Query psy2820
Match_columns 82
No_of_seqs 23 out of 25
Neff 1.8
Searched_HMMs 29240
Date Fri Aug 16 17:47:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2820.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2820hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cve_A Homer protein homolog 1 93.3 0.52 1.8E-05 29.8 7.2 52 19-77 3-54 (72)
2 1deb_A APC protein, adenomatou 91.4 1.4 4.8E-05 27.2 7.2 47 20-77 7-53 (54)
3 2yy0_A C-MYC-binding protein; 91.0 0.47 1.6E-05 27.9 4.6 32 23-54 19-50 (53)
4 3oja_B Anopheles plasmodium-re 90.8 1.2 4.2E-05 33.0 7.7 55 22-76 529-583 (597)
5 2wt7_A Proto-oncogene protein 89.3 0.76 2.6E-05 27.1 4.6 36 16-51 23-58 (63)
6 2jee_A YIIU; FTSZ, septum, coi 88.8 3.4 0.00011 26.6 8.3 55 21-75 25-79 (81)
7 1t2k_D Cyclic-AMP-dependent tr 88.1 1.7 5.7E-05 25.2 5.4 34 17-50 23-56 (61)
8 3cvf_A Homer-3, homer protein 87.7 2.2 7.4E-05 27.3 6.2 52 19-77 9-60 (79)
9 2xdj_A Uncharacterized protein 85.4 4.4 0.00015 25.6 6.7 33 17-56 21-53 (83)
10 1jnm_A Proto-oncogene C-JUN; B 84.8 1.3 4.4E-05 25.8 3.7 33 17-49 23-55 (62)
11 2dgc_A Protein (GCN4); basic d 83.6 0.72 2.5E-05 27.6 2.3 31 16-46 30-60 (63)
12 3trt_A Vimentin; cytoskeleton, 83.3 5.1 0.00017 23.5 6.1 18 38-55 57-74 (77)
13 2ve7_A Kinetochore protein HEC 82.6 6.4 0.00022 29.0 7.6 46 30-75 185-230 (315)
14 3tnu_A Keratin, type I cytoske 82.2 8 0.00027 25.0 8.9 49 15-63 37-85 (131)
15 3tnu_B Keratin, type II cytosk 81.7 8.2 0.00028 24.8 8.9 46 19-64 39-84 (129)
16 4h22_A Leucine-rich repeat fli 80.9 6.1 0.00021 26.6 6.4 49 20-68 41-89 (103)
17 1gd2_E Transcription factor PA 80.8 3.4 0.00012 25.5 4.8 35 20-54 33-67 (70)
18 2kj1_A BM2 protein; cytoplasmi 80.6 5.1 0.00017 26.6 5.8 41 9-62 11-51 (89)
19 3swk_A Vimentin; cytoskeleton, 79.6 8.9 0.0003 23.9 7.7 36 20-55 4-39 (86)
20 1gu4_A CAAT/enhancer binding p 79.2 4.3 0.00015 25.4 4.9 33 17-49 37-69 (78)
21 1t2k_D Cyclic-AMP-dependent tr 78.6 7.3 0.00025 22.4 6.0 39 23-61 22-60 (61)
22 1hjb_A Ccaat/enhancer binding 77.3 3.8 0.00013 26.2 4.3 31 18-48 38-68 (87)
23 3oja_A Leucine-rich immune mol 76.2 16 0.00054 26.7 7.8 41 21-61 433-473 (487)
24 2wt7_A Proto-oncogene protein 74.8 10 0.00035 22.1 6.5 40 22-61 22-61 (63)
25 2l5g_B Putative uncharacterize 73.9 9 0.00031 22.4 4.9 33 19-51 5-37 (42)
26 4emc_A Monopolin complex subun 73.7 22 0.00074 26.0 8.0 38 27-64 24-61 (190)
27 1go4_E MAD1 (mitotic arrest de 72.2 8 0.00027 25.6 5.0 34 22-55 11-44 (100)
28 4etp_A Kinesin-like protein KA 69.2 20 0.00069 27.1 7.2 53 24-76 4-56 (403)
29 3gp4_A Transcriptional regulat 68.9 21 0.00071 23.1 7.6 48 22-69 80-127 (142)
30 1ci6_A Transcription factor AT 68.5 15 0.00052 21.5 6.3 35 25-59 25-59 (63)
31 3ol1_A Vimentin; structural ge 67.3 22 0.00076 22.9 8.4 36 20-55 24-59 (119)
32 3nr7_A DNA-binding protein H-N 67.3 21 0.00072 22.6 6.4 40 41-80 35-74 (86)
33 1dh3_A Transcription factor CR 66.7 3.4 0.00012 24.0 2.0 25 20-44 26-50 (55)
34 3na7_A HP0958; flagellar bioge 64.4 33 0.0011 23.9 8.0 37 24-60 91-127 (256)
35 3hnw_A Uncharacterized protein 64.4 29 0.00099 23.2 9.0 52 20-71 72-123 (138)
36 1ci6_A Transcription factor AT 64.3 8.7 0.0003 22.6 3.5 32 18-49 25-56 (63)
37 3m91_A Proteasome-associated A 64.1 19 0.00066 21.1 5.8 35 20-54 13-47 (51)
38 1mz9_A Cartilage oligomeric ma 63.8 14 0.00048 20.6 4.2 26 23-48 16-41 (45)
39 4emc_A Monopolin complex subun 63.7 19 0.00064 26.4 5.9 30 22-51 26-55 (190)
40 2k48_A Nucleoprotein; viral pr 63.4 32 0.0011 23.4 7.4 51 20-70 32-87 (107)
41 2dfs_A Myosin-5A; myosin-V, in 63.4 37 0.0012 29.1 8.4 33 26-58 1019-1051(1080)
42 2dfs_A Myosin-5A; myosin-V, in 63.0 72 0.0025 27.3 10.1 29 25-53 986-1014(1080)
43 3s9g_A Protein hexim1; cyclin 61.6 9.2 0.00031 26.0 3.7 38 4-43 47-85 (104)
44 1jnm_A Proto-oncogene C-JUN; B 60.1 17 0.00057 20.9 4.2 38 23-60 22-59 (62)
45 1x79_B RAB GTPase binding effe 59.6 36 0.0012 22.7 8.3 57 20-76 3-66 (112)
46 2ve7_A Kinetochore protein HEC 59.6 10 0.00034 28.0 3.9 61 6-69 168-228 (315)
