Q +W+++NSWG ++G+ +
Sbjct: 137 ASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILM 196
Query: 121 ERG-NNACG 128
R NNACG
Sbjct: 197 ARNKNNACG 205
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 197
+ +K+ + + GP+SV +++ L F + DE+C+ +L HAVL VGYG Q +W
Sbjct: 119 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 178
Query: 198 LVRNSWGPIGPDEGFF 213
+++NSWG ++G+
Sbjct: 179 IIKNSWGENWGNKGYI 194
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
G++SE YPY G++ C Y+ + K G + + +K+ + + GP+SV ++
Sbjct: 78 GIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAID 134
Query: 61 SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
+ L + DE+C+ +L HAVL VGYG Q +W+++NSWG ++G+ +
Sbjct: 135 ASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILM 194
Query: 121 ERG-NNACG 128
R NNACG
Sbjct: 195 ARNKNNACG 203
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 197
+ +K+ + + GP+SV +++ L F + DE+C+ +L HAVL VGYG Q +W
Sbjct: 117 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 176
Query: 198 LVRNSWGPIGPDEGFF 213
+++NSWG ++G+
Sbjct: 177 IIKNSWGENWGNKGYI 192
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
G++SE YPY G++ C Y+ + K G + + +K+ + + GP+SV ++
Sbjct: 82 GIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAID 138
Query: 61 SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
+ L + DE+C+ +L HAVL VGYG Q +W+++NSWG ++G+ +
Sbjct: 139 ASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILM 198
Query: 121 ERG-NNACG 128
R NNACG
Sbjct: 199 ARNKNNACG 207
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 197
+ +K+ + + GP+SV +++ L F + DE+C+ +L HAVL VGYG Q +W
Sbjct: 121 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 180
Query: 198 LVRNSWGPIGPDEGFF 213
+++NSWG ++G+
Sbjct: 181 IIKNSWGENWGNKGYI 196
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
G++SE YPY G++ C Y+ + K G + + +K+ + + GP+SV ++
Sbjct: 79 GIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAID 135
Query: 61 SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
+ L + DE+C+ +L HAVL VGYG Q +W+++NSWG ++G+ +
Sbjct: 136 ASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILM 195
Query: 121 ERG-NNACG 128
R NNACG
Sbjct: 196 ARNKNNACG 204
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 197
+ +K+ + + GP+SV +++ L F + DE+C+ +L HAVL VGYG Q +W
Sbjct: 118 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 177
Query: 198 LVRNSWGPIGPDEGFF 213
+++NSWG ++G+
Sbjct: 178 IIKNSWGENWGNKGYI 193
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 5/129 (3%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
G++SE YPY G++ C Y+ + K G + + +K+ + + GP+SV ++
Sbjct: 80 GIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAID 136
Query: 61 SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
+ L + DE+C+ +L HAVL VGYG+ +W+++NSWG G+ K+
Sbjct: 137 ASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESKGNKHWIIKNSWGENWGMGGYIKM 196
Query: 121 ERG-NNACG 128
R NNACG
Sbjct: 197 ARNKNNACG 205
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 197
+ +K+ + + GP+SV +++ L F + DE+C+ +L HAVL VGYG+ +W
Sbjct: 119 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESKGNKHW 178
Query: 198 LVRNSWGPIGPDEGFFKIEH 217
+++NSWG G+ K+
Sbjct: 179 IIKNSWGENWGMGGYIKMAR 198
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 17/154 (11%)
Query: 2 GLESEKDYPYKNANGE------KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPL 55
G+ SE DYPYK +G+ + K D V++ + + S +L + P+
Sbjct: 81 GIASEADYPYKARDGKCKANEIQDKVTIDNYGVQILSNESTESEAESSLQSFVLEQ--PI 138
Query: 56 SVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDE 115
SV +++ H Y+G I SPY + H VL+VGYG +D + YW+ +NSWG +
Sbjct: 139 SVSIDAKDFHFYSGG-IYDGGNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGID 197
Query: 116 GFFKIER--GN--NACGKDFLH----FNGSETMK 141
G+ +I+R GN CG ++ SET+K
Sbjct: 198 GYIRIQRNTGNLLGVCGMNYFASYPIIEKSETLK 231
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 149 PLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGP 208
P+SV +++ HFY+G I SPY + H VL+VGYG +D + YW+ +NSWG
Sbjct: 137 PISVSIDAKDFHFYSGG-IYDGGNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWG 195
Query: 209 DEGFFKIEH 217
+G+ +I+
Sbjct: 196 IDGYIRIQR 204
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 5/129 (3%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
G++SE YPY G+ C Y+ + K G + +K+ + GP+SV ++
Sbjct: 80 GIDSEDAYPYV---GQDESCMYNPTGKAAKCRGYREIPEGNEAALKRAVAAVGPVSVAID 136
Query: 61 SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
+ L + DE CS L HAVL VGYG Q +W+++NSWG + G+ +
Sbjct: 137 ASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGIQAGNKHWIIKNSWGESWGNAGYILM 196
Query: 121 ERG-NNACG 128
R NNACG
Sbjct: 197 ARNKNNACG 205
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 12/108 (11%)
Query: 106 NSWGPIGPDEGFFKIERGNNACGKDFLHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGT 165
N G G+ +I GN A +K+ + GP+SV +++ L F +
Sbjct: 99 NPTGKAAKCRGYREIPEGNEA------------ALKRAVAAVGPVSVAIDASLTSFQFYS 146
Query: 166 PIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFF 213
DE CS L HAVL VGYG Q +W+++NSWG + G+
Sbjct: 147 AGVYYDENCSSDALNHAVLAVGYGIQAGNKHWIIKNSWGESWGNAGYI 194
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 10/131 (7%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSK-VKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
G+ SE YPY+ A G+ C +D S+ V +G L ++ + + GP++V ++
Sbjct: 195 GIMSESAYPYE-AQGDY--CRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAID 251
Query: 61 S-DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
+ D + Y+G D+TC+ DL H VL+VGYG + YW+++NSWG + G+++
Sbjct: 252 ATDELQFYSGGLFY--DQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWR 309
Query: 120 IER--GNNACG 128
R GNN CG
Sbjct: 310 QVRNYGNN-CG 319
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 139 TMKKILYKYGPLSVGLNS-HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 197
++ + + GP++V +++ + FY+G D+TC+ DL H VL+VGYG + YW
Sbjct: 235 SLADAVGQAGPVAVAIDATDELQFYSGGLFY--DQTCNQSDLNHGVLVVGYGSDNGQDYW 292
Query: 198 LVRNSWGPIGPDEGFFK 214
+++NSWG + G+++
Sbjct: 293 ILKNSWGSGWGESGYWR 309
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 5 SEKDYPYKNANGEKFKCAYDKSKV-KLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDL 63
+E YPY + G C V TG L + ++ + L GP++V +++
Sbjct: 85 TEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQ-IAAWLAVNGPVAVAVDASS 143
Query: 64 IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG 123
Y G + +C L H VLLVGY +PYW+++NSW +EG+ +I +G
Sbjct: 144 WMTYTGGVMT----SCVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKG 199
Query: 124 NNAC 127
+N C
Sbjct: 200 SNQC 203
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 140 MKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLV 199
+ L GP++V +++ Y G + +C L H VLLVGY +PYW++
Sbjct: 125 IAAWLAVNGPVAVAVDASSWMTYTGGVMT----SCVSEQLDHGVLLVGYNDSAAVPYWII 180
Query: 200 RNSWGPIGPDEGFFKI 215
+NSW +EG+ +I
Sbjct: 181 KNSWTTQWGEEGYIRI 196
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 5 SEKDYPYKNANGEKFKCAYDKSKV-KLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDL 63
+E YPY + G C V TG L + ++ + L GP++V +++
Sbjct: 85 TEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQ-IAAWLAVNGPVAVAVDASS 143
Query: 64 IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG 123
Y G + +C L H VLLVGY +PYW+++NSW +EG+ +I +G
Sbjct: 144 WMTYTGGVMT----SCVSEALDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKG 199
Query: 124 NNAC 127
+N C
Sbjct: 200 SNQC 203
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 140 MKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLV 199
+ L GP++V +++ Y G + +C L H VLLVGY +PYW++
Sbjct: 125 IAAWLAVNGPVAVAVDASSWMTYTGGVMT----SCVSEALDHGVLLVGYNDSAAVPYWII 180
Query: 200 RNSWGPIGPDEGFFKI 215
+NSW +EG+ +I
Sbjct: 181 KNSWTTQWGEEGYIRI 196
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 5 SEKDYPYKNANGEKFKCAYDKSKV-KLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDL 63
+E YPY + G C V TG L + ++ + L GP++V +++
Sbjct: 85 TEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQ-IAAWLAVNGPVAVAVDASS 143
Query: 64 IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG 123
Y G + +C L H VLLVGY +PYW+++NSW +EG+ +I +G
Sbjct: 144 WMTYTGGVMT----SCVSEQLDHGVLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKG 199
Query: 124 NNAC 127
+N C
Sbjct: 200 SNQC 203
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 140 MKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLV 199
+ L GP++V +++ Y G + +C L H VLLVGY +PYW++
Sbjct: 125 IAAWLAVNGPVAVAVDASSWMTYTGGVMT----SCVSEQLDHGVLLVGYNDGAAVPYWII 180
Query: 200 RNSWGPIGPDEGFFKI 215
+NSW +EG+ +I
Sbjct: 181 KNSWTTQWGEEGYIRI 196
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 5 SEKDYPYKNANGEKFKCAYDKSKV-KLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDL 63
