Query psy2820
Match_columns 82
No_of_seqs 23 out of 25
Neff 1.8
Searched_HMMs 46136
Date Fri Aug 16 17:46:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4809|consensus 99.9 1.4E-23 3E-28 176.0 7.4 82 1-82 198-288 (654)
2 PF10174 Cast: RIM-binding pro 99.6 7.6E-15 1.6E-19 124.1 9.6 80 2-81 75-172 (775)
3 COG3883 Uncharacterized protei 92.1 1.5 3.2E-05 34.3 8.4 58 21-78 57-114 (265)
4 PF09726 Macoilin: Transmembra 91.0 3.5 7.5E-05 35.5 10.2 37 3-39 437-476 (697)
5 PF12325 TMF_TATA_bd: TATA ele 89.6 5.2 0.00011 27.6 8.7 59 3-69 25-100 (120)
6 PF11598 COMP: Cartilage oligo 89.5 0.9 2E-05 27.4 4.1 29 20-48 12-40 (45)
7 PF08657 DASH_Spc34: DASH comp 89.5 3.2 7E-05 31.7 8.0 57 3-62 163-219 (259)
8 PF00170 bZIP_1: bZIP transcri 89.5 2.1 4.5E-05 25.4 5.6 34 19-52 29-62 (64)
9 PF11932 DUF3450: Protein of u 89.0 5.7 0.00012 28.7 8.6 45 23-67 49-93 (251)
10 PF05377 FlaC_arch: Flagella a 88.7 3 6.4E-05 26.2 6.1 33 20-52 4-36 (55)
11 COG3883 Uncharacterized protei 87.9 3.6 7.8E-05 32.3 7.4 51 18-68 61-111 (265)
12 PF10883 DUF2681: Protein of u 87.8 4 8.6E-05 27.3 6.6 55 21-78 28-82 (87)
13 PF10186 Atg14: UV radiation r 87.4 7.9 0.00017 27.1 8.8 23 33-55 80-102 (302)
14 PRK11637 AmiB activator; Provi 86.5 8.5 0.00018 29.8 8.8 54 23-76 82-135 (428)
15 PRK10803 tol-pal system protei 86.5 3.8 8.2E-05 30.6 6.6 34 19-52 57-90 (263)
16 PF10186 Atg14: UV radiation r 85.7 9.9 0.00022 26.6 8.1 34 32-65 72-105 (302)
17 PF08581 Tup_N: Tup N-terminal 85.7 7.6 0.00017 25.2 7.2 36 25-60 6-41 (79)
18 KOG4196|consensus 84.9 2 4.3E-05 31.4 4.4 34 17-50 82-115 (135)
19 PF11932 DUF3450: Protein of u 84.8 13 0.00027 27.0 8.5 55 21-75 61-115 (251)
20 PF06156 DUF972: Protein of un 84.8 2.6 5.5E-05 28.6 4.6 33 19-51 25-57 (107)
21 PF10146 zf-C4H2: Zinc finger- 84.4 12 0.00026 28.2 8.5 54 20-73 36-89 (230)
22 PRK10884 SH3 domain-containing 84.0 6 0.00013 29.2 6.6 35 25-59 134-168 (206)
23 PRK14127 cell division protein 83.2 4.1 8.9E-05 28.0 5.2 35 21-55 35-69 (109)
24 PF08826 DMPK_coil: DMPK coile 82.9 3.6 7.7E-05 25.9 4.4 44 6-50 16-59 (61)
25 PF08317 Spc7: Spc7 kinetochor 82.2 17 0.00036 27.6 8.6 59 16-74 202-260 (325)
26 KOG2391|consensus 82.0 22 0.00049 29.5 9.8 67 4-77 213-282 (365)
27 PRK00888 ftsB cell division pr 81.7 7.6 0.00017 25.8 5.9 32 19-50 30-61 (105)
28 PF08700 Vps51: Vps51/Vps67; 81.2 9.4 0.0002 22.9 7.0 59 3-61 24-82 (87)
29 PF10018 Med4: Vitamin-D-recep 80.5 16 0.00035 25.8 7.6 50 25-75 4-53 (188)
30 PRK11637 AmiB activator; Provi 79.5 22 0.00047 27.6 8.5 49 21-69 87-135 (428)
31 PF02183 HALZ: Homeobox associ 79.3 8.6 0.00019 22.6 4.9 31 21-51 10-40 (45)
32 PF10224 DUF2205: Predicted co 79.2 9.4 0.0002 25.1 5.6 29 31-59 17-45 (80)
33 TIGR03752 conj_TIGR03752 integ 79.1 15 0.00033 31.1 8.1 35 20-54 70-104 (472)
34 PF09738 DUF2051: Double stran 77.1 19 0.0004 28.3 7.6 56 4-59 87-148 (302)
35 PF10454 DUF2458: Protein of u 76.6 24 0.00052 25.0 7.6 58 13-80 17-74 (150)
36 PF04977 DivIC: Septum formati 76.3 5.5 0.00012 23.2 3.6 21 22-42 30-50 (80)
37 PF11559 ADIP: Afadin- and alp 75.6 21 0.00046 23.8 8.0 63 14-76 64-126 (151)
38 PRK15422 septal ring assembly 75.5 22 0.00047 23.9 7.3 54 21-74 23-76 (79)
39 COG3074 Uncharacterized protei 74.8 24 0.00051 24.0 7.3 52 21-72 23-74 (79)
40 PF07407 Seadorna_VP6: Seadorn 74.8 15 0.00033 30.9 7.0 48 23-72 32-83 (420)
41 PF04012 PspA_IM30: PspA/IM30 74.8 26 0.00056 24.5 7.6 49 20-68 95-146 (221)
42 PF04156 IncA: IncA protein; 74.6 24 0.00052 24.0 8.6 56 21-76 128-183 (191)
43 PF15070 GOLGA2L5: Putative go 74.6 36 0.00077 29.1 9.2 59 22-80 93-154 (617)
44 PRK13169 DNA replication intia 74.5 8.6 0.00019 26.4 4.6 33 19-51 25-57 (110)
45 PF00038 Filament: Intermediat 74.0 31 0.00067 25.0 9.0 45 18-62 218-262 (312)
46 KOG0804|consensus 73.9 20 0.00043 30.9 7.5 52 21-75 394-445 (493)
47 PRK09413 IS2 repressor TnpA; R 72.7 9.4 0.0002 25.0 4.3 30 20-49 75-104 (121)
48 COG2433 Uncharacterized conser 72.1 31 0.00067 30.6 8.4 54 21-74 427-490 (652)
49 PRK00888 ftsB cell division pr 71.5 9.5 0.00021 25.3 4.2 26 19-44 37-62 (105)
50 PF11577 NEMO: NF-kappa-B esse 71.5 24 0.00052 22.6 6.8 48 19-73 2-49 (68)
51 smart00338 BRLZ basic region l 71.3 10 0.00023 22.3 3.9 37 23-59 26-62 (65)
52 PF04697 Pinin_SDK_N: pinin/SD 70.4 7.5 0.00016 28.4 3.7 27 45-71 4-30 (134)
53 PF08317 Spc7: Spc7 kinetochor 69.7 47 0.001 25.2 8.7 51 22-72 215-268 (325)
54 smart00338 BRLZ basic region l 69.3 21 0.00045 21.0 5.9 36 16-51 26-61 (65)
55 PF13094 CENP-Q: CENP-Q, a CEN 68.7 31 0.00067 23.4 6.3 41 21-61 39-79 (160)
56 TIGR02894 DNA_bind_RsfA transc 68.5 46 0.001 24.7 7.7 49 25-73 99-147 (161)
57 PRK10884 SH3 domain-containing 68.1 46 0.001 24.6 8.4 19 35-53 137-155 (206)
58 TIGR00219 mreC rod shape-deter 67.6 43 0.00093 25.4 7.4 43 25-74 68-110 (283)
59 KOG0971|consensus 67.1 50 0.0011 31.3 8.9 40 35-74 495-534 (1243)
60 PF06005 DUF904: Protein of un 67.0 30 0.00065 22.0 8.3 51 25-75 20-70 (72)
61 PF07716 bZIP_2: Basic region 66.8 7.9 0.00017 22.4 2.7 25 18-42 27-51 (54)
62 PF07195 FliD_C: Flagellar hoo 66.7 39 0.00084 24.3 6.7 47 29-75 192-238 (239)
63 PRK09039 hypothetical protein; 66.4 52 0.0011 25.6 7.9 7 40-46 147-153 (343)
64 PF11559 ADIP: Afadin- and alp 65.7 37 0.00081 22.6 8.5 54 20-73 56-109 (151)
65 PF07989 Microtub_assoc: Micro 65.5 33 0.00071 21.9 6.2 26 28-53 48-73 (75)
66 PF13747 DUF4164: Domain of un 64.9 36 0.00078 22.1 8.9 70 3-72 17-88 (89)
67 PF15035 Rootletin: Ciliary ro 64.8 51 0.0011 23.9 9.1 65 2-67 65-132 (182)
68 PF10224 DUF2205: Predicted co 64.4 25 0.00054 23.1 5.0 45 5-49 12-63 (80)
69 PF04977 DivIC: Septum formati 64.0 25 0.00054 20.4 4.5 24 22-45 23-46 (80)
70 PRK09039 hypothetical protein; 61.9 74 0.0016 24.8 8.3 42 19-60 133-174 (343)
71 PRK13922 rod shape-determining 61.6 31 0.00067 25.0 5.5 42 24-73 70-111 (276)
72 KOG4571|consensus 61.5 34 0.00073 27.6 6.1 41 22-62 247-287 (294)
73 PF10211 Ax_dynein_light: Axon 61.2 55 0.0012 23.5 6.7 43 19-61 123-165 (189)
74 TIGR02977 phageshock_pspA phag 61.2 59 0.0013 23.3 7.6 48 21-68 97-147 (219)
75 PF15058 Speriolin_N: Sperioli 60.7 17 0.00037 28.0 4.2 25 21-45 10-34 (200)
76 PF10828 DUF2570: Protein of u 60.6 45 0.00097 21.9 5.7 29 23-51 25-53 (110)
77 PF04111 APG6: Autophagy prote 60.0 78 0.0017 24.4 8.4 28 21-48 62-89 (314)
78 TIGR02209 ftsL_broad cell divi 59.4 14 0.00031 22.1 3.0 19 22-40 37-55 (85)
79 PF01166 TSC22: TSC-22/dip/bun 59.4 9.9 0.00021 24.5 2.3 18 37-54 14-31 (59)
80 PF08581 Tup_N: Tup N-terminal 58.0 49 0.0011 21.5 7.9 51 26-79 28-78 (79)
81 PF00170 bZIP_1: bZIP transcri 57.7 37 0.0008 19.9 6.3 36 22-57 25-60 (64)
82 PF15397 DUF4618: Domain of un 57.6 78 0.0017 24.8 7.4 58 19-77 84-157 (258)
83 PF07888 CALCOCO1: Calcium bin 57.5 94 0.002 26.8 8.4 24 22-45 142-165 (546)
84 PF07200 Mod_r: Modifier of ru 56.6 55 0.0012 21.6 6.9 50 18-67 29-78 (150)
85 PF01025 GrpE: GrpE; InterPro 56.4 22 0.00047 23.7 3.7 25 25-49 20-44 (165)
86 TIGR00219 mreC rod shape-deter 56.3 52 0.0011 24.9 6.1 8 28-35 96-103 (283)
87 PF03961 DUF342: Protein of un 55.7 1E+02 0.0022 24.3 8.4 36 16-51 326-362 (451)
88 PF04420 CHD5: CHD5-like prote 55.4 69 0.0015 22.3 7.8 56 17-72 34-101 (161)
89 PF04772 Flu_B_M2: Influenza B 55.3 38 0.00081 24.0 4.9 24 10-46 37-60 (109)
90 PF05667 DUF812: Protein of un 54.9 77 0.0017 27.0 7.5 48 16-63 328-375 (594)
91 PF07888 CALCOCO1: Calcium bin 54.5 1.2E+02 0.0026 26.2 8.6 31 23-53 150-180 (546)
92 PRK10698 phage shock protein P 54.4 84 0.0018 23.0 7.5 55 21-75 97-157 (222)
93 PF11464 Rbsn: Rabenosyn Rab b 54.2 23 0.00049 21.2 3.1 28 30-57 15-42 (42)
94 PF05377 FlaC_arch: Flagella a 53.9 31 0.00068 21.6 3.9 41 26-73 3-43 (55)
95 COG1730 GIM5 Predicted prefold 52.6 60 0.0013 23.2 5.6 34 22-55 12-45 (145)
96 KOG2010|consensus 51.5 98 0.0021 26.2 7.5 50 20-69 158-207 (405)
97 PF04568 IATP: Mitochondrial A 51.0 63 0.0014 22.0 5.3 18 50-67 82-99 (100)
98 COG1842 PspA Phage shock prote 50.9 1E+02 0.0023 23.1 7.3 47 22-68 98-147 (225)
99 PRK13729 conjugal transfer pil 50.9 59 0.0013 27.6 6.2 29 28-56 81-109 (475)
100 smart00340 HALZ homeobox assoc 50.4 21 0.00045 22.0 2.6 21 24-44 13-33 (44)
101 PF09302 XLF: XLF (XRCC4-like 50.3 55 0.0012 22.1 5.0 34 41-74 136-169 (171)
102 PF05557 MAD: Mitotic checkpoi 50.0 51 0.0011 27.5 5.6 35 21-55 501-535 (722)
103 PF00816 Histone_HNS: H-NS his 50.0 61 0.0013 20.2 4.9 35 44-80 5-39 (93)
104 PF00038 Filament: Intermediat 50.0 96 0.0021 22.4 8.0 27 32-58 211-237 (312)
105 TIGR03499 FlhF flagellar biosy 49.6 53 0.0011 24.3 5.2 44 33-81 107-150 (282)
106 PRK14011 prefoldin subunit alp 49.4 81 0.0018 22.3 5.9 38 18-55 2-42 (144)
107 PF04111 APG6: Autophagy prote 49.3 1.2E+02 0.0026 23.4 8.7 50 19-68 46-95 (314)
108 PF08641 Mis14: Kinetochore pr 49.2 82 0.0018 21.4 7.3 51 17-67 34-89 (139)
109 PRK14872 rod shape-determining 48.8 41 0.00088 27.1 4.7 28 23-50 57-84 (337)
110 TIGR01843 type_I_hlyD type I s 48.7 1E+02 0.0023 22.4 8.8 46 24-69 138-183 (423)
111 PF06657 Cep57_MT_bd: Centroso 48.2 71 0.0015 20.4 5.2 59 16-77 10-69 (79)
112 PF13942 Lipoprotein_20: YfhG 48.0 60 0.0013 24.7 5.3 45 11-56 118-162 (179)
113 PF09787 Golgin_A5: Golgin sub 48.0 69 0.0015 26.0 6.0 52 25-76 276-327 (511)
114 PF07106 TBPIP: Tat binding pr 47.6 88 0.0019 21.3 6.4 23 21-43 84-106 (169)
115 PRK11091 aerobic respiration c 46.9 1.5E+02 0.0033 23.9 8.9 56 15-70 102-157 (779)
116 PF07047 OPA3: Optic atrophy 3 46.9 90 0.0019 21.2 5.6 25 34-58 109-133 (134)
117 PF07926 TPR_MLP1_2: TPR/MLP1/ 46.8 85 0.0018 20.9 8.1 46 24-69 67-112 (132)
118 PF07200 Mod_r: Modifier of ru 46.8 83 0.0018 20.8 8.2 48 25-72 29-76 (150)
119 smart00502 BBC B-Box C-termina 46.5 64 0.0014 19.4 8.1 21 53-73 77-97 (127)
120 PF05531 NPV_P10: Nucleopolyhe 46.3 84 0.0018 20.7 5.8 53 19-75 14-66 (75)
121 PRK13729 conjugal transfer pil 46.1 77 0.0017 27.0 6.2 36 18-53 78-113 (475)
122 PF07058 Myosin_HC-like: Myosi 45.6 64 0.0014 26.8 5.5 41 15-55 6-53 (351)
123 KOG2685|consensus 44.8 1.9E+02 0.0041 24.6 8.2 60 13-77 332-391 (421)
124 PRK03947 prefoldin subunit alp 44.1 92 0.002 20.5 6.1 33 21-53 4-36 (140)
125 COG1196 Smc Chromosome segrega 43.8 2.4E+02 0.0051 25.2 9.1 45 23-67 730-774 (1163)
126 PF08657 DASH_Spc34: DASH comp 43.7 75 0.0016 24.4 5.3 35 30-64 180-214 (259)
127 PRK12705 hypothetical protein; 43.6 2E+02 0.0043 24.3 8.5 34 37-70 70-103 (508)
128 KOG3313|consensus 43.5 44 0.00095 25.6 4.0 63 13-76 12-79 (187)
129 cd00584 Prefoldin_alpha Prefol 43.2 89 0.0019 20.1 5.6 36 20-55 3-38 (129)
130 PHA02562 46 endonuclease subun 43.2 1.6E+02 0.0034 22.9 8.1 33 20-52 178-210 (562)
131 KOG3119|consensus 42.7 60 0.0013 24.6 4.6 30 19-48 218-247 (269)
132 PF08606 Prp19: Prp19/Pso4-lik 42.6 89 0.0019 20.5 4.8 30 24-53 9-38 (70)
133 PRK04863 mukB cell division pr 42.6 2.5E+02 0.0054 26.7 9.3 64 18-81 987-1050(1486)
134 PF07106 TBPIP: Tat binding pr 42.4 1.1E+02 0.0023 20.8 7.5 30 21-50 77-106 (169)
135 COG4026 Uncharacterized protei 42.3 1.7E+02 0.0037 23.8 7.3 37 20-56 139-175 (290)
136 smart00787 Spc7 Spc7 kinetocho 42.0 1.7E+02 0.0036 22.9 8.3 51 24-74 205-255 (312)
137 PRK15178 Vi polysaccharide exp 41.8 59 0.0013 27.0 4.8 25 38-62 315-339 (434)
138 PRK03947 prefoldin subunit alp 41.7 1E+02 0.0022 20.3 5.6 37 21-57 11-47 (140)
139 cd08785 CARD_CARD9-like Caspas 41.3 26 0.00057 22.8 2.2 33 47-80 33-65 (86)
140 PF11853 DUF3373: Protein of u 41.0 25 0.00055 29.8 2.6 38 16-54 18-55 (489)
141 PF09744 Jnk-SapK_ap_N: JNK_SA 40.9 1.3E+02 0.0029 21.5 6.5 29 47-75 81-109 (158)
142 PRK06995 flhF flagellar biosyn 40.9 1.2E+02 0.0026 25.2 6.5 61 17-81 152-212 (484)
143 PF10845 DUF2576: Protein of u 40.4 47 0.001 20.8 3.1 23 31-53 12-34 (48)
144 PRK14722 flhF flagellar biosyn 40.2 1.4E+02 0.0031 23.9 6.6 57 21-81 34-90 (374)
145 TIGR02449 conserved hypothetic 40.1 99 0.0021 19.7 8.3 28 22-49 6-33 (65)
146 COG2919 Septum formation initi 39.5 79 0.0017 21.1 4.4 32 21-52 55-86 (117)
147 PF10168 Nup88: Nuclear pore c 39.4 2.6E+02 0.0056 24.4 8.6 31 19-49 561-591 (717)
148 KOG4593|consensus 39.3 1.9E+02 0.0041 26.2 7.7 60 15-74 547-637 (716)
149 TIGR03495 phage_LysB phage lys 39.3 1.4E+02 0.003 21.2 6.3 31 23-53 19-49 (135)
150 PF07798 DUF1640: Protein of u 38.7 1.3E+02 0.0029 20.9 7.7 25 43-67 126-150 (177)
151 TIGR00293 prefoldin, archaeal 38.7 1.1E+02 0.0023 19.7 5.6 32 21-52 4-35 (126)
152 TIGR01834 PHA_synth_III_E poly 38.7 84 0.0018 25.3 5.1 38 14-51 280-317 (320)
153 cd08326 CARD_CASP9 Caspase act 38.4 38 0.00082 21.7 2.6 29 48-80 34-62 (84)
154 PF15619 Lebercilin: Ciliary p 38.1 1.6E+02 0.0034 21.5 8.5 66 15-80 53-118 (194)
155 TIGR03185 DNA_S_dndD DNA sulfu 38.0 2.3E+02 0.005 23.4 8.9 20 20-39 206-225 (650)
156 COG5185 HEC1 Protein involved 37.7 1.5E+02 0.0033 26.3 6.8 69 7-76 353-421 (622)
157 PRK10803 tol-pal system protei 37.7 1.7E+02 0.0037 21.8 7.3 33 26-58 57-89 (263)
158 PRK10328 DNA binding protein, 37.6 1.4E+02 0.0031 20.9 6.1 40 41-80 32-71 (134)
159 PRK00846 hypothetical protein; 37.3 98 0.0021 20.2 4.4 35 19-53 9-43 (77)
160 PF05149 Flagellar_rod: Parafl 36.1 2.1E+02 0.0046 22.7 6.9 57 24-80 206-262 (289)
161 smart00733 Mterf Mitochondrial 36.1 38 0.00083 15.5 1.8 21 60-80 11-31 (31)
162 PF08172 CASP_C: CASP C termin 35.6 86 0.0019 23.8 4.5 27 24-50 87-113 (248)
163 PF14357 DUF4404: Domain of un 35.3 39 0.00085 21.7 2.3 14 66-79 72-85 (85)
164 PF14817 HAUS5: HAUS augmin-li 35.1 2.1E+02 0.0045 24.9 7.2 32 27-58 83-114 (632)
165 PRK05703 flhF flagellar biosyn 35.0 1.2E+02 0.0025 24.3 5.3 48 30-81 130-177 (424)
166 PF12709 Kinetocho_Slk19: Cent 34.2 89 0.0019 21.1 4.0 27 21-47 47-73 (87)
167 PF05761 5_nucleotid: 5' nucle 34.0 2E+02 0.0043 23.7 6.6 55 21-76 327-387 (448)
168 PF07989 Microtub_assoc: Micro 33.2 1.3E+02 0.0028 19.1 7.4 23 22-44 6-28 (75)
169 PRK10361 DNA recombination pro 33.0 3E+02 0.0066 23.3 8.6 37 24-60 61-97 (475)
170 PF06005 DUF904: Protein of un 32.8 1.3E+02 0.0029 19.0 6.7 36 19-54 28-63 (72)
171 COG2900 SlyX Uncharacterized p 32.7 73 0.0016 21.1 3.3 15 46-60 10-24 (72)
172 PF11853 DUF3373: Protein of u 32.7 42 0.00092 28.4 2.7 31 20-50 28-58 (489)
173 cd00632 Prefoldin_beta Prefold 32.7 1.3E+02 0.0029 19.1 6.7 53 23-75 23-90 (105)
174 COG4942 Membrane-bound metallo 32.4 3E+02 0.0066 23.1 7.8 15 26-40 41-55 (420)
175 PF01920 Prefoldin_2: Prefoldi 32.0 1.2E+02 0.0026 18.3 5.6 28 29-56 68-95 (106)
176 PF02403 Seryl_tRNA_N: Seryl-t 32.0 1.3E+02 0.0029 18.8 7.3 55 20-74 40-97 (108)
177 PF14645 Chibby: Chibby family 31.5 1.7E+02 0.0037 19.9 5.9 39 20-58 75-113 (116)
178 COG1730 GIM5 Predicted prefold 31.4 2E+02 0.0043 20.6 6.0 35 22-56 5-39 (145)
179 PRK14127 cell division protein 31.3 1.8E+02 0.0038 20.0 6.2 49 12-60 18-67 (109)