47 1wt6_A Myotonin-protein kinase 59.5 15 0.0005 23.9 4.2 43 36-78 30-75 (81)
48 3qh9_A Liprin-beta-2; coiled-c 58.5 35 0.0012 22.1 7.6 49 28-76 17-79 (81)
49 3n7n_E Monopolin complex subun 57.8 2.1 7.3E-05 28.7 0.0 50 18-74 45-94 (95)
50 3i00_A HIP-I, huntingtin-inter 57.6 39 0.0013 22.4 7.2 43 24-66 16-70 (120)
51 3l4q_C Phosphatidylinositol 3- 57.5 48 0.0016 23.4 9.2 60 21-80 101-160 (170)
52 2zqm_A Prefoldin beta subunit 57.1 26 0.00091 21.0 4.9 29 21-49 18-46 (117)
53 1nkp_B MAX protein, MYC proto- 57.1 10 0.00034 22.6 2.9 29 25-53 49-77 (83)
54 3ghg_A Fibrinogen alpha chain; 56.9 22 0.00077 29.8 5.9 45 31-75 103-148 (562)
55 3kqg_A Langerin, C-type lectin 56.8 30 0.001 21.6 5.2 38 21-62 4-41 (182)
56 3w03_C DNA repair protein XRCC 55.8 23 0.00079 25.3 5.1 31 24-54 153-183 (184)
57 3s4r_A Vimentin; alpha-helix, 55.2 24 0.00084 22.1 4.7 32 37-68 56-90 (93)
58 3hhm_B NISH2 P85alpha; PI3KCA, 55.1 37 0.0012 25.8 6.4 11 70-80 259-269 (373)
59 1fxk_A Prefoldin; archaeal pro 55.0 31 0.001 20.5 5.1 30 21-50 13-42 (107)
60 1nkp_B MAX protein, MYC proto- 54.9 24 0.00084 20.9 4.4 21 23-43 54-74 (83)
61 2wuj_A Septum site-determining 53.2 21 0.00071 20.6 3.8 33 20-52 24-56 (57)
62 3m9b_A Proteasome-associated A 53.2 28 0.00096 26.1 5.4 36 20-55 58-93 (251)
63 1nlw_A MAD protein, MAX dimeri 53.1 19 0.00065 22.0 3.8 30 25-54 49-78 (80)
64 4aj5_A SKA1, spindle and kinet 52.8 47 0.0016 21.9 7.0 43 30-76 37-79 (91)
65 1a93_B MAX protein, coiled coi 51.2 26 0.00089 19.6 3.8 25 23-47 7-31 (34)
66 2no2_A HIP-I, huntingtin-inter 50.2 48 0.0017 21.3 8.4 54 18-71 10-74 (107)
67 2wt7_B Transcription factor MA 49.4 47 0.0016 21.4 5.4 22 28-49 53-74 (90)
68 1uii_A Geminin; human, DNA rep 48.9 34 0.0012 22.2 4.7 25 21-45 51-75 (83)
69 3u06_A Protein claret segregat 48.6 80 0.0028 24.1 7.4 48 28-75 8-55 (412)
70 1kd8_A GABH AIV, GCN4 acid bas 48.6 36 0.0012 19.4 4.8 29 22-50 7-35 (36)
71 4fi5_A Nucleoprotein; structur 48.1 63 0.0021 22.0 7.9 46 25-70 24-74 (113)
72 2ic9_A Nucleocapsid protein; h 47.3 59 0.002 21.5 7.2 47 24-70 6-57 (96)
73 2jn6_A Protein CGL2762, transp 46.8 1.1 3.6E-05 26.3 -2.6 26 20-45 63-88 (97)
74 3m48_A General control protein 46.5 30 0.001 19.3 3.6 26 21-46 5-30 (33)
75 2hy6_A General control protein 46.0 32 0.0011 19.4 3.7 27 21-47 6-32 (34)
76 3tnu_B Keratin, type II cytosk 45.6 54 0.0018 20.9 5.3 27 33-59 32-58 (129)
77 2dgc_A Protein (GCN4); basic d 44.9 45 0.0015 19.6 4.4 29 22-50 29-57 (63)
78 1ik9_A DNA repair protein XRCC 44.9 37 0.0013 24.1 4.8 29 20-48 136-164 (213)
79 3w03_C DNA repair protein XRCC 44.9 26 0.00089 25.1 4.0 24 18-41 154-177 (184)
80 3tnu_A Keratin, type I cytoske 44.6 38 0.0013 21.8 4.4 28 32-59 33-60 (131)
81 2wt7_B Transcription factor MA 44.1 62 0.0021 20.8 6.2 23 21-43 60-82 (90)
82 2rjz_A PILO protein; structura 43.4 19 0.00066 23.7 2.9 46 31-77 9-54 (147)
83 3mq9_A Bone marrow stromal ant 43.2 75 0.0026 23.0 6.2 56 15-70 396-469 (471)
84 3kin_B Kinesin heavy chain; mo 43.1 45 0.0015 21.4 4.6 31 27-57 86-116 (117)
85 1nkp_A C-MYC, MYC proto-oncoge 42.1 56 0.0019 20.0 4.8 13 28-40 57-69 (88)
86 2yy0_A C-MYC-binding protein; 42.0 49 0.0017 19.1 4.9 27 30-56 19-45 (53)
87 2ic6_A Nucleocapsid protein; h 41.9 66 0.0023 20.5 7.4 47 24-70 6-57 (78)
88 1fxk_C Protein (prefoldin); ar 41.7 62 0.0021 20.1 6.5 35 42-76 9-43 (133)
89 1hjb_A Ccaat/enhancer binding 41.0 66 0.0023 20.3 6.3 40 24-63 37-76 (87)
90 1lwu_C Fibrinogen gamma chain; 40.4 1.1E+02 0.0039 23.0 7.1 12 46-57 28-39 (323)
91 1nlw_A MAD protein, MAX dimeri 40.3 61 0.0021 19.6 4.8 27 21-47 52-78 (80)
92 3hnw_A Uncharacterized protein 40.1 80 0.0027 21.0 8.0 35 21-55 80-114 (138)
93 1go4_E MAD1 (mitotic arrest de 40.0 45 0.0015 21.9 4.3 29 20-48 16-44 (100)
94 3htk_A Structural maintenance 39.3 49 0.0017 18.2 7.6 46 26-71 8-53 (60)
95 2xdj_A Uncharacterized protein 38.4 71 0.0024 19.9 6.0 38 15-52 26-63 (83)
96 3gpv_A Transcriptional regulat 37.7 80 0.0027 20.3 5.3 21 40-60 98-118 (148)