+E YPY + G C V TG L + ++ + L GP++V +++
Sbjct: 85 TEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQ-IAAWLAVNGPVAVAVDASS 143
Query: 64 IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG 123
Y G + +C L H VLLVGY +PYW+++NSW +EG+ +I +G
Sbjct: 144 WMTYTGGVMT----SCVSEQLDHGVLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKG 199
Query: 124 NNAC 127
+N C
Sbjct: 200 SNQC 203
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 140 MKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLV 199
+ L GP++V +++ Y G + +C L H VLLVGY +PYW++
Sbjct: 125 IAAWLAVNGPVAVAVDASSWMTYTGGVMT----SCVSEQLDHGVLLVGYNDGAAVPYWII 180
Query: 200 RNSWGPIGPDEGFFKI 215
+NSW +EG+ +I
Sbjct: 181 KNSWTTQWGEEGYIRI 196
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 6/90 (6%)
Query: 45 MKKILYKYGPLSVL--LNSDLIHDYNGTPIRKN-DETCSPYDL-GHAVLLVGYGKQ--DD 98
MK L K+GP++V ++ D +H ++G + +P++L HAVLLVGYGK
Sbjct: 335 MKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTG 394
Query: 99 IPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
+ YW+V+NSWG + G+F+I RG + C
Sbjct: 395 LDYWIVKNSWGSQWGESGYFRIRRGTDECA 424
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 81/187 (43%), Gaps = 23/187 (12%)
Query: 50 YKYGPLSVL-LNSDLIHDYNGTPIRKNDE--TCSPY----DLGHAVLLVGYGKQD----- 97
Y + L +L ++ + + TPI E +CSPY D G L+ G QD
Sbjct: 234 YSFASLGMLEARIRILTNNSQTPILSPQEVVSCSPYAQGCDGGFPYLIAGKYAQDFGVVE 293
Query: 98 --DIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLHFNGSETMKKILYKYGPLSVGLN 155
PY P P E + F MK L K+GP++V
Sbjct: 294 ENCFPYTATD---APCKPKENCLRYYSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFE 350
Query: 156 SH--LIHFYNGTPIRKN-DETCSPYDL-GHAVLLVGYGKQ--DDIPYWLVRNSWGPIGPD 209
H +H+++G + +P++L HAVLLVGYGK + YW+V+NSWG +
Sbjct: 351 VHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGE 410
Query: 210 EGFFKIE 216
G+F+I
Sbjct: 411 SGYFRIR 417
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 13/135 (9%)
Query: 2 GLESEKDYPYKNANGEKFKCAYD-KSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
GL+SE+ YPY + C Y ++ V TG + + + K + GP+SV ++
Sbjct: 82 GLDSEESYPYVAVDE---ICKYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMD 138
Query: 61 S--DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPD 114
+ Y + D CS +L H VL+VGYG D+ YWLV+NSWGP
Sbjct: 139 AGHSSFQFYKSGIYFEPD--CSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGS 196
Query: 115 EGFFKIER-GNNACG 128
G+ KI + NN CG
Sbjct: 197 NGYVKIAKDKNNHCG 211
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 191
+ + K + GP+SV +++ FY + D CS +L H VL+VGYG
Sbjct: 121 KALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPD--CSSKNLDHGVLVVGYGFEGANS 178
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
D+ YWLV+NSWGP G+ KI +H
Sbjct: 179 DNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHC 210
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 13/135 (9%)
Query: 2 GLESEKDYPYKNANGEKFKCAYD-KSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
GL+SE+ YPY + C Y ++ V TG + + + K + GP+SV ++
Sbjct: 82 GLDSEESYPYVAVDE---ICKYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMD 138
Query: 61 S--DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPD 114
+ Y + D CS +L H VL+VGYG D+ YWLV+NSWGP
Sbjct: 139 AGHSSFQFYKSGIYFEPD--CSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGS 196
Query: 115 EGFFKIER-GNNACG 128
G+ KI + NN CG
Sbjct: 197 NGYVKIAKDKNNHCG 211
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 191
+ + K + GP+SV +++ FY + D CS +L H VL+VGYG
Sbjct: 121 KALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPD--CSSKNLDHGVLVVGYGFEGANS 178
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
D+ YWLV+NSWGP G+ KI +H
Sbjct: 179 DNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHC 210
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
G++S+ YPYK + KC YD SK + T + L + + +K+ + GP+SV +
Sbjct: 83 GIDSDASYPYKAMD---LKCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 60 NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
++ + + +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ +
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIR 197
Query: 120 IERGN-NACG 128
+ R N CG
Sbjct: 198 MARNKGNHCG 207
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
L + + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 174
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
+ YWLV+NSWG +EG+ ++ +H
Sbjct: 175 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHC 206
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
G++S+ YPYK + KC YD SK + T + L + + +K+ + GP+SV +
Sbjct: 181 GIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 236
Query: 60 NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
++ + + +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ +
Sbjct: 237 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIR 295
Query: 120 IERGN-NACG 128
+ R N CG
Sbjct: 296 MARNKGNHCG 305
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
L + + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG
Sbjct: 214 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 272
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSH 222
+ YWLV+NSWG +EG+ ++ +H
Sbjct: 273 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNH 303
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
G++S+ YPYK + KC YD SK + T + L + + +K+ + GP+SV +
Sbjct: 83 GIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 60 NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
++ + + +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ +
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIR 197
Query: 120 IERGN-NACG 128
+ R N CG
Sbjct: 198 MARNKGNHCG 207
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
L + + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 174
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
+ YWLV+NSWG +EG+ ++ +H
Sbjct: 175 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHC 206
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
G++S+ YPYK + KC YD SK + T + L + + +K+ + GP+SV +
Sbjct: 83 GIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 60 NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
++ + + +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ +
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIR 197
Query: 120 IERGN-NACG 128
+ R N CG
Sbjct: 198 MARNKGNHCG 207
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
L + + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 174
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
+ YWLV+NSWG +EG+ ++ +H
Sbjct: 175 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHC 206
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
G++S+ YPYK + KC YD SK + T + L + + +K+ + GP+SV +
Sbjct: 85 GIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 140
Query: 60 NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
++ + + +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ +
Sbjct: 141 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIR 199
Query: 120 IERGN-NACG 128
+ R N CG
Sbjct: 200 MARNKGNHCG 209
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
L + + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG
Sbjct: 118 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 176
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
+ YWLV+NSWG +EG+ ++ +H
Sbjct: 177 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHC 208
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
G++S+ YPYK + KC YD SK + T + L + + +K+ + GP+SV +
Sbjct: 84 GIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 139
Query: 60 NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
++ + + +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ +
Sbjct: 140 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIR 198
Query: 120 IERGN-NACG 128
+ R N CG
Sbjct: 199 MARNKGNHCG 208
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
L + + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG
Sbjct: 117 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 175
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
+ YWLV+NSWG +EG+ ++ +H
Sbjct: 176 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHC 207
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
G++S+ YPYK + KC YD SK + T + L + + +K+ + GP+SV +
Sbjct: 86 GIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 141
Query: 60 NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
++ + + +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ +
Sbjct: 142 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIR 200
Query: 120 IERGN-NACG 128
+ R N CG
Sbjct: 201 MARNKGNHCG 210
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
L + + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG
Sbjct: 119 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 177
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
+ YWLV+NSWG +EG+ ++ +H
Sbjct: 178 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHC 209
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
G++S+ YPYK + KC YD SK + T + L + + +K+ + GP+SV +
Sbjct: 83 GIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 60 NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
++ + + +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ +
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIR 197
Query: 120 IERGN-NACG 128
+ R N CG
Sbjct: 198 MARNKGNHCG 207
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
L + + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 174
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
+ YWLV+NSWG +EG+ ++ +H
Sbjct: 175 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHC 206
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
G++S+ YPYK + KC YD SK + T + L + + +K+ + GP+SV +
Sbjct: 84 GIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 139
Query: 60 NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
++ + + +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ +
Sbjct: 140 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIR 198
Query: 120 IERGN-NACG 128
+ R N CG
Sbjct: 199 MARNKGNHCG 208
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
L + + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG
Sbjct: 117 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 175
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
+ YWLV+NSWG +EG+ ++ +H
Sbjct: 176 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHC 207
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
G++S+ YPYK + KC YD SK + T + L + + +K+ + GP+SV +
Sbjct: 83 GIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 60 NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
++ + + +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ +
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIR 197
Query: 120 IERGN-NACG 128
+ R N CG
Sbjct: 198 MARNKGNHCG 207
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
L + + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 174
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
+ YWLV+NSWG +EG+ ++ +H
Sbjct: 175 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHC 206
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
G++S+ YPYK + KC YD SK + T + L + + +K+ + GP+SV +
Sbjct: 84 GIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 139
Query: 60 NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
++ + + +C+ ++ H VL+VGYG + YWLV+NSWG +EG+ +
Sbjct: 140 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIR 198
Query: 120 IERGN-NACG 128
+ R N CG
Sbjct: 199 MARNKGNHCG 208
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
L + + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG
Sbjct: 117 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 175
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
+ YWLV+NSWG +EG+ ++ +H
Sbjct: 176 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHC 207
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 9/98 (9%)
Query: 36 FLHFNGSETMKKIL---YKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLL 90
+ ++ S++ K+I+ YK GP+ + + SD + +G + + GHA+ +
Sbjct: 210 YTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMG----GHAIRI 265
Query: 91 VGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
+G+G ++ +PYWLV NSW D GFFKI RG N CG
Sbjct: 266 LGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCG 303
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 180 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
GHA+ ++G+G ++ +PYWLV NSW D GFFKI
Sbjct: 260 GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKI 295
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 9/98 (9%)
Query: 36 FLHFNGSETMKKIL---YKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLL 90
+ ++ S++ K+I+ YK GP+ + + SD + +G + + GHA+ +
Sbjct: 154 YTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMG----GHAIRI 209
Query: 91 VGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
+G+G ++ +PYWLV NSW D GFFKI RG N CG
Sbjct: 210 LGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCG 247
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 180 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
GHA+ ++G+G ++ +PYWLV NSW D GFFKI
Sbjct: 204 GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKI 239
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 9/98 (9%)
Query: 36 FLHFNGSETMKKIL---YKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLL 90
+ ++ S++ K+I+ YK GP+ + + SD + +G + + GHA+ +
Sbjct: 148 YTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMG----GHAIRI 203
Query: 91 VGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
+G+G ++ +PYWLV NSW D GFFKI RG N CG
Sbjct: 204 LGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCG 241
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 180 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
GHA+ ++G+G ++ +PYWLV NSW D GFFKI
Sbjct: 198 GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKI 233
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 8/130 (6%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
G++S+ YPYK + KC YD SK + T + + L + + +K+ + GP+SV +
Sbjct: 83 GIDSDASYPYKAMDQ---KCQYD-SKYRAATCRKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 60 NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
++ + + +C+ ++ H VL+VGYG + YWLV+NSWG ++G+ +
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIR 197
Query: 120 IERGN-NACG 128
+ R N CG
Sbjct: 198 MARNKGNHCG 207
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
L + + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 174
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
+ YWLV+NSWG ++G+ ++ +H
Sbjct: 175 NGKEYWLVKNSWGHNFGEKGYIRMARNKGNHC 206
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 11/132 (8%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
G+ +E++YPY +G+ D+ V + T ++ + N E + Y P+SV L++
Sbjct: 82 GINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNN--EWALQTAVTYQPVSVALDA 139
Query: 62 --DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
D Y T + HA+++VGYG + + YW+V+NSW +EG+ +
Sbjct: 140 AGDAFKQYASGIFTGPCGTA----VDHAIVIVGYGTEGGVDYWIVKNSWDTTWGEEGYMR 195
Query: 120 IER---GNNACG 128
I R G CG
Sbjct: 196 ILRNVGGAGTCG 207
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 181 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHLTHDIPGVPTH 233
HA+++VGYG + + YW+V+NSW +EG+ +I + T I +P++
Sbjct: 162 HAIVIVGYGTEGGVDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSY 214
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
G+ +E++YPY +GE C D K T + + +N ++ + Y P+SV L
Sbjct: 82 GINTEENYPYTAQDGE---CNVDLQNEKYVTIDTYENVPYNNEWALQTAV-TYQPVSVAL 137
Query: 60 NS--DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 117
++ D Y+ T + HAV +VGYG + I YW+V+NSW +EG+
Sbjct: 138 DAAGDAFKQYSSGIFTGPCGTA----IDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGY 193
Query: 118 FKIER---GNNACG 128
+I R G CG
Sbjct: 194 MRILRNVGGAGTCG 207
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 181 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHLTHDIPGVPTH 233
HAV +VGYG + I YW+V+NSW +EG+ +I + T I +P++
Sbjct: 162 HAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSY 214
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 15/134 (11%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
G+ +E +YPY E+ +C D + K + + + +N ++ + Y P+SV L
Sbjct: 82 GINTEANYPY---TAEEGQCNLDLQQEKYVSIDTYENVPYNNEWALQTAV-AYQPVSVAL 137
Query: 60 NSDLIHDYNGTPIRKNDET--CSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 117
+ YN T C + HAV +VGYG + I YW+V+NSWG +EG+
Sbjct: 138 EA---AGYNFQHYSSGIFTGPCGT-AVDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGY 193
Query: 118 FKIER---GNNACG 128
+I+R G CG
Sbjct: 194 MRIQRNVGGVGQCG 207
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 137 SETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPY 196
+E + Y P+SV L + +F + + + D HAV +VGYG + I Y
Sbjct: 120 NEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVD--HAVTIVGYGTEGGIDY 177
Query: 197 WLVRNSWGPIGPDEGFFKIEHTL 219
W+V+NSWG +EG+ +I+ +
Sbjct: 178 WIVKNSWGTTWGEEGYMRIQRNV 200
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 15/134 (11%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
G+ +E +YPY E+ +C D + K + + + +N ++ + Y P+SV L
Sbjct: 82 GINTEANYPY---TAEEGQCNLDLQQEKYVSIDTYENVPYNNEWALQTAV-AYQPVSVAL 137
Query: 60 NSDLIHDYNGTPIRKNDET--CSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 117
+ YN T C + HAV +VGYG + I YW+V+NSWG +EG+