180 PF10174 Cast: RIM-binding pro 31.1 2.9E+02 0.0064 24.6 7.6 56 16-71 315-370 (775)
181 PF09730 BicD: Microtubule-ass 31.1 3.2E+02 0.007 24.3 7.8 53 24-76 266-318 (717)
182 PF14662 CCDC155: Coiled-coil 31.0 2.4E+02 0.0052 21.5 6.4 38 22-59 101-139 (193)
183 PF12777 MT: Microtubule-bindi 31.0 2.4E+02 0.0053 21.5 6.5 12 63-74 278-289 (344)
184 PF11577 NEMO: NF-kappa-B esse 30.9 1.5E+02 0.0032 19.0 4.9 47 9-55 17-63 (68)
185 PF02841 GBP_C: Guanylate-bind 30.9 2.3E+02 0.0049 21.1 8.6 39 23-61 204-242 (297)
186 PF05325 DUF730: Protein of un 30.9 1.7E+02 0.0037 21.1 5.2 38 18-55 80-117 (122)
187 PF07058 Myosin_HC-like: Myosi 30.7 68 0.0015 26.7 3.5 32 32-70 292-323 (351)
188 PF00619 CARD: Caspase recruit 30.4 52 0.0011 19.3 2.1 19 61-79 43-61 (85)
189 PF10458 Val_tRNA-synt_C: Valy 30.2 1.3E+02 0.0027 18.0 4.1 25 29-53 3-27 (66)
190 KOG4343|consensus 30.0 89 0.0019 27.9 4.3 32 20-51 306-337 (655)
191 PF10482 CtIP_N: Tumour-suppre 29.8 1.1E+02 0.0025 22.0 4.1 33 22-54 34-66 (120)
192 PRK02224 chromosome segregatio 29.3 3.4E+02 0.0073 22.7 7.7 46 20-65 346-391 (880)
193 PF08232 Striatin: Striatin fa 29.2 1.9E+02 0.0042 19.8 6.4 41 19-59 28-68 (134)
194 cd08332 CARD_CASP2 Caspase act 29.1 53 0.0012 21.0 2.2 30 48-81 38-67 (90)
195 PF09006 Surfac_D-trimer: Lung 28.6 1.5E+02 0.0032 18.2 4.2 22 20-41 3-24 (46)
196 PF05103 DivIVA: DivIVA protei 28.4 34 0.00074 21.7 1.2 36 20-55 22-57 (131)
197 COG3524 KpsE Capsule polysacch 28.1 1.2E+02 0.0025 25.5 4.4 14 56-69 252-265 (372)
198 KOG4005|consensus 27.9 1.7E+02 0.0037 23.9 5.2 27 19-45 93-119 (292)
199 TIGR01242 26Sp45 26S proteasom 27.7 1.5E+02 0.0032 22.3 4.6 26 21-46 11-36 (364)
200 PF12808 Mto2_bdg: Micro-tubul 27.6 1.5E+02 0.0033 18.2 5.1 28 17-44 23-50 (52)
201 PF02173 pKID: pKID domain; I 27.5 71 0.0015 19.3 2.4 26 53-78 7-33 (41)
202 PF14817 HAUS5: HAUS augmin-li 27.5 1.8E+02 0.0038 25.3 5.6 28 19-46 82-109 (632)
203 PF01988 VIT1: VIT family; In 27.3 1.7E+02 0.0036 20.8 4.6 21 61-81 76-96 (213)
204 COG1838 FumA Tartrate dehydrat 27.1 33 0.00072 26.0 1.1 17 60-76 29-45 (184)
205 TIGR01069 mutS2 MutS2 family p 26.7 4.2E+02 0.0092 23.1 7.7 20 40-59 535-554 (771)
206 PF04849 HAP1_N: HAP1 N-termin 26.6 3.4E+02 0.0074 21.8 7.2 55 15-69 74-129 (306)
207 PF10805 DUF2730: Protein of u 26.6 1.9E+02 0.0042 18.9 7.3 53 22-78 48-102 (106)
208 COG1196 Smc Chromosome segrega 26.5 4.7E+02 0.01 23.4 8.4 29 27-55 387-415 (1163)
209 PF08614 ATG16: Autophagy prot 26.5 2.3E+02 0.005 19.8 6.7 15 21-35 93-107 (194)
210 PRK11013 DNA-binding transcrip 26.3 1.6E+02 0.0034 20.8 4.3 48 3-50 39-89 (309)
211 PF15070 GOLGA2L5: Putative go 26.1 4.3E+02 0.0093 22.8 8.3 31 20-50 33-63 (617)
212 PF00846 Hanta_nucleocap: Hant 26.1 4.2E+02 0.0091 22.7 7.4 47 24-70 3-54 (428)
213 KOG1003|consensus 26.0 2.7E+02 0.0058 21.7 5.8 52 3-55 111-162 (205)
214 KOG2391|consensus 25.9 4E+02 0.0086 22.4 7.3 52 26-77 221-275 (365)
215 PF04350 PilO: Pilus assembly 25.9 1.5E+02 0.0033 18.7 3.9 54 23-77 6-62 (144)
216 PF04508 Pox_A_type_inc: Viral 25.9 83 0.0018 16.8 2.2 17 38-54 2-18 (23)
217 COG4942 Membrane-bound metallo 25.8 4E+02 0.0087 22.4 7.7 58 21-78 64-128 (420)
218 cd01671 CARD Caspase activatio 25.8 71 0.0015 18.6 2.1 18 63-80 42-59 (80)
219 PRK00736 hypothetical protein; 25.8 1.7E+02 0.0037 18.1 4.4 13 44-56 19-31 (68)
220 PF15397 DUF4618: Domain of un 25.8 2.4E+02 0.0052 22.1 5.6 42 9-51 180-221 (258)
221 KOG0964|consensus 25.5 3.9E+02 0.0084 25.7 7.6 70 9-78 443-523 (1200)
222 PF10359 Fmp27_WPPW: RNA pol I 24.8 3.8E+02 0.0082 21.7 6.9 57 21-77 161-229 (475)
223 PF12711 Kinesin-relat_1: Kine 24.6 99 0.0022 20.7 2.9 18 30-47 24-41 (86)
224 PF09738 DUF2051: Double stran 24.6 3.5E+02 0.0076 21.3 10.0 49 20-68 123-171 (302)
225 TIGR03185 DNA_S_dndD DNA sulfu 24.3 4.1E+02 0.0089 22.0 7.6 31 25-55 437-467 (650)
226 PRK10947 global DNA-binding tr 24.2 2.6E+02 0.0057 19.6 6.2 39 42-80 33-71 (135)
227 PF04880 NUDE_C: NUDE protein, 24.2 1.6E+02 0.0036 21.5 4.2 15 25-39 26-40 (166)
228 cd03569 VHS_Hrs_Vps27p VHS dom 24.2 2.4E+02 0.0052 19.2 7.1 61 9-76 45-111 (142)
229 PF10828 DUF2570: Protein of u 24.1 2.2E+02 0.0047 18.6 6.1 10 62-71 78-87 (110)
230 PF11382 DUF3186: Protein of u 23.9 3.3E+02 0.0073 20.8 7.7 17 62-78 94-110 (308)
231 PF06305 DUF1049: Protein of u 23.7 1.6E+02 0.0034 16.9 3.4 20 35-54 46-65 (68)
232 PRK09737 EcoKI restriction-mod 23.7 3.1E+02 0.0067 20.3 8.0 20 12-31 365-384 (461)
233 PF05667 DUF812: Protein of un 23.5 4.7E+02 0.01 22.4 7.9 7 64-70 393-399 (594)
234 PF05529 Bap31: B-cell recepto 23.4 2.6E+02 0.0056 19.3 6.0 24 31-54 155-178 (192)
235 TIGR00414 serS seryl-tRNA synt 23.4 3.9E+02 0.0084 21.3 8.0 23 20-42 41-63 (418)
236 KOG1760|consensus 23.4 2.9E+02 0.0064 20.2 5.3 34 42-75 82-115 (131)
237 TIGR03319 YmdA_YtgF conserved 23.2 4.4E+02 0.0095 21.9 8.0 19 52-70 105-123 (514)
238 PF10473 CENP-F_leu_zip: Leuci 23.2 2.8E+02 0.0061 19.7 8.3 12 60-71 99-110 (140)
239 PF04912 Dynamitin: Dynamitin 23.2 3.6E+02 0.0078 20.9 7.9 56 19-74 332-387 (388)
240 PF11336 DUF3138: Protein of u 23.1 1E+02 0.0022 26.8 3.4 28 30-57 25-52 (514)
241 PF13971 Mei4: Meiosis-specifi 23.0 1.2E+02 0.0027 25.0 3.7 60 4-73 40-99 (375)
242 PF13600 DUF4140: N-terminal d 22.9 2E+02 0.0043 17.8 4.3 9 41-49 74-82 (104)
243 PHA02557 22 prohead core prote 22.8 2.7E+02 0.006 22.3 5.5 32 39-70 143-174 (271)
244 PF01763 Herpes_UL6: Herpesvir 22.4 2.9E+02 0.0064 23.9 5.9 38 21-58 368-405 (557)
245 PF12709 Kinetocho_Slk19: Cent 22.3 2.6E+02 0.0056 18.9 4.6 6 68-73 80-85 (87)
246 KOG0995|consensus 22.2 2.3E+02 0.005 25.0 5.3 41 16-56 287-327 (581)
247 KOG0933|consensus 22.2 2.1E+02 0.0045 27.4 5.2 48 9-56 244-291 (1174)
248 PRK13922 rod shape-determining 22.0 2.5E+02 0.0055 20.3 4.8 19 22-40 75-93 (276)
249 cd00890 Prefoldin Prefoldin is 21.9 2.1E+02 0.0046 17.8 5.6 31 23-53 6-36 (129)
250 PF06698 DUF1192: Protein of u 21.9 1.5E+02 0.0033 18.5 3.2 20 20-39 25-44 (59)
251 PF15473 PCNP: PEST, proteolyt 21.9 39 0.00085 25.0 0.6 8 9-16 110-117 (150)
252 PF03954 Lectin_N: Hepatic lec 21.8 99 0.0021 22.5 2.6 25 42-66 92-116 (138)
253 KOG0996|consensus 21.8 6.7E+02 0.015 24.4 8.4 39 14-52 811-849 (1293)
254 KOG4005|consensus 21.6 1.9E+02 0.0041 23.6 4.4 58 3-63 99-156 (292)
255 KOG0999|consensus 21.5 3.7E+02 0.008 24.6 6.5 20 20-39 5-24 (772)
256 PF09969 DUF2203: Uncharacteri 21.4 2.8E+02 0.006 18.9 7.2 24 57-80 49-72 (120)
257 PRK05431 seryl-tRNA synthetase 21.3 4.3E+02 0.0093 21.1 7.9 20 21-40 40-59 (425)
258 COG4467 Regulator of replicati 21.2 1.2E+02 0.0027 21.7 3.0 29 20-48 26-54 (114)
259 PF14584 DUF4446: Protein of u 21.2 3.1E+02 0.0067 19.4 6.4 52 4-55 26-78 (151)
260 KOG3119|consensus 20.8 3.5E+02 0.0075 20.5 5.5 12 15-26 200-211 (269)
261 PF08172 CASP_C: CASP C termin 20.7 3.4E+02 0.0074 20.6 5.4 34 11-44 88-121 (248)
262 cd08306 Death_FADD Fas-associa 20.7 2.3E+02 0.005 17.8 4.9 53 27-79 11-74 (86)
263 PF10422 LRS4: Monopolin compl 20.6 33 0.00072 27.1 0.0 50 19-75 61-110 (249)
264 PF06216 RTBV_P46: Rice tungro 20.5 3.1E+02 0.0067 23.0 5.5 39 29-67 70-108 (389)
265 KOG0963|consensus 20.4 5.7E+02 0.012 22.9 7.3 42 34-80 321-362 (629)
266 PF04380 BMFP: Membrane fusoge 20.4 2.4E+02 0.0051 17.7 7.0 27 29-55 49-75 (79)
267 KOG3650|consensus 20.4 1.7E+02 0.0038 21.1 3.6 38 18-58 47-84 (120)
268 COG5509 Uncharacterized small 20.3 1.6E+02 0.0035 19.4 3.1 20 20-39 29-48 (65)
269 PF01519 DUF16: Protein of unk 20.3 3.1E+02 0.0068 19.1 6.6 33 37-76 60-92 (102)
270 KOG0982|consensus 20.2 5.9E+02 0.013 22.3 8.4 73 1-74 304-379 (502)
271 COG1729 Uncharacterized protei 20.2 3.3E+02 0.0071 21.3 5.3 20 17-36 57-76 (262)
272 KOG3335|consensus 20.0 3E+02 0.0066 21.0 5.0 33 32-64 101-133 (181)
No 1
>KOG4809|consensus
Probab=99.89 E-value=1.4e-23 Score=176.02 Aligned_cols=82 Identities=51% Similarity=0.544 Sum_probs=79.4
Q ss_pred ChHHHHHHHHH-HHhcCCCHHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy2820 1 MLVRQLEEELR-MRLRGPNLEMQNQIEV--------LYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLL 71 (82)
Q Consensus 1 mlvrqleeelr-~rmR~P~~E~q~q~e~--------l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLL 71 (82)
|.+|+|..||| .|+|+|+.++..+... +++|++++.+|+|+||+|++++|+|||||||||.||||||||||
T Consensus 198 m~argl~~ELR~qr~rnq~Le~~ssS~~g~~~~~~~~~ae~~~~~~e~~llr~t~~~~e~riEtqkqtl~ardesIkkLl 277 (654)
T KOG4809|consen 198 MNARGLSAELRNQRARNQPLEINSSSAKGLGYTCLGRLAELLTTKEEQFLLRSTDPSGEQRIETQKQTLDARDESIKKLL 277 (654)
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhcccCCCchHHHHHHHhhhHHHHHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHH
Confidence 67999999999 7889999999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCC
Q psy2820 72 EMLQNKGVGLK 82 (82)
Q Consensus 72 EmLq~KG~~~k 82 (82)
||||+||||++
T Consensus 278 EmLq~kgmg~~ 288 (654)
T KOG4809|consen 278 EMLQRKGMGRS 288 (654)
T ss_pred HHHHHhhcccc
Confidence 99999999974
No 2
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.58 E-value=7.6e-15 Score=124.08 Aligned_cols=80 Identities=53% Similarity=0.716 Sum_probs=70.7
Q ss_pred hHHHHHHHHHH-----HhcCC----C--------HHH-HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2820 2 LVRQLEEELRM-----RLRGP----N--------LEM-QNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQAR 63 (82)
Q Consensus 2 lvrqleeelr~-----rmR~P----~--------~E~-q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aR 63 (82)
-|.+|.+|||. |+.++ + .+. +.++.+|++|+|++++|+++||+|+++++.+|++|+|||.++
T Consensus 75 ei~~LqeELr~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~ 154 (775)
T PF10174_consen 75 EIQALQEELRAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKA 154 (775)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999977 55443 1 122 568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCC
Q psy2820 64 DESIKKLLEMLQNKGVGL 81 (82)
Q Consensus 64 DESIkKLLEmLq~KG~~~ 81 (82)
|+||+||++||++||+|+
T Consensus 155 ~eei~kL~e~L~~~g~~~ 172 (775)
T PF10174_consen 155 DEEIEKLQEMLQSKGLSA 172 (775)
T ss_pred HHHHHHHHHHHhhcCCcc
Confidence 999999999999999986
No 3
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.11 E-value=1.5 Score=34.33 Aligned_cols=58 Identities=31% Similarity=0.446 Sum_probs=39.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKG 78 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~KG 78 (82)
++.|++.+++..+.+..|+.-+..-|++++-.|+.=+..+..|++++++=+..+|.-|
T Consensus 57 L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG 114 (265)
T COG3883 57 LDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNG 114 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566666666666666666666666777777777777777777777777666666655
No 4
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.03 E-value=3.5 Score=35.48 Aligned_cols=37 Identities=32% Similarity=0.499 Sum_probs=28.1
Q ss_pred HHHHHHHHHHH---hcCCCHHHHHHHHHHhhhHHHHHHHH
Q psy2820 3 VRQLEEELRMR---LRGPNLEMQNQIEVLYTENEHLTREI 39 (82)
Q Consensus 3 vrqleeelr~r---mR~P~~E~q~q~e~l~~e~er~~rE~ 39 (82)
.||+|+|||.. .-+....+..++..++.|||.+...+
T Consensus 437 ~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl 476 (697)
T PF09726_consen 437 SRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKL 476 (697)
T ss_pred hhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 48999999998 46666777777777777777766554
No 5
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.60 E-value=5.2 Score=27.63 Aligned_cols=59 Identities=31% Similarity=0.469 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhhHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHhhHH
Q psy2820 3 VRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGI-----------------LRDTIKELELRIETQKQTLQARDE 65 (82)
Q Consensus 3 vrqleeelr~rmR~P~~E~q~q~e~l~~e~er~~rE~~l-----------------Lr~T~eElE~RietQkQTL~aRDE 65 (82)
+|++|-|+ .-++.++.+|.++.+.+..||.- |+.-+++++.|.++=-+.++-++|
T Consensus 25 lr~~E~E~--------~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E 96 (120)
T PF12325_consen 25 LRRLEGEL--------ASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSE 96 (120)
T ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 45555554 33566666666666666666544 444555555555555555555555
Q ss_pred HHHH
Q psy2820 66 SIKK 69 (82)
Q Consensus 66 SIkK 69 (82)
-+..
T Consensus 97 ~veE 100 (120)
T PF12325_consen 97 EVEE 100 (120)
T ss_pred HHHH
Confidence 5443
No 6
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=89.51 E-value=0.9 Score=27.38 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKE 48 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eE 48 (82)
++-+-+..+..+..++.+|+..||.||.|
T Consensus 12 ~l~~~l~elk~~l~~Q~kE~~~LRntI~e 40 (45)
T PF11598_consen 12 ELNQMLQELKELLRQQIKETRFLRNTIME 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677888889999999999999986
No 7
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=89.47 E-value=3.2 Score=31.74 Aligned_cols=57 Identities=19% Similarity=0.238 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2820 3 VRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQA 62 (82)
Q Consensus 3 vrqleeelr~rmR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~a 62 (82)
++.+|+=+. -.|.++.+..+..|...+.++..++.-|+..|.+-+.+++.+......
T Consensus 163 L~~ae~L~~---vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~ 219 (259)
T PF08657_consen 163 LRGAEKLCN---VYPLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSD 219 (259)
T ss_pred HHHHHHHHH---hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 444444333 379999999999999999998888877777777777777776554433
No 8
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=89.47 E-value=2.1 Score=25.35 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDTIKELELR 52 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~R 52 (82)
-+|+..++.|.++|+.+..++..|.+.+..|...
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566777777777777777777777776666543
No 9
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.98 E-value=5.7 Score=28.74 Aligned_cols=45 Identities=29% Similarity=0.383 Sum_probs=23.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy2820 23 NQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESI 67 (82)
Q Consensus 23 ~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESI 67 (82)
.+-..|.+|.+.+.+|+.-|+.-.+.++..+++|.+.+.+=...|
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi 93 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQI 93 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555554444333
No 10
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=88.72 E-value=3 Score=26.21 Aligned_cols=33 Identities=12% Similarity=0.321 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELR 52 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~R 52 (82)
|+.+.+.++.+..+-+.+|+.-+++++++++..