97 4e61_A Protein BIM1; EB1-like 36.8 59 0.002 21.7 4.5 34 18-51 6-39 (106)
98 3s9g_A Protein hexim1; cyclin 36.6 45 0.0015 22.6 3.9 24 20-43 69-92 (104)
99 3vp9_A General transcriptional 36.0 45 0.0015 21.7 3.7 43 34-79 47-89 (92)
100 1vcs_A Vesicle transport throu 35.9 64 0.0022 20.1 4.4 40 2-43 53-94 (102)
101 2jee_A YIIU; FTSZ, septum, coi 35.8 85 0.0029 20.0 5.3 36 18-53 36-71 (81)
102 1ses_A Seryl-tRNA synthetase; 35.5 1.4E+02 0.0049 22.5 7.0 21 20-40 39-59 (421)
103 2zvf_A Alanyl-tRNA synthetase; 35.1 86 0.0029 19.8 6.3 40 10-49 19-58 (171)
104 3u06_A Protein claret segregat 35.1 1.2E+02 0.0039 23.2 6.4 28 32-59 5-32 (412)
105 3c3f_A Alpha/beta peptide with 35.1 54 0.0019 18.4 3.5 25 22-46 7-31 (34)
106 3c3g_A Alpha/beta peptide with 34.9 55 0.0019 18.3 3.5 25 22-46 6-30 (33)
107 1lwu_C Fibrinogen gamma chain; 34.4 1.3E+02 0.0046 22.6 6.7 35 24-58 13-47 (323)
108 2xvc_A ESCRT-III, SSO0910; cel 34.2 27 0.00093 21.6 2.3 18 62-79 37-54 (59)
109 2qag_C Septin-7; cell cycle, c 34.1 8.5 0.00029 29.1 0.0 45 20-64 352-396 (418)
110 3hh0_A Transcriptional regulat 34.0 95 0.0032 20.0 6.1 32 23-54 80-111 (146)
111 2jo8_A Serine/threonine-protei 33.4 20 0.00068 21.4 1.6 22 8-29 13-34 (51)
112 2oxj_A Hybrid alpha/beta pepti 33.3 66 0.0023 18.0 4.1 25 22-46 7-31 (34)
113 2w83_C C-JUN-amino-terminal ki 32.3 84 0.0029 20.2 4.5 13 21-33 7-19 (77)
114 1gmj_A ATPase inhibitor; coile 31.9 1E+02 0.0035 19.8 6.4 35 24-58 38-72 (84)
115 2dq0_A Seryl-tRNA synthetase; 31.8 1.7E+02 0.006 22.4 8.2 23 20-42 42-64 (455)
116 3onj_A T-snare VTI1; helix, HA 31.7 57 0.0019 20.1 3.6 38 2-40 49-90 (97)
117 4b4t_M 26S protease regulatory 31.6 41 0.0014 25.8 3.4 37 22-58 38-74 (434)
118 3q4f_C DNA repair protein XRCC 31.4 38 0.0013 24.8 3.1 20 24-43 162-181 (186)
119 2b5u_A Colicin E3; high resolu 31.4 2.3E+02 0.008 23.7 9.1 45 3-54 297-345 (551)
120 3nmd_A CGMP dependent protein 31.2 99 0.0034 19.4 6.6 29 46-74 35-63 (72)
121 1kd8_B GABH BLL, GCN4 acid bas 31.0 76 0.0026 18.0 4.4 27 22-48 7-33 (36)
122 3qne_A Seryl-tRNA synthetase, 30.9 2E+02 0.0068 22.8 8.2 24 20-43 44-67 (485)
123 2bni_A General control protein 30.8 64 0.0022 18.1 3.3 25 22-46 7-31 (34)
124 1flk_A TNF receptor associated 29.9 1.3E+02 0.0045 20.4 5.8 37 17-53 29-66 (228)
125 3ghg_A Fibrinogen alpha chain; 28.9 1.4E+02 0.0049 25.0 6.4 61 19-79 113-193 (562)
126 3mq7_A Bone marrow stromal ant 28.5 1.1E+02 0.0037 21.1 4.8 28 43-70 70-97 (121)
127 3qwe_A GMIP, GEM-interacting p 28.3 1.4E+02 0.0047 22.2 5.7 33 3-35 175-207 (279)
128 1uo4_A General control protein 28.2 83 0.0029 17.6 3.6 25 22-46 7-31 (34)
129 3okg_A Restriction endonucleas 28.1 1E+02 0.0036 20.8 4.7 46 14-62 360-405 (412)
130 3v1a_A Computational design, M 27.9 51 0.0018 19.3 2.7 25 32-56 22-46 (48)
131 2akf_A Coronin-1A; coiled coil 27.2 86 0.0029 17.4 4.6 23 39-61 8-30 (32)
132 1yzm_A FYVE-finger-containing 27.1 83 0.0029 18.5 3.6 38 20-57 6-48 (51)
133 2gkw_A TNF receptor-associated 27.0 1.4E+02 0.0046 19.6 5.1 21 35-55 12-32 (192)
134 2dq3_A Seryl-tRNA synthetase; 26.7 1.7E+02 0.0057 22.1 6.0 22 20-41 41-62 (425)
135 1deq_A Fibrinogen (alpha chain 26.7 1.8E+02 0.006 23.3 6.4 17 49-65 178-194 (390)
136 2r2v_A GCN4 leucine zipper; co 26.6 90 0.0031 17.5 3.9 25 22-46 7-31 (34)
137 1z0j_B FYVE-finger-containing 25.9 57 0.0019 19.9 2.7 38 21-58 14-56 (59)
138 1f5n_A Interferon-induced guan 24.8 2.7E+02 0.0091 22.3 8.6 38 24-61 488-525 (592)
139 2wvr_A Geminin; DNA replicatio 24.4 1.2E+02 0.004 22.6 4.7 14 30-43 115-128 (209)
140 3lcn_C MRNA transport factor G 23.9 96 0.0033 16.9 3.1 18 46-63 8-25 (29)
141 1nd9_A Translation initiation 23.6 35 0.0012 17.4 1.3 14 66-79 15-28 (49)
142 1gu4_A CAAT/enhancer binding p 23.6 1.4E+02 0.0046 18.4 5.1 37 24-60 37-73 (78)
143 4dyl_A Tyrosine-protein kinase 23.5 2.2E+02 0.0076 20.9 7.3 46 20-65 306-351 (406)
144 3b21_A ORF169B, OSPI; bacteria 23.5 40 0.0014 25.0 2.0 15 66-80 31-45 (220)
