RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy282
(233 letters)
>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease.
Length = 213
Score = 120 bits (303), Expect = 8e-34
Identities = 49/131 (37%), Positives = 70/131 (53%), Gaps = 10/131 (7%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
G+ +E DYPY +G C + KS K K + + +N E ++ L K GP+SV +
Sbjct: 80 GIVTESDYPYTAHDG---TCKFKKSNSKYAKIKGYGDVPYNDEEALQAALAKNGPVSVAI 136
Query: 60 N--SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 117
+ D Y CS L HAVL+VGYG ++ +PYW+V+NSWG + G+
Sbjct: 137 DAYEDDFQLYKSGVY--KHTECSGE-LDHAVLIVGYGTENGVPYWIVKNSWGTDWGENGY 193
Query: 118 FKIERGNNACG 128
F+I RG N CG
Sbjct: 194 FRIARGVNECG 204
Score = 81.8 bits (203), Expect = 5e-19
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 15/92 (16%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVL 184
+ +N E ++ L K GP+SV ++++ F Y T CS L HAVL
Sbjct: 114 VPYNDEEALQAALAKNGPVSVAIDAYEDDFQLYKSGVYKHTE-------CSGE-LDHAVL 165
Query: 185 LVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIE 216
+VGYG ++ +PYW+V+NSWG + G+F+I
Sbjct: 166 IVGYGTENGVPYWIVKNSWGTDWGENGYFRIA 197
>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database
nomenclature); composed of cysteine peptidases (CPs)
similar to papain, including the mammalian CPs
(cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain
is an endopeptidase with specific substrate preferences,
primarily for bulky hydrophobic or aromatic residues at
the S2 subsite, a hydrophobic pocket in papain that
accommodates the P2 sidechain of the substrate (the
second residue away from the scissile bond). Most
members of the papain subfamily are endopeptidases. Some
exceptions to this rule can be explained by specific
details of the catalytic domains like the occluding loop
in cathepsin B which confers an additional
carboxydipeptidyl activity and the mini-chain of
cathepsin H resulting in an N-terminal exopeptidase
activity. Papain-like CPs have different functions in
various organisms. Plant CPs are used to mobilize
storage proteins in seeds. Parasitic CPs act
extracellularly to help invade tissues and cells, to
hatch or to evade the host immune system. Mammalian CPs
are primarily lysosomal enzymes with the exception of
cathepsin W, which is retained in the endoplasmic
reticulum. They are responsible for protein degradation
in the lysosome. Papain-like CPs are synthesized as
inactive proenzymes with N-terminal propeptide regions,
which are removed upon activation. In addition to its
inhibitory role, the propeptide is required for proper
folding of the newly synthesized enzyme and its
stabilization in denaturing pH conditions. Residues
within the propeptide region also play a role in the
transport of the proenzyme to lysosomes or acidified
vesicles. Also included in this subfamily are proteins
classified as non-peptidase homologs, which lack
peptidase activity or have missing active site residues.
Length = 210
Score = 120 bits (303), Expect = 9e-34
Identities = 53/129 (41%), Positives = 72/129 (55%), Gaps = 7/129 (5%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLSVLLN 60
GL SE DYPY +G C Y+ SKV TG + E +K L YGP+SV ++
Sbjct: 79 GLASESDYPYTGKDG---TCKYNSSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAID 135
Query: 61 -SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
S Y G + CS +L HAVLLVGYG ++ + YW+V+NSWG ++G+ +
Sbjct: 136 ASSSFQFYKGGIY--SGPCCSNTNLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIR 193
Query: 120 IERGNNACG 128
I RG+N CG
Sbjct: 194 IARGSNLCG 202
Score = 89.6 bits (223), Expect = 5e-22
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 131 FLHFNGSETMKKILYKYGPLSVGLN-SHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG 189
+ E +K L YGP+SV ++ S FY G + CS +L HAVLLVGYG
Sbjct: 111 NVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGIY--SGPCCSNTNLNHAVLLVGYG 168
Query: 190 KQDDIPYWLVRNSWGPIGPDEGFFKI 215
++ + YW+V+NSWG ++G+ +I
Sbjct: 169 TENGVDYWIVKNSWGTSWGEKGYIRI 194
>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease.