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~en 36 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEEN 36 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777777777543
No 11
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.91 E-value=3.6 Score=32.25 Aligned_cols=51 Identities=27% Similarity=0.364 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy2820 18 NLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIK 68 (82)
Q Consensus 18 ~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIk 68 (82)
--+++.+++.+..+++....|+..|.+-|++++.+|..+...|..|--++.
T Consensus 61 i~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 61 IEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999999999999987765
No 12
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=87.75 E-value=4 Score=27.34 Aligned_cols=55 Identities=29% Similarity=0.390 Sum_probs=44.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKG 78 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~KG 78 (82)
.+.+.+.|++|++.+..|...-..-++.-+.| ||-.=.+|.-|=..+.+-||+.|
T Consensus 28 a~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vr---qknee~~~~~sr~~V~d~L~q~g 82 (87)
T PF10883_consen 28 AKKQNAKLQKENEQLKTEKAVAETQVKNAKVR---QKNEENTRRLSRDSVIDQLQQHG 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHhhccCCHHHHHHHHHHcC
Confidence 45568899999999999998888877776654 77777777777788889999988
No 13
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.41 E-value=7.9 Score=27.05 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 33 EHLTREIGILRDTIKELELRIET 55 (82)
Q Consensus 33 er~~rE~~lLr~T~eElE~Riet 55 (82)
+.+.+++.-.|+.+.++...+++
T Consensus 80 ~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 80 ERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 14
>PRK11637 AmiB activator; Provisional
Probab=86.55 E-value=8.5 Score=29.81 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=26.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy2820 23 NQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQN 76 (82)
Q Consensus 23 ~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~ 76 (82)
.++..+..+.+....++.-+...+..++.+|...+..+..+.+.+++++..+..
T Consensus 82 ~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 82 EAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444445555555555555555555555555555544433
No 15
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=86.47 E-value=3.8 Score=30.55 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDTIKELELR 52 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~R 52 (82)
.+|++|++.|+.|..++.-.+.-+.--|+.|..|
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~r 90 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 90 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5788888877766665555544444444444433
No 16
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=85.71 E-value=9.9 Score=26.55 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy2820 32 NEHLTREIGILRDTIKELELRIETQKQTLQARDE 65 (82)
Q Consensus 32 ~er~~rE~~lLr~T~eElE~RietQkQTL~aRDE 65 (82)
...+..++.-+++.++....+++..++.+..|..
T Consensus 72 ~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 72 LERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444443
No 17
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=85.70 E-value=7.6 Score=25.24 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=18.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 25 IEVLYTENEHLTREIGILRDTIKELELRIETQKQTL 60 (82)
Q Consensus 25 ~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL 60 (82)
++.+.+|.+.+++|....+..=+++|..|.+|-|-+
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em 41 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEM 41 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455555666555555555444445555544444443
No 18
>KOG4196|consensus
Probab=84.90 E-value=2 Score=31.41 Aligned_cols=34 Identities=32% Similarity=0.494 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy2820 17 PNLEMQNQIEVLYTENEHLTREIGILRDTIKELE 50 (82)
Q Consensus 17 P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE 50 (82)
-+.+++||++.|..|+.++.+|+..++.-.+-+-
T Consensus 82 ~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 82 EKAELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888877776665543
No 19
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=84.82 E-value=13 Score=27.00 Aligned_cols=55 Identities=25% Similarity=0.377 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQ 75 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq 75 (82)
+..+++.|...++++.+.+.-.++.+.+++.+|++=..|...=.+.+.+.++-|+
T Consensus 61 l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~ 115 (251)
T PF11932_consen 61 LEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELE 115 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777777777777777777776666555555555555555444
No 20
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=84.76 E-value=2.6 Score=28.56 Aligned_cols=33 Identities=36% Similarity=0.477 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDTIKELEL 51 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~ 51 (82)
.++.+++..|..||.++..|+.-||+.+.+++.
T Consensus 25 ~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 25 EELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888999999999999999999999999876
No 21
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.43 E-value=12 Score=28.24 Aligned_cols=54 Identities=26% Similarity=0.354 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEM 73 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEm 73 (82)
|..++++.|..|......||-..-.-+..||.-|..-+..-..+.+.|.++.+-
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ee 89 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEE 89 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999988888888888888887753
No 22
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.03 E-value=6 Score=29.23 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=21.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 25 IEVLYTENEHLTREIGILRDTIKELELRIETQKQT 59 (82)
Q Consensus 25 ~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQT 59 (82)
+..|.+||+.+..|+..++..++.++..+++++.+
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466666666666666666666666666665544
No 23
>PRK14127 cell division protein GpsB; Provisional
Probab=83.20 E-value=4.1 Score=28.02 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=26.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIET 55 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Riet 55 (82)
+-+.++.++.|+.++..|+.-|+..+.+++.++..
T Consensus 35 V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 35 VIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44566777788888888888888888888777663
No 24
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=82.92 E-value=3.6 Score=25.88 Aligned_cols=44 Identities=27% Similarity=0.526 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy2820 6 LEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELE 50 (82)
Q Consensus 6 leeelr~rmR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE 50 (82)
+.+||+ +++.-|+.....+..-..-|.-+..||.-|++-++|+-
T Consensus 16 ~~eEL~-kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 16 IQEELT-KVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344554 45666666666666666666667777777766666653
No 25
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.16 E-value=17 Score=27.63 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2820 16 GPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEML 74 (82)
Q Consensus 16 ~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmL 74 (82)
.|+..-+.+++.+.++...+..++.-.++.+.+++.+++.=.+.+.+-.+.+.++++.+
T Consensus 202 e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 202 EIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566777777777777777777777776666666555555555555544444443
No 26
>KOG2391|consensus
Probab=81.97 E-value=22 Score=29.52 Aligned_cols=67 Identities=22% Similarity=0.280 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Q psy2820 4 RQLEEELRMRLRGPNLEMQNQIEVL---YTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNK 77 (82)
Q Consensus 4 rqleeelr~rmR~P~~E~q~q~e~l---~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~K 77 (82)
--.++-+|-|++ ..|+.+ +++..|...|+.+-..-|++++.++|.|.+.|++--+-.++-.++-++|
T Consensus 213 sa~~eklR~r~e-------eeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~ 282 (365)
T KOG2391|consen 213 SAVREKLRRRRE-------EEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEK 282 (365)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 344566666653 344444 4455566667888888888899999999998887766666666664443
No 27
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=81.72 E-value=7.6 Score=25.78 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDTIKELE 50 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE 50 (82)
.+++++++.++.+++.+..++.-|+.-++.|.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666666666666666666555554
No 28
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=81.22 E-value=9.4 Score=22.87 Aligned_cols=59 Identities=24% Similarity=0.379 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 3 VRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQ 61 (82)
Q Consensus 3 vrqleeelr~rmR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~ 61 (82)
+++++..|+-.++.-+-++|..|-.=|.+-=..++||.-++..+.++...+.+..+.+.
T Consensus 24 i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~ 82 (87)
T PF08700_consen 24 IRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQ 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888888888888888888888888888777777776665544
No 29
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=80.53 E-value=16 Score=25.75 Aligned_cols=50 Identities=24% Similarity=0.401 Sum_probs=25.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2820 25 IEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQ 75 (82)
Q Consensus 25 ~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq 75 (82)
++.|.+=.+.+..-|..| ..-.+...+|..-++...++|+.|+.++.-|.
T Consensus 4 ~~~L~~~d~~L~~~L~~l-~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~ 53 (188)
T PF10018_consen 4 AEDLIEADDELSSALEEL-QEHQENQARIQQLRAEIEELDEQIRDILKQLK 53 (188)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444 23344455666666666666666666655553
No 30
>PRK11637 AmiB activator; Provisional
Probab=79.49 E-value=22 Score=27.59 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKK 69 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkK 69 (82)
.+.++..+..+.+.+..++.-+.+.|.+++.+|+.++..+..|=-+.-+
T Consensus 87 ~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 87 ASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666666655544444
No 31
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.27 E-value=8.6 Score=22.64 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=24.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELEL 51 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~ 51 (82)
+....+.|.++++++.+|..-|+..+..+-.
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888877766543
No 32
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=79.20 E-value=9.4 Score=25.11 Aligned_cols=29 Identities=38% Similarity=0.510 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 31 ENEHLTREIGILRDTIKELELRIETQKQT 59 (82)
Q Consensus 31 e~er~~rE~~lLr~T~eElE~RietQkQT 59 (82)
+++++.+++..|++++..|=.||++.|.-
T Consensus 17 ~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E 45 (80)
T PF10224_consen 17 EKEELIQEILELQDSLEALSDRVEEVKEE 45 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888888888888877753
No 33
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=79.12 E-value=15 Score=31.10 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIE 54 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Rie 54 (82)
+++.+++.+.++|+.+.+|+.-||+.-..+..||.
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~ 104 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQ 104 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 67888999999999999999999886666666554
No 34
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=77.09 E-value=19 Score=28.33 Aligned_cols=56 Identities=21% Similarity=0.322 Sum_probs=30.5
Q ss_pred HHHHHHHHHHh------cCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 4 RQLEEELRMRL------RGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQT 59 (82)
Q Consensus 4 rqleeelr~rm------R~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQT 59 (82)
..+||-.|-=| -|--.-+..||+.|....+-+...++-+++.++|----++.||.+
T Consensus 87 ~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~ 148 (302)
T PF09738_consen 87 AEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRA 148 (302)
T ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555544 233344566666666666666666666665555444445555543
No 35
>PF10454 DUF2458: Protein of unknown function (DUF2458); InterPro: IPR018858 This entry represents a family of uncharacterised proteins.
Probab=76.59 E-value=24 Score=24.99 Aligned_cols=58 Identities=29% Similarity=0.303 Sum_probs=44.1
Q ss_pred HhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCC
Q psy2820 13 RLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVG 80 (82)
Q Consensus 13 rmR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~KG~~ 80 (82)
+.-.+|.+.++.+..|-.++.+..+...--|+.|- +.-.+|.++.|+|-+-|.+-|-|
T Consensus 17 ~~v~~n~~~~~~Ir~Li~~Q~~~Er~w~~~Re~l~----------~k~~~r~e~~k~l~~~l~s~g~~ 74 (150)
T PF10454_consen 17 KTVAQNPEFLQRIRRLIKEQHDHERQWWEGREALI----------AKQKARAEKKKKLDEVLRSVGGG 74 (150)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhcccc
Confidence 33467888889999998888888888877776663 23357888899998888888764
No 36
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=76.31 E-value=5.5 Score=23.17 Aligned_cols=21 Identities=52% Similarity=0.591 Sum_probs=8.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGIL 42 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lL 42 (82)
+.+++.+..+++.+..|+.-|
T Consensus 30 ~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 30 QKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333
No 37
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=75.62 E-value=21 Score=23.83 Aligned_cols=63 Identities=27% Similarity=0.408 Sum_probs=40.7
Q ss_pred hcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy2820 14 LRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQN 76 (82)
Q Consensus 14 mR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~ 76 (82)
++.-+.-++..+++|....+...+|+..+......++..+.+...++..=-+.+.|+--.+++
T Consensus 64 l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~ 126 (151)
T PF11559_consen 64 LRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQ 126 (151)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666777777666666667777777666666666666666655543
No 38
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=75.48 E-value=22 Score=23.92 Aligned_cols=54 Identities=26% Similarity=0.326 Sum_probs=46.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEML 74 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmL 74 (82)
+|-.++.|...|..+..|+.-++..=++++...+.=||...+=.+++..||--+
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567788899999999999999999988999888888888888888898888544
No 39
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.83 E-value=24 Score=24.00 Aligned_cols=52 Identities=27% Similarity=0.335 Sum_probs=44.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLE 72 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLE 72 (82)
+|-.++.|...|..++.|..-++...+.|+.+-+.=|+.-.+=.|-|+.||-
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788888888899999999999999999988888888888888888774
No 40
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=74.82 E-value=15 Score=30.93 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=33.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHH
Q psy2820 23 NQIEVLYTENEHLTREIGILRDTIKELELRIET----QKQTLQARDESIKKLLE 72 (82)
Q Consensus 23 ~q~e~l~~e~er~~rE~~lLr~T~eElE~Riet----QkQTL~aRDESIkKLLE 72 (82)
.|.-+|+.||+++.+|+.-|+.-++.||...-+ -++++. |+-++++++
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~--dv~~d~i~K 83 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETN--DVIYDKIVK 83 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH--HHHHHHHHH
Confidence 456678888888888888888888888765542 344443 556666655
No 41
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=74.80 E-value=26 Score=24.49 Aligned_cols=49 Identities=24% Similarity=0.511 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIE---TQKQTLQARDESIK 68 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Rie---tQkQTL~aRDESIk 68 (82)
....+++.+....+.+...+.-|+..+.+|+.+|. +++.+|.||..+.+
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~ 146 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAK 146 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888889999999999999999998875 56778888876544
No 42
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=74.63 E-value=24 Score=23.97 Aligned_cols=56 Identities=18% Similarity=0.356 Sum_probs=34.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQN 76 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~ 76 (82)
....++.+........+|+.-+++.+.+.+.+++..++++..=++.-..+.+++++
T Consensus 128 ~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (191)
T PF04156_consen 128 VEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQE 183 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666677766666665555555555555543
No 43
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=74.61 E-value=36 Score=29.12 Aligned_cols=59 Identities=25% Similarity=0.277 Sum_probs=37.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHhhcCCC
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTL---QARDESIKKLLEMLQNKGVG 80 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL---~aRDESIkKLLEmLq~KG~~ 80 (82)
+..++.|...+.-+.++..-|.....+.|.||..+-.++ ..+.+...+||+-++|-..+
T Consensus 93 ~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t 154 (617)
T PF15070_consen 93 RKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKAT 154 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchH
Confidence 444445555555555556666666677777776655443 44556688999999886543
No 44
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=74.49 E-value=8.6 Score=26.43 Aligned_cols=33 Identities=33% Similarity=0.408 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDTIKELEL 51 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~ 51 (82)
.++.+++..|-.||-++.-|+.-||+-+.+++.
T Consensus 25 ~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 25 GALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467888999999999999999999999998743
No 45
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=73.95 E-value=31 Score=24.97 Aligned_cols=45 Identities=31% Similarity=0.431 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2820 18 NLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQA 62 (82)
Q Consensus 18 ~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~a 62 (82)
..+++.++..|.++.+.+...+.-|.++|.+++.+...+.+.+.+
T Consensus 218 ~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~ 262 (312)
T PF00038_consen 218 LKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQA 262 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 356677778888888888877888888888888877777665444
No 46
>KOG0804|consensus
Probab=73.85 E-value=20 Score=30.86 Aligned_cols=52 Identities=35% Similarity=0.514 Sum_probs=37.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQ 75 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq 75 (82)
.+.+...+..+|.-+.+.....+.+++++|.+ ++-++.+.|++|..|=|-|.
T Consensus 394 ~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~---~~~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 394 CQKELKEEREENKKLIKNQDVWRGKLKELEER---EKEALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666677778888888755 56667889999999888664
No 47
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=72.65 E-value=9.4 Score=24.95 Aligned_cols=30 Identities=20% Similarity=0.112 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKEL 49 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eEl 49 (82)
+.+.++..|..++.++..|+.+|.++++=.
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~~~ 104 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVEYG 104 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356778888888888888999988887543
No 48
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=72.13 E-value=31 Score=30.60 Aligned_cols=54 Identities=33% Similarity=0.531 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhhHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQ----------TLQARDESIKKLLEML 74 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQ----------TL~aRDESIkKLLEmL 74 (82)
+...+++|..||..+.+++.-+++++++|+.+++.=+- .+.+||+-|.+|=--|
T Consensus 427 ~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L 490 (652)
T COG2433 427 LEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKEL 490 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34455566666666666655555555555555443221 2455666665553333
No 49
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=71.52 E-value=9.5 Score=25.32 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRD 44 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~ 44 (82)
.+++++.+.+.++|+.+.+|+..|++
T Consensus 37 ~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 37 AAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45677777777778888777777765
No 50
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=71.46 E-value=24 Score=22.58 Aligned_cols=48 Identities=27% Similarity=0.348 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEM 73 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEm 73 (82)
.|+++++..|-.||. -|++||+---.-+-.+--+|.+-.+++++--+-
T Consensus 2 ~e~~~~l~~LL~EN~-------~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~ 49 (68)
T PF11577_consen 2 EEMQQQLQELLQENQ-------DLKEALRQNNQAMKERFEELLAWQEKQKEEREF 49 (68)
T ss_dssp -----HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666655553 445555555555555555555555555544333
No 51
>smart00338 BRLZ basic region leucin zipper.
Probab=71.31 E-value=10 Score=22.30 Aligned_cols=37 Identities=30% Similarity=0.329 Sum_probs=20.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 23 NQIEVLYTENEHLTREIGILRDTIKELELRIETQKQT 59 (82)
Q Consensus 23 ~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQT 59 (82)
+.++.|..+...+..|+.-|+..+..|+..+..-++.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555565555555554443
No 52
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=70.44 E-value=7.5 Score=28.40 Aligned_cols=27 Identities=37% Similarity=0.624 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy2820 45 TIKELELRIETQKQTLQARDESIKKLL 71 (82)
Q Consensus 45 T~eElE~RietQkQTL~aRDESIkKLL 71 (82)
++..|+..+|.=|..|..=||+||||.
T Consensus 4 av~~Lq~qlE~Ake~Lk~vDenIkKlt 30 (134)
T PF04697_consen 4 AVRTLQAQLEKAKESLKNVDENIKKLT 30 (134)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHh
Confidence 567788888889999999999999986
No 53
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=69.68 E-value=47 Score=25.25 Aligned_cols=51 Identities=31% Similarity=0.381 Sum_probs=23.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTIKELELRIE---TQKQTLQARDESIKKLLE 72 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~eElE~Rie---tQkQTL~aRDESIkKLLE 72 (82)
++++..+..+.+...+++.-++..+++++..|+ .|++.+.+.-.+.++.++
T Consensus 215 r~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 215 RQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443332 355555555555554444
No 54
>smart00338 BRLZ basic region leucin zipper.
Probab=69.30 E-value=21 Score=21.01 Aligned_cols=36 Identities=33% Similarity=0.471 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy2820 16 GPNLEMQNQIEVLYTENEHLTREIGILRDTIKELEL 51 (82)
Q Consensus 16 ~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~ 51 (82)
.--.++..+++.|.++|+.+..++.-|+..+..|..
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334577888888888888888888888877776654
No 55
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=68.71 E-value=31 Score=23.39 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQ 61 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~ 61 (82)
..++++.|+.|.++....+.---+.|++||..+..+.....
T Consensus 39 ~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~ 79 (160)
T PF13094_consen 39 NLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALERERE 79 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888888888888888888888777665543
No 56
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=68.49 E-value=46 Score=24.70 Aligned_cols=49 Identities=29% Similarity=0.400 Sum_probs=31.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy2820 25 IEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEM 73 (82)
Q Consensus 25 ~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEm 73 (82)
...+..|++++..|+.-|+..++.||..++.=.+.+..=.|..+-|+..
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~I 147 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDI 147 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777778887788888877777666555555545555555443
No 57
>PRK10884 SH3 domain-containing protein; Provisional
Probab=68.08 E-value=46 Score=24.58 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2820 35 LTREIGILRDTIKELELRI 53 (82)
Q Consensus 35 ~~rE~~lLr~T~eElE~Ri 53 (82)
+..|+.-|++.+..+...+
T Consensus 137 L~~~n~~L~~~l~~~~~~~ 155 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKV 155 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 58
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=67.61 E-value=43 Score=25.37 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=24.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2820 25 IEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEML 74 (82)
Q Consensus 25 ~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmL 74 (82)
+..+++||+++.+|+.-| ..+...+.+.+.+-.+..++||++=
T Consensus 68 ~~~l~~EN~~Lr~e~~~l-------~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKK-------NQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 344566666666655544 3344444444666666677777653
No 59
>KOG0971|consensus
Probab=67.10 E-value=50 Score=31.28 Aligned_cols=40 Identities=35% Similarity=0.598 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2820 35 LTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEML 74 (82)
Q Consensus 35 ~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmL 74 (82)
+-.||..+.-.++|++-|+++--.|+--||-.|+|.=|..
T Consensus 495 LreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelv 534 (1243)
T KOG0971|consen 495 LREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELV 534 (1243)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5578889989999999999999999999999999987654
No 60
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=66.98 E-value=30 Score=22.00 Aligned_cols=51 Identities=33% Similarity=0.389 Sum_probs=32.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2820 25 IEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQ 75 (82)
Q Consensus 25 ~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq 75 (82)
+..|+-|++.+..+..-|.+.-++|....+.-++.-.+=.+.|+.||.-|.