145 2j5u_A MREC protein; bacterial 23.4 49 0.0017 23.5 2.4 25 25-49 21-45 (255)
146 1m1j_C Fibrinogen gamma chain; 23.3 2.4E+02 0.0083 21.9 6.5 16 45-60 106-121 (409)
147 1zme_C Proline utilization tra 23.2 92 0.0031 16.8 3.1 9 45-53 52-60 (70)
148 1nkp_A C-MYC, MYC proto-oncoge 23.1 1.4E+02 0.0046 18.2 5.0 19 57-75 68-86 (88)
149 3q4f_C DNA repair protein XRCC 23.0 77 0.0026 23.2 3.4 21 19-39 164-184 (186)
150 2wq1_A General control protein 22.8 1.1E+02 0.0037 17.0 4.1 25 22-46 6-30 (33)
151 1l8d_A DNA double-strand break 21.8 1.4E+02 0.0047 17.9 5.9 38 24-61 65-102 (112)
152 3twe_A Alpha4H; unknown functi 21.7 1E+02 0.0036 16.4 3.4 20 26-45 4-23 (27)
153 2p1h_A APAF-1, apoptotic prote 21.6 69 0.0024 18.6 2.5 19 61-79 49-67 (94)
154 1z0k_B FYVE-finger-containing 20.7 1.1E+02 0.0038 19.0 3.4 38 20-57 24-66 (69)
155 2ijl_A AGR_C_4647P, molybdenum 20.5 22 0.00076 23.3 0.1 59 2-60 58-125 (135)
156 2efr_A General control protein 20.2 2.2E+02 0.0075 19.6 8.8 11 3-13 44-54 (155)
157 4b4t_J 26S protease regulatory 20.1 2.4E+02 0.0081 21.6 5.8 28 51-78 42-69 (405)
No 1
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=93.33 E-value=0.52 Score=29.82 Aligned_cols=52 Identities=25% Similarity=0.397 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNK 77 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~K 77 (82)
+++.+.++.+..+|.. |.++|..+|.+++.=+..=..+...+|++++-|-.|
T Consensus 3 ~~~~~kLq~~E~~N~~-------Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~K 54 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKD-------LEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGK 54 (72)
T ss_dssp CHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 5677888888877765 677888888888887777778888999999988765
No 2
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=91.37 E-value=1.4 Score=27.21 Aligned_cols=47 Identities=28% Similarity=0.432 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNK 77 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~K 77 (82)
-+-+|++.|..||-|+.||+.-=..-+..||.. --..|.++.+||++
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~e-----------ts~mKevlk~lq~~ 53 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETE-----------ASNMKEVLKQLQGS 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhh-----------hhhHHHHHHHHccc
Confidence 356899999999999999998777767666643 23467888888875
No 3
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=90.98 E-value=0.47 Score=27.94 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=28.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 23 NQIEVLYTENEHLTREIGILRDTIKELELRIE 54 (82)
Q Consensus 23 ~q~e~l~~e~er~~rE~~lLr~T~eElE~Rie 54 (82)
..+++|..|++.+..++.-|.++++|+..+++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999988765
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.77 E-value=1.2 Score=32.96 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=36.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQN 76 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~ 76 (82)
+++++....+.+.+.+|+.-+++-++++..++...+|....=+..||.|.+-++.
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 529 RTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444555555556666666666666667777777777888888888876653
No 5
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=89.30 E-value=0.76 Score=27.06 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy2820 16 GPNLEMQNQIEVLYTENEHLTREIGILRDTIKELEL 51 (82)
Q Consensus 16 ~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~ 51 (82)
....+++++++.|.++|..+..|+..|+..+..|..
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888777776665543
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=88.78 E-value=3.4 Score=26.65 Aligned_cols=55 Identities=25% Similarity=0.331 Sum_probs=46.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQ 75 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq 75 (82)
+|-.++.|..+|..+..|+.-++..-+.+...++.=++-..+-++.|..||.-+.