Length = 175
Score = 75.7 bits (187), Expect = 4e-17
Identities = 39/130 (30%), Positives = 50/130 (38%), Gaps = 47/130 (36%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
GLE+E YPY + DF YK G
Sbjct: 81 GLETESCYPYTGSVAID--------------ASDFQF-----------YKSG-------- 107
Query: 62 DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ--DDIPYWLVRNSWGPIGPDEGFFK 119
Y+ C L HAVL+VGYG + + YW+V+NSWG + G+F+
Sbjct: 108 ----IYDHP-------GCGSGTLDHAVLIVGYGTEVENGKDYWIVKNSWGTDWGENGYFR 156
Query: 120 IERG-NNACG 128
I RG NN CG
Sbjct: 157 IARGKNNECG 166
Score = 66.5 bits (163), Expect = 9e-14
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 145 YKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ--DDIPYWLVRNS 202
Y Y SV +++ FY I + C L HAVL+VGYG + + YW+V+NS
Sbjct: 88 YPY-TGSVAIDASDFQFYKSG-IYDHPG-CGSGTLDHAVLIVGYGTEVENGKDYWIVKNS 144
Query: 203 WGPIGPDEGFFKI 215
WG + G+F+I
Sbjct: 145 WGTDWGENGYFRI 157
>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as
Dipeptidyl Peptidase I (DPPI), an atypical papain-like
cysteine peptidase with chloride dependency and
dipeptidyl aminopeptidase activity, resulting from its
tetrameric structure which limits substrate access. Each
subunit of the tetramer is composed of three peptides:
the heavy and light chains, which together adopts the
papain fold and forms the catalytic domain; and the
residual propeptide region, which forms a beta barrel
and points towards the substrate's N-terminus. The
subunit composition is the result of the unique
characteristic of procathepsin C maturation involving
the cleavage of the catalytic domain and the
non-autocatalytic excision of an activation peptide
within its propeptide region. By removing N-terminal
dipeptide extensions, cathepsin C activates granule
serine peptidases (granzymes) involved in cell-mediated
apoptosis, inflammation and tissue remodelling.
Loss-of-function mutations in cathepsin C are associated
with Papillon-Lefevre and Haim-Munk syndromes, rare
diseases characterized by hyperkeratosis and early-onset
periodontitis. Cathepsin C is widely expressed in many
tissues with high levels in lung, kidney and placenta.
It is also highly expressed in cytotoxic lymphocytes and
mature myeloid cells.
Length = 243
Score = 77.0 bits (190), Expect = 4e-17
Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNG------SETMKKILYKYGPL 55
G+ +E +PY + C S+ + + D+ + G + MK +Y+ GP+
Sbjct: 89 GIVTEDYFPYTADDDRP--CKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPI 146
Query: 56 SVLL--NSDLIHDYNGT-PIRKNDETCS-------PYDL-GHAVLLVGYGKQDD--IPYW 102
V SD G NDE P++L HAVLLVG+G+ + YW
Sbjct: 147 VVAFEVYSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYW 206
Query: 103 LVRNSWGPIGPDEGFFKIERGNNACG 128
+V+NSWG ++G+FKI RG N CG
Sbjct: 207 IVKNSWGSSWGEKGYFKIRRGTNECG 232
Score = 63.2 bits (154), Expect = 5e-12
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 13/89 (14%)
Query: 140 MKKILYKYGPLSVGL--NSHLIHFYNGT-PIRKNDETCS-------PYDL-GHAVLLVGY 188
MK +Y+ GP+ V S + G NDE P++L HAVLLVG+
Sbjct: 136 MKWEIYRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGW 195
Query: 189 GKQDD--IPYWLVRNSWGPIGPDEGFFKI 215
G+ + YW+V+NSWG ++G+FKI
Sbjct: 196 GEDEIKGEKYWIVKNSWGSSWGEKGYFKI 224
>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of
cathepsin B and similar proteins, including
tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin
B is a lysosomal papain-like cysteine peptidase which is
expressed in all tissues and functions primarily as an
exopeptidase through its carboxydipeptidyl activity.