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445555555555555555555666666666666666777777888887654
No 61
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=66.78 E-value=7.9 Score=22.42 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHHH
Q psy2820 18 NLEMQNQIEVLYTENEHLTREIGIL 42 (82)
Q Consensus 18 ~~E~q~q~e~l~~e~er~~rE~~lL 42 (82)
..+|.+.+..|..+|..+..++..|
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444
No 62
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=66.75 E-value=39 Score=24.30 Aligned_cols=47 Identities=23% Similarity=0.415 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2820 29 YTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQ 75 (82)
Q Consensus 29 ~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq 75 (82)
....+.+.+++.-+.+.++.++.|++...+.|.++=-....++--|+
T Consensus 192 ~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~me~~i~~ln 238 (239)
T PF07195_consen 192 TSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQFSAMESLISQLN 238 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555666777777788888888888888888777666666655554
No 63
>PRK09039 hypothetical protein; Validated
Probab=66.45 E-value=52 Score=25.58 Aligned_cols=7 Identities=29% Similarity=0.520 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy2820 40 GILRDTI 46 (82)
Q Consensus 40 ~lLr~T~ 46 (82)
.-||..+
T Consensus 147 ~aLr~Ql 153 (343)
T PRK09039 147 AALRRQL 153 (343)
T ss_pred HHHHHHH
Confidence 3333333
No 64
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=65.68 E-value=37 Score=22.63 Aligned_cols=54 Identities=17% Similarity=0.370 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEM 73 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEm 73 (82)
.+...+-.+.++++++...+.-|.+.++++|-.+.+......+=...++.+-..
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~ 109 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAK 109 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888999999999999999999999888876655555544445444433
No 65
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=65.48 E-value=33 Score=21.87 Aligned_cols=26 Identities=38% Similarity=0.402 Sum_probs=13.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 28 LYTENEHLTREIGILRDTIKELELRI 53 (82)
Q Consensus 28 l~~e~er~~rE~~lLr~T~eElE~Ri 53 (82)
|..+.+.+.+|+.-+++.+.+++..|
T Consensus 48 LKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 48 LKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555555554443
No 66
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=64.89 E-value=36 Score=22.14 Aligned_cols=70 Identities=21% Similarity=0.332 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCCC--HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy2820 3 VRQLEEELRMRLRGPN--LEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLE 72 (82)
Q Consensus 3 vrqleeelr~rmR~P~--~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLE 72 (82)
+..||.-+-.|.-..+ -++...++.|.+...+++.|+.-...-...+|---..=.+.|.+=.|.|+-+|+
T Consensus 17 id~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL~ 88 (89)
T PF13747_consen 17 IDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVLD 88 (89)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666555553222 588999999999999999999877777777776666666777778888887764
No 67
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=64.77 E-value=51 Score=23.90 Aligned_cols=65 Identities=23% Similarity=0.310 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHh---cCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy2820 2 LVRQLEEELRMRL---RGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESI 67 (82)
Q Consensus 2 lvrqleeelr~rm---R~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESI 67 (82)
++.+||||-+ |. ..-|.=++.|+|.....|+.+..|+.-|+.-+..+...++.-........+++
T Consensus 65 ~l~rLeEEqq-R~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~ 132 (182)
T PF15035_consen 65 ALIRLEEEQQ-RSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENF 132 (182)
T ss_pred HHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888855 21 12333478888888888888888887766655554333333333333444443
No 68
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=64.44 E-value=25 Score=23.10 Aligned_cols=45 Identities=36% Similarity=0.431 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHH-------HhhhHHHHHHHHHHHHHHHHHH
Q psy2820 5 QLEEELRMRLRGPNLEMQNQIEV-------LYTENEHLTREIGILRDTIKEL 49 (82)
Q Consensus 5 qleeelr~rmR~P~~E~q~q~e~-------l~~e~er~~rE~~lLr~T~eEl 49 (82)
.++.|-|-++..--.++|..++. ...||+.+..|+..|.+-|..|
T Consensus 12 ~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 12 KLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666676776666677766554 4567777888888888777766
No 69
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=64.05 E-value=25 Score=20.35 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=10.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDT 45 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T 45 (82)
++++..+.++.+.+..|+.-|..-
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~e 46 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEE 46 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333
No 70
>PRK09039 hypothetical protein; Validated
Probab=61.91 E-value=74 Score=24.76 Aligned_cols=42 Identities=19% Similarity=0.273 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTL 60 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL 60 (82)
.|.+.+|..|.++.+.+.+-+.-|...|...|.+...++..+
T Consensus 133 se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i 174 (343)
T PRK09039 133 ARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKI 174 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555544444333
No 71
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=61.63 E-value=31 Score=25.00 Aligned_cols=42 Identities=33% Similarity=0.516 Sum_probs=22.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy2820 24 QIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEM 73 (82)
Q Consensus 24 q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEm 73 (82)
....+++||+++.+|+..|+.-+.+++ .+.+--+..++||.+
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~--------~l~~en~~L~~lL~~ 111 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELE--------QLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcC
Confidence 445566666666666666655544432 333344455555554
No 72
>KOG4571|consensus
Probab=61.52 E-value=34 Score=27.61 Aligned_cols=41 Identities=32% Similarity=0.308 Sum_probs=35.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQA 62 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~a 62 (82)
+...|.+-.|.+-+.+++.-|++++.+||..|.-=||.+.+
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999988887654
No 73
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=61.17 E-value=55 Score=23.49 Aligned_cols=43 Identities=30% Similarity=0.439 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQ 61 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~ 61 (82)
.++..++..|..+.+.+..++.-++...+.++.+.+..++...
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~ 165 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEE 165 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777777777777777776665543
No 74
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=61.15 E-value=59 Score=23.35 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=35.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIE---TQKQTLQARDESIK 68 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Rie---tQkQTL~aRDESIk 68 (82)
.+++++.|..+++.+..-+.-|...+.+|+..|+ +.+.+|.||-.+.+
T Consensus 97 ~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~ 147 (219)
T TIGR02977 97 AQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAAS 147 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888888888888888888887765 56677777765544
No 75
>PF15058 Speriolin_N: Speriolin N terminus
Probab=60.71 E-value=17 Score=28.00 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=22.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDT 45 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T 45 (82)
+.+||++|-.||+++.|-+.++|+-
T Consensus 10 lrhqierLv~ENeeLKKlVrLirEN 34 (200)
T PF15058_consen 10 LRHQIERLVRENEELKKLVRLIREN 34 (200)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4899999999999999998888864
No 76
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=60.59 E-value=45 Score=21.87 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=17.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy2820 23 NQIEVLYTENEHLTREIGILRDTIKELEL 51 (82)
Q Consensus 23 ~q~e~l~~e~er~~rE~~lLr~T~eElE~ 51 (82)
+.++.|.++++.++.=+.--.+++++|-.
T Consensus 25 ~~i~~L~a~n~~q~~tI~qq~~~~~~L~~ 53 (110)
T PF10828_consen 25 QRIDRLRAENKAQAQTIQQQEDANQELKA 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777766665544444444433
No 77
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=59.97 E-value=78 Score=24.40 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=12.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKE 48 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eE 48 (82)
+.++++.|..|.+.+.+|+.-|....++
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~~ 89 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELEE 89 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333
No 78
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=59.45 E-value=14 Score=22.11 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=8.3
Q ss_pred HHHHHHHhhhHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIG 40 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~ 40 (82)
+++++.+++||+++..|+.
T Consensus 37 ~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 37 QLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 79
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=59.45 E-value=9.9 Score=24.48 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2820 37 REIGILRDTIKELELRIE 54 (82)
Q Consensus 37 rE~~lLr~T~eElE~Rie 54 (82)
.|+..|+++|.||+.|+.
T Consensus 14 EEVevLK~~I~eL~~~n~ 31 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNS 31 (59)
T ss_dssp TSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578999999999998875
No 80
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=57.97 E-value=49 Score=21.46 Aligned_cols=51 Identities=24% Similarity=0.314 Sum_probs=39.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC
Q psy2820 26 EVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGV 79 (82)
Q Consensus 26 e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~KG~ 79 (82)
+.+..-...+..|+..+|.|+-+||..-..-|+.- .+-|.+|=..|.+.|.
T Consensus 28 ~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y---EeEI~rLr~eLe~r~~ 78 (79)
T PF08581_consen 28 DEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY---EEEIARLRRELEQRGR 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhCC
Confidence 33444456678899999999999998777766665 6788888888877763
No 81
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=57.68 E-value=37 Score=19.93 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=27.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTIKELELRIETQK 57 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQk 57 (82)
.+.++.|....+.+..|+.-|++.+..|...+.+-+
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888777666543
No 82
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=57.59 E-value=78 Score=24.76 Aligned_cols=58 Identities=26% Similarity=0.354 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH------------HH----HHHHHHHHhhHHHHHHHHHHHhhc
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDTIKELEL------------RI----ETQKQTLQARDESIKKLLEMLQNK 77 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~------------Ri----etQkQTL~aRDESIkKLLEmLq~K 77 (82)
..+++|++.|.+.......|+..|+ |-++.|+ .| ++|..-+..-.+.++..+..|.++
T Consensus 84 ~~Lq~ql~~l~akI~k~~~el~~L~-TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~ 157 (258)
T PF15397_consen 84 SKLQQQLEQLDAKIQKTQEELNFLS-TYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRK 157 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999998886 3333443 33 456777777788888888777654
No 83
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=57.55 E-value=94 Score=26.82 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=9.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDT 45 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T 45 (82)
|.+++....|++.+.++...|.+.
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e 165 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEE 165 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444333333333333333333
No 84
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=56.61 E-value=55 Score=21.63 Aligned_cols=50 Identities=24% Similarity=0.293 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy2820 18 NLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESI 67 (82)
Q Consensus 18 ~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESI 67 (82)
--++++..+.+.++|..+++.+--+...++++-.++..+...+..--.+.
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~ 78 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEY 78 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777777888887777665555555555555554444444433333
No 85
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=56.37 E-value=22 Score=23.70 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=10.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHH
Q psy2820 25 IEVLYTENEHLTREIGILRDTIKEL 49 (82)
Q Consensus 25 ~e~l~~e~er~~rE~~lLr~T~eEl 49 (82)
++.+..+.+.+...+.-+...++.+
T Consensus 20 l~~l~~~~~~l~~~~~r~~ae~en~ 44 (165)
T PF01025_consen 20 LEELEKEIEELKERLLRLQAEFENY 44 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 86
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=56.26 E-value=52 Score=24.91 Aligned_cols=8 Identities=50% Similarity=0.501 Sum_probs=3.2
Q ss_pred HhhhHHHH
Q psy2820 28 LYTENEHL 35 (82)
Q Consensus 28 l~~e~er~ 35 (82)
+..||+++
T Consensus 96 l~~EN~rL 103 (283)
T TIGR00219 96 LKQENVRL 103 (283)
T ss_pred HHHHHHHH
Confidence 33444443
No 87
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=55.73 E-value=1e+02 Score=24.31 Aligned_cols=36 Identities=31% Similarity=0.476 Sum_probs=24.5
Q ss_pred CCC-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy2820 16 GPN-LEMQNQIEVLYTENEHLTREIGILRDTIKELEL 51 (82)
Q Consensus 16 ~P~-~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~ 51 (82)
+.+ .++.++++.|..+......++.-+.+.+..+..
T Consensus 326 g~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 326 GVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 445 777777777777777777777666666655544
No 88
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=55.41 E-value=69 Score=22.33 Aligned_cols=56 Identities=25% Similarity=0.352 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy2820 17 PNLEMQNQIEVLYTENEHLTREI------------GILRDTIKELELRIETQKQTLQARDESIKKLLE 72 (82)
Q Consensus 17 P~~E~q~q~e~l~~e~er~~rE~------------~lLr~T~eElE~RietQkQTL~aRDESIkKLLE 72 (82)
|....-.+...|+.|...+.+|+ +-|+..+..++..+++.++.+.+...++++.+-
T Consensus 34 ~~~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~ 101 (161)
T PF04420_consen 34 PSSKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLS 101 (161)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455666777777777776 447888999999999999999988888877654
No 89
>PF04772 Flu_B_M2: Influenza B matrix protein 2 (BM2); InterPro: IPR006859 BM2 is synthesised in the late phase of infection and incorporated into the virion. It may be phosphorylated in vivo. The function of BM2 is unknown [].; PDB: 2LJB_D 2LJC_A 2KIX_B 2KJ1_C.
Probab=55.30 E-value=38 Score=23.99 Aligned_cols=24 Identities=38% Similarity=0.805 Sum_probs=10.1
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2820 10 LRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTI 46 (82)
Q Consensus 10 lr~rmR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~ 46 (82)
+.+|+|+||-| .+.||++|||-..
T Consensus 37 ~ki~i~~pnke-------------~~nrevsilrh~y 60 (109)
T PF04772_consen 37 MKIQIRNPNKE-------------TINREVSILRHNY 60 (109)
T ss_dssp ---------HH-------------HHHHHHHHHHHHH
T ss_pred eEEEEcCCCHH-------------HhhHHHHHHHHHH
Confidence 56788999975 3567888887643
No 90
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=54.88 E-value=77 Score=27.03 Aligned_cols=48 Identities=27% Similarity=0.375 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2820 16 GPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQAR 63 (82)
Q Consensus 16 ~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aR 63 (82)
.+--+++.+++.+.++.+....|+.-+...++.++..++..+......
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~l 375 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEEL 375 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888888888888888888888888888887777666555444
No 91
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=54.54 E-value=1.2e+02 Score=26.23 Aligned_cols=31 Identities=35% Similarity=0.563 Sum_probs=12.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 23 NQIEVLYTENEHLTREIGILRDTIKELELRI 53 (82)
Q Consensus 23 ~q~e~l~~e~er~~rE~~lLr~T~eElE~Ri 53 (82)
+..+.|..++..+.+|+.-|++-++.|+..+
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL 180 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAEL 180 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444443333
No 92
>PRK10698 phage shock protein PspA; Provisional
Probab=54.38 E-value=84 Score=23.05 Aligned_cols=55 Identities=20% Similarity=0.328 Sum_probs=39.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHH---HHHHHHh
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIE---TQKQTLQARDESIK---KLLEMLQ 75 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Rie---tQkQTL~aRDESIk---KLLEmLq 75 (82)
...++..|..+++.+..-+.-|...+..|+..|+ +.+.+|.||-.+.+ ++=+++.
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~ 157 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLD 157 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777888888888888888888888887764 57788888876554 3444443
No 93
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=54.21 E-value=23 Score=21.18 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 30 TENEHLTREIGILRDTIKELELRIETQK 57 (82)
Q Consensus 30 ~e~er~~rE~~lLr~T~eElE~RietQk 57 (82)
|-..+-..|+..|..-++||+..++.|+
T Consensus 15 Ak~~~r~dEV~~L~~NL~EL~~e~~~qq 42 (42)
T PF11464_consen 15 AKAARRFDEVATLEENLRELQDEIDEQQ 42 (42)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHhcC
Confidence 3445566799999999999999998874
No 94
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=53.89 E-value=31 Score=21.60 Aligned_cols=41 Identities=20% Similarity=0.396 Sum_probs=19.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy2820 26 EVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEM 73 (82)
Q Consensus 26 e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEm 73 (82)
+.+.++..++.-.+.-+++..+++- -++..=+++||+|+.+
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~-------~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEIS-------ESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443 3334445556666643
No 95
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=52.55 E-value=60 Score=23.23 Aligned_cols=34 Identities=35% Similarity=0.500 Sum_probs=18.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTIKELELRIET 55 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~eElE~Riet 55 (82)
-.+++.+.++.+.+..++..|+.++.|+..-++|
T Consensus 12 ~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~t 45 (145)
T COG1730 12 AAQLQILQSQIESLQAQIAALNAAISELQTAIET 45 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555666665555555544443
No 96
>KOG2010|consensus
Probab=51.54 E-value=98 Score=26.21 Aligned_cols=50 Identities=30% Similarity=0.443 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKK 69 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkK 69 (82)
|...|+..-+.|++...+|+.-+..|+.-|.-..+.=||-|.-||+-|.+
T Consensus 158 E~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeliee 207 (405)
T KOG2010|consen 158 EQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEE 207 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677788888888888888888888888888888889887665
No 97
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=50.99 E-value=63 Score=21.96 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhhHHHH
Q psy2820 50 ELRIETQKQTLQARDESI 67 (82)
Q Consensus 50 E~RietQkQTL~aRDESI 67 (82)
+..|+.|++.|..-|+.|
T Consensus 82 ~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 82 KEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 333444444444444333
No 98
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=50.94 E-value=1e+02 Score=23.09 Aligned_cols=47 Identities=23% Similarity=0.399 Sum_probs=30.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTIKELELRI---ETQKQTLQARDESIK 68 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~eElE~Ri---etQkQTL~aRDESIk 68 (82)
.++...+.++...+..=+.-|+.-+..||.+| +++++.+.||.-+.+
T Consensus 98 e~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~ak 147 (225)
T COG1842 98 EDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAK 147 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555566777777777766 478888888875543
No 99
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=50.85 E-value=59 Score=27.65 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=12.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 28 LYTENEHLTREIGILRDTIKELELRIETQ 56 (82)
Q Consensus 28 l~~e~er~~rE~~lLr~T~eElE~RietQ 56 (82)
|..+.+.+..|+.++....+++|.+|+.+
T Consensus 81 LEKqLaaLrqElq~~saq~~dle~KIkeL 109 (475)
T PRK13729 81 MQKQYEEIRRELDVLNKQRGDDQRRIEKL 109 (475)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 33333333344444444444444444433
No 100
>smart00340 HALZ homeobox associated leucin zipper.
Probab=50.42 E-value=21 Score=22.00 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=17.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHH
Q psy2820 24 QIEVLYTENEHLTREIGILRD 44 (82)
Q Consensus 24 q~e~l~~e~er~~rE~~lLr~ 44 (82)
=-+.|-.||.|+.+|+.-||.
T Consensus 13 cce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 13 CCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 357788899999999988774
No 101
>PF09302 XLF: XLF (XRCC4-like factor); InterPro: IPR015381 XLF (also called Cernunnos) interacts with the XRCC4-DNA ligase IV complex to promote DNA non-homologous end-joining. It directly interacts with the XRCC4-Ligase IV complex and siRNA-mediated downregulation of XLF in human cell lines leads to radio-sensitivity and impaired DNA non-homologous end-joining []. XLF is homologous to the yeast non-homologous end-joining factor Nej1 []. ; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z56_A 3RWR_D 3Q4F_A 3SR2_H 2R9A_A 2QM4_C.
Probab=50.25 E-value=55 Score=22.09 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2820 41 ILRDTIKELELRIETQKQTLQARDESIKKLLEML 74 (82)
Q Consensus 41 lLr~T~eElE~RietQkQTL~aRDESIkKLLEmL 74 (82)
-+-.+...++.+++..+..|..+|..|++|.+-+
T Consensus 136 Pll~~~~~l~~~~~~L~~~l~~KD~~i~~l~~~~ 169 (171)
T PF09302_consen 136 PLLRMSSALQRQVESLKDLLKEKDKEIEKLRDKL 169 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556777889999999999999999999998744
No 102
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=50.04 E-value=51 Score=27.55 Aligned_cols=35 Identities=34% Similarity=0.480 Sum_probs=30.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIET 55 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Riet 55 (82)
...++..|..+++.+.+|+..|+..++.||.+|+.
T Consensus 501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 501 LSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999985
No 103
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=50.02 E-value=61 Score=20.17 Aligned_cols=35 Identities=37% Similarity=0.611 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCC
Q psy2820 44 DTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVG 80 (82)
Q Consensus 44 ~T~eElE~RietQkQTL~aRDESIkKLLEmLq~KG~~ 80 (82)
.-+++++..|+..+ ...|.+.|.++.+++..-|+.
T Consensus 5 ~~~~~l~~~~~~~~--~~e~~~~~~~i~~~~~~~Gis 39 (93)
T PF00816_consen 5 AQIKELEKEIEERR--KQEREEAIAEIRELMAEYGIS 39 (93)
T ss_dssp HHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCC
Confidence 33445555554433 345888888888888888864
No 104
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=49.96 E-value=96 Score=22.43 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 32 NEHLTREIGILRDTIKELELRIETQKQ 58 (82)
Q Consensus 32 ~er~~rE~~lLr~T~eElE~RietQkQ 58 (82)
......|+.-++..+..++..+++++.
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~ 237 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRA 237 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhcccc
Confidence 334444455555555555555554443
No 105
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=49.65 E-value=53 Score=24.25 Aligned_cols=44 Identities=34% Similarity=0.410 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCCC
Q psy2820 33 EHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGL 81 (82)
Q Consensus 33 er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~KG~~~ 81 (82)
+.+.+|+.-|+++|+.+=..+.. ..+++.+..+.+.|...|++.
T Consensus 107 ~~~~~e~~~lk~~l~~~~~~~~~-----~~~~~~l~~l~~~L~~~gv~~ 150 (282)
T TIGR03499 107 EELRKELEALRELLERLLAGLAW-----LQRDPEGAKLLERLLRAGVSP 150 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh-----cccCHHHHHHHHHHHHCCCCH
Confidence 45667787777777655433222 246788889999999999873
No 106
>PRK14011 prefoldin subunit alpha; Provisional
Probab=49.40 E-value=81 Score=22.26 Aligned_cols=38 Identities=34% Similarity=0.364 Sum_probs=25.5
Q ss_pred CHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 18 NLEMQNQI---EVLYTENEHLTREIGILRDTIKELELRIET 55 (82)
Q Consensus 18 ~~E~q~q~---e~l~~e~er~~rE~~lLr~T~eElE~Riet 55 (82)
|-|+++.+ +.+..+.++++.++..|+.+..+...-|++
T Consensus 2 ~~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~ 42 (144)
T PRK14011 2 NEELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIES 42 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555544 777777888888888887777776555443
No 107
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=49.31 E-value=1.2e+02 Score=23.37 Aligned_cols=50 Identities=28% Similarity=0.403 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIK 68 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIk 68 (82)
.+...+++.+..|.+.+..|+.-|.+.-++++..|.+.......-++...
