BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2820
(82 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q811U3|RB6I2_RAT ELKS/Rab6-interacting/CAST family member 1 OS=Rattus norvegicus
GN=Erc1 PE=1 SV=1
Length = 948
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 46/55 (83%)
Query: 28 LYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGLK 82
L+ E+E +E+ +LR T++E+ELRIETQKQTL ARDESIKKLLEMLQ+KG+ K
Sbjct: 270 LHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAK 324
>sp|Q8IUD2|RB6I2_HUMAN ELKS/Rab6-interacting/CAST family member 1 OS=Homo sapiens GN=ERC1
PE=1 SV=1
Length = 1116
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 46/55 (83%)
Query: 28 LYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGLK 82
L+ E+E +E+ +LR T++E+ELRIETQKQTL ARDESIKKLLEMLQ+KG+ K
Sbjct: 270 LHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAK 324
>sp|Q99MI1|RB6I2_MOUSE ELKS/Rab6-interacting/CAST family member 1 OS=Mus musculus GN=Erc1
PE=1 SV=1
Length = 1120
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 46/55 (83%)
Query: 28 LYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGLK 82
L+ E+E +E+ +LR T++E+ELRIETQKQTL ARDESIKKLLEMLQ+KG+ K
Sbjct: 270 LHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAK 324
>sp|Q8K3M6|ERC2_RAT ERC protein 2 OS=Rattus norvegicus GN=Erc2 PE=1 SV=1
Length = 957
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 45/55 (81%)
Query: 28 LYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGLK 82
L E++ +E+ +LR T++E+ELRIETQKQTL ARDESIKKLLEMLQ+KG+ K
Sbjct: 266 LQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLPSK 320
>sp|Q6PH08|ERC2_MOUSE ERC protein 2 OS=Mus musculus GN=Erc2 PE=1 SV=2
Length = 957
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 45/55 (81%)
Query: 28 LYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGLK 82
L E++ +E+ +LR T++E+ELRIETQKQTL ARDESIKKLLEMLQ+KG+ K
Sbjct: 266 LQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLPSK 320
>sp|O15083|ERC2_HUMAN ERC protein 2 OS=Homo sapiens GN=ERC2 PE=1 SV=3
Length = 957
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 45/55 (81%)
Query: 28 LYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGLK 82
L E++ +E+ +LR T++E+ELRIETQKQTL ARDESIKKLLEMLQ+KG+ K
Sbjct: 266 LQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLPSK 320
>sp|Q6VGS5|DAPLE_MOUSE Protein Daple OS=Mus musculus GN=Ccdc88c PE=1 SV=1
Length = 2009
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVG 80
++ ++ L ENE LT+E+ L+ +++E +E Q Q L+ + S++K L+ LQN V
Sbjct: 630 LEKELHRLEKENEQLTKEVTSLKAATEKVEA-LEHQSQGLELENRSLRKSLDTLQNVSVQ 688
Query: 81 L 81
L
Sbjct: 689 L 689
>sp|Q9HBG4|VPP4_HUMAN V-type proton ATPase 116 kDa subunit a isoform 4 OS=Homo sapiens
GN=ATP6V0A4 PE=1 SV=2
Length = 840
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 8 EELRMRLRGPNLEMQNQIEVLYTENEHLT---REIGILRDTIKELELRIETQKQTLQARD 64
E L LR EMQN+I V E LT RE+ L +++LE ++ Q QA
Sbjct: 59 ESLERILRFLEDEMQNEIVVQLLEKSPLTPLPREMITLETVLEKLEGELQEANQNQQALK 118
Query: 65 ESIKKLLEM 73
+S +L E+
Sbjct: 119 QSFLELTEL 127
>sp|Q6PA48|TBRG4_XENLA Protein TBRG4 OS=Xenopus laevis GN=tbrg4 PE=2 SV=1
Length = 633
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 3 VRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELR---IETQKQ- 58
++ LE E+R R+R + + Q+ +Y + + ++ D +K LELR IE K
Sbjct: 166 LQALENEVRWRMRRLSFKSLVQLSDMYMTFDRTPEQKQLVSDLVKNLELRWTEIEDAKSV 225
Query: 59 -TLQARDESI-KKLLEMLQNKGV 79
TL R I K L+E L++K +