Together with other cathepsins, it is involved in the
degradation of proteins, proenzyme activation, Ag
processing, metabolism and apoptosis. Cathepsin B has
been implicated in a number of human diseases such as
cancer, rheumatoid arthritis, osteoporosis and
Alzheimer's disease. The unique carboxydipeptidyl
activity of cathepsin B is attributed to the presence of
an occluding loop in its active site which favors the
binding of the C-termini of substrate proteins. Some
members of this group do not possess the occluding loop.
TIN-Ag is an extracellular matrix basement protein which
was originally identified as a target Ag involved in
anti-tubular basement membrane antibody-mediated
interstitial nephritis. It plays a role in renal
tubulogenesis and is defective in hereditary
tubulointerstitial disorders. TIN-Ag is exclusively
expressed in kidney tissues. .
Length = 236
Score = 76.5 bits (189), Expect = 7e-17
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 20 KCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSV--LLNSDLIHDYNGTPIRKNDE 77
C + K + + + K + GP+ + D ++ Y +
Sbjct: 122 GCEKTYEEDKHKGKSAYSVPSDETDIMKEIMTNGPVQAAFTVYEDFLY-YKSGVYQH--- 177
Query: 78 TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
T GHAV ++G+G ++ +PYWL NSWG + G+F+I RG+N CG
Sbjct: 178 TSGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGSNECG 228
Score = 60.7 bits (148), Expect = 4e-11
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 180 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
GHAV ++G+G ++ +PYWL NSWG + G+F+I
Sbjct: 185 GHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRI 220
>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional.
Length = 348
Score = 76.7 bits (188), Expect = 2e-16
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 5 SEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLNSDL 63
+EK YPY + NG+ +C+ ++ SE M L K GP+S+ +++
Sbjct: 210 TEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMESSERVMAAWLAKNGPISIAVDASS 269
Query: 64 IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG 123
Y+ + +C L H VLLVGY ++PYW+++NSWG ++G+ ++ G
Sbjct: 270 FMSYHSGVL----TSCIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMG 325
Query: 124 NNAC 127
NAC
Sbjct: 326 VNAC 329
Score = 58.9 bits (142), Expect = 2e-10
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 197
M L K GP+S+ +++ Y+ + +C L H VLLVGY ++PYW
Sbjct: 249 RVMAAWLAKNGPISIAVDASSFMSYHSGVL----TSCIGEQLNHGVLLVGYNMTGEVPYW 304
Query: 198 LVRNSWGPIGPDEGFFKIEHTLRSHLTHDIP 228
+++NSWG ++G+ ++ + + L P
Sbjct: 305 VIKNSWGEDWGEKGYVRVTMGVNACLLTGYP 335
>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database
nomenclature), also referred to as the papain family;
composed of two subfamilies of cysteine peptidases
(CPs), C1A (papain) and C1B (bleomycin hydrolase).
Papain-like enzymes are mostly endopeptidases with some
exceptions like cathepsins B, C, H and X, which are
exopeptidases. Papain-like CPs have different functions
in various organisms. Plant CPs are used to mobilize
storage proteins in seeds while mammalian CPs are
primarily lysosomal enzymes responsible for protein
degradation in the lysosome. Papain-like CPs are
synthesized as inactive proenzymes with N-terminal
propeptide regions, which are removed upon activation.
Bleomycin hydrolase (BH) is a CP that detoxifies
bleomycin by hydrolysis of an amide group. It acts as a
carboxypeptidase on its C-terminus to convert itself
into an aminopeptidase and peptide ligase. BH is found
in all tissues in mammals as well as in many other
eukaryotes. It forms a hexameric ring barrel structure
with the active sites imbedded in the central channel.
Some members of the C1 family are proteins classified as
non-peptidase homologs which lack peptidase activity or
have missing active site residues.