Sbjct: 138 EA---AGYNFQHYSSGIFTGPCGT-AVDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGY 193
Query: 118 FKIER---GNNACG 128
+I+R G CG
Sbjct: 194 MRIQRNVGGVGQCG 207
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 137 SETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPY 196
+E + Y P+SV L + +F + + + D HAV +VGYG + I Y
Sbjct: 120 NEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVD--HAVTIVGYGTEGGIDY 177
Query: 197 WLVRNSWGPIGPDEGFFKIEHTL 219
W+V+NSWG +EG+ +I+ +
Sbjct: 178 WIVKNSWGTTWGEEGYMRIQRNV 200
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
G++S+ YPYK + KC YD S + T + + L + + +K+ + GP+SV +
Sbjct: 83 GIDSDASYPYKAMDQ---KCQYD-SAYRAATCRKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 60 NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
++ + + +C+ ++ H VL+VGYG + YWLV+NSWG ++G+ +
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIR 197
Query: 120 IERGN-NACG 128
+ R N CG
Sbjct: 198 MARNKGNHCG 207
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
L + + +K+ + GP+SVG+++ F+ + +C+ ++ H VL+VGYG
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 174
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
+ YWLV+NSWG ++G+ ++ +H
Sbjct: 175 NGKEYWLVKNSWGHNFGEKGYIRMARNKGNHC 206
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 24/144 (16%)
Query: 1 MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNG-------SETMKKILYKYG 53
GL E +PY G C + + ++ + H+ G MK L +G
Sbjct: 290 FGLVEEACFPY---TGTDSPCKMKEDCFRYYSSE--YHYVGGFYGGCNEALMKLELVHHG 344
Query: 54 PLSVLLN--SDLIH----DYNGTPIRKNDETCSPYDL-GHAVLLVGYG--KQDDIPYWLV 104
P++V D +H Y+ T +R + +P++L HAVLLVGYG + YW+V
Sbjct: 345 PMAVAFEVYDDFLHYKKGIYHHTGLR---DPFNPFELTNHAVLLVGYGTDSASGMDYWIV 401
Query: 105 RNSWGPIGPDEGFFKIERGNNACG 128
+NSWG + G+F+I RG + C
Sbjct: 402 KNSWGTGWGENGYFRIRRGTDECA 425
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 12/87 (13%)
Query: 140 MKKILYKYGPLSVGLNSH--LIHF----YNGTPIRKNDETCSPYDL-GHAVLLVGYG--K 190
MK L +GP++V + +H+ Y+ T +R + +P++L HAVLLVGYG
Sbjct: 336 MKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLR---DPFNPFELTNHAVLLVGYGTDS 392
Query: 191 QDDIPYWLVRNSWGPIGPDEGFFKIEH 217
+ YW+V+NSWG + G+F+I
Sbjct: 393 ASGMDYWIVKNSWGTGWGENGYFRIRR 419
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 29 KLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDLIHDYNGTPIRKNDETCSPYDLGH 86
K F + N + + +YK GP+ + SD + +G + E GH
Sbjct: 144 KHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMG----GH 199
Query: 87 AVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
A+ ++G+G ++ PYWLV NSW D GFFKI RG + CG
Sbjct: 200 AIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCG 241
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 126 ACGKDFLHFNGSETMKKILYKYGPL--SVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAV 183
C + N E M +I YK GP+ + + S + + +G + E GHA+
Sbjct: 147 GCSSYSVANNEKEIMAEI-YKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMG----GHAI 201
Query: 184 LLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
++G+G ++ PYWLV NSW D GFFKI
Sbjct: 202 RILGWGVENGTPYWLVANSWNTDWGDNGFFKI 233
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 85 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CG
Sbjct: 261 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCG 304
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 180 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
GHA+ ++G+G ++ PYWLV NSW D GFFKI
Sbjct: 261 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKI 296
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 29 KLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDLIHDYNGTPIRKNDETCSPYDLGH 86
K F + N + + +YK GP+ + SD + +G + E GH
Sbjct: 96 KHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMG----GH 151
Query: 87 AVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
A+ ++G+G ++ PYWLV NSW D GFFKI RG + CG
Sbjct: 152 AIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCG 193
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 126 ACGKDFLHFNGSETMKKILYKYGPL--SVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAV 183
C + N E M +I YK GP+ + + S + + +G + E GHA+
Sbjct: 99 GCSSYSVANNEKEIMAEI-YKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMG----GHAI 153
Query: 184 LLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
++G+G ++ PYWLV NSW D GFFKI
Sbjct: 154 RILGWGVENGTPYWLVGNSWNTDWGDNGFFKI 185
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 85 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CG
Sbjct: 204 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCG 247
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 180 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
GHA+ ++G+G ++ PYWLV NSW D GFFKI
Sbjct: 204 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKI 239
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
GL+SE+ YPY+ + C Y+ K + F+ E + K + GP+SV ++
Sbjct: 82 GLDSEESYPYE---ATEESCKYNP-KYSVANDAGFVDIPKQEKALMKAVATVGPISVAID 137
Query: 61 S---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGP 113
+ + G + CS D+ H VL+VGYG + DD YWLV+NSWG
Sbjct: 138 AGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFESTESDDNKYWLVKNSWGEEWG 194
Query: 114 DEGFFKIERG-NNACG 128
G+ K+ + N CG
Sbjct: 195 MGGYVKMAKDRRNHCG 210
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 191
+ + K + GP+SV +++ FY + D CS D+ H VL+VGYG +
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFESTES 177
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
DD YWLV+NSWG G+ K+ R+H
Sbjct: 178 DDNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 209
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 29 KLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDLIHDYNGTPIRKNDETCSPYDLGH 86
K F + N + + +YK GP+ + SD + +G + E GH
Sbjct: 144 KHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMG----GH 199
Query: 87 AVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
A+ ++G+G ++ PYWLV NSW D GFFKI RG + CG
Sbjct: 200 AIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCG 241
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 126 ACGKDFLHFNGSETMKKILYKYGPL--SVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAV 183
C + N E M +I YK GP+ + + S + + +G + E GHA+
Sbjct: 147 GCSSYSVANNEKEIMAEI-YKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMG----GHAI 201
Query: 184 LLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
++G+G ++ PYWLV NSW D GFFKI
Sbjct: 202 RILGWGVENGTPYWLVGNSWNTDWGDNGFFKI 233
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 85 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CG
Sbjct: 200 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCG 243
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 180 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
GHA+ ++G+G ++ PYWLV NSW D GFFKI
Sbjct: 200 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKI 235
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 85 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CG
Sbjct: 199 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCG 242
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 180 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
GHA+ ++G+G ++ PYWLV NSW D GFFKI
Sbjct: 199 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKI 234
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 12 KNANGEKFKCAYDKSKVKLFTGKDFLHF-NGSETMKKILYKYGPLSV--LLNSDLIHDYN 68
K +K+K Y + K + GK + N + ++K + KYGP+ + D ++ +
Sbjct: 131 KQTCQKKYKTPYTQDKHR---GKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYEDFLNYKS 187
Query: 69 GTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNAC 127
G ET GHA+ ++G+G ++ PYWL+ NSW + G+F+I RG + C
Sbjct: 188 GIYKHITGETLG----GHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVRGRDEC 242
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 135 NGSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 192
N + ++K + KYGP+ G + +++ +G ET GHA+ ++G+G ++
Sbjct: 157 NDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSGIYKHITGETLG----GHAIRIIGWGVEN 212
Query: 193 DIPYWLVRNSWGPIGPDEGFFKI-----EHTLRSHLT 224
PYWL+ NSW + G+F+I E ++ S +T
Sbjct: 213 KAPYWLIANSWNEDWGENGYFRIVRGRDECSIESEVT 249
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 85 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CG
Sbjct: 198 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCG 241
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 180 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
GHA+ ++G+G ++ PYWLV NSW D GFFKI
Sbjct: 198 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKI 233
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 85 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
GHA+ ++G+G ++ PYWLV NSW D GFFKI RG + CG
Sbjct: 149 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCG 192