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567778888888888888888888888999999999999999999999987543
No 7
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=88.06 E-value=1.7 Score=25.16 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy2820 17 PNLEMQNQIEVLYTENEHLTREIGILRDTIKELE 50 (82)
Q Consensus 17 P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE 50 (82)
-..+++..++.|.++|..+..++..|+..+..|.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777776665554
No 8
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=87.68 E-value=2.2 Score=27.30 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNK 77 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~K 77 (82)
.++.+.++.+..+|.. |.++|..+|.+++.=++.=..+...++++++-|-.|
T Consensus 9 e~~~~klq~~E~rN~~-------Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~K 60 (79)
T 3cvf_A 9 EETQQKVQDLETRNAE-------LEHQLRAMERSLEEARAERERARAEVGRAAQLLDVS 60 (79)
T ss_dssp -CTTHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4556667777666654 778888888888887777778888999999988765
No 9
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=85.43 E-value=4.4 Score=25.58 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 17 PNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQ 56 (82)
Q Consensus 17 P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQ 56 (82)
...+|++|++.|+.| |.-||-.+|++...|+.-
T Consensus 21 ~~~~Lq~Ql~~Lq~E-------v~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSD-------IDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHH
Confidence 346677777766655 455556666665555543
No 10
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=84.75 E-value=1.3 Score=25.84 Aligned_cols=33 Identities=18% Similarity=0.420 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy2820 17 PNLEMQNQIEVLYTENEHLTREIGILRDTIKEL 49 (82)
Q Consensus 17 P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eEl 49 (82)
-..+++..++.|.++|+.+..++..|+..+..|
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888887777766544
No 11
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=83.63 E-value=0.72 Score=27.62 Aligned_cols=31 Identities=23% Similarity=0.434 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2820 16 GPNLEMQNQIEVLYTENEHLTREIGILRDTI 46 (82)
Q Consensus 16 ~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~ 46 (82)
....+++.+++.|.+||..+..|+.-|+..+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445778888888888888888887777654
No 12
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=83.30 E-value=5.1 Score=23.50 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2820 38 EIGILRDTIKELELRIET 55 (82)
Q Consensus 38 E~~lLr~T~eElE~Riet 55 (82)
|+.-||.+|..|+..|++
T Consensus 57 Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 57 ESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334444444444444443
No 13
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=82.64 E-value=6.4 Score=28.99 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2820 30 TENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQ 75 (82)
Q Consensus 30 ~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq 75 (82)
+|.+.+..++.-|++-++++|..+++.+.....|-+.++|-+++.+
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~rl~~Lqk~~~~~~ 230 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQERSTANKANAERLKRLQKSADLYK 230 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 4666667777777777777788888888777777777777666654
No 14
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.21 E-value=8 Score=25.04 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=38.9
Q ss_pred cCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2820 15 RGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQAR 63 (82)
Q Consensus 15 R~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aR 63 (82)
+.--.|+..++..|.+|.+.+..-..-|..+|.++|.+-+.+...+++.
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~ 85 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEM 85 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345688899999999999999888999999999999988887665544
No 15
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.75 E-value=8.2 Score=24.85 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARD 64 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRD 64 (82)
.|+..++..|.+|.+.+..-..-|..+|.++|.+-+.+...+++.=
T Consensus 39 ~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i 84 (129)
T 3tnu_B 39 SEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKL 84 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778889999999999988889999999999999888776665543
No 16
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=80.92 E-value=6.1 Score=26.56 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIK 68 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIk 68 (82)
|+...+-.++.|+....||+..+..+...+...+..=+..|..||+-|.
T Consensus 41 e~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI~ 89 (103)
T 4h22_A 41 ELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLE 89 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777788888888888888888888888777778888887554
No 17
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=80.83 E-value=3.4 Score=25.48 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIE 54 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Rie 54 (82)
++..++..|..+++.+..|+..|+..+..|...++
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888888888888888888887766554
No 18
>2kj1_A BM2 protein; cytoplasmic domain, coiled coil, transport protein; NMR {Influenza b virus}
Probab=80.64 E-value=5.1 Score=26.60 Aligned_cols=41 Identities=34% Similarity=0.600 Sum_probs=19.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2820 9 ELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQA 62 (82)
Q Consensus 9 elr~rmR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~a 62 (82)
.|.+|+|+||-|- ..||++|||-....-=.--||-|.+|..
T Consensus 11 ~lki~ir~pnke~-------------inrevsilrh~yqkeiqaketmk~~ls~ 51 (89)
T 2kj1_A 11 NMKIRIKGPNKET-------------INREVSILRHSYQKEIQAKETMKEVLSD 51 (89)
T ss_dssp -------CCCHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCHHH-------------HhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3678999999764 4578888886543211223445555543
No 19
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=79.56 E-value=8.9 Score=23.86 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIET 55 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Riet 55 (82)
+++.|++.+..|+.++.-|+.-++.+++.+-.+.|+
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~ 39 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE 39 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999988777764
No 20
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=79.15 E-value=4.3 Score=25.41 Aligned_cols=33 Identities=33% Similarity=0.471 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy2820 17 PNLEMQNQIEVLYTENEHLTREIGILRDTIKEL 49 (82)
Q Consensus 17 P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eEl 49 (82)
-..++++.++.|..||..+..+|..|.+-+.-|
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888777655543
No 21
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=78.63 E-value=7.3 Score=22.37 Aligned_cols=39 Identities=23% Similarity=0.226 Sum_probs=32.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 23 NQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQ 61 (82)
Q Consensus 23 ~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~ 61 (82)
+.++.|..+.+.+..++.-|+..+..|...+..=++-|.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567889999999999999999999999888877666654
No 22
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=77.35 E-value=3.8 Score=26.18 Aligned_cols=31 Identities=32% Similarity=0.468 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy2820 18 NLEMQNQIEVLYTENEHLTREIGILRDTIKE 48 (82)
Q Consensus 18 ~~E~q~q~e~l~~e~er~~rE~~lLr~T~eE 48 (82)
+.++++.++.|..||..+..+|..|.+-+..
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777776666655554443
No 23
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=76.15 E-value=16 Score=26.69 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=25.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQ 61 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~ 61 (82)
+.+.++..+.+.+++.+|..-+++-+.++...|+.=++|++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence 34455555666666666666666666666666666666665
No 24
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=74.84 E-value=10 Score=22.08 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=31.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQ 61 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~ 61 (82)
++.++.|+.+.+.+..++.-|+..|..|...+..=++.|.
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999887776665555543
No 25
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=73.93 E-value=9 Score=22.42 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDTIKELEL 51 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~ 51 (82)
-|+-|+|+..-.|.+.....|.-|++-+++||.