Length = 223
Score = 71.0 bits (174), Expect = 6e-15
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 8/127 (6%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSV-- 57
G+ E+DYPY + + + KD+ + N E +K+ L K GP+
Sbjct: 83 GIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGF 142
Query: 58 LLNSDLIHDYNG--TPIRKNDETCSPYDLGHAVLLVGYGKQ--DDIPYWLVRNSWGPIGP 113
+ S G GHAV++VGY + ++V+NSWG
Sbjct: 143 DVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWG 202
Query: 114 DEGFFKI 120
D G+ +I
Sbjct: 203 DNGYGRI 209
Score = 65.6 bits (160), Expect = 5e-13
Identities = 36/182 (19%), Positives = 57/182 (31%), Gaps = 15/182 (8%)
Query: 45 MKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLV 104
+K +Y LS L N + N L + LV IP
Sbjct: 36 IKGGEDEYVDLSPQ---YLYICANDECLGINGSCDGGGPLSALLKLV---ALKGIPPEED 89
Query: 105 RNSWGPIGPDEGFFKIERGNNACGKDF---LHFNGSETMKKILYKYGPLSVGLNSHLIHF 161
+E + + N E +K+ L K GP+ G + +
Sbjct: 90 YPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVYSGFD 149
Query: 162 Y----NGTPIRKNDETCSPYDLGHAVLLVGYGKQ--DDIPYWLVRNSWGPIGPDEGFFKI 215
GHAV++VGY + ++V+NSWG D G+ +I
Sbjct: 150 RLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRI 209
Query: 216 EH 217
+
Sbjct: 210 SY 211
>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional.
Length = 448
Score = 61.6 bits (150), Expect = 4e-11
Identities = 42/138 (30%), Positives = 60/138 (43%), Gaps = 26/138 (18%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
GL S D PY +G KC +K +L G + + K L P V +
Sbjct: 313 GLSSSSDVPYLAKDG---KCVVSSTKKVYIDS--YLVAKGKDVLNKSLV-ISPTVVYIAV 366
Query: 62 --DLIHD----YNGTPIRKNDETCSPYDLGHAVLLVG--YGKQDDIPYWLVRNSWGPIGP 113
+L+ YNG C L HAVLLVG Y ++ YW+++NSWG
Sbjct: 367 SRELLKYKSGVYNGE--------CGKS-LNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWG 417
Query: 114 DEGFFKIER---GNNACG 128
+ G+ ++ER G + CG
Sbjct: 418 ENGYMRLERTNEGTDKCG 435
Score = 47.8 bits (114), Expect = 2e-06
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 131 FLHFNGSETMKKILYKYGPLSVGLNSH--LIHF----YNGTPIRKNDETCSPYDLGHAVL 184
+L G + + K L P V + L+ + YNG C L HAVL
Sbjct: 342 YLVAKGKDVLNKSLV-ISPTVVYIAVSRELLKYKSGVYNGE--------CGKS-LNHAVL 391
Query: 185 LVG--YGKQDDIPYWLVRNSWGPIGPDEGFFKIEHT 218
LVG Y ++ YW+++NSWG + G+ ++E T
Sbjct: 392 LVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERT 427
>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only
papain-like lysosomal cysteine peptidase exhibiting
carboxymonopeptidase activity. It can also act as a
carboxydipeptidase, like cathepsin B, but has been shown
to preferentially cleave substrates through a
monopeptidyl carboxypeptidase pathway. The propeptide
region of cathepsin X, the shortest among papain-like
peptidases, is covalently attached to the active site
cysteine in the inactive form of the enzyme. Little is
known about the biological function of cathepsin X. Some
studies point to a role in early tumorigenesis. A more
recent study indicates that cathepsin X expression is
restricted to immune cells suggesting a role in
phagocytosis and the regulation of the immune response.
Length = 239
Score = 57.4 bits (139), Expect = 5e-10
Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 18/142 (12%)
Query: 76 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLHFN 135
DETC+PY + P+ P F I+ D+ +
Sbjct: 90 DETCNPY-QAK--------DGECNPFNRCGTCN----PFGECFAIKNYTLYFVSDYGSVS 136
Query: 136 GSETMKKILYKYGPLSVGLNSH-LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDD- 193
G + M +Y GP+S G+ + + Y G ++ + H + + G+G ++
Sbjct: 137 GRDKMMAEIYARGPISCGIMATEALENYTGGVYKEYVQDPLI---NHIISVAGWGVDENG 193
Query: 194 IPYWLVRNSWGPIGPDEGFFKI 215
+ YW+VRNSWG + G+F+I
Sbjct: 194 VEYWIVRNSWGEPWGERGWFRI 215
Score = 55.1 bits (133), Expect = 3e-09
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 34 KDFLHFNGSETMKKILYKYGPLSV-LLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVG 92
D+ +G + M +Y GP+S ++ ++ + +Y G ++ + H + + G
Sbjct: 130 SDYGSVSGRDKMMAEIYARGPISCGIMATEALENYTGGVYKEYVQDPLI---NHIISVAG 186
Query: 93 YGKQDD-IPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFL 132
+G ++ + YW+VRNSWG + G+F+I + + L
Sbjct: 187 WGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNL 227
>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional.