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~ 95 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEE 95 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777776665544444444333
No 108
>PF08641 Mis14: Kinetochore protein Mis14 like; InterPro: IPR013950 Mis14 is a kinetochore protein which is known to be recruited to kinetochores independently of CENP-A [].
Probab=49.25 E-value=82 Score=21.39 Aligned_cols=51 Identities=25% Similarity=0.464 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhHHHH
Q psy2820 17 PNLEMQNQIEVLYTENEHLTREIGILRDTI-----KELELRIETQKQTLQARDESI 67 (82)
Q Consensus 17 P~~E~q~q~e~l~~e~er~~rE~~lLr~T~-----eElE~RietQkQTL~aRDESI 67 (82)
-+.++..++..|+.+.|.+.-+++-||+++ +.....++.+...|..-|+-|
T Consensus 34 fD~~L~~rv~~l~~~~e~~~v~va~lRr~~P~~i~~~~~~~~~~~~~~L~~~~~~v 89 (139)
T PF08641_consen 34 FDLELNERVRSLYDQLEDLTVEVAQLRRDYPRKIAEAYAKSLKAEREILEEYDEEV 89 (139)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999999999998764 444444555555555555544
No 109
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=48.82 E-value=41 Score=27.07 Aligned_cols=28 Identities=36% Similarity=0.432 Sum_probs=23.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy2820 23 NQIEVLYTENEHLTREIGILRDTIKELE 50 (82)
Q Consensus 23 ~q~e~l~~e~er~~rE~~lLr~T~eElE 50 (82)
+..-.|++||+++.+|+..|+..+..++
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e 84 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYE 84 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999977766544
No 110
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=48.67 E-value=1e+02 Score=22.43 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=25.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy2820 24 QIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKK 69 (82)
Q Consensus 24 q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkK 69 (82)
+.+.+.++.+.+..++..++..++.++.+++..++.+..-.+.+.+
T Consensus 138 ~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~ 183 (423)
T TIGR01843 138 RKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEA 183 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666666666666666555555444444333
No 111
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=48.22 E-value=71 Score=20.39 Aligned_cols=59 Identities=19% Similarity=0.393 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHhhc
Q psy2820 16 GPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQ-KQTLQARDESIKKLLEMLQNK 77 (82)
Q Consensus 16 ~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQ-kQTL~aRDESIkKLLEmLq~K 77 (82)
.|...+-.=+..|+.|.+|+.-|..-|.+.++.|.--.... +..|. ..++.|+.-+-.|
T Consensus 10 ~p~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~---~~l~~lv~~mE~K 69 (79)
T PF06657_consen 10 SPGEALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLE---QELEELVKRMEAK 69 (79)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHH---HHHHHHHHHHHHH
Confidence 35555666677788888888888888877777665544332 22222 2344555444444
No 112
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=48.04 E-value=60 Score=24.67 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=30.8
Q ss_pred HHHhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 11 RMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQ 56 (82)
Q Consensus 11 r~rmR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQ 56 (82)
|.|-..=--+...++++|...+.++..++..-+.-+|-| +-||-|
T Consensus 118 r~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnL-TDIERQ 162 (179)
T PF13942_consen 118 RARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENL-TDIERQ 162 (179)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHH
Confidence 444433334556688899999999998888777766665 456665
No 113
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=48.03 E-value=69 Score=25.95 Aligned_cols=52 Identities=27% Similarity=0.451 Sum_probs=31.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy2820 25 IEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQN 76 (82)
Q Consensus 25 ~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~ 76 (82)
++.|..|.+++.-|+..|+.-|+.+...+..-...+.+.-++.++.+.-++.
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~ 327 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQ 327 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4556666667777777777666666655555555555555666665555443
No 114
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=47.56 E-value=88 Score=21.28 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=9.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILR 43 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr 43 (82)
++.++..+.++...+..|+.-|.
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444443333
No 115
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=46.93 E-value=1.5e+02 Score=23.86 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=30.1
Q ss_pred cCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy2820 15 RGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKL 70 (82)
Q Consensus 15 R~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKL 70 (82)
...+..++.+++.|..+.....+...-+......++..|...+++..+-.++-..+
T Consensus 102 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~r~~~~~~l~~~~~~l 157 (779)
T PRK11091 102 LELNVQLKDNIAQLNQEIAEREKAEEARQEAFEQLKNEIKEREETQIELEQQSSLL 157 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555556666655544443333445556677777766666555444443333
No 116
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=46.86 E-value=90 Score=21.25 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 34 HLTREIGILRDTIKELELRIETQKQ 58 (82)
Q Consensus 34 r~~rE~~lLr~T~eElE~RietQkQ 58 (82)
.+..++.-|...+++|+..++.|++
T Consensus 109 ~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 109 ELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566667777777777776654
No 117
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=46.82 E-value=85 Score=20.92 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=21.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy2820 24 QIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKK 69 (82)
Q Consensus 24 q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkK 69 (82)
++..+..+...+..+..-.+.++.+.+.-.+.||+.|..--..+++
T Consensus 67 e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 67 ELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQ 112 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444555555555555555555544433333
No 118
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=46.78 E-value=83 Score=20.78 Aligned_cols=48 Identities=29% Similarity=0.288 Sum_probs=21.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy2820 25 IEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLE 72 (82)
Q Consensus 25 ~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLE 72 (82)
+..+..+.+.+..++.-|-+..-+++-+++..|..+..+-.+++.|-.
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~ 76 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELES 76 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555545444445555555555555555555554443
No 119
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=46.49 E-value=64 Score=19.35 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHH
Q psy2820 53 IETQKQTLQARDESIKKLLEM 73 (82)
Q Consensus 53 ietQkQTL~aRDESIkKLLEm 73 (82)
+..|++.+...=.++..+.+.
T Consensus 77 l~~q~~~l~~~l~~l~~~~~~ 97 (127)
T smart00502 77 LEQQLESLTQKQEKLSHAINF 97 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443344433333
No 120
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=46.31 E-value=84 Score=20.68 Aligned_cols=53 Identities=15% Similarity=0.416 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQ 75 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq 75 (82)
.++-+++++|+..-+.+..=+ ..+.++..++++|-.+|.+=.-.+...-.+|-
T Consensus 14 k~vd~KVdaLq~~V~~l~~~~----~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 14 KAVDDKVDALQTQVDDLESNL----PDVTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 356677777777665554332 56778999999998888877777777777764
No 121
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=46.09 E-value=77 Score=26.96 Aligned_cols=36 Identities=25% Similarity=0.233 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 18 NLEMQNQIEVLYTENEHLTREIGILRDTIKELELRI 53 (82)
Q Consensus 18 ~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Ri 53 (82)
..|++++++.+..|.+-+.+...-+...|+++|..+
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~ 113 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDN 113 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 345555666665555533333334444444444433
No 122
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=45.61 E-value=64 Score=26.84 Aligned_cols=41 Identities=39% Similarity=0.454 Sum_probs=34.5
Q ss_pred cCCCHHHHHHHHHHhhhHHHH-------HHHHHHHHHHHHHHHHHHHH
Q psy2820 15 RGPNLEMQNQIEVLYTENEHL-------TREIGILRDTIKELELRIET 55 (82)
Q Consensus 15 R~P~~E~q~q~e~l~~e~er~-------~rE~~lLr~T~eElE~Riet 55 (82)
-|-|.|+-.||+--+.||.-+ .-|+.-|..||.|||.-|=+
T Consensus 6 QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLa 53 (351)
T PF07058_consen 6 QNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILA 53 (351)
T ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999998644 45899999999999987743
No 123
>KOG2685|consensus
Probab=44.82 E-value=1.9e+02 Score=24.57 Aligned_cols=60 Identities=22% Similarity=0.284 Sum_probs=47.6
Q ss_pred HhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Q psy2820 13 RLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNK 77 (82)
Q Consensus 13 rmR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~K 77 (82)
|-+-||+|+=.-+- +.++..|++-|..|+--|+.+++.=+.+|..=+.+-.+|=.-|..|
T Consensus 332 Rt~RPnvELCrD~A-----Q~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~~k 391 (421)
T KOG2685|consen 332 RTYRPNVELCRDQA-----QYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIAIK 391 (421)
T ss_pred cccCCchHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56789999865432 4578999999999999999999998888888777776665555554
No 124
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=44.08 E-value=92 Score=20.49 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=16.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRI 53 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Ri 53 (82)
.+++++.+......+..++..|...+..++..+
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~ 36 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEELQASI 36 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444444433
No 125
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=43.82 E-value=2.4e+02 Score=25.19 Aligned_cols=45 Identities=27% Similarity=0.478 Sum_probs=20.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy2820 23 NQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESI 67 (82)
Q Consensus 23 ~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESI 67 (82)
...+.+.+....+..++..+...+.++..+++.-...+.+-.+++
T Consensus 730 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 774 (1163)
T COG1196 730 EELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL 774 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555544444444444444444444433333
No 126
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=43.73 E-value=75 Score=24.39 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy2820 30 TENEHLTREIGILRDTIKELELRIETQKQTLQARD 64 (82)
Q Consensus 30 ~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRD 64 (82)
.....+.....-|..+|..+|.+|..|+..|.+..
T Consensus 180 eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n 214 (259)
T PF08657_consen 180 EKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMN 214 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777888899999999999999999998764
No 127
>PRK12705 hypothetical protein; Provisional
Probab=43.63 E-value=2e+02 Score=24.28 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy2820 37 REIGILRDTIKELELRIETQKQTLQARDESIKKL 70 (82)
Q Consensus 37 rE~~lLr~T~eElE~RietQkQTL~aRDESIkKL 70 (82)
+|+.-.|..+...|.|+....++|..|.+.+.+.
T Consensus 70 ~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~ 103 (508)
T PRK12705 70 QEARREREELQREEERLVQKEEQLDARAEKLDNL 103 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 128
>KOG3313|consensus
Probab=43.52 E-value=44 Score=25.63 Aligned_cols=63 Identities=24% Similarity=0.315 Sum_probs=46.5
Q ss_pred HhcCCCHHHHHHHHHHhh--hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy2820 13 RLRGPNLEMQNQIEVLYT--ENEHLTREIGILRDT---IKELELRIETQKQTLQARDESIKKLLEMLQN 76 (82)
Q Consensus 13 rmR~P~~E~q~q~e~l~~--e~er~~rE~~lLr~T---~eElE~RietQkQTL~aRDESIkKLLEmLq~ 76 (82)
++--|.+.+-+.++..-+ +++.... +.-++.. -+.||.-+.+|+-.|.+|=+.|++-||+++.
T Consensus 12 ~rGIPeA~fiedV~s~~~qp~~~~~~~-l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~ 79 (187)
T KOG3313|consen 12 ARGIPEAKFIEDVESYISQPELESLEA-LKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQT 79 (187)
T ss_pred cCCCChhHHHHHHHHHHcCcccccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 344577777777777644 3444433 4444443 5789999999999999999999999999874
No 129
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=43.24 E-value=89 Score=20.12 Aligned_cols=36 Identities=36% Similarity=0.481 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIET 55 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Riet 55 (82)
.++.+.+.+..+.+.+..++.-++..+.|.+.-+++
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~ 38 (129)
T cd00584 3 QLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKET 38 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777777777777777776655544
No 130
>PHA02562 46 endonuclease subunit; Provisional
Probab=43.18 E-value=1.6e+02 Score=22.90 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELR 52 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~R 52 (82)
+.+++++.+.++.+.+..++.-+.+.+++++..
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~ 210 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKK 210 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455555555555555555555555555544443
No 131
>KOG3119|consensus
Probab=42.70 E-value=60 Score=24.55 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDTIKE 48 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eE 48 (82)
.|+++.+..|..||+.+..++.-|++.+.-
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~ 247 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELAT 247 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777776666666555443
No 132
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=42.56 E-value=89 Score=20.48 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=25.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 24 QIEVLYTENEHLTREIGILRDTIKELELRI 53 (82)
Q Consensus 24 q~e~l~~e~er~~rE~~lLr~T~eElE~Ri 53 (82)
=+..+++|-|-..-|.|-||+.+......+
T Consensus 9 lL~~lQnEWDa~mLE~f~LRk~l~~~rqEL 38 (70)
T PF08606_consen 9 LLSTLQNEWDALMLENFTLRKQLDQTRQEL 38 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999998766554
No 133
>PRK04863 mukB cell division protein MukB; Provisional
Probab=42.55 E-value=2.5e+02 Score=26.73 Aligned_cols=64 Identities=16% Similarity=0.266 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCCC
Q psy2820 18 NLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGL 81 (82)
Q Consensus 18 ~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~KG~~~ 81 (82)
|..+++.++.+..+.+....++.-.++.....+..+.+-+..+.+..+-.+.+-.-|+.-|++.
T Consensus 987 ~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~ 1050 (1486)
T PRK04863 987 NEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPA 1050 (1486)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4456666666666666666666667777777777766666777777777788888888888875
No 134
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=42.37 E-value=1.1e+02 Score=20.84 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=17.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELE 50 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE 50 (82)
|..++..|..+...+..++.-|+..+..+.
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555666655555555554
No 135
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=42.31 E-value=1.7e+02 Score=23.82 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQ 56 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQ 56 (82)
|+...++.+++|++.+.+|+.-|...+++...|++.=
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~l 175 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRL 175 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555554443
No 136
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=41.96 E-value=1.7e+02 Score=22.88 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=24.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2820 24 QIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEML 74 (82)
Q Consensus 24 q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmL 74 (82)
.+..++++...+..|+...++.+.+++.++.+=...+.+--+.+..+.+.+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555544444444444444444444443
No 137
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=41.79 E-value=59 Score=26.99 Aligned_cols=25 Identities=36% Similarity=0.348 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2820 38 EIGILRDTIKELELRIETQKQTLQA 62 (82)
Q Consensus 38 E~~lLr~T~eElE~RietQkQTL~a 62 (82)
.+-.|+.-|..||.+|+.+++.+.+
T Consensus 315 qV~~l~~rI~aLe~QIa~er~kl~~ 339 (434)
T PRK15178 315 LIPRLSAKIKVLEKQIGEQRNRLSN 339 (434)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455667788888888888888864
No 138
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=41.75 E-value=1e+02 Score=20.29 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=26.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQK 57 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQk 57 (82)
++.+.+.+..+.+.+...+.-|...+.++..-+++=+
T Consensus 11 l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 11 LAAQLQALQAQIEALQQQLEELQASINELDTAKETLE 47 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777788888777777777776665544
No 139
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=41.28 E-value=26 Score=22.83 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCC
Q psy2820 47 KELELRIETQKQTLQARDESIKKLLEMLQNKGVG 80 (82)
Q Consensus 47 eElE~RietQkQTL~aRDESIkKLLEmLq~KG~~ 80 (82)
.+++..|.++ -|...|-+-..+||.+|.++|-.
T Consensus 33 ~~d~EeI~~~-~t~~~r~~ka~~LLdiL~~rG~~ 65 (86)
T cd08785 33 EQDEEEVLSS-PRLPIRANRTGRLLDILATRGKR 65 (86)
T ss_pred HHHHHHHhCC-CccccHHHHHHHHHHHHHhcCcc
Confidence 3466667663 34444666678999999999964
No 140
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=41.01 E-value=25 Score=29.75 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 16 GPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIE 54 (82)
Q Consensus 16 ~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Rie 54 (82)
.|...+-++++.++ +.|.+.+|+.-|.+.+++|..|++
T Consensus 18 ~~~~a~~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~ 55 (489)
T PF11853_consen 18 LPAAAMADDIDLLQ-KIEALKKQLEELKAQQDDLNDRVD 55 (489)
T ss_pred cchhhhhhhhHHHH-HHHHHHHHHHHHHHhhcccccccc
Confidence 34444444555555 555555555555555555555554
No 141
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=40.90 E-value=1.3e+02 Score=21.51 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2820 47 KELELRIETQKQTLQARDESIKKLLEMLQ 75 (82)
Q Consensus 47 eElE~RietQkQTL~aRDESIkKLLEmLq 75 (82)
.++|...+..++.|.++=++...--.+|+
T Consensus 81 ~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 81 LELEDQWRQERKDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666555555554
No 142
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=40.86 E-value=1.2e+02 Score=25.23 Aligned_cols=61 Identities=23% Similarity=0.250 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCCC
Q psy2820 17 PNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGL 81 (82)
Q Consensus 17 P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~KG~~~ 81 (82)
+....++.++.. -++.+..|+.-+|+++++.-..+-.. .....++....|.+.|-+.|++.
T Consensus 152 ~~~~~~~~~~~~--~~~~l~~El~~lr~~l~~~~~~l~~~--~~~~~~p~~~~l~~~Ll~~dv~~ 212 (484)
T PRK06995 152 VADAVKARIERI--VNDTVMQELRSLRGMLEEQLASLAWG--ERQRRDPVRAALLKHLLAAGFSA 212 (484)
T ss_pred cchhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcc--ccccccHHHHHHHHHHHHCCCCH
Confidence 344556666644 56778889988888887544333211 11235777888889999988874
No 143
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=40.40 E-value=47 Score=20.80 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 31 ENEHLTREIGILRDTIKELELRI 53 (82)
Q Consensus 31 e~er~~rE~~lLr~T~eElE~Ri 53 (82)
..+.+.||+.-||+.+-||..|-
T Consensus 12 dreqlrrelnsLR~~vhelctRs 34 (48)
T PF10845_consen 12 DREQLRRELNSLRRSVHELCTRS 34 (48)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhc
Confidence 35678899999999999999885
No 144
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=40.16 E-value=1.4e+02 Score=23.91 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=34.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCCC
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGL 81 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~KG~~~ 81 (82)
++++++..-+ +.+..|+.-+|+.+++.-..+.. +....+++.-..+.+.|...|++.
T Consensus 34 ~~~~~~~~~~--~~~~~El~~lr~ll~~~~~~~~w--~~~~~~~p~~~~l~~~L~~~g~~~ 90 (374)
T PRK14722 34 VKARIERIVN--DTVMQELGSLRELMEEQFAGLMW--NERQRRNPVHGALTKYLFAAGFSA 90 (374)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhh--cchhccCcHHHHHHHHHHHCCCCH
Confidence 4455554333 56677888888877654332221 122346777788888888888863
No 145
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=40.10 E-value=99 Score=19.72 Aligned_cols=28 Identities=32% Similarity=0.286 Sum_probs=14.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTIKEL 49 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~eEl 49 (82)
.+.++.|-.-++++.+|+..||.-+..+
T Consensus 6 e~kle~Li~~~~~L~~EN~~Lr~q~~~~ 33 (65)
T TIGR02449 6 AAQVEHLLEYLERLKSENRLLRAQEKTW 33 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544443
No 146
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=39.48 E-value=79 Score=21.05 Aligned_cols=32 Identities=31% Similarity=0.308 Sum_probs=18.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELR 52 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~R 52 (82)
++.|+...++|++.+..+...|..-++.|+.-
T Consensus 55 l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 55 LQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45555566666666666655555555555443
No 147
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=39.45 E-value=2.6e+02 Score=24.38 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDTIKEL 49 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eEl 49 (82)
.|++..+..|..+.++|..++.-+++.++.+
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l 591 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSL 591 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888887777666655
No 148
>KOG4593|consensus
Probab=39.27 E-value=1.9e+02 Score=26.15 Aligned_cols=60 Identities=22% Similarity=0.330 Sum_probs=46.2
Q ss_pred cCCCHHH----HHHHHHHhhhHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2820 15 RGPNLEM----QNQIEVLYTENEHLTR---------------------------EIGILRDTIKELELRIETQKQTLQAR 63 (82)
Q Consensus 15 R~P~~E~----q~q~e~l~~e~er~~r---------------------------E~~lLr~T~eElE~RietQkQTL~aR 63 (82)
-||.+.. .+.++.|++|++++.. |++.|++-++.+|.|+..=|++..++
T Consensus 547 ~npt~~~~~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~~~s~~~~~~ev~qlk~ev~s~ekr~~rlk~vF~~k 626 (716)
T KOG4593|consen 547 TNPTSKARQIKKNRLEELQAELERLKERLTALEGDKMQFRDGEIAVHSLLAFSKEVAQLKKEVESAEKRNQRLKEVFASK 626 (716)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3676443 3567788888877654 89999999999999999999999988
Q ss_pred HHHHHHHHHHH
Q psy2820 64 DESIKKLLEML 74 (82)
Q Consensus 64 DESIkKLLEmL 74 (82)
-.-..+..-+|
T Consensus 627 i~eFr~ac~sL 637 (716)
T KOG4593|consen 627 IQEFRDACYSL 637 (716)
T ss_pred HHHHHHHHHhh
Confidence 76666554444
No 149
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=39.26 E-value=1.4e+02 Score=21.22 Aligned_cols=31 Identities=6% Similarity=0.099 Sum_probs=14.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 23 NQIEVLYTENEHLTREIGILRDTIKELELRI 53 (82)
Q Consensus 23 ~q~e~l~~e~er~~rE~~lLr~T~eElE~Ri 53 (82)
++...+.+..+...+.+...+.++......|
T Consensus 19 ~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL 49 (135)
T TIGR03495 19 QRLRNARADLERANRVLKAQQAELASKANQL 49 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3444455555555555544444444444443
No 150
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=38.72 E-value=1.3e+02 Score=20.87 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Q psy2820 43 RDTIKELELRIETQKQTLQARDESI 67 (82)
Q Consensus 43 r~T~eElE~RietQkQTL~aRDESI 67 (82)
...+.++..+|++.-..|.+.=||.