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999888888888888888874
No 26
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=73.69 E-value=22 Score=26.05 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=16.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy2820 27 VLYTENEHLTREIGILRDTIKELELRIETQKQTLQARD 64 (82)
Q Consensus 27 ~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRD 64 (82)
.|..||..+..++....+-++-|..++.+.++...--|
T Consensus 24 ~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~ 61 (190)
T 4emc_A 24 NLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELK 61 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34444444444444444444444444444444443333
No 27
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=72.23 E-value=8 Score=25.56 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=29.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTIKELELRIET 55 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~eElE~Riet 55 (82)
..+++.|..+.+.+.+|..-|++-+++||.+++.
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888899999999999999999999975
No 28
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=69.17 E-value=20 Score=27.14 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=37.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy2820 24 QIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQN 76 (82)
Q Consensus 24 q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~ 76 (82)
+++.+..|.+.+.++..-|...+++++.+++.=++.+..-+.--++|-..+|.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~e 56 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777778888888887777777776655556677666654
No 29
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=68.91 E-value=21 Score=23.13 Aligned_cols=48 Identities=19% Similarity=0.436 Sum_probs=33.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKK 69 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkK 69 (82)
....+.|....+.+..++.-|..+++.++..|+.-.+.+..++++..+
T Consensus 80 ~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~ 127 (142)
T 3gp4_A 80 EARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKD 127 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455666667777777777777777777777777777777776655
No 30
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=68.51 E-value=15 Score=21.48 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=18.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 25 IEVLYTENEHLTREIGILRDTIKELELRIETQKQT 59 (82)
Q Consensus 25 ~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQT 59 (82)
.+.|..+.+.+..++.-|+..+..|+..+..-|+.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555554443
No 31
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=67.30 E-value=22 Score=22.88 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIET 55 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Riet 55 (82)
+++.|++.+..|+.++.-|+.-++..++++-.+.|.
T Consensus 24 ~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~ 59 (119)
T 3ol1_A 24 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE 59 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 688899999999999999998888888887666554
No 32
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=67.29 E-value=21 Score=22.59 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCC
Q psy2820 41 ILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVG 80 (82)
Q Consensus 41 lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~KG~~ 80 (82)
-|+..++|-...-+.+++....|.+.+.++++|+.+.|+.
T Consensus 35 Kl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~~GI~ 74 (86)
T 3nr7_A 35 KLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGID 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4555566666666666777788999999999999999985
No 33
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=66.70 E-value=3.4 Score=24.02 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRD 44 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~ 44 (82)
++..++..|..||..+..++..|+.
T Consensus 26 ~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 26 SLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666655543
No 34
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=64.39 E-value=33 Score=23.86 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=23.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 24 QIEVLYTENEHLTREIGILRDTIKELELRIETQKQTL 60 (82)
Q Consensus 24 q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL 60 (82)
++++|..|.+-+.+++..+.+.+.++..+++..+..+
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l 127 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQ 127 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666665544443
No 35
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=64.36 E-value=29 Score=23.17 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLL 71 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLL 71 (82)
.++.+.+.|.++.+...+|+.-|..-+......+++.++.+..-.+-+..|-
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777777777777776666655555444443
No 36
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=64.32 E-value=8.7 Score=22.57 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy2820 18 NLEMQNQIEVLYTENEHLTREIGILRDTIKEL 49 (82)
Q Consensus 18 ~~E~q~q~e~l~~e~er~~rE~~lLr~T~eEl 49 (82)
..++.++++.|..+|+.+..++.-|+.-+.-|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777766666666555443
No 37
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=64.14 E-value=19 Score=21.08 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIE 54 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Rie 54 (82)
+++.++..|-+-|++++.-+.-.|+-|..|-..++
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999888888888887776665
No 38
>1mz9_A Cartilage oligomeric matrix protein; pentameric coiled-coil domain, protein binding; HET: VDY; 1.70A {Mus musculus} SCOP: h.1.7.1 PDB: 1vdf_A 1fbm_A
Probab=63.75 E-value=14 Score=20.64 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=18.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy2820 23 NQIEVLYTENEHLTREIGILRDTIKE 48 (82)
Q Consensus 23 ~q~e~l~~e~er~~rE~~lLr~T~eE 48 (82)
+-+-.+......+.+|+..||+|+.|
T Consensus 16 ~~~~~~~~~~~qqvkE~~~lr~ti~e 41 (45)
T 1mz9_A 16 AALQDVRELLRQQVKEITFLKNTVME 41 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHhhHHHHHHHHHHHHHhhHhh
Confidence 33444555667888999999999864
No 39
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=63.71 E-value=19 Score=26.37 Aligned_cols=30 Identities=27% Similarity=0.231 Sum_probs=11.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTIKELEL 51 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~eElE~ 51 (82)
+++...|-.+.+-...|+.-|++-+..++.