Length = 693
Score = 51.5 bits (123), Expect = 1e-07
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 86 HAVLLVGYGKQDD----IPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
HA++LVG+G+++ YW+ RNSWG EG+FKI RG N G
Sbjct: 620 HAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSG 666
Score = 44.9 bits (106), Expect = 2e-05
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
Query: 181 HAVLLVGYGKQDD----IPYWLVRNSWGPIGPDEGFFKI 215
HA++LVG+G+++ YW+ RNSWG EG+FKI
Sbjct: 620 HAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKI 658
>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional.
Length = 489
Score = 50.9 bits (122), Expect = 1e-07
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 19/131 (14%)
Query: 2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN- 60
GL SE DYPY + E C D+ K K + K ++ + K+ + GP+SV +
Sbjct: 345 GLCSEDDYPYVSDTPEL--CNIDRCKEK-YKIKSYVSIP-EDKFKEAIRFLGPISVSIAV 400
Query: 61 SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIP----------YWLVRNSWGP 110
SD Y G D C + HAV+LVGYG ++ Y++++NSWG
Sbjct: 401 SDDFAFYKGGIF---DGECG-EEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGE 456
Query: 111 IGPDEGFFKIE 121
++GF +IE
Sbjct: 457 SWGEKGFIRIE 467
Score = 40.1 bits (94), Expect = 5e-04
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 15/80 (18%)
Query: 148 GPLSVGLN-SHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIP----------Y 196
GP+SV + S FY G D C + HAV+LVGYG ++ Y
Sbjct: 392 GPISVSIAVSDDFAFYKGGIF---DGECG-EEPNHAVILVGYGMEEIYNSDTKKMEKRYY 447
Query: 197 WLVRNSWGPIGPDEGFFKIE 216
++++NSWG ++GF +IE
Sbjct: 448 YIIKNSWGESWGEKGFIRIE 467
>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional.
Length = 1004
Score = 51.2 bits (122), Expect = 2e-07
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 6/54 (11%)
Query: 86 HAVLLVGYG-----KQDDIPYWLVRNSWGPIGPDEGFFKIER-GNNACGKDFLH 133
HAV +VGYG + + YW+VRNSWG DEG+FK++ G + C +F+H
Sbjct: 723 HAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHCEDNFIH 776
Score = 47.0 bits (111), Expect = 4e-06
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 5/41 (12%)
Query: 181 HAVLLVGYG-----KQDDIPYWLVRNSWGPIGPDEGFFKIE 216
HAV +VGYG + + YW+VRNSWG DEG+FK++
Sbjct: 723 HAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVD 763
>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional.
Length = 548
Score = 43.3 bits (102), Expect = 6e-05
Identities = 36/155 (23%), Positives = 60/155 (38%), Gaps = 28/155 (18%)
Query: 2 GLESEKDY--PYKNANGEKFKCAYDKSKVKLF------TGKDFLHFNGSETMKKILYKYG 53
G+ + Y PY + +G + C + + + G + + + +Y++G
Sbjct: 295 GILTTDSYYIPYDSGDGVERACKTRRPSRRYYFTNYGPLGGYYGAVTDPDEIIWEIYRHG 354
Query: 54 PL--SVLLNSDLI---HDYNGT---------PIRKNDETCSPY---DLGHAVLLVGYGK- 95
P+ SV NSD + D Y ++ H VL++G+G
Sbjct: 355 PVPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTD 414
Query: 96 QDDIPYWLVRNSWGPIGP--DEGFFKIERGNNACG 128
++ YWLV + WG D G KI RG NA
Sbjct: 415 ENGGDYWLVLDPWGSRRSWCDGGTRKIARGVNAYN 449
Score = 31.4 bits (71), Expect = 0.35
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 178 DLGHAVLLVGYGK-QDDIPYWLVRNSWG 204
++ H VL++G+G ++ YWLV + WG
Sbjct: 401 NVNHTVLIIGWGTDENGGDYWLVLDPWG 428
>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational
modification, protein turnover, chaperones].