T Consensus 126 ~~ki~e~~~ki~~ei~~lr~~iE~~ 150 (177)
T PF07798_consen 126 ELKIQELNNKIDTEIANLRTEIESL 150 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555444444444443
No 151
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=38.66 E-value=1.1e+02 Score=19.68 Aligned_cols=32 Identities=31% Similarity=0.476 Sum_probs=16.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELR 52 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~R 52 (82)
++++.+.+..+.+.+...+.-|...+.+++.-
T Consensus 4 l~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~ 35 (126)
T TIGR00293 4 LAAELQILQQQVESLQAQIAALRALIAELETA 35 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555554433
No 152
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=38.66 E-value=84 Score=25.28 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=27.8
Q ss_pred hcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy2820 14 LRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELEL 51 (82)
Q Consensus 14 mR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~ 51 (82)
+++=|+--+.+|+.++.....+.||+.-|++.+++++.
T Consensus 280 L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 280 LKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45556666777888888887888888877777777664
No 153
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=38.37 E-value=38 Score=21.69 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCC
Q psy2820 48 ELELRIETQKQTLQARDESIKKLLEMLQNKGVG 80 (82)
Q Consensus 48 ElE~RietQkQTL~aRDESIkKLLEmLq~KG~~ 80 (82)
++...|+++ .+|-+-..+||.+|.++|-.
T Consensus 34 ~~~e~I~~~----~tr~~q~~~LLd~L~~RG~~ 62 (84)
T cd08326 34 DMIEEIQAA----GSRRDQARQLLIDLETRGKQ 62 (84)
T ss_pred HHHHHHHcC----CCHHHHHHHHHHHHHhcCHH
Confidence 344556653 36677789999999999953
No 154
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=38.10 E-value=1.6e+02 Score=21.53 Aligned_cols=66 Identities=15% Similarity=0.282 Sum_probs=38.0
Q ss_pred cCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCC
Q psy2820 15 RGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVG 80 (82)
Q Consensus 15 R~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~KG~~ 80 (82)
-+++.+|-+-+..-..|...+...+--+.++..+++.++-.--..|..-...+++|-.+...|+++
T Consensus 53 e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~ 118 (194)
T PF15619_consen 53 EDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLA 118 (194)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 345556666666666666555555555556666666666555555555555566665555555543
No 155
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=38.02 E-value=2.3e+02 Score=23.38 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=8.4
Q ss_pred HHHHHHHHHhhhHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREI 39 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~ 39 (82)
....+++.+.++...+..+.
T Consensus 206 ~~~~~~~~le~el~~l~~~~ 225 (650)
T TIGR03185 206 SILSEIEALEAELKEQSEKY 225 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333
No 156
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=37.68 E-value=1.5e+02 Score=26.34 Aligned_cols=69 Identities=26% Similarity=0.353 Sum_probs=51.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy2820 7 EEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQN 76 (82)
Q Consensus 7 eeelr~rmR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~ 76 (82)
+.+|+--+++-.+-. .|++..-+|.+.+.||+.-.--...+|-.-+-+|+-..+++-+|+-|++--+.|
T Consensus 353 ~d~L~~q~~kq~Is~-e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~s 421 (622)
T COG5185 353 IDELHKQLRKQGIST-EQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDS 421 (622)
T ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544432 367888889999999998888888888888888888888999999888766543
No 157
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=37.68 E-value=1.7e+02 Score=21.80 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=28.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 26 EVLYTENEHLTREIGILRDTIKELELRIETQKQ 58 (82)
Q Consensus 26 e~l~~e~er~~rE~~lLr~T~eElE~RietQkQ 58 (82)
-.|+...+.+..||.-||-.+|++...|+.-++
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 367889999999999999999999999987444
No 158
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=37.55 E-value=1.4e+02 Score=20.91 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCC
Q psy2820 41 ILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVG 80 (82)
Q Consensus 41 lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~KG~~ 80 (82)
-|...++|-....+.+.+....|.+.|.++.+++..-|+.
T Consensus 32 kl~~vv~er~~~~~~~~~~~~er~~~l~~i~~~~~~~Git 71 (134)
T PRK10328 32 KFRVVTKERREEEEQQQRELAERQEKINTWLELMKADGIN 71 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4555566666666677777888999999999999988875
No 159
>PRK00846 hypothetical protein; Provisional
Probab=37.28 E-value=98 Score=20.23 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDTIKELELRI 53 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Ri 53 (82)
.+|.+.++.|..-.-++..=|.-|.+++-+....|
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I 43 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTG 43 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666554444444444444444433333
No 160
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=36.13 E-value=2.1e+02 Score=22.66 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=43.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCC
Q psy2820 24 QIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVG 80 (82)
Q Consensus 24 q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~KG~~ 80 (82)
-|++|----..-..++.-|-.-.++++..|+.=+++...+-+-|+-.+..|...|++
T Consensus 206 ameTlDPnAk~y~~~~~dl~~~~~ev~~~I~~l~~~~~~~~~~f~pte~~ll~agv~ 262 (289)
T PF05149_consen 206 AMETLDPNAKKYSKEKKDLLEQREEVEQEINLLRDKQAKALEDFEPTEQLLLAAGVE 262 (289)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHcCCC
Confidence 355555555556666677777778888888888888888888888888888888875
No 161
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=36.07 E-value=38 Score=15.51 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=15.2
Q ss_pred HHhhHHHHHHHHHHHhhcCCC
Q psy2820 60 LQARDESIKKLLEMLQNKGVG 80 (82)
Q Consensus 60 L~aRDESIkKLLEmLq~KG~~ 80 (82)
|...+++|+.-++.|++.|++
T Consensus 11 l~~~~~~l~~~~~~l~~~g~~ 31 (31)
T smart00733 11 LGYSEKKLKPKVEFLKELGFS 31 (31)
T ss_pred ccccHHHhhHHHHHHHHcCCC
Confidence 334478888888888877763
No 162
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=35.55 E-value=86 Score=23.81 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=10.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy2820 24 QIEVLYTENEHLTREIGILRDTIKELE 50 (82)
Q Consensus 24 q~e~l~~e~er~~rE~~lLr~T~eElE 50 (82)
|=|+...-|..+..|+.-+..++..+.
T Consensus 87 QRDRFR~Rn~ELE~elr~~~~~~~~L~ 113 (248)
T PF08172_consen 87 QRDRFRQRNAELEEELRKQQQTISSLR 113 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 163
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=35.30 E-value=39 Score=21.72 Aligned_cols=14 Identities=21% Similarity=0.650 Sum_probs=8.2
Q ss_pred HHHHHHHHHhhcCC
Q psy2820 66 SIKKLLEMLQNKGV 79 (82)
Q Consensus 66 SIkKLLEmLq~KG~ 79 (82)
.|+.++..|.+-|+
T Consensus 72 ~lr~i~~sLa~MGI 85 (85)
T PF14357_consen 72 ILRNIMDSLANMGI 85 (85)
T ss_pred HHHHHHHHHHHCCC
Confidence 35566666666554
No 164
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=35.10 E-value=2.1e+02 Score=24.92 Aligned_cols=32 Identities=31% Similarity=0.294 Sum_probs=16.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 27 VLYTENEHLTREIGILRDTIKELELRIETQKQ 58 (82)
Q Consensus 27 ~l~~e~er~~rE~~lLr~T~eElE~RietQkQ 58 (82)
.|.+|.+++..||.-+++-|+.+|..+.+|..
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~ 114 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEA 114 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555543
No 165
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=35.01 E-value=1.2e+02 Score=24.27 Aligned_cols=48 Identities=15% Similarity=0.267 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCCC
Q psy2820 30 TENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGL 81 (82)
Q Consensus 30 ~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~KG~~~ 81 (82)
.+.+.+.+|+.-+++.++++=... +.....++....+.+.|...|++.
T Consensus 130 ~~~~~l~~el~~lk~~l~~~~~~~----~~~~~~~~~~~~~~~~L~~~gv~~ 177 (424)
T PRK05703 130 KELDELRDELKELKNLLEDQLSGL----RQVERIPPEFAELYKRLKRSGLSP 177 (424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh----cccccchHHHHHHHHHHHHCCCCH
Confidence 345667777777777776543332 223556778888999999988863
No 166
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=34.23 E-value=89 Score=21.10 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=16.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIK 47 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~e 47 (82)
.+.+++.|..++..+.+|+.-|+..++
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666655443
No 167
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=34.04 E-value=2e+02 Score=23.69 Aligned_cols=55 Identities=11% Similarity=0.299 Sum_probs=25.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhHHHHHHHHHHHhh
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIE------TQKQTLQARDESIKKLLEMLQN 76 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Rie------tQkQTL~aRDESIkKLLEmLq~ 76 (82)
+.++++.+.....+... +.-|+.-+++++..++ .-++.+.+=++.++.+...+..
T Consensus 327 Le~Ei~~~~~~~~~~~~-l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (448)
T PF05761_consen 327 LEQEIEIWNSKKYRFEE-LQELEELLEELQDHLDQLRSSSELRPDISELRKERRELRREMKE 387 (448)
T ss_dssp HHHHHHHHHHTHHHHHH-HHHHHHHCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhhhcchhhhH-HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHhh
Confidence 33444443333333322 4444444444444433 3344455555666666665543
No 168
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=33.20 E-value=1.3e+02 Score=19.09 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=10.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRD 44 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~ 44 (82)
..+++.|..||=.+.=.|..|.+
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee 28 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEE 28 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Confidence 34455555555444444444433
No 169
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=32.98 E-value=3e+02 Score=23.26 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=17.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 24 QIEVLYTENEHLTREIGILRDTIKELELRIETQKQTL 60 (82)
Q Consensus 24 q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL 60 (82)
+.+.+..+...+..++.-+...+.+++.+++..++..
T Consensus 61 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~ 97 (475)
T PRK10361 61 ECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHA 97 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444445555555555444433
No 170
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=32.83 E-value=1.3e+02 Score=19.04 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDTIKELELRIE 54 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Rie 54 (82)
.+++.+-..|..+++-+..|+.-|+..-.....||.
T Consensus 28 eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 28 EELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555555554
No 171
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.72 E-value=73 Score=21.07 Aligned_cols=15 Identities=53% Similarity=0.736 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy2820 46 IKELELRIETQKQTL 60 (82)
Q Consensus 46 ~eElE~RietQkQTL 60 (82)
|.+||.|+--|-+|+
T Consensus 10 i~eLE~r~AfQE~ti 24 (72)
T COG2900 10 IIELEIRLAFQEQTI 24 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 172
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=32.67 E-value=42 Score=28.45 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELE 50 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE 50 (82)
.++||+|.|..|.+.+.+++.-+.+.+.+.|
T Consensus 28 ~~~qkie~L~kql~~Lk~q~~~l~~~v~k~e 58 (489)
T PF11853_consen 28 DLLQKIEALKKQLEELKAQQDDLNDRVDKVE 58 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 3444555555555555555555444444444
No 173
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=32.66 E-value=1.3e+02 Score=19.07 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=35.0
Q ss_pred HHHHHHhhhHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2820 23 NQIEVLYTENEHLTREIGIL---------------RDTIKELELRIETQKQTLQARDESIKKLLEMLQ 75 (82)
Q Consensus 23 ~q~e~l~~e~er~~rE~~lL---------------r~T~eElE~RietQkQTL~aRDESIkKLLEmLq 75 (82)
++++.-.+||+....|+..| ..+..+....++.....+.++=.++.+=++-++
T Consensus 23 ~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~ 90 (105)
T cd00632 23 QKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQ 90 (105)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667788888887554 456677777777777777777655555444443
No 174
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=32.44 E-value=3e+02 Score=23.10 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=5.8
Q ss_pred HHHhhhHHHHHHHHH
Q psy2820 26 EVLYTENEHLTREIG 40 (82)
Q Consensus 26 e~l~~e~er~~rE~~ 40 (82)
+..+.|.+.+.+++.
T Consensus 41 ~q~q~ei~~~~~~i~ 55 (420)
T COG4942 41 KQIQKEIAALEKKIR 55 (420)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 175
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=32.03 E-value=1.2e+02 Score=18.29 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 29 YTENEHLTREIGILRDTIKELELRIETQ 56 (82)
Q Consensus 29 ~~e~er~~rE~~lLr~T~eElE~RietQ 56 (82)
....+.+..++.-|.+.++.++.+++.-
T Consensus 68 ~~~~~~~~~~i~~l~~~~~~l~~~l~~~ 95 (106)
T PF01920_consen 68 EERIEKLEKEIKKLEKQLKYLEKKLKEL 95 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433
No 176
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=32.02 E-value=1.3e+02 Score=18.80 Aligned_cols=55 Identities=33% Similarity=0.549 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDT---IKELELRIETQKQTLQARDESIKKLLEML 74 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T---~eElE~RietQkQTL~aRDESIkKLLEmL 74 (82)
+++++++.|+++....++++.-+.+. .+++-.+...=+..+.+-++.++.+-+-+
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666555542 34444444444444444444444443333
No 177
>PF14645 Chibby: Chibby family
Probab=31.50 E-value=1.7e+02 Score=19.92 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQ 58 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQ 58 (82)
-++++..+|..||.-+.-++.||=+-+-|-..+......
T Consensus 75 ~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek 113 (116)
T PF14645_consen 75 RLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEK 113 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888877776655544443
No 178
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=31.35 E-value=2e+02 Score=20.59 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=23.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTIKELELRIETQ 56 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQ 56 (82)
++.++.|-++...+..++..|+..+..++..|.+=
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~ 39 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISEL 39 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777776666655443
No 179
>PRK14127 cell division protein GpsB; Provisional
Probab=31.28 E-value=1.8e+02 Score=20.01 Aligned_cols=49 Identities=16% Similarity=0.330 Sum_probs=39.2
Q ss_pred HHhcCCCH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 12 MRLRGPNL-EMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTL 60 (82)
Q Consensus 12 ~rmR~P~~-E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL 60 (82)
-.+||=|. |+..=++.+-.+.+.+.+|+.-|++.+..++.+++.-...+
T Consensus 18 ~~~RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 18 TSMRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566654 57777888889999999999999999999999997655433
No 180
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=31.12 E-value=2.9e+02 Score=24.63 Aligned_cols=56 Identities=25% Similarity=0.436 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy2820 16 GPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLL 71 (82)
Q Consensus 16 ~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLL 71 (82)
+-+.++++.++.|+...-+...+..+|..-++.|-.+++.=...+.-...+|-++=
T Consensus 315 ~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~q 370 (775)
T PF10174_consen 315 EQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQ 370 (775)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888877777777777777777777777766666666665555543
No 181
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=31.08 E-value=3.2e+02 Score=24.32 Aligned_cols=53 Identities=25% Similarity=0.351 Sum_probs=44.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy2820 24 QIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQN 76 (82)
Q Consensus 24 q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~ 76 (82)
+|..|........+|-.-|-.++++.+..++.-+..|....+-|-.|.+-|..
T Consensus 266 EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~a 318 (717)
T PF09730_consen 266 EIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDA 318 (717)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666778888999999999999999999999999999999887654
No 182
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=31.03 E-value=2.4e+02 Score=21.50 Aligned_cols=38 Identities=34% Similarity=0.319 Sum_probs=30.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTIKEL-ELRIETQKQT 59 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~eEl-E~RietQkQT 59 (82)
-..|+.|+.||..+..|...+.+-.++| .....-|+|-
T Consensus 101 ~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 101 VAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 3568899999999999999999999998 5555556664
No 183
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=30.95 E-value=2.4e+02 Score=21.53 Aligned_cols=12 Identities=33% Similarity=0.368 Sum_probs=4.9
Q ss_pred hHHHHHHHHHHH
Q psy2820 63 RDESIKKLLEML 74 (82)
Q Consensus 63 RDESIkKLLEmL 74 (82)
|=+...+|+.-|
T Consensus 278 kl~rA~~Li~~L 289 (344)
T PF12777_consen 278 KLERAEKLISGL 289 (344)
T ss_dssp HHHHHHHHHHCC
T ss_pred hhccHHHHHhhh
Confidence 333444444433
No 184
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=30.92 E-value=1.5e+02 Score=18.95 Aligned_cols=47 Identities=26% Similarity=0.308 Sum_probs=39.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 9 ELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIET 55 (82)
Q Consensus 9 elr~rmR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Riet 55 (82)
.||-=||.-|..|.++.+.|.+=.+.+..|...+...++|--..|++
T Consensus 17 ~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~lv~~ 63 (68)
T PF11577_consen 17 DLKEALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQEARELVER 63 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777889999999999999999999999999988888876555543
No 185
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=30.85 E-value=2.3e+02 Score=21.11 Aligned_cols=39 Identities=26% Similarity=0.291 Sum_probs=21.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 23 NQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQ 61 (82)
Q Consensus 23 ~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~ 61 (82)
.+++...+.++...+|...+.+..++.+..+++++..+.
T Consensus 204 k~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~e 242 (297)
T PF02841_consen 204 KEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYE 242 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555566666666666666655555555444
No 186
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=30.85 E-value=1.7e+02 Score=21.09 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 18 NLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIET 55 (82)
Q Consensus 18 ~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Riet 55 (82)
..||.+.+++...-.+.|+.-||+..+..+-||...|+
T Consensus 80 ~~emkkdleaankrve~q~ekiflmekkfe~lekkyes 117 (122)
T PF05325_consen 80 TIEMKKDLEAANKRVESQAEKIFLMEKKFETLEKKYES 117 (122)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 36788888888888888888899988888877766554
No 187
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=30.69 E-value=68 Score=26.70 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy2820 32 NEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKL 70 (82)
Q Consensus 32 ~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKL 70 (82)
+|++++|+--||+.-++- -|+|.++|+.|+-|
T Consensus 292 YD~LQKEVi~LRKac~eK-------dqsLkdKDdaIeML 323 (351)
T PF07058_consen 292 YDMLQKEVINLRKACHEK-------DQSLKDKDDAIEML 323 (351)
T ss_pred HHHHHHHHHHHHHHHhhh-------ccchhhhHHHHHHH
Confidence 589999999999998764 48999999998644
No 188
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=30.45 E-value=52 Score=19.27 Aligned_cols=19 Identities=37% Similarity=0.718 Sum_probs=15.2
Q ss_pred HhhHHHHHHHHHHHhhcCC
Q psy2820 61 QARDESIKKLLEMLQNKGV 79 (82)
Q Consensus 61 ~aRDESIkKLLEmLq~KG~ 79 (82)
.++-+-+.+||++|.+||-
T Consensus 43 ~t~~~k~~~LLd~l~~kg~ 61 (85)
T PF00619_consen 43 PTRQDKARKLLDILKRKGP 61 (85)
T ss_dssp SSHHHHHHHHHHHHHHCCH
T ss_pred CChHHHHHHHHHHHHHHCH
Confidence 3456668999999999984
No 189
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=30.20 E-value=1.3e+02 Score=18.02 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 29 YTENEHLTREIGILRDTIKELELRI 53 (82)
Q Consensus 29 ~~e~er~~rE~~lLr~T~eElE~Ri 53 (82)
.+|..|+.+++.-+.+.+.-++.++
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666665555554
No 190
>KOG4343|consensus
Probab=30.02 E-value=89 Score=27.90 Aligned_cols=32 Identities=28% Similarity=0.501 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELEL 51 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~ 51 (82)
-|...+.+|.+|||.+.+|..-||+-|.+++.
T Consensus 306 ~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 306 GLEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 35556788999999999999999999999886
No 191
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=29.84 E-value=1.1e+02 Score=22.02 Aligned_cols=33 Identities=30% Similarity=0.535 Sum_probs=29.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTIKELELRIE 54 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~eElE~Rie 54 (82)
.|-++.+++-|.++...-..|.++|.-+|.|+-
T Consensus 34 aqrleel~~knqqLreQqk~L~e~i~~LE~RLR 66 (120)
T PF10482_consen 34 AQRLEELFSKNQQLREQQKTLHENIKVLENRLR 66 (120)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999998888888999999999999875
No 192
>PRK02224 chromosome segregation protein; Provisional
Probab=29.31 E-value=3.4e+02 Score=22.66 Aligned_cols=46 Identities=17% Similarity=0.325 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDE 65 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDE 65 (82)
+++.+++.+..+...+..++.-+.+.+.+.+.++++....+.....
T Consensus 346 ~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~ 391 (880)
T PRK02224 346 SLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEE 391 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555444443333
No 193
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=29.15 E-value=1.9e+02 Score=19.79 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQT 59 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQT 59 (82)
.||+..+-.|+.|...+..=..-|-+-|+-||.-+-..+..
T Consensus 28 aEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k 68 (134)
T PF08232_consen 28 AEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAK 68 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777777766655556666667777655544443
No 194
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=29.13 E-value=53 Score=21.00 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCCC
Q psy2820 48 ELELRIETQKQTLQARDESIKKLLEMLQNKGVGL 81 (82)
Q Consensus 48 ElE~RietQkQTL~aRDESIkKLLEmLq~KG~~~ 81 (82)
++...|+++. +|-+-..+||.+|-++|..+
T Consensus 38 ~~~~~I~~~~----t~~~k~~~Lld~L~~RG~~A 67 (90)
T cd08332 38 SMAESIMAKP----TSFSQNVALLNLLPKRGPRA 67 (90)
T ss_pred HHHHHHHcCC----CcHHHHHHHHHHHHHhChhH
Confidence 4555666643 56677889999999999643
No 195
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=28.59 E-value=1.5e+02 Score=18.24 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGI 41 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~l 41 (82)
.+.||+++|+....++..-++.