T Consensus 26 ~~En~~L~~ql~~k~~ei~~L~~ql~sl~~ 55 (190)
T 4emc_A 26 VNENFVLSEKLDTKATEIKQLQKQIDSLNA 55 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 343333333333333333333333333333
No 40
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=63.39 E-value=32 Score=23.36 Aligned_cols=51 Identities=22% Similarity=0.282 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIE-----TQKQTLQARDESIKKL 70 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Rie-----tQkQTL~aRDESIkKL 70 (82)
=+-..++.|+.|.......+.+-|.-+++-+...| .+|+|+.+|..-|.-|
T Consensus 32 ~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsal 87 (107)
T 2k48_A 32 FTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTL 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999998885 7999999998877543
No 41
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=63.38 E-value=37 Score=29.08 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=23.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 26 EVLYTENEHLTREIGILRDTIKELELRIETQKQ 58 (82)
Q Consensus 26 e~l~~e~er~~rE~~lLr~T~eElE~RietQkQ 58 (82)
+.|+....++.+|+..|+..+.+||..|.+|.+
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556777788888888888877777766
No 42
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=63.05 E-value=72 Score=27.31 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=11.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 25 IEVLYTENEHLTREIGILRDTIKELELRI 53 (82)
Q Consensus 25 ~e~l~~e~er~~rE~~lLr~T~eElE~Ri 53 (82)
+..|..|.+.+..++.-+.+..+++|.++
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee~~ 1014 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444433333344444433
No 43
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=61.55 E-value=9.2 Score=26.04 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=20.9
Q ss_pred HHHHHHH-HHHhcCCCHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2820 4 RQLEEEL-RMRLRGPNLEMQNQIEVLYTENEHLTREIGILR 43 (82)
Q Consensus 4 rqleeel-r~rmR~P~~E~q~q~e~l~~e~er~~rE~~lLr 43 (82)
.++|+|- |+|+. +.+.-.++..|.+|.+++.+|+.-|+
T Consensus 47 s~le~e~~rlr~~--~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 47 SRMEDENNRLRLE--SKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3455553 33332 34445666666666666666665544
No 44
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=60.05 E-value=17 Score=20.92 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=27.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 23 NQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTL 60 (82)
Q Consensus 23 ~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL 60 (82)
+.++.|..+.+.+..++.-|+..+..|...+..=+|-|
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888877766544443
No 45
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=59.60 E-value=36 Score=22.74 Aligned_cols=57 Identities=26% Similarity=0.237 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHhh
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIE-------TQKQTLQARDESIKKLLEMLQN 76 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Rie-------tQkQTL~aRDESIkKLLEmLq~ 76 (82)
|-..|++.|+++-..+.+++.-+++--.+||.-+. .|-+.|..+-.--..+|.+||.
T Consensus 3 ~t~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq 66 (112)
T 1x79_B 3 ETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQ 66 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777766666766554 3556777777777777777764
No 46
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=59.56 E-value=10 Score=27.95 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy2820 6 LEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKK 69 (82)
Q Consensus 6 leeelr~rmR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkK 69 (82)
+++|+.-++..=+-...++++.|.++++.+..|+.-|.+..+... .+..+.+.+-..++..
T Consensus 168 ~~~e~~~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~---k~n~~rl~~Lqk~~~~ 228 (315)
T 2ve7_A 168 MNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERSTAN---KANAERLKRLQKSADL 228 (315)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHH
Confidence 344444444221122367899999999999999999977654444 4666667777777643
No 47
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=59.53 E-value=15 Score=23.89 Aligned_cols=43 Identities=23% Similarity=0.490 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHhhcC
Q psy2820 36 TREIGILRDTIKELELRI---ETQKQTLQARDESIKKLLEMLQNKG 78 (82)
Q Consensus 36 ~rE~~lLr~T~eElE~Ri---etQkQTL~aRDESIkKLLEmLq~KG 78 (82)
..|+.-.|.+.--.+.++ +.+-+.|.+-=+-.++-++.||+-|
T Consensus 30 ~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~~ 75 (81)
T 1wt6_A 30 SREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAEG 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344444444444443332 2333444444444455555555544
No 48
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=58.52 E-value=35 Score=22.14 Aligned_cols=49 Identities=22% Similarity=0.346 Sum_probs=34.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhHHHHHHHHHHHhh
Q psy2820 28 LYTENEHLTREIGILRDTIKELEL--------------RIETQKQTLQARDESIKKLLEMLQN 76 (82)
Q Consensus 28 l~~e~er~~rE~~lLr~T~eElE~--------------RietQkQTL~aRDESIkKLLEmLq~ 76 (82)
-+...+-+..|+-.||--++|||. .|-+=++.|..+|..|+.|-+-|-+
T Consensus 17 ~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 17 KQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 344455677788888888888874 3445566788888888888776643
No 49
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=57.81 E-value=2.1 Score=28.71 Aligned_cols=50 Identities=24% Similarity=0.174 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2820 18 NLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEML 74 (82)
Q Consensus 18 ~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmL 74 (82)
.+-+|.|+..|-++...+.+|+.-|++. ..+||..+.++=++-||.+|-|
T Consensus 45 tl~LQrQv~qLt~~lQ~~~~Ene~Lke~-------qKtqkal~ESKL~~~kk~ie~l 94 (95)
T 3n7n_E 45 TLFLQRQIAQLNKQLQLSFQENEKLLSV-------QKNQKALYQSKLSSKDAFIDDL 94 (95)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhc
Confidence 4567889999988888888888766654 3589999999999999888765
No 50
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=57.64 E-value=39 Score=22.41 Aligned_cols=43 Identities=33% Similarity=0.416 Sum_probs=26.6
Q ss_pred HHHHHhhhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH-HHhhHHH
Q psy2820 24 QIEVLYTENEHLTREI-----------GILRDTIKELELRIETQKQT-LQARDES 66 (82)
Q Consensus 24 q~e~l~~e~er~~rE~-----------~lLr~T~eElE~RietQkQT-L~aRDES 66 (82)
+++.|+.|.+++..|+ .-|+.-|-+||..++.|++. -.|++|+
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~ 70 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDC 70 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544444 55778888899999998754 2344443
No 51
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=57.52 E-value=48 Score=23.42 Aligned_cols=60 Identities=18% Similarity=0.282 Sum_probs=42.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCC
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVG 80 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~KG~~ 80 (82)
++..++.|+.-.+++..++.....-..++|-+|.+.|=-|..=---=.+.++-|..+|++
T Consensus 101 LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~~Gv~ 160 (170)
T 3l4q_C 101 LKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQKGAR 160 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 567777787778888887777777777888888887765543222223567788888886
No 52
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=57.09 E-value=26 Score=21.01 Aligned_cols=29 Identities=14% Similarity=0.371 Sum_probs=13.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKEL 49 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eEl 49 (82)
+++++..+.+....+..++.-+..|++|+
T Consensus 18 l~~~~~~l~~q~~~l~~~~~e~~~~~~eL 46 (117)
T 2zqm_A 18 YQQQLQLVVQQKQKVQLELTEAKKALDEI 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444
No 53
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=57.07 E-value=10 Score=22.64 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=14.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 25 IEVLYTENEHLTREIGILRDTIKELELRI 53 (82)
Q Consensus 25 ~e~l~~e~er~~rE~~lLr~T~eElE~Ri 53 (82)
+..|+.+++.+..|+.-|+.-...|+.++
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555554444
No 54
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=56.85 E-value=22 Score=29.76 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=32.9
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2820 31 ENEHLTREIG-ILRDTIKELELRIETQKQTLQARDESIKKLLEMLQ 75 (82)
Q Consensus 31 e~er~~rE~~-lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq 75 (82)
+|+....|+. -||+.+..|+.+|++|.+.+.+=.-+|..++.-+|
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQ 148 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMK 148 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666 88999999999999998888776666666654443
No 55
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=56.76 E-value=30 Score=21.57 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=18.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQA 62 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~a 62 (82)
+..+++.|..+.+ .+.-|..++++|+.+++.-.+.|..