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 180 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
GHA+ ++G+G ++ PYWLV NSW D GFFKI
Sbjct: 149 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKI 184
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
GL+SE+ YPY+ + C Y+ K + F+ E + K + GP+SV ++
Sbjct: 178 GLDSEESYPYE---ATEESCKYN-PKYSVANDAGFVDIPKQEKALMKAVATVGPISVAID 233
Query: 61 S---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGP 113
+ + G + CS D+ H VL+VGYG + D+ YWLV+NSWG
Sbjct: 234 AGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWG 290
Query: 114 DEGFFKIERG-NNACG 128
G+ K+ + N CG
Sbjct: 291 MGGYVKMAKDRRNHCG 306
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 191
+ + K + GP+SV +++ FY + D CS D+ H VL+VGYG +
Sbjct: 216 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFESTES 273
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSH 222
D+ YWLV+NSWG G+ K+ R+H
Sbjct: 274 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRNH 304
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 13/135 (9%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
G+++E +YPYK G C K V++ K N + + + +++ +S
Sbjct: 80 GIDTEANYPYKAFQGP---CRAAKKVVRIDGCKGVPQCNENALKNAVASQPSVVAIDASS 136
Query: 62 DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIE 121
Y G T L H V++VGYGK YW+VRNSWG ++G+ +++
Sbjct: 137 KQFQHYKGGIFTGPCGT----KLNHGVVIVGYGKD----YWIVRNSWGRHWGEQGYTRMK 188
Query: 122 R--GNNACGKDFLHF 134
R G CG L F
Sbjct: 189 RVGGCGLCGIARLPF 203
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 179 LGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHT 218
L H V++VGYGK YW+VRNSWG ++G+ +++
Sbjct: 155 LNHGVVIVGYGKD----YWIVRNSWGRHWGEQGYTRMKRV 190
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 18 KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSV-LLNSDLIHDYNGTPIRKND 76
+FK + L+ D+ +G E M +Y GP+S ++ ++ + +Y G +
Sbjct: 149 EFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQ 208
Query: 77 ETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
+T + H V + G+G D YW+VRNSWG + G+ +I
Sbjct: 209 DTTY---INHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 249
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 130 DFLHFNGSETMKKILYKYGPLSVGL--NSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVG 187
D+ +G E M +Y GP+S G+ L ++ G D T + H V + G
Sbjct: 166 DYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTT----YINHVVSVAG 221
Query: 188 YGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
+G D YW+VRNSWG + G+ +I
Sbjct: 222 WGISDGTEYWIVRNSWGEPWGERGWLRI 249
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 130 DFLHFNGSETMKKILYKYGPLSVGL--NSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVG 187
D+ +G E M +Y GP+S G+ L ++ G D T + H V + G
Sbjct: 131 DYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTT----YINHVVSVAG 186
Query: 188 YGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
+G D YW+VRNSWG + G+ +I
Sbjct: 187 WGISDGTEYWIVRNSWGEPWGERGWLRI 214
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 18 KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSV-LLNSDLIHDYNGTPIRKND 76
+FK + L+ D+ +G E M +Y GP+S ++ ++ + +Y G +
Sbjct: 114 EFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQ 173
Query: 77 ETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
+T + H V + G+G D YW+VRNSWG + G+ +I
Sbjct: 174 DTTY---INHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 214
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
GL+SE+ YPY+ + C Y+ K + F+ E + K + GP+SV ++
Sbjct: 82 GLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAID 137
Query: 61 S---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGP 113
+ + G + CS D+ H VL+VGYG + D+ YWLV+NSWG
Sbjct: 138 AGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWG 194
Query: 114 DEGFFKIERG-NNACG 128
G+ K+ + N CG
Sbjct: 195 MGGYVKMAKDRRNHCG 210
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 191
+ + K + GP+SV +++ FY + D CS D+ H VL+VGYG +
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFESTES 177
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
D+ YWLV+NSWG G+ K+ R+H
Sbjct: 178 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 209
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
GL+SE+ YPY+ + C Y+ K + F+ E + K + GP+SV ++
Sbjct: 82 GLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAID 137
Query: 61 S---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGP 113
+ + G + CS D+ H VL+VGYG + D+ YWLV+NSWG
Sbjct: 138 AGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWG 194
Query: 114 DEGFFKIERG-NNACG 128
G+ K+ + N CG
Sbjct: 195 MGGYVKMAKDRRNHCG 210
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 191
+ + K + GP+SV +++ FY + D CS D+ H VL+VGYG +
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFESTES 177
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
D+ YWLV+NSWG G+ K+ R+H
Sbjct: 178 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 209
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
GL+SE+ YPY+ + C Y+ K + F+ E + K + GP+SV ++
Sbjct: 83 GLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAID 138
Query: 61 S---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGP 113
+ + G + CS D+ H VL+VGYG + D+ YWLV+NSWG
Sbjct: 139 AGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWG 195
Query: 114 DEGFFKIERG-NNACG 128
G+ K+ + N CG
Sbjct: 196 MGGYVKMAKDRRNHCG 211
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 191
+ + K + GP+SV +++ FY + D CS D+ H VL+VGYG +
Sbjct: 121 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFESTES 178
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
D+ YWLV+NSWG G+ K+ R+H
Sbjct: 179 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 210
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
GL+SE+ YPY+ + C Y+ K + F+ E + K + GP+SV ++
Sbjct: 83 GLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAID 138
Query: 61 S---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGP 113
+ + G + CS D+ H VL+VGYG + D+ YWLV+NSWG
Sbjct: 139 AGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWG 195
Query: 114 DEGFFKIERG-NNACG 128
G+ K+ + N CG
Sbjct: 196 MGGYVKMAKDRRNHCG 211
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 191
+ + K + GP+SV +++ FY + D CS D+ H VL+VGYG +
Sbjct: 121 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFESTES 178
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
D+ YWLV+NSWG G+ K+ R+H
Sbjct: 179 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 210
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
GL+SE+ YPY+ + C Y+ K + F+ E + K + GP+SV ++
Sbjct: 120 GLDSEESYPYE---ATEESCKYN-PKYSVANDAGFVDIPKQEKALMKAVATVGPISVAID 175
Query: 61 S---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGP 113
+ + G + CS D+ H VL+VGYG + D+ YWLV+NSWG
Sbjct: 176 AGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWG 232
Query: 114 DEGFFKIERG-NNACG 128
G+ K+ + N CG
Sbjct: 233 MGGYVKMAKDRRNHCG 248
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 191
+ + K + GP+SV +++ FY + D CS D+ H VL+VGYG +
Sbjct: 158 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFESTES 215
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
D+ YWLV+NSWG G+ K+ R+H
Sbjct: 216 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 247
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
GL+SE+ YPY+ + C Y+ K + F+ E + K + GP+SV ++
Sbjct: 82 GLDSEESYPYE---ATEESCKYNP-KYSVANDAGFVDIPKQEKALMKAVATVGPISVAID 137
Query: 61 S---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGP 113
+ + G + CS D+ H VL+VGYG + D+ YWLV+NSWG
Sbjct: 138 AGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWG 194
Query: 114 DEGFFKIERG-NNACG 128
G+ K+ + N CG
Sbjct: 195 MGGYVKMAKDRRNHCG 210
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 191
+ + K + GP+SV +++ FY + D CS D+ H VL+VGYG +
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFESTES 177
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
D+ YWLV+NSWG G+ K+ R+H
Sbjct: 178 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 209
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
GL+SE+ YPY+ + C Y+ K + F+ E + K + GP+SV ++
Sbjct: 82 GLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAID 137
Query: 61 S---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGP 113
+ + G + CS D+ H VL+VGYG + D+ YWLV+NSWG
Sbjct: 138 AGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWG 194
Query: 114 DEGFFKIERG-NNACG 128
G+ K+ + N CG
Sbjct: 195 MGGYVKMAKDRRNHCG 210
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 191
+ + K + GP+SV +++ FY + D CS D+ H VL+VGYG +
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFESTES 177
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
D+ YWLV+NSWG G+ K+ R+H
Sbjct: 178 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 209