Sbjct: 226 VTLMTRVGFISKSLMEKLEDKAL 248
>sp|O51115|LEPA_BORBU Elongation factor 4 OS=Borrelia burgdorferi (strain ATCC 35210 /
B31 / CIP 102532 / DSM 4680) GN=lepA PE=3 SV=2
Length = 606
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
Query: 10 LRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARD 64
+ R+ ++M ++I +++T +EHL EIGI + +++ +K TL+A D
Sbjct: 216 VHFRIFEGQIKMGDKIRLMHTNSEHLIEEIGIFKISLE--------RKDTLEAGD 262
>sp|Q8ZQQ2|SLRP_SALTY E3 ubiquitin-protein ligase SlrP OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=slrP PE=1 SV=1
Length = 765
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNK 77
+Q I+ LY + LT L DTI+E+EL I + L R S + L++ NK
Sbjct: 218 LQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITE-LPERLPSALQSLDLFHNK 273
>sp|D0ZRB2|SLRP_SALT1 E3 ubiquitin-protein ligase SlrP OS=Salmonella typhimurium (strain
14028s / SGSC 2262) GN=slrP PE=3 SV=1
Length = 765
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNK 77
+Q I+ LY + LT L DTI+E+EL I + L R S + L++ NK
Sbjct: 218 LQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITE-LPERLPSALQSLDLFHNK 273
>sp|Q28CB1|TBD2B_XENTR TBC1 domain family member 2B OS=Xenopus tropicalis GN=tbc1d2b PE=2
SV=1
Length = 943
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 31 ENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKL 70
E +HL +E+ L+ ++KEL+ ++ +T+QA+DE I +L
Sbjct: 397 EKDHLHQEVEELKCSVKELKDQLNMMMETIQAKDEVIMRL 436
>sp|P34402|SAS4_CAEEL Spindle assembly abnormal protein 4 OS=Caenorhabditis elegans
GN=sas-4 PE=2 SV=2
Length = 808
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 32 NEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKL---LEMLQNKGVGLK 82
N+ T I LRD ++ E + +Q ++ RDE +KK +E LQ G LK
Sbjct: 423 NKEFTETIATLRDKLRASETKNAQYRQDIRVRDEKLKKKDEEIEKLQKDGNRLK 476
>sp|Q55DV8|VPS37_DICDI Vacuolar protein sorting-associated protein 37 OS=Dictyostelium
discoideum GN=vps37 PE=3 SV=1
Length = 333
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNK 77
E+ N+ L +ENE LT+ L + I +L + T KQ L E +K+ E LQ K
Sbjct: 212 ELSNRKSKLLSENERLTKITDPLPNDINDLSANLMTSKQKL----EELKRKQEQLQQK 265
>sp|Q3U0J8|TBD2B_MOUSE TBC1 domain family member 2B OS=Mus musculus GN=Tbc1d2b PE=1 SV=2
Length = 965
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 19 LEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKL 70
L + Q+E E E L +E+ L+ + EL R+ +T+QA+DE I KL
Sbjct: 408 LGLSGQLERFGLEKESLQQEVRTLKSKVGELNERLGMLMETIQAKDEVIIKL 459
>sp|P21249|ANT1_ONCVO Major antigen OS=Onchocerca volvulus GN=OVT1 PE=2 SV=2
Length = 2022
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 3 VRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQA 62
+R+++EE ++R+ E+ N+IE+L EN+ L E +++ I+++E T + L+
Sbjct: 535 IRKIDEETKIRIS----ELTNRIEMLLEENKRLKDENDGMKNRIQDIEKEYNTIIRKLEE 590
Query: 63 RDESIKKL 70
+D ++K L
Sbjct: 591 KDNALKNL 598
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,797,433
Number of Sequences: 539616
Number of extensions: 892427
Number of successful extensions: 6939
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 179
Number of HSP's that attempted gapping in prelim test: 6549
Number of HSP's gapped (non-prelim): 571
length of query: 82
length of database: 191,569,459
effective HSP length: 53
effective length of query: 29
effective length of database: 162,969,811
effective search space: 4726124519
effective search space used: 4726124519
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)