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777776666665544443
No 196
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=28.38 E-value=34 Score=21.67 Aligned_cols=36 Identities=33% Similarity=0.496 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIET 55 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Riet 55 (82)
|+-.-++.+-.+.+.+.+|+.-|+..+++++.++..
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~ 57 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLEE 57 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 455566666666677777776666666666655543
No 197
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=28.05 E-value=1.2e+02 Score=25.53 Aligned_cols=14 Identities=50% Similarity=0.539 Sum_probs=9.8
Q ss_pred HHHHHHhhHHHHHH
Q psy2820 56 QKQTLQARDESIKK 69 (82)
Q Consensus 56 QkQTL~aRDESIkK 69 (82)
|-++|.||-+||+|
T Consensus 252 qi~~LkarieSlrk 265 (372)
T COG3524 252 QIPGLKARIESLRK 265 (372)
T ss_pred cchhHHHHHHHHHH
Confidence 45667777777776
No 198
>KOG4005|consensus
Probab=27.89 E-value=1.7e+02 Score=23.86 Aligned_cols=27 Identities=41% Similarity=0.389 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDT 45 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T 45 (82)
.||.++|..|-.||+++..|...||..
T Consensus 93 ~eme~~i~dL~een~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 93 EEMEYEIKDLTEENEILQNENDSLRAI 119 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666766666666666666666654
No 199
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=27.68 E-value=1.5e+02 Score=22.26 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=12.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTI 46 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~ 46 (82)
++.|+..++.|++.+.+|+.-+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (364)
T TIGR01242 11 LEDEKRSLEKEKIRLERELERLRSEI 36 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555544444444
No 200
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=27.64 E-value=1.5e+02 Score=18.18 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy2820 17 PNLEMQNQIEVLYTENEHLTREIGILRD 44 (82)
Q Consensus 17 P~~E~q~q~e~l~~e~er~~rE~~lLr~ 44 (82)
.+-+....+..|.+||..+..++..++.
T Consensus 23 d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 23 DRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456778899999999999999887764
No 201
>PF02173 pKID: pKID domain; InterPro: IPR003102 The nuclear factor CREB activates transcription of target genes in part through direct interactions with the KIX domain of the coactivator CBP in a phosphorylation-dependent manner. CBP and P300 bind to the pKID (phosphorylated kinase-inducible-domain) domain of CREB [].; GO: 0005515 protein binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1KDX_B.
Probab=27.53 E-value=71 Score=19.27 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=19.8
Q ss_pred HHHHH-HHHHhhHHHHHHHHHHHhhcC
Q psy2820 53 IETQK-QTLQARDESIKKLLEMLQNKG 78 (82)
Q Consensus 53 ietQk-QTL~aRDESIkKLLEmLq~KG 78 (82)
.++|| ..+.+|-+|-+|+|.-|-+-+
T Consensus 7 ~~~~krReiLsRRPSYRKIlndLs~~~ 33 (41)
T PF02173_consen 7 EDSQKRREILSRRPSYRKILNDLSSED 33 (41)
T ss_dssp -HHHHHHHHHTTSTHHHHHHHHHHHH-
T ss_pred cchHHHHHHHhhCchHHHHHHHhcccc
Confidence 34555 678999999999999996643
No 202
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=27.50 E-value=1.8e+02 Score=25.31 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDTI 46 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~ 46 (82)
-+++++|+.|.+|..++..+|.....-+
T Consensus 82 ~~L~~everLraei~~l~~~I~~~e~e~ 109 (632)
T PF14817_consen 82 RELEKEVERLRAEIQELDKEIESREREV 109 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788888888888877765444333
No 203
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=27.30 E-value=1.7e+02 Score=20.82 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=15.0
Q ss_pred HhhHHHHHHHHHHHhhcCCCC
Q psy2820 61 QARDESIKKLLEMLQNKGVGL 81 (82)
Q Consensus 61 ~aRDESIkKLLEmLq~KG~~~ 81 (82)
...|+.++.+.+.+++||++.
T Consensus 76 ~~pe~e~~el~~iy~~~Gl~~ 96 (213)
T PF01988_consen 76 NNPEEEKEELVEIYRAKGLSE 96 (213)
T ss_pred hChHhHHHHHHHHHHHCCCCH
Confidence 456667777778888888763
No 204
>COG1838 FumA Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [Energy production and conversion]
Probab=27.06 E-value=33 Score=25.98 Aligned_cols=17 Identities=47% Similarity=0.737 Sum_probs=15.1
Q ss_pred HHhhHHHHHHHHHHHhh
Q psy2820 60 LQARDESIKKLLEMLQN 76 (82)
Q Consensus 60 L~aRDESIkKLLEmLq~ 76 (82)
+.+||.+-+|++||+.+
T Consensus 29 ~t~RD~AH~ri~e~~~~ 45 (184)
T COG1838 29 VTGRDAAHKRLLEMLDR 45 (184)
T ss_pred EEehhHHHHHHHHHHhc
Confidence 46899999999999975
No 205
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=26.71 E-value=4.2e+02 Score=23.07 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2820 40 GILRDTIKELELRIETQKQT 59 (82)
Q Consensus 40 ~lLr~T~eElE~RietQkQT 59 (82)
.-++..++++..+++.+.+.
T Consensus 535 ~~~~~e~~~~~~~l~~~~~~ 554 (771)
T TIGR01069 535 EKLLKEQEKLKKELEQEMEE 554 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 206
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=26.59 E-value=3.4e+02 Score=21.83 Aligned_cols=55 Identities=20% Similarity=0.363 Sum_probs=45.6
Q ss_pred cCCCHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy2820 15 RGPNLEMQNQI-EVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKK 69 (82)
Q Consensus 15 R~P~~E~q~q~-e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkK 69 (82)
+.-+.++.+.+ ..|...|..+...+..+-..+..---.|.--++-|..||+=++-
T Consensus 74 kerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ 129 (306)
T PF04849_consen 74 KERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQI 129 (306)
T ss_pred HhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56678888888 78888888888888888888888888888889999999986654
No 207
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=26.58 E-value=1.9e+02 Score=18.93 Aligned_cols=53 Identities=25% Similarity=0.373 Sum_probs=33.7
Q ss_pred HHHHHHHhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC
Q psy2820 22 QNQIEVLYTENEHL--TREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKG 78 (82)
Q Consensus 22 q~q~e~l~~e~er~--~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~KG 78 (82)
...+..+.++.+++ ..++.-|+-.|.+|+-++. ++.++=.+|..+++.|..+-
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~----~l~~~l~~v~~~~~lLlE~~ 102 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELK----ELSARLQGVSHQLDLLLENE 102 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666 6666666666666665554 56666677888887776553
No 208
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=26.50 E-value=4.7e+02 Score=23.40 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=11.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 27 VLYTENEHLTREIGILRDTIKELELRIET 55 (82)
Q Consensus 27 ~l~~e~er~~rE~~lLr~T~eElE~Riet 55 (82)
.+.++......++.-++.++..++.++++
T Consensus 387 ~~~~~~~~~~~~l~~l~~~i~~l~~~~~~ 415 (1163)
T COG1196 387 ELEAELAEIRNELEELKREIESLEERLER 415 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444443333
No 209
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=26.48 E-value=2.3e+02 Score=19.84 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHH
Q psy2820 21 MQNQIEVLYTENEHL 35 (82)
Q Consensus 21 ~q~q~e~l~~e~er~ 35 (82)
+++++-.+-.+...+
T Consensus 93 l~~~L~~~~~~l~~l 107 (194)
T PF08614_consen 93 LAQQLVELNDELQEL 107 (194)
T ss_dssp ---------------
T ss_pred ccccccccccccchh
Confidence 344443333333333
No 210
>PRK11013 DNA-binding transcriptional regulator LysR; Provisional
Probab=26.26 E-value=1.6e+02 Score=20.77 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHh--cCC-CHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy2820 3 VRQLEEELRMRL--RGP-NLEMQNQIEVLYTENEHLTREIGILRDTIKELE 50 (82)
Q Consensus 3 vrqleeelr~rm--R~P-~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE 50 (82)
+++||++|-..+ |++ .+.+...=+.++..-.+...++.-+.+.++++.
T Consensus 39 Ik~LE~~lg~~Lf~R~~~~v~LT~~G~~l~~~a~~~l~~~~~~~~~~~~~~ 89 (309)
T PRK11013 39 LARFEKVIGLKLFERVRGRLHPTVQGLRLFEEVQRSYYGLDRIVSAAESLR 89 (309)
T ss_pred HHHHHHHhCceeeeecCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999998776 444 577777777777766666555555555444443
No 211
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=26.11 E-value=4.3e+02 Score=22.79 Aligned_cols=31 Identities=26% Similarity=0.436 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELE 50 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE 50 (82)
+|..++..|..|.++....+.-|..-|.+|.
T Consensus 33 qmseev~~L~eEk~~~~~~V~eLE~sL~eLk 63 (617)
T PF15070_consen 33 QMSEEVRTLKEEKEHDISRVQELERSLSELK 63 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444433
No 212
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=26.10 E-value=4.2e+02 Score=22.72 Aligned_cols=47 Identities=30% Similarity=0.398 Sum_probs=37.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHH
Q psy2820 24 QIEVLYTENEHLTREIGILRDTIKELELRIE-----TQKQTLQARDESIKKL 70 (82)
Q Consensus 24 q~e~l~~e~er~~rE~~lLr~T~eElE~Rie-----tQkQTL~aRDESIkKL 70 (82)
.++.|+.|.......+-+-|.-+++-|...| .+|+++.+|..-++-+
T Consensus 3 ~~~elq~e~~~~E~qL~~a~qkl~da~~~~e~dpD~~nk~~~~~R~~~v~~~ 54 (428)
T PF00846_consen 3 TLEELQEEITQHEQQLVIARQKLKDAEKQYEKDPDDVNKSTLQQRQSVVSAL 54 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888887764 6899999998776543
No 213
>KOG1003|consensus
Probab=25.98 E-value=2.7e+02 Score=21.67 Aligned_cols=52 Identities=31% Similarity=0.365 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 3 VRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIET 55 (82)
Q Consensus 3 vrqleeelr~rmR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Riet 55 (82)
+.+|+|++|.- .+-+--+...-+.+....|..-.++-.+.+-++|-|+|-+.
T Consensus 111 ~~eLeEe~~~~-~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~ 162 (205)
T KOG1003|consen 111 SEELEEDLRIL-DSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEF 162 (205)
T ss_pred HHHHHHHHHHh-HhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 47899999863 33333444555555555666677777777888887777553
No 214
>KOG2391|consensus
Probab=25.93 E-value=4e+02 Score=22.38 Aligned_cols=52 Identities=29% Similarity=0.356 Sum_probs=36.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHhhc
Q psy2820 26 EVLYTENEHLTREIGILRDTIKELE---LRIETQKQTLQARDESIKKLLEMLQNK 77 (82)
Q Consensus 26 e~l~~e~er~~rE~~lLr~T~eElE---~RietQkQTL~aRDESIkKLLEmLq~K 77 (82)
.+...|-+++..|.+-|+.|=+|+- ..++.=++||.-+--|+++=.+.|-+|
T Consensus 221 ~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k 275 (365)
T KOG2391|consen 221 RRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSK 275 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4566778888888887777766552 345555677777777888877777665
No 215
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=25.92 E-value=1.5e+02 Score=18.66 Aligned_cols=54 Identities=30% Similarity=0.361 Sum_probs=32.3
Q ss_pred HHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Q psy2820 23 NQIEVLYTENEH---LTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNK 77 (82)
Q Consensus 23 ~q~e~l~~e~er---~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~K 77 (82)
+++..+.++... ....+.-+++.+++++.+++.-+..|-+. ..+-.+|.-|...
T Consensus 6 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~lP~~-~~~~~ll~~l~~~ 62 (144)
T PF04350_consen 6 AQIQQLQQELAQLKEKVANLEELKKQLEQLEQQLEELLKKLPAE-EEIPSLLEDLNRL 62 (144)
T ss_dssp ------HHHHHHTGGG-SSHHHHHHHHHHHHHHHHHHHHCTTGG-GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHH
Confidence 344444444433 33345677788888888888888888775 4577777776654
No 216
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=25.89 E-value=83 Score=16.84 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2820 38 EIGILRDTIKELELRIE 54 (82)
Q Consensus 38 E~~lLr~T~eElE~Rie 54 (82)
|+.-+|.-|.+||.+++
T Consensus 2 E~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLS 18 (23)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 55666777777776654
No 217
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=25.83 E-value=4e+02 Score=22.39 Aligned_cols=58 Identities=24% Similarity=0.338 Sum_probs=25.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHhhcC
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTL-------QARDESIKKLLEMLQNKG 78 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL-------~aRDESIkKLLEmLq~KG 78 (82)
++.++..+..++..+..++.-.-.++++++.+|+..-..| .+|-...-++|..++--|
T Consensus 64 L~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g 128 (420)
T COG4942 64 LEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSG 128 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444444444444444333344444443333222222 244445555566655544
No 218
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=25.80 E-value=71 Score=18.56 Aligned_cols=18 Identities=39% Similarity=0.698 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHhhcCCC
Q psy2820 63 RDESIKKLLEMLQNKGVG 80 (82)
Q Consensus 63 RDESIkKLLEmLq~KG~~ 80 (82)
+-+-..+||.+|.+||-.
T Consensus 42 ~~~k~~~Lld~l~~kg~~ 59 (80)
T cd01671 42 RQDKARKLLDILPRKGPK 59 (80)
T ss_pred hHHHHHHHHHHHHhcChH
Confidence 555677899999999853
No 219
>PRK00736 hypothetical protein; Provisional
Probab=25.78 E-value=1.7e+02 Score=18.07 Aligned_cols=13 Identities=38% Similarity=0.486 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q psy2820 44 DTIKELELRIETQ 56 (82)
Q Consensus 44 ~T~eElE~RietQ 56 (82)
+||++|-.-|-.|
T Consensus 19 ~tie~Ln~~v~~Q 31 (68)
T PRK00736 19 KTIEELSDQLAEQ 31 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 220
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=25.76 E-value=2.4e+02 Score=22.07 Aligned_cols=42 Identities=31% Similarity=0.326 Sum_probs=25.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy2820 9 ELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELEL 51 (82)
Q Consensus 9 elr~rmR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~ 51 (82)
-++.++ .-|.-|+.+|+.-..+.+.+..||..|+.-++.|..
T Consensus 180 ~l~~~~-~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 180 ALLQRT-LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 345666666666666666666666666666666544
No 221
>KOG0964|consensus
Probab=25.53 E-value=3.9e+02 Score=25.73 Aligned_cols=70 Identities=29% Similarity=0.426 Sum_probs=56.0
Q ss_pred HHHHHhc---CCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--------HHHHHHHHHHhhc
Q psy2820 9 ELRMRLR---GPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARD--------ESIKKLLEMLQNK 77 (82)
Q Consensus 9 elr~rmR---~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRD--------ESIkKLLEmLq~K 77 (82)
|.+-||- .-+.++.+..+.++....++.||=.-||..+.-++.-++.+.+.|.+=- .||++..+-+.--
T Consensus 443 e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~n 522 (1200)
T KOG0964|consen 443 ETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVANGIDSVRKIKEELKPN 522 (1200)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhccc
Confidence 4445552 3467888999999999999999999999999999999999988887532 4788888877643
Q ss_pred C
Q psy2820 78 G 78 (82)
Q Consensus 78 G 78 (82)
|
T Consensus 523 g 523 (1200)
T KOG0964|consen 523 G 523 (1200)
T ss_pred c
Confidence 3
No 222
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=24.83 E-value=3.8e+02 Score=21.71 Aligned_cols=57 Identities=28% Similarity=0.418 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHhhHHHHHHHHHHHhhc
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELEL------------RIETQKQTLQARDESIKKLLEMLQNK 77 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~------------RietQkQTL~aRDESIkKLLEmLq~K 77 (82)
.+-|++.+..-.+.+..++..+..++++++. .++.+-..|..|-+-+...++.|...
T Consensus 161 ~~vQ~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~ 229 (475)
T PF10359_consen 161 RRVQIELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDS 229 (475)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445666666666666666677777666553 22233344555555566666555443
No 223
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=24.65 E-value=99 Score=20.66 Aligned_cols=18 Identities=44% Similarity=0.735 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy2820 30 TENEHLTREIGILRDTIK 47 (82)
Q Consensus 30 ~e~er~~rE~~lLr~T~e 47 (82)
.|+..+..||.+||+-++
T Consensus 24 ~e~~~L~eEI~~Lr~qve 41 (86)
T PF12711_consen 24 EENEALKEEIQLLREQVE 41 (86)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666666665443
No 224
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=24.64 E-value=3.5e+02 Score=21.31 Aligned_cols=49 Identities=22% Similarity=0.356 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIK 68 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIk 68 (82)
+++..+-.++.|+....+|+..+..+...+...++.=+.+|..||+-|.
T Consensus 123 e~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~ 171 (302)
T PF09738_consen 123 ELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIE 171 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666777777777777777777777777777776664
No 225
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=24.34 E-value=4.1e+02 Score=21.96 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=14.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 25 IEVLYTENEHLTREIGILRDTIKELELRIET 55 (82)
Q Consensus 25 ~e~l~~e~er~~rE~~lLr~T~eElE~Riet 55 (82)
+..+.++.+....++.-+.+.++.++..+..
T Consensus 437 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 437 LFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444455555555554433
No 226
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=24.18 E-value=2.6e+02 Score=19.65 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCC
Q psy2820 42 LRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVG 80 (82)
Q Consensus 42 Lr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~KG~~ 80 (82)
|...++|-...-+.+......|.+-|.++.+|+...|+.
T Consensus 33 l~~vv~er~ee~~~~~~~~~er~~kl~~~r~~m~~~Gis 71 (135)
T PRK10947 33 LEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGID 71 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 444455555555556666677888899999999888875
No 227
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.17 E-value=1.6e+02 Score=21.52 Aligned_cols=15 Identities=33% Similarity=0.341 Sum_probs=3.5
Q ss_pred HHHHhhhHHHHHHHH
Q psy2820 25 IEVLYTENEHLTREI 39 (82)
Q Consensus 25 ~e~l~~e~er~~rE~ 39 (82)
-|.|..+..|+..|+
T Consensus 26 KE~L~~~~QRLkDE~ 40 (166)
T PF04880_consen 26 KENLREEVQRLKDEL 40 (166)
T ss_dssp HHHHHHCH-------
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 228
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=24.17 E-value=2.4e+02 Score=19.22 Aligned_cols=61 Identities=31% Similarity=0.489 Sum_probs=34.9
Q ss_pred HHHHHhcCCCHHHHHH-HHHHh--hhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHhh
Q psy2820 9 ELRMRLRGPNLEMQNQ-IEVLY--TEN--EHLTREIGILRDTIKELELRIETQKQTLQARDESIK-KLLEMLQN 76 (82)
Q Consensus 9 elr~rmR~P~~E~q~q-~e~l~--~e~--er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIk-KLLEmLq~ 76 (82)
-||-|+.++|+-.|-. +..|. ..| .+...|++ -++-+.+|..-+.. ..+..|| |+|+++++
T Consensus 45 al~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~eva-s~~fl~~l~~l~~~------~~~~~Vk~kil~li~~ 111 (142)
T cd03569 45 ALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVA-SREFMDELKDLIKT------TKNEEVRQKILELIQA 111 (142)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHh-hHHHHHHHHHHHcc------cCCHHHHHHHHHHHHH
Confidence 4677887777544322 22111 233 66777776 57778888776654 2344444 66666654
No 229
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=24.05 E-value=2.2e+02 Score=18.63 Aligned_cols=10 Identities=60% Similarity=0.677 Sum_probs=4.6
Q ss_pred hhHHHHHHHH
Q psy2820 62 ARDESIKKLL 71 (82)
Q Consensus 62 aRDESIkKLL 71 (82)
.+-++||..+
T Consensus 78 ~~~e~ik~~l 87 (110)
T PF10828_consen 78 ERRESIKTAL 87 (110)
T ss_pred HHHHHHHHHH
Confidence 3444555443
No 230
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=23.92 E-value=3.3e+02 Score=20.80 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHhhcC
Q psy2820 62 ARDESIKKLLEMLQNKG 78 (82)
Q Consensus 62 aRDESIkKLLEmLq~KG 78 (82)
+.++.+..+-++|..-|
T Consensus 94 a~~~~~~~v~~~L~~AG 110 (308)
T PF11382_consen 94 ADDEDVDAVRELLEQAG 110 (308)
T ss_pred CChHHHHHHHHHHHHCC
Confidence 56677777777776655
No 231
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.75 E-value=1.6e+02 Score=16.88 Aligned_cols=20 Identities=45% Similarity=0.635 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2820 35 LTREIGILRDTIKELELRIE 54 (82)
Q Consensus 35 ~~rE~~lLr~T~eElE~Rie 54 (82)
+.+++.-+++.++++|.+++
T Consensus 46 ~r~~~~~~~k~l~~le~e~~ 65 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555444
No 232
>PRK09737 EcoKI restriction-modification system protein HsdS; Provisional
Probab=23.66 E-value=3.1e+02 Score=20.27 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=13.9
Q ss_pred HHhcCCCHHHHHHHHHHhhh
Q psy2820 12 MRLRGPNLEMQNQIEVLYTE 31 (82)
Q Consensus 12 ~rmR~P~~E~q~q~e~l~~e 31 (82)
+.+--|+.+.|+++-..-..