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
G+++E +YPYK G C K V++ K H N + K + + +++ +S
Sbjct: 80 GIDTEANYPYKAVQGP---CRAAKKVVRIDGYKGVPHCNENALKKAVASQPSVVAIDASS 136
Query: 62 DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIE 121
Y T L H V++VGY K YW+VRNSWG ++G+ +++
Sbjct: 137 KQFQHYKSGIFSGPCGT----KLNHGVVIVGYWKD----YWIVRNSWGRYWGEQGYIRMK 188
Query: 122 R--GNNACG 128
R G CG
Sbjct: 189 RVGGCGLCG 197
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 179 LGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHT 218
L H V++VGY K YW+VRNSWG ++G+ +++
Sbjct: 155 LNHGVVIVGYWKD----YWIVRNSWGRYWGEQGYIRMKRV 190
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 10 PYKNANGEKFKCAY--DKSKVKLFTGKDFLHF--NGSETMKKILYKYGPLSVLLNSDLIH 65
P N + KC Y D + + + + + G + + L+ GP V D+
Sbjct: 204 PCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAF--DVYE 261
Query: 66 DYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNN 125
D+ Y GHAV LVG+G + +PYW + NSW +G+F I RG++
Sbjct: 262 DFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSS 321
Query: 126 ACG 128
CG
Sbjct: 322 ECG 324
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 180 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEH 217
GHAV LVG+G + +PYW + NSW +G+F I
Sbjct: 281 GHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRR 318
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
GL+SE+ YPY+ + C Y+ K + F+ E + K + GP+SV ++
Sbjct: 174 GLDSEESYPYE---ATEESCKYN-PKYSVANDAGFVDIPKQEKALMKAVATVGPISVAID 229
Query: 61 S---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGP 113
+ + G + CS D+ H VL+VGYG + D YWLV+NSWG
Sbjct: 230 AGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWG 286
Query: 114 DEGFFKIERG-NNACG 128
G+ K+ + N CG
Sbjct: 287 MGGYVKMAKDRRNHCG 302
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 191
+ + K + GP+SV +++ FY + D CS D+ H VL+VGYG +
Sbjct: 212 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFESTES 269
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSH 222
D YWLV+NSWG G+ K+ R+H
Sbjct: 270 DGNKYWLVKNSWGEEWGMGGYVKMAKDRRNH 300
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 10 PYKNANGEKFKCAY--DKSKVKLFTGKDFLHF--NGSETMKKILYKYGPLSVLLNSDLIH 65
P N + KC Y D + + + + + G + + L+ GP V D+
Sbjct: 181 PCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAF--DVYE 238
Query: 66 DYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNN 125
D+ Y GHAV LVG+G + +PYW + NSW +G+F I RG++
Sbjct: 239 DFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSS 298
Query: 126 ACG 128
CG
Sbjct: 299 ECG 301
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 180 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEH 217
GHAV LVG+G + +PYW + NSW +G+F I
Sbjct: 258 GHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRR 295
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 10 PYKNANGEKFKCAY--DKSKVKLFTGKDFLHF--NGSETMKKILYKYGPLSVLLNSDLIH 65
P N + KC Y D + + + + + G + + L+ GP V D+
Sbjct: 182 PCSQFNFDTPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAF--DVYE 239
Query: 66 DYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNN 125
D+ Y GHAV LVG+G + +PYW + NSW +G+F I RG++
Sbjct: 240 DFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSS 299
Query: 126 ACG 128
CG
Sbjct: 300 ECG 302
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 180 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEH 217
GHAV LVG+G + +PYW + NSW +G+F I
Sbjct: 259 GHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRR 296
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 2 GLESEKDYPYKNANG--EKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLL 59
GL +E YPY+ A G + A + V G + N E + + + P+SV +
Sbjct: 84 GLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVANQ-PVSVAV 142
Query: 60 NSD--LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-KQDDIPYWLVRNSWGPIGPDEG 116
+ Y+ T +L H V +VGYG +D YW V+NSWGP ++G
Sbjct: 143 EASGKAFMFYSEGVFTGECGT----ELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQG 198
Query: 117 FFKIERGNNACG 128
+ ++E+ + A G
Sbjct: 199 YIRVEKDSGASG 210
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 178 DLGHAVLLVGYG-KQDDIPYWLVRNSWGPIGPDEGFFKIE 216
+L H V +VGYG +D YW V+NSWGP ++G+ ++E
Sbjct: 164 ELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVE 203
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 14/125 (11%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
G++++++YPY G C + +V G + N ++ + P+SV + +
Sbjct: 80 GIDTQQNYPYSAVQGS---CKPYRLRVVSINGFQRVTRNNESALQSAVASQ-PVSVTVEA 135
Query: 62 DLIHDYNGTPIRKNDETCSPYDLG----HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 117
G P + G H V++VGYG Q YW+VRNSWG ++G+
Sbjct: 136 A------GAPFQHYSSGIFTGPCGTAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGY 189
Query: 118 FKIER 122
+ER
Sbjct: 190 IWMER 194
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 181 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL----THDIPGVPT 232
H V++VGYG Q YW+VRNSWG ++G+ +E + S +P PT
Sbjct: 158 HGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 80 SPYDL-GHAVLLVGYG--KQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
+P++L HAVLLVGYG + YW+V+NSWG + G+F+I RG + C
Sbjct: 4 NPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECA 55
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 175 SPYDL-GHAVLLVGYG--KQDDIPYWLVRNSWGPIGPDEGFFKIEH 217
+P++L HAVLLVGYG + YW+V+NSWG + G+F+I
Sbjct: 4 NPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRR 49
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 7/127 (5%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
G+ S+ +YPY +G C +K G + + S + + + +++ +S
Sbjct: 80 GIASDANYPYTGVDG---TCDLNKPIAARIDGYTNVPNSSSALLDAVAKQPVSVNIYTSS 136
Query: 62 DLIHDYNGTPIRKNDETCS--PYDLGHAVLLVGYGKQ-DDIPYWLVRNSWGPIGPDEGFF 118
Y G I +CS P + H VL+VGYG + YW+V+NSWG +G+
Sbjct: 137 TSFQLYTGPGIFAG-SSCSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYI 195
Query: 119 KIERGNN 125
I R N
Sbjct: 196 LIRRNTN 202
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 135 NGSETMKKILYKYGPLSVGL--NSHLIHFYNGTPIRKNDETCS--PYDLGHAVLLVGYGK 190
N S + + K P+SV + +S Y G I +CS P + H VL+VGYG
Sbjct: 114 NSSSALLDAVAKQ-PVSVNIYTSSTSFQLYTGPGIFAG-SSCSDDPATVDHTVLIVGYGS 171
Query: 191 Q-DDIPYWLVRNSWGPIGPDEGFFKIEH 217
+ YW+V+NSWG +G+ I
Sbjct: 172 NGTNADYWIVKNSWGTEWGIDGYILIRR 199
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 73 RKNDETCSPYDLGHAVLLVGYG-----KQDDIPYWLVRNSWGPIGPDEGFFKIER-GNNA 126
+K C HAV +VGYG + + YW+VRNSWGP DEG+FK++ G
Sbjct: 186 KKVQNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTH 245
Query: 127 CGKDFLH 133
C +F+H
Sbjct: 246 CHFNFIH 252
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 168 RKNDETCSPYDLGHAVLLVGYG-----KQDDIPYWLVRNSWGPIGPDEGFFKIE 216
+K C HAV +VGYG + + YW+VRNSWGP DEG+FK++
Sbjct: 186 KKVQNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVD 239
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 73 RKNDETCSPYDLGHAVLLVGYG-----KQDDIPYWLVRNSWGPIGPDEGFFKIER-GNNA 126
+K C HAV +VGYG + + YW+VRNSWGP DEG+FK++ G
Sbjct: 187 KKVKNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTH 246
Query: 127 CGKDFLH 133
C +F+H
Sbjct: 247 CHFNFIH 253
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 168 RKNDETCSPYDLGHAVLLVGYG-----KQDDIPYWLVRNSWGPIGPDEGFFKIE 216
+K C HAV +VGYG + + YW+VRNSWGP DEG+FK++
Sbjct: 187 KKVKNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVD 240
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 19/130 (14%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFT--GKDFLHFNGSETMKKILYKYGPLSVLL 59
G+ +E +YPY+ +G C K + G + + N + K + P+SV +
Sbjct: 82 GITTEANYPYEAYDG---TCDVSKENAPAVSIDGHENVPENDENALLKAVANQ-PVSVAI 137
Query: 60 NSDLIHDYNGTPIRKNDE-----TCSPYDLGHAVLLVGYGKQ-DDIPYWLVRNSWGPIGP 113
D G+ + E +C +L H V +VGYG D YW V+NSWGP
Sbjct: 138 ------DAGGSDFQFYSEGVFTGSCGT-ELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWG 190
Query: 114 DEGFFKIERG 123
++G+ ++ERG
Sbjct: 191 EKGYIRMERG 200
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 178 DLGHAVLLVGYGKQ-DDIPYWLVRNSWGPIGPDEGFFKIEHTL 219
+L H V +VGYG D YW V+NSWGP ++G+ ++E +
Sbjct: 159 ELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGI 201
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 20/129 (15%)
Query: 2 GLESEKDYPYKNANGEKFKC-AYDKS--KVKLFTGKDFLHFNGSETMKKILYKYGPLSVL 58
G+ + K YPY+ +++KC A DK KVK+ TG + N + L PLSVL
Sbjct: 79 GVHTSKVYPYQ---AKQYKCRATDKPGPKVKI-TGYKRVPSNXETSFLGALANQ-PLSVL 133
Query: 59 LNSDLIHDYNGTPIRKN-----DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGP 113
+ + G P + D C L HAV VGYG D Y +++NSWGP
Sbjct: 134 VEA------GGKPFQLYKSGVFDGPCGT-KLDHAVTAVGYGTSDGKNYIIIKNSWGPNWG 186
Query: 114 DEGFFKIER 122
++G+ +++R
Sbjct: 187 EKGYMRLKR 195