Length = 372
Score = 33.7 bits (77), Expect = 0.068
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 10/48 (20%)
Query: 180 GHAVLLVGYGKQDDIPY----------WLVRNSWGPIGPDEGFFKIEH 217
GHAVL+VGY DI ++++NSWG + G+F I +
Sbjct: 265 GHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISY 312
Score = 33.7 bits (77), Expect = 0.075
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
Query: 85 GHAVLLVGYGKQDDIPY----------WLVRNSWGPIGPDEGFFKIE 121
GHAVL+VGY DI ++++NSWG + G+F I
Sbjct: 265 GHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWIS 311
>gnl|CDD|219395 pfam07387, Seadorna_VP7, Seadornavirus VP7. This family consists
of several Seadornavirus specific VP7 proteins of around
305 residues in length. The function of this family is
unknown. However, it appears to be distantly related to
protein kinases.
Length = 308
Score = 28.6 bits (64), Expect = 3.0
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 130 DFLHFNGSETMKKILYKYGPL------SVGLNSHLIHFYN 163
DF H NG+ T+ K + GPL S+ + ++N
Sbjct: 68 DFQHLNGNSTLAKGKTEIGPLFLKKIRSLPCCLNDALYFN 107
>gnl|CDD|220789 pfam10508, Proteasom_PSMB, Proteasome non-ATPase 26S subunit. The
26S proteasome, a eukaryotic ATP-dependent, dumb-bell
shaped, protease complex with a molecular mass of approx
20kDa consists of a central 20S proteasome,functioning
as a catalytic machine, and two large V-shaped terminal
modules, having possible regulatory roles,composed of
multiple subunits of 25- 110 kDa attached to the central
portion in opposite orientations. It is responsible for
degradation of abnormal intracellular proteins,
including oxidatively damaged proteins, and may play a
role as a component of a cellular anti-oxidative system.
Expression of catalytic core subunits including PSMB5
and peptidase activities of the proteasome were elevated
following incubation with 3-methylcholanthrene. The 20S
proteasome comprises a cylindrical stack of four rings,
two outer rings formed by seven alpha-subunits
(alpha1-alpha7) and two inner rings of seven
beta-subunits (beta1-beta7). Two outer rings of alpha
subunits maintain structure, while the central beta
rings contain the proteolytic active core subunits beta1
(PSMB6), beta2 (PSMB7), and beta5 (PSMB5). Expression of
PSMB5 can be altered by chemical reactants, such as
3-methylcholanthrene.
Length = 504
Score = 27.8 bits (62), Expect = 5.0
Identities = 15/53 (28%), Positives = 18/53 (33%), Gaps = 9/53 (16%)
Query: 128 GKDFLHFNGSETMKKILYKYG----PLSVGLNSHLIH-----FYNGTPIRKND 171
GK L F S ++ L G LSV L + FY T D
Sbjct: 325 GKQLLMFKTSGALEHTLKAAGAHQTMLSVELKKRALQALTSIFYFATEQATED 377
>gnl|CDD|132560 TIGR03521, GldG, gliding-associated putative ABC transporter
substrate-binding component GldG. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldG
is a protein linked to a type of rapid surface gliding
motility found in certain Bacteroidetes, such as
Flavobacterium johnsoniae and Cytophaga hutchinsonii.
Knockouts of GldG abolish the gliding phenotype. GldG,
along with GldA and GldF are believed to compose an ABC
transporter and are observed as an operon. Gliding
motility appears closely linked to chitin utilization in
the model species Flavobacterium johnsoniae.
Bacteroidetes with members of this protein family appear
to have all of the genes associated with gliding
motility.
Length = 552
Score = 27.3 bits (61), Expect = 7.6
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 48 ILYKYGPLSVLLNSDLIHDYNGTPI 72
+L+KYG + +N DL+ D N PI
Sbjct: 298 LLFKYG---IRINPDLVEDLNSAPI 319
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.142 0.459
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,114,126
Number of extensions: 1131162
Number of successful extensions: 841
Number of sequences better than 10.0: 1
Number of HSP's gapped: 806
Number of HSP's successfully gapped: 41
Length of query: 233
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 139
Effective length of database: 6,768,326
Effective search space: 940797314
Effective search space used: 940797314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)