T Consensus 365 l~IplPpl~EQ~kI~~~l~~ 384 (461)
T PRK09737 365 YPIRVPPLEEQAEIVRRVEQ 384 (461)
T ss_pred CcCCCCCHHHHHHHHHHHHH
Confidence 34567999999987654433
No 233
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=23.54 E-value=4.7e+02 Score=22.42 Aligned_cols=7 Identities=57% Similarity=0.857 Sum_probs=2.8
Q ss_pred HHHHHHH
Q psy2820 64 DESIKKL 70 (82)
Q Consensus 64 DESIkKL 70 (82)
++.|.||
T Consensus 393 e~ni~kL 399 (594)
T PF05667_consen 393 EENIAKL 399 (594)
T ss_pred HHHHHHH
Confidence 3344333
No 234
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.42 E-value=2.6e+02 Score=19.32 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 31 ENEHLTREIGILRDTIKELELRIE 54 (82)
Q Consensus 31 e~er~~rE~~lLr~T~eElE~Rie 54 (82)
+.+....|+.-|.+.++.-|..++
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~ 178 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIE 178 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333
No 235
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=23.39 E-value=3.9e+02 Score=21.32 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGIL 42 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lL 42 (82)
+++.+++.|++|....++++..+
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~ 63 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKA 63 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777776553
No 236
>KOG1760|consensus
Probab=23.36 E-value=2.9e+02 Score=20.20 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2820 42 LRDTIKELELRIETQKQTLQARDESIKKLLEMLQ 75 (82)
Q Consensus 42 Lr~T~eElE~RietQkQTL~aRDESIkKLLEmLq 75 (82)
+.+-+++...+.+.+--+|.++-+||..-++.|.
T Consensus 82 ~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK 115 (131)
T KOG1760|consen 82 LQDQLEEKKETLEKEIEELESELESISARMDELK 115 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777888888888888888887766654
No 237
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=23.22 E-value=4.4e+02 Score=21.90 Aligned_cols=19 Identities=11% Similarity=0.434 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhhHHHHHHH
Q psy2820 52 RIETQKQTLQARDESIKKL 70 (82)
Q Consensus 52 RietQkQTL~aRDESIkKL 70 (82)
.++.+++.|..|...+.++
T Consensus 105 ~Le~ke~~L~~re~eLee~ 123 (514)
T TIGR03319 105 NLEKKEKELSNKEKNLDEK 123 (514)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 238
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=23.19 E-value=2.8e+02 Score=19.69 Aligned_cols=12 Identities=33% Similarity=0.612 Sum_probs=5.3
Q ss_pred HHhhHHHHHHHH
Q psy2820 60 LQARDESIKKLL 71 (82)
Q Consensus 60 L~aRDESIkKLL 71 (82)
|.++-.|+..+|
T Consensus 99 LE~~~~~~~~~l 110 (140)
T PF10473_consen 99 LESLNSSLENLL 110 (140)
T ss_pred HHHHhHHHHHHH
Confidence 444444444444
No 239
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=23.16 E-value=3.6e+02 Score=20.90 Aligned_cols=56 Identities=11% Similarity=0.269 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEML 74 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmL 74 (82)
.+..+-+..|......+..++.-...+|..++..+.....++.+.=+.|..=++-|
T Consensus 332 ~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 332 AEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556666777777778888888888888888888888888877655554444433
No 240
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=23.09 E-value=1e+02 Score=26.81 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 30 TENEHLTREIGILRDTIKELELRIETQK 57 (82)
Q Consensus 30 ~e~er~~rE~~lLr~T~eElE~RietQk 57 (82)
++++.+.+|+.-|++-+.||+..+.+|.
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~laa~~ 52 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAKLAAKP 52 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3556677778888888889888887764
No 241
>PF13971 Mei4: Meiosis-specific protein Mei4
Probab=22.98 E-value=1.2e+02 Score=24.96 Aligned_cols=60 Identities=30% Similarity=0.286 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy2820 4 RQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEM 73 (82)
Q Consensus 4 rqleeelr~rmR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEm 73 (82)
|+.=|.|+.+...-+..-...++.|++|.=++..|+ +..|+ +......+-++++++++.+
T Consensus 40 ReytE~La~~l~~qd~~WK~kae~LE~EvLqlrQeL---------Ll~r~-~s~~~~~~~~~~~~~~~~q 99 (375)
T PF13971_consen 40 REYTEHLAKRLSEQDESWKSKAEALEAEVLQLRQEL---------LLNRI-CSGLFSSGHLASPKKLLDQ 99 (375)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH---------HHHhc-ccccccccCCCCchhhhcc
Confidence 566677888888877778888888888877777777 44444 3333444456666666543
No 242
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=22.86 E-value=2e+02 Score=17.84 Aligned_cols=9 Identities=22% Similarity=0.457 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy2820 41 ILRDTIKEL 49 (82)
Q Consensus 41 lLr~T~eEl 49 (82)
-|++.++.+
T Consensus 74 ~l~~~l~~l 82 (104)
T PF13600_consen 74 ELEEELEAL 82 (104)
T ss_pred HHHHHHHHH
Confidence 333333333
No 243
>PHA02557 22 prohead core protein; Provisional
Probab=22.83 E-value=2.7e+02 Score=22.32 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy2820 39 IGILRDTIKELELRIETQKQTLQARDESIKKL 70 (82)
Q Consensus 39 ~~lLr~T~eElE~RietQkQTL~aRDESIkKL 70 (82)
+.-|.+.|.|+|.++++|.-.+.+.++.|-.+
T Consensus 143 V~em~~~L~E~e~~~~~l~~en~~l~e~i~~~ 174 (271)
T PHA02557 143 VAEMEEELDEMEEELNELFEENVALEEYINEV 174 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777777766554
No 244
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=22.38 E-value=2.9e+02 Score=23.89 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=32.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQ 58 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQ 58 (82)
|..|+..+..+.+.+..+...+.+-+.++|..+...+.
T Consensus 368 Le~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~ 405 (557)
T PF01763_consen 368 LEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYRE 405 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999988876655
No 245
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=22.33 E-value=2.6e+02 Score=18.89 Aligned_cols=6 Identities=33% Similarity=0.816 Sum_probs=2.5
Q ss_pred HHHHHH
Q psy2820 68 KKLLEM 73 (82)
Q Consensus 68 kKLLEm 73 (82)
+.||.+
T Consensus 80 ~~Ll~l 85 (87)
T PF12709_consen 80 QELLKL 85 (87)
T ss_pred HHHHHh
Confidence 344443
No 246
>KOG0995|consensus
Probab=22.16 E-value=2.3e+02 Score=25.00 Aligned_cols=41 Identities=32% Similarity=0.388 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 16 GPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQ 56 (82)
Q Consensus 16 ~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQ 56 (82)
+-+..|-+.++.+.+|.+.-.-|+..|++-..+|-..|+-|
T Consensus 287 ~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 287 SKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666666666666666666666666666666666655
No 247
>KOG0933|consensus
Probab=22.15 E-value=2.1e+02 Score=27.39 Aligned_cols=48 Identities=27% Similarity=0.275 Sum_probs=40.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 9 ELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQ 56 (82)
Q Consensus 9 elr~rmR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQ 56 (82)
+-|-...+--.++...|..+.+.+.....||..+.+-++||+.+.+.|
T Consensus 244 ~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~e 291 (1174)
T KOG0933|consen 244 EKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAE 291 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666678889999999999999999999999999999977665
No 248
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=22.00 E-value=2.5e+02 Score=20.29 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=7.6
Q ss_pred HHHHHHHhhhHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIG 40 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~ 40 (82)
..+-+.|.+|+..+..++.
T Consensus 75 ~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 75 REENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444443333
No 249
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.93 E-value=2.1e+02 Score=17.80 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=14.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 23 NQIEVLYTENEHLTREIGILRDTIKELELRI 53 (82)
Q Consensus 23 ~q~e~l~~e~er~~rE~~lLr~T~eElE~Ri 53 (82)
.+.+.++.+.+.+...+.-++..+.|++.-+
T Consensus 6 ~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~ 36 (129)
T cd00890 6 AQLQQLQQQLEALQQQLQKLEAQLTEYEKAK 36 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555544544444444333
No 250
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=21.86 E-value=1.5e+02 Score=18.54 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhhHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREI 39 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~ 39 (82)
|+...+..|.+|..|+..++
T Consensus 25 EL~~RIa~L~aEI~R~~~~~ 44 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAAI 44 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666655554
No 251
>PF15473 PCNP: PEST, proteolytic signal-containing nuclear protein family
Probab=21.85 E-value=39 Score=25.01 Aligned_cols=8 Identities=50% Similarity=0.916 Sum_probs=6.8
Q ss_pred HHHHHhcC
Q psy2820 9 ELRMRLRG 16 (82)
Q Consensus 9 elr~rmR~ 16 (82)
|-||||||
T Consensus 110 eakmRMrN 117 (150)
T PF15473_consen 110 EAKMRMRN 117 (150)
T ss_pred HHHHHHHh
Confidence 68999986
No 252
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=21.84 E-value=99 Score=22.53 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Q psy2820 42 LRDTIKELELRIETQKQTLQARDES 66 (82)
Q Consensus 42 Lr~T~eElE~RietQkQTL~aRDES 66 (82)
+.+.|..||.+.|.|+|.|.|....
T Consensus 92 l~~kVtSLea~lEkqqQeLkAdhS~ 116 (138)
T PF03954_consen 92 LQDKVTSLEAKLEKQQQELKADHST 116 (138)
T ss_pred HHhHcccHHHHHHHHHHHHhhhHHH
Confidence 6788999999999999999997654
No 253
>KOG0996|consensus
Probab=21.80 E-value=6.7e+02 Score=24.41 Aligned_cols=39 Identities=33% Similarity=0.387 Sum_probs=33.1
Q ss_pred hcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2820 14 LRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELR 52 (82)
Q Consensus 14 mR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~R 52 (82)
.|.--.+|..+++.+.++..+++.++..|.++|.++|.+
T Consensus 811 lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 811 LRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAA 849 (1293)
T ss_pred HHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456777888999999999999999999999999987
No 254
>KOG4005|consensus
Probab=21.59 E-value=1.9e+02 Score=23.59 Aligned_cols=58 Identities=28% Similarity=0.378 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2820 3 VRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQAR 63 (82)
Q Consensus 3 vrqleeelr~rmR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aR 63 (82)
|+-|+||-+ ++++-|--++.+-+.|-++|..+.-++.++|..+-++- -..|-+|+.+-
T Consensus 99 i~dL~een~-~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~--~~~~~~~~v~e 156 (292)
T KOG4005|consen 99 IKDLTEENE-ILQNENDSLRAINESLLAKNHELDSELELLRQELAELK--QQQQHNTRVIE 156 (292)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH--HHHHHhhHHHh
Confidence 566777654 46777888888888888888888888888888775543 33444555443
No 255
>KOG0999|consensus
Probab=21.50 E-value=3.7e+02 Score=24.58 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhhHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREI 39 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~ 39 (82)
.+-++++.|+.|.+|+++|+
T Consensus 5 ~aeq~ve~lr~eierLT~el 24 (772)
T KOG0999|consen 5 MAEQEVEKLRQEIERLTEEL 24 (772)
T ss_pred hhhhhHHHHHHHHHHHHHHH
Confidence 34455666666666666554
No 256
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=21.40 E-value=2.8e+02 Score=18.90 Aligned_cols=24 Identities=17% Similarity=0.468 Sum_probs=16.4
Q ss_pred HHHHHhhHHHHHHHHHHHhhcCCC
Q psy2820 57 KQTLQARDESIKKLLEMLQNKGVG 80 (82)
Q Consensus 57 kQTL~aRDESIkKLLEmLq~KG~~ 80 (82)
+..+..-...++.+++.+++.|+-
T Consensus 49 ~~~~~~~~~~~~~~i~~i~~~Gv~ 72 (120)
T PF09969_consen 49 EAELEELEARLRELIDEIEELGVE 72 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcE
Confidence 344455566777888888888763
No 257
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=21.32 E-value=4.3e+02 Score=21.10 Aligned_cols=20 Identities=40% Similarity=0.692 Sum_probs=10.2
Q ss_pred HHHHHHHHhhhHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIG 40 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~ 40 (82)
++.+++.|.++....++++.
T Consensus 40 l~~~~~~lr~~rn~~sk~i~ 59 (425)
T PRK05431 40 LQTELEELQAERNALSKEIG 59 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554
No 258
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=21.19 E-value=1.2e+02 Score=21.71 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKE 48 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eE 48 (82)
.+.+++..+-.||-++.=|+.-||+-+-+
T Consensus 26 ~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 26 GLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 57788888899999999999999998877
No 259
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=21.18 E-value=3.1e+02 Score=19.41 Aligned_cols=52 Identities=23% Similarity=0.460 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCCHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 4 RQLEEELRMRLRGPNLE-MQNQIEVLYTENEHLTREIGILRDTIKELELRIET 55 (82)
Q Consensus 4 rqleeelr~rmR~P~~E-~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Riet 55 (82)
+.|..-.+.=|++.+.. +..-+.....+.+.+..++.-+++.++.++.....
T Consensus 26 ~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (151)
T PF14584_consen 26 RKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRN 78 (151)
T ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555556777663 44445555666666666666666666666655543
No 260
>KOG3119|consensus
Probab=20.84 E-value=3.5e+02 Score=20.49 Aligned_cols=12 Identities=17% Similarity=0.230 Sum_probs=5.2
Q ss_pred cCCCHHHHHHHH
Q psy2820 15 RGPNLEMQNQIE 26 (82)
Q Consensus 15 R~P~~E~q~q~e 26 (82)
+.-|+-++..-+
T Consensus 200 ~rNN~A~~kSR~ 211 (269)
T KOG3119|consen 200 RRNNEAVRKSRD 211 (269)
T ss_pred HhhhHHHHHhhh
Confidence 334444444433
No 261
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=20.75 E-value=3.4e+02 Score=20.60 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=18.8
Q ss_pred HHHhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy2820 11 RMRLRGPNLEMQNQIEVLYTENEHLTREIGILRD 44 (82)
Q Consensus 11 r~rmR~P~~E~q~q~e~l~~e~er~~rE~~lLr~ 44 (82)
|-|.|.-|.|+.+++..++.+...+..|+.-|+.
T Consensus 88 RDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555544
No 262
>cd08306 Death_FADD Fas-associated Death Domain protein-protein interaction domain. Death domain (DD) found in FAS-associated via death domain (FADD). FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor, FAS, and its DED recruits the initiator caspases, caspase-8 and -10, to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain),
Probab=20.72 E-value=2.3e+02 Score=17.76 Aligned_cols=53 Identities=19% Similarity=0.370 Sum_probs=34.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH------hhHHHHHHHHHHHhhcCC
Q psy2820 27 VLYTENEHLTREIGILRDTIKELELRI-----ETQKQTLQ------ARDESIKKLLEMLQNKGV 79 (82)
Q Consensus 27 ~l~~e~er~~rE~~lLr~T~eElE~Ri-----etQkQTL~------aRDESIkKLLEmLq~KG~ 79 (82)
.+-.+-..++|++.+....|+..+..- |...|.|. +.+-++..|.+.|..-|+
T Consensus 11 ~lG~~Wk~laR~LGlse~~Id~i~~~~~~~~~eq~~~mL~~W~~~~g~~At~~~L~~aL~~~~l 74 (86)
T cd08306 11 NVGRDWRKLARKLGLSETKIESIEEAHPRNLREQVRQSLREWKKIKKKEAKVADLIKALRDCQL 74 (86)
T ss_pred HHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhHCcchHHHHHHHHHHHcCc
Confidence 344555677777777777777776654 44444443 456678888888877664
No 263
>PF10422 LRS4: Monopolin complex subunit LRS4; InterPro: IPR018479 Monopolin is a protein complex, originally identified in Saccharomyces cerevisiae (Baker's yeast), that is required for the segregation of homologous centromeres to opposite poles of a dividing cell during meiosis I []. The orthologous complex in Schizosaccharomyces pombe (Fission yeast) is not required for meiosis I chromosome segregation, but is proposed to play a similar physiological role in clamping microtubule binding sites []. In S. cerevisiae this subunit is called LRS4, and in S. pombe it is known as Mde4 [].; PDB: 3N7N_E.
Probab=20.56 E-value=33 Score=27.05 Aligned_cols=50 Identities=28% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQ 75 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq 75 (82)
+-+|.|+..|-++...+.+|+.-|++ -..+||.++++.=++-||-++-|.
T Consensus 61 l~LQrQi~qLt~~lQ~~~~eneklk~-------~~K~~kalleSkl~~~kk~IdrlK 110 (249)
T PF10422_consen 61 LLLQRQITQLTSQLQSQKQENEKLKE-------LQKTQKALLESKLSNKKKEIDRLK 110 (249)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777776666666666654433 346888888888888888888665
No 264
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=20.48 E-value=3.1e+02 Score=22.96 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy2820 29 YTENEHLTREIGILRDTIKELELRIETQKQTLQARDESI 67 (82)
Q Consensus 29 ~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESI 67 (82)
..|.+.-.-|-.-|++.+.-|.-..++|+|.+..-.+-|
T Consensus 70 e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~ 108 (389)
T PF06216_consen 70 EFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREII 108 (389)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555554443333
No 265
>KOG0963|consensus
Probab=20.43 E-value=5.7e+02 Score=22.87 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCC
Q psy2820 34 HLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVG 80 (82)
Q Consensus 34 r~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~KG~~ 80 (82)
.+.+++.-.+.++++|+..++.| +==+-||+=|-.|+.-+.|
T Consensus 321 ~le~~l~~~~~~leel~~kL~~~-----sDYeeIK~ELsiLk~ief~ 362 (629)
T KOG0963|consen 321 ALEKELKAKISELEELKEKLNSR-----SDYEEIKKELSILKAIEFG 362 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-----ccHHHHHHHHHHHHHhhcC
Confidence 33344444444455554444444 2235566666666665554
No 266
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=20.38 E-value=2.4e+02 Score=17.74 Aligned_cols=27 Identities=19% Similarity=0.275 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 29 YTENEHLTREIGILRDTIKELELRIET 55 (82)
Q Consensus 29 ~~e~er~~rE~~lLr~T~eElE~Riet 55 (82)
..|.|-+...+.-+|.-++.||.|+..
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~ 75 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAA 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777778888888877754
No 267
>KOG3650|consensus
Probab=20.36 E-value=1.7e+02 Score=21.08 Aligned_cols=38 Identities=26% Similarity=0.505 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 18 NLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQ 58 (82)
Q Consensus 18 ~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQ 58 (82)
..|+.++++ .|.-|+.--+.-|+.|++.|-.|+++=|.
T Consensus 47 a~e~~~d~~---EEKaRlItQVLELQnTLdDLSqRVdsVKE 84 (120)
T KOG3650|consen 47 AVEAENDVE---EEKARLITQVLELQNTLDDLSQRVDSVKE 84 (120)
T ss_pred ccccccChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555554 56667777777788888888777776553
No 268
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=20.31 E-value=1.6e+02 Score=19.38 Aligned_cols=20 Identities=35% Similarity=0.569 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhhHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREI 39 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~ 39 (82)
|+.+.+-.|++|.+|+..|+
T Consensus 29 El~eRIalLq~EIeRlkAe~ 48 (65)
T COG5509 29 ELEERIALLQAEIERLKAEL 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666665554
No 269
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=20.27 E-value=3.1e+02 Score=19.08 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy2820 37 REIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQN 76 (82)
Q Consensus 37 rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~ 76 (82)
..+...-+-|+++..++. +=+++++-+++.|++
T Consensus 60 e~V~~QGEqIkel~~e~k-------~qgktL~~I~~~L~~ 92 (102)
T PF01519_consen 60 EKVDKQGEQIKELQVEQK-------AQGKTLQLILKTLQS 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 334444455555555555 445555555555554
No 270
>KOG0982|consensus
Probab=20.20 E-value=5.9e+02 Score=22.29 Aligned_cols=73 Identities=23% Similarity=0.215 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHHHhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHH
Q psy2820 1 MLVRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQT---LQARDESIKKLLEML 74 (82)
Q Consensus 1 mlvrqleeelr~rmR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQT---L~aRDESIkKLLEmL 74 (82)
|=++|||+|- -+.|---+-+..+.+.|-.|..|...++..+|.-+.....--.-+-+. .+-+.+++..|.|-|
T Consensus 304 mr~qqleeen-telRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieel 379 (502)
T KOG0982|consen 304 MRDQQLEEEN-TELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEEL 379 (502)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3467777763 122333344556677777777777888888877665443322222222 355667777776654
No 271
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.16 E-value=3.3e+02 Score=21.29 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHhhhHHHHH
Q psy2820 17 PNLEMQNQIEVLYTENEHLT 36 (82)
Q Consensus 17 P~~E~q~q~e~l~~e~er~~ 36 (82)
+-.++++|+..|+.+.+++.
T Consensus 57 ~~~~l~~Ql~~l~g~i~~L~ 76 (262)
T COG1729 57 RLTQLEQQLRQLQGKIEELR 76 (262)
T ss_pred ccHHHHHHHHHHHhhHHHHH
Confidence 45667777777766655544
No 272
>KOG3335|consensus
Probab=20.03 E-value=3e+02 Score=20.95 Aligned_cols=33 Identities=24% Similarity=0.225 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy2820 32 NEHLTREIGILRDTIKELELRIETQKQTLQARD 64 (82)
Q Consensus 32 ~er~~rE~~lLr~T~eElE~RietQkQTL~aRD 64 (82)
++....|+.-||.-+++||..|+.+++-+..=+
T Consensus 101 ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 101 EEKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567888899999999998888877765544
Done!