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 179 LGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEH 217
L HAV VGYG D Y +++NSWGP ++G+ +++
Sbjct: 157 LDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKR 195
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
G+ SE+ YPY+ +G + V + + ++ N K + + P+SV +++
Sbjct: 82 GINSEETYPYRGQDG-ICNSTVNAPVVSIDSYENVPSHNEQSLQKAVANQ--PVSVTMDA 138
Query: 62 DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIE 121
D+ +C+ HA+ +VGYG ++D +W+V+NSWG + G+ + E
Sbjct: 139 -AGRDFQLYRSGIFTGSCN-ISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAE 196
Query: 122 R 122
R
Sbjct: 197 R 197
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 181 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTLRS 221
HA+ +VGYG ++D +W+V+NSWG + G+ + E + +
Sbjct: 161 HALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIEN 201
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 17/115 (14%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
G+ SE YPY A E+ + + VK+ KD SE K P+S+ + +
Sbjct: 88 GICSEDAYPYL-ARDEECRAQSCEKVVKILGFKDVPRR--SEAAMKAALAKSPVSIAIEA 144
Query: 62 DLIHDYNGTPIR-----KNDETCSPYDLGHAVLLVGYG--KQDDIPYWLVRNSWG 109
D + P + D +C DL H VLLVGYG K+ +W+++NSWG
Sbjct: 145 DQM------PFQFYHEGVFDASCGT-DLDHGVLLVGYGTDKESKKDFWIMKNSWG 192
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 137 SETMKKILYKYGPLSVGLNSHLI--HFYNGTPIRKNDETCSPYDLGHAVLLVGYG--KQD 192
SE K P+S+ + + + FY+ D +C DL H VLLVGYG K+
Sbjct: 125 SEAAMKAALAKSPVSIAIEADQMPFQFYHEGVF---DASCGT-DLDHGVLLVGYGTDKES 180
Query: 193 DIPYWLVRNSWG 204
+W+++NSWG
Sbjct: 181 KKDFWIMKNSWG 192
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 24/131 (18%)
Query: 2 GLESEKDYPYKNANGEKFKC-AYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLSVLL 59
G+ +E++YPY+ G +C A DK K++ TG ++ N ++ + + P+SV+
Sbjct: 79 GVHTEREYPYEKKQG---RCRAKDKKGPKVYITGYKYVPANDEISLIQAIANQ-PVSVVT 134
Query: 60 NSDL--IHDYNGT----PIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGP 113
+S Y G P N + HAV VGYGK Y L++NSWGP
Sbjct: 135 DSRGRGFQFYKGGIYEGPCGTNTD--------HAVTAVGYGKT----YLLLKNSWGPNWG 182
Query: 114 DEGFFKIERGN 124
++G+ +I+R +
Sbjct: 183 EKGYIRIKRAS 193
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 181 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHT 218
HAV VGYGK Y L++NSWGP ++G+ +I+
Sbjct: 159 HAVTAVGYGKT----YLLLKNSWGPNWGEKGYIRIKRA 192
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 15/136 (11%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKK-ILYKYGPLSVLLN 60
G++++ +YPYK G SKV G + + F +K+ + + +++ +
Sbjct: 80 GIDTQANYPYKAVQGP----CQAASKVVSIDGYNGVPFCNEXALKQAVAVQPSTVAIDAS 135
Query: 61 SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
S Y+ T L H V +VGY YW+VRNSWG ++G+ ++
Sbjct: 136 SAQFQQYSSGIFSGPCGT----KLNHGVTIVGY----QANYWIVRNSWGRYWGEKGYIRM 187
Query: 121 ER--GNNACGKDFLHF 134
R G CG L +
Sbjct: 188 LRVGGCGLCGIARLPY 203
Score = 33.5 bits (75), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 179 LGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
L H V +VGY YW+VRNSWG ++G+ ++
Sbjct: 155 LNHGVTIVGY----QANYWIVRNSWGRYWGEKGYIRM 187
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 67 YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNN 125
Y+G I ++D P HAV +VGYG YW+VRNSW D G+ + GNN
Sbjct: 154 YDGRTIIQHDNGYQPNY--HAVNIVGYGSTQGDDYWIVRNSWDTTWGDSGYGYFQAGNN 210
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 162 YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 212
Y+G I ++D P HAV +VGYG YW+VRNSW D G+
Sbjct: 154 YDGRTIIQHDNGYQPNY--HAVNIVGYGSTQGDDYWIVRNSWDTTWGDSGY 202
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 13/133 (9%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
GL+SE+ YPY+ + C Y+ K + F+ E + K + GP+SV ++
Sbjct: 82 GLDSEESYPYE---ATEESCKYNP-KYSVANDVGFVDIPKQEKALMKAVATVGPISVAID 137
Query: 61 S---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-KQDDIPYWLVRNSWGPIGPDEG 116
+ + G + + L HA+L+VGYG ++ YWLV+NSWG G
Sbjct: 138 AGHESFLFYKEGIYFSSDCSS---SSLNHAMLVVGYGFISNNQKYWLVKNSWGEEWGMGG 194
Query: 117 FFKIERG-NNACG 128
+ K+ + N CG
Sbjct: 195 YVKMAKDRRNHCG 207
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 138 ETMKKILYKYGPLSVGLNS---HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG-KQDD 193
+ + K + GP+SV +++ + + G + + L HA+L+VGYG ++
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSS---SSLNHAMLVVGYGFISNN 176
Query: 194 IPYWLVRNSWGPIGPDEGFFKIEHTLRSH 222
YWLV+NSWG G+ K+ R+H
Sbjct: 177 QKYWLVKNSWGEEWGMGGYVKMAKDRRNH 205
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 40 NGSETMKKILYKYGPLSVLL---NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 96
N ++ + + + ++V++ + D Y+G I + D P HAV +VGY
Sbjct: 203 NANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPN--YHAVNIVGYSNA 260
Query: 97 DDIPYWLVRNSWGPIGPDEGF 117
+ YW+VRNSW D G+
Sbjct: 261 QGVDYWIVRNSWDTNWGDNGY 281
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 162 YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 212
Y+G I + D P HAV +VGY + YW+VRNSW D G+
Sbjct: 233 YDGRTIIQRDNGYQPN--YHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 281
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 40 NGSETMKKILYKYGPLSVLL---NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 96
N ++ + + + ++V++ + D Y+G I + D P HAV +VGY
Sbjct: 123 NANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY--HAVNIVGYSNA 180
Query: 97 DDIPYWLVRNSWGPIGPDEGF 117
+ YW+VRNSW D G+
Sbjct: 181 QGVDYWIVRNSWDTNWGDNGY 201
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 162 YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 212
Y+G I + D P HAV +VGY + YW+VRNSW D G+
Sbjct: 153 YDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 40 NGSETMKKILYKYGPLSVLL---NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 96
N ++ + + + ++V++ + D Y+G I + D P HAV +VGY
Sbjct: 123 NANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY--HAVNIVGYSNA 180
Query: 97 DDIPYWLVRNSWGPIGPDEGF 117
+ YW+VRNSW D G+
Sbjct: 181 QGVDYWIVRNSWDTNWGDNGY 201
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 162 YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 212
Y+G I + D P HAV +VGY + YW+VRNSW D G+
Sbjct: 153 YDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 40 NGSETMKKILYKYGPLSVLL---NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 96
N ++ + + + ++V++ + D Y+G I + D P HAV +VGY
Sbjct: 123 NVNKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY--HAVNIVGYSNA 180
Query: 97 DDIPYWLVRNSWGPIGPDEGF 117
+ YW+VRNSW D G+
Sbjct: 181 QGVDYWIVRNSWDTNWGDNGY 201
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 162 YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 212
Y+G I + D P HAV +VGY + YW+VRNSW D G+
Sbjct: 153 YDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 140 MKKILYKYGPLSVGLN-SHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIP--- 195
+K+ L GP+S+ + S FY D C L HAV+LVG+G ++ +
Sbjct: 136 LKEALRFLGPISISVAVSDDFAFYKEGIF---DGECGD-QLNHAVMLVGFGMKEIVNPLT 191
Query: 196 -------YWLVRNSWGPIGPDEGFFKIE 216
Y++++NSWG + GF IE
Sbjct: 192 KKGEKHYYYIIKNSWGQQWGERGFINIE 219
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 21/132 (15%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLS--VLL 59
G+ + DYPY + C D+ K + K++L ++ +K+ L GP+S V +
Sbjct: 97 GICPDGDYPY--VSDAPNLCNIDRCTEK-YGIKNYLSVPDNK-LKEALRFLGPISISVAV 152
Query: 60 NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIP----------YWLVRNSWG 109
+ D G D C L HAV+LVG+G ++ + Y++++NSWG
Sbjct: 153 SDDFAFYKEGIF----DGECGD-QLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWG 207
Query: 110 PIGPDEGFFKIE 121
+ GF IE
Sbjct: 208 QQWGERGFINIE 219
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 140 MKKILYKYGPLSVGLN-SHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIP--- 195
+K+ L GP+S+ + S FY D C L HAV+LVG+G ++ +
Sbjct: 135 LKEALRFLGPISISVAVSDDFAFYKEGIF---DGECGD-QLNHAVMLVGFGMKEIVNPLT 190
Query: 196 -------YWLVRNSWGPIGPDEGFFKIE 216
Y++++NSWG + GF IE
Sbjct: 191 KKGEKHYYYIIKNSWGQQWGERGFINIE 218
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 21/132 (15%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLS--VLL 59
G+ + DYPY + C D+ K + K++L ++ +K+ L GP+S V +
Sbjct: 96 GICPDGDYPY--VSDAPNLCNIDRCTEK-YGIKNYLSVPDNK-LKEALRFLGPISISVAV 151
Query: 60 NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIP----------YWLVRNSWG 109
+ D G D C L HAV+LVG+G ++ + Y++++NSWG
Sbjct: 152 SDDFAFYKEGIF----DGECGD-QLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWG 206
Query: 110 PIGPDEGFFKIE 121
+ GF IE
Sbjct: 207 QQWGERGFINIE 218
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 19/135 (14%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSV-LLN 60
GL S+ DYPY + E C + + +T K ++ + K+ L GP+S+ +
Sbjct: 99 GLCSQDDYPYVSNLPET--CNLKRCNER-YTIKSYVSIP-DDKFKEALRYLGPISISIAA 154
Query: 61 SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD----------DIPYWLVRNSWGP 110
SD Y G + +P HAV+LVGYG +D Y++++NSWG
Sbjct: 155 SDDFAFYRGG-FYDGECGAAP---NHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGS 210
Query: 111 IGPDEGFFKIERGNN 125
+ G+ +E N
Sbjct: 211 DWGEGGYINLETDEN 225
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 15/90 (16%)
Query: 138 ETMKKILYKYGPLSVGLN-SHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD---- 192
+ K+ L GP+S+ + S FY G + +P HAV+LVGYG +D
Sbjct: 136 DKFKEALRYLGPISISIAASDDFAFYRGG-FYDGECGAAP---NHAVILVGYGMKDIYNE 191
Query: 193 ------DIPYWLVRNSWGPIGPDEGFFKIE 216
Y++++NSWG + G+ +E
Sbjct: 192 DTGRMEKFYYYIIKNSWGSDWGEGGYINLE 221
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 16/133 (12%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
G+ + YPY+ + KVK N +++I + P+S+++ +
Sbjct: 79 GIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNNEQALIQRIAIQ--PVSIVVEA 136
Query: 62 D--LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
+Y G T + HAV VGYG Y L++NSWG + G+ +
Sbjct: 137 KGRAFQNYRGGIFAGPCGT----SIDHAVAAVGYGND----YILIKNSWGTGWGEGGYIR 188
Query: 120 IERGN----NACG 128
I+RG+ ACG
Sbjct: 189 IKRGSGNPQGACG 201
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 181 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEH 217
HAV VGYG Y L++NSWG + G+ +I+
Sbjct: 159 HAVAAVGYGND----YILIKNSWGTGWGEGGYIRIKR 191
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 86 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG 123
HAV VGYG Y L+RNSWG + G+ +I+RG
Sbjct: 310 HAVAAVGYGPN----YILIRNSWGTGWGENGYIRIKRG 343
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 181 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEH 217
HAV VGYG Y L+RNSWG + G+ +I+
Sbjct: 310 HAVAAVGYGPN----YILIRNSWGTGWGENGYIRIKR 342
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 13/71 (18%)
Query: 163 NGTPIR-----KNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI-- 215
N P+R KND + GHAVL VGY D+I ++ +RNSWG ++G+F +
Sbjct: 218 NSLPVRIPLPTKNDTL----EGGHAVLCVGY--DDEIRHFRIRNSWGNNVGEDGYFWMPY 271
Query: 216 EHTLRSHLTHD 226
E+ + L D
Sbjct: 272 EYISNTQLADD 282
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 11/56 (19%)
Query: 68 NGTPIR-----KNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFF 118
N P+R KND + GHAVL VGY D+I ++ +RNSWG ++G+F
Sbjct: 218 NSLPVRIPLPTKNDTL----EGGHAVLCVGY--DDEIRHFRIRNSWGNNVGEDGYF 267
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
GL+SE+ YPY+ + C Y+ K + F+ E + K + GP+SV ++
Sbjct: 82 GLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAID 137
Query: 61 S---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG 94
+ + G + CS D+ H VL+VGYG
Sbjct: 138 AGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYG 171
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG 189
+ + K + GP+SV +++ FY + D CS D+ H VL+VGYG
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYG 171
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
GL+SE+ YPY+ + C Y+ K + F+ E + K + GP+SV ++
Sbjct: 82 GLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAID 137
Query: 61 S---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG 94
+ + G + CS D+ H VL+VGYG
Sbjct: 138 AGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYG 171
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG 189
+ + K + GP+SV +++ FY + D CS D+ H VL+VGYG
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYG 171
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 86 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG 123
HAV VGYG Y L++NSWG + G+ +I+RG
Sbjct: 159 HAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRG 192
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 181 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEH 217
HAV VGYG Y L++NSWG + G+ +I+
Sbjct: 159 HAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKR 191
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 86 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN 124
HAV VGYG Y L++NSWG + G+ +I+RG
Sbjct: 159 HAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGT 193
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 181 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEH 217
HAV VGYG Y L++NSWG + G+ +I+
Sbjct: 159 HAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKR 191
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 86 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN 124
HAV VGYG Y L++NSWG + G+ +I+RG
Sbjct: 159 HAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGT 193
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 181 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEH 217
HAV VGYG Y L++NSWG + G+ +I+
Sbjct: 159 HAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKR 191
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 86 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG 123
HAV VGYG Y L++NSWG + G+ +I+RG
Sbjct: 159 HAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRG 192
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 181 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEH 217
HAV VGYG Y L++NSWG + G+ +I+
Sbjct: 159 HAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKR 191
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 86 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG 123
HAV VGYG Y L++NSWG + G+ +I+RG
Sbjct: 159 HAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRG 192
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 181 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEH 217
HAV VGYG Y L++NSWG + G+ +I+
Sbjct: 159 HAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKR 191
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 86 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG 123
HAV VGYG Y L++NSWG + G+ +I+RG
Sbjct: 159 HAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRG 192
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 181 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEH 217
HAV VGYG Y L++NSWG + G+ +I+
Sbjct: 159 HAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKR 191
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 86 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN 124
HAV VGYGK Y L++NSWGP + G+ +I R +
Sbjct: 159 HAVTAVGYGKSGGKGYILIKNSWGPGWGENGYIRIRRAS 197
>pdb|2YQZ|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YQZ|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YR0|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
pdb|2YR0|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
Length = 263
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 88 VLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNA 126
LL G+ + + P W ++ W +EG F +ERG +A
Sbjct: 136 ALLEGWDQAEASPEWTLQERWRAFAAEEG-FPVERGLHA 173
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 28.5 bits (62), Expect = 3.7, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 196 YWLVRNSWGPIGPDEGFFKIEHTLRSH 222
YWLV+NSWG G+ K+ R+H
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAKDRRNH 30
Score = 27.3 bits (59), Expect = 8.2, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 101 YWLVRNSWGPIGPDEGFFKIERG-NNACG 128
YWLV+NSWG G+ K+ + N CG
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAKDRRNHCG 32
>pdb|1D2T|A Chain A, Crystal Structure Of Acid Phosphatase From Escherichia
Blattae
pdb|1EOI|A Chain A, Crystal Structure Of Acid Phosphatase From Escherichia
Blattae Complexed With The Transition State Analog
Molybdate
pdb|1EOI|B Chain B, Crystal Structure Of Acid Phosphatase From Escherichia
Blattae Complexed With The Transition State Analog
Molybdate
pdb|1EOI|C Chain C, Crystal Structure Of Acid Phosphatase From Escherichia
Blattae Complexed With The Transition State Analog
Molybdate
Length = 231
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 125 NACGKDFLHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVL 184
N +D L NGS Y G S+G + L+ P R+N+ Y+LG + +
Sbjct: 133 NTTEQDKLSKNGS-------YPSGHTSIGWATALV-LAEINPQRQNEILKRGYELGQSRV 184
Query: 185 LVGYGKQDDI 194
+ GY Q D+
Sbjct: 185 ICGYHWQSDV 194
>pdb|3SFT|A Chain A, Crystal Structure Of Thermotoga Maritima Cheb
Methylesterase Catalytic Domain
Length = 193
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 159 IHFYNGTPIRKNDETCSPYDLGHAVLLVGYG 189
+ FY GT I ++ ETC + + +V+ GY
Sbjct: 146 VKFYGGTVIAEDKETCVVFGMPKSVIEEGYA 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.142 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,703,459
Number of Sequences: 62578
Number of extensions: 411325
Number of successful extensions: 1156
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 847
Number of HSP's gapped (non-prelim): 224
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)