T Consensus 4 l~~~~~~l~~~~~----~~~~l~~~~~~l~~~l~~~~~~l~~ 41 (182)
T 3kqg_A 4 LNAQIPELKSDLE----KASALNTKIRALQGSLENMSKLLKR 41 (182)
T ss_dssp ---------CHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556655554 3456677788888777766665543
No 56
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=55.81 E-value=23 Score=25.35 Aligned_cols=31 Identities=29% Similarity=0.308 Sum_probs=19.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 24 QIEVLYTENEHLTREIGILRDTIKELELRIE 54 (82)
Q Consensus 24 q~e~l~~e~er~~rE~~lLr~T~eElE~Rie 54 (82)
.+..|+++|+|+.+|+..|+.--..+..|+|
T Consensus 153 ~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 153 TIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777777777766665555544443
No 57
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=55.20 E-value=24 Score=22.09 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHH
Q psy2820 37 REIGILRDTIKELE---LRIETQKQTLQARDESIK 68 (82)
Q Consensus 37 rE~~lLr~T~eElE---~RietQkQTL~aRDESIk 68 (82)
.+|.-||..|..+. .+++.+...|.+=++.+|
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555543 234444444555444444
No 58
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=55.07 E-value=37 Score=25.84 Aligned_cols=11 Identities=45% Similarity=0.543 Sum_probs=0.0
Q ss_pred HHHHHhhcCCC
Q psy2820 70 LLEMLQNKGVG 80 (82)
Q Consensus 70 LLEmLq~KG~~ 80 (82)
.++-|+.+|++
T Consensus 259 ~~~~L~~~g~~ 269 (373)
T 3hhm_B 259 YLMWLTQKGVR 269 (373)
T ss_dssp -----------
T ss_pred HHHHHHHcCCC
Confidence 34456666654
No 59
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=55.01 E-value=31 Score=20.47 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELE 50 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE 50 (82)
+++++..+.+....+..++.-+..|++|++
T Consensus 13 lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~ 42 (107)
T 1fxk_A 13 LQQQAQAISVQKQTVEMQINETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555444
No 60
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=54.90 E-value=24 Score=20.87 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=8.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHH
Q psy2820 23 NQIEVLYTENEHLTREIGILR 43 (82)
Q Consensus 23 ~q~e~l~~e~er~~rE~~lLr 43 (82)
++.+.|..|.+.+.+++..|+
T Consensus 54 ~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 54 RKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 61
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=53.23 E-value=21 Score=20.58 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELR 52 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~R 52 (82)
|+-.=++.+-.+.+.+.+|+.-|++.++.++.+
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455556666677777777777777777766654
No 62
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=53.16 E-value=28 Score=26.12 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIET 55 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Riet 55 (82)
+++.+++.|.+-|+++..++.-+++-+..|...|+.
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888887777777777777666654
No 63
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=53.11 E-value=19 Score=21.97 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=16.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 25 IEVLYTENEHLTREIGILRDTIKELELRIE 54 (82)
Q Consensus 25 ~e~l~~e~er~~rE~~lLr~T~eElE~Rie 54 (82)
+..|+.++..+..|+.-|+.-.++|..+++
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555555554443
No 64
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=52.80 E-value=47 Score=21.93 Aligned_cols=43 Identities=35% Similarity=0.461 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy2820 30 TENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQN 76 (82)
Q Consensus 30 ~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~ 76 (82)
+=......|+..+-+-+.++|..|.-|+|++. |.|.|-+-++.
T Consensus 37 ~~L~Kig~Ei~~l~eLLn~~E~eV~~Qe~~~~----sLKEL~~s~e~ 79 (91)
T 4aj5_A 37 TVLNKIGDEIIVINELLNKLELEIQYQEQTNN----SLKELCESLEE 79 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 33456677999999999999999999999986 56666555543
No 65
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=51.17 E-value=26 Score=19.56 Aligned_cols=25 Identities=12% Similarity=0.311 Sum_probs=12.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH
Q psy2820 23 NQIEVLYTENEHLTREIGILRDTIK 47 (82)
Q Consensus 23 ~q~e~l~~e~er~~rE~~lLr~T~e 47 (82)
....+.+++.|.+.+.+.+|+.-+.
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555443
No 66
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=50.21 E-value=48 Score=21.35 Aligned_cols=54 Identities=24% Similarity=0.339 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhHHHHHHHH
Q psy2820 18 NLEMQNQIEVLYTENEHLTREIGILRDTIKELE-----------LRIETQKQTLQARDESIKKLL 71 (82)
Q Consensus 18 ~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE-----------~RietQkQTL~aRDESIkKLL 71 (82)
|.|.+.|+......++...++..-|...|.++. ..|++-++-|.+|+..|..|=
T Consensus 10 ~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq 74 (107)
T 2no2_A 10 NAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQ 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777766666666666666666666644 234556667777777665543
No 67
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=49.42 E-value=47 Score=21.38 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=8.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHH
Q psy2820 28 LYTENEHLTREIGILRDTIKEL 49 (82)
Q Consensus 28 l~~e~er~~rE~~lLr~T~eEl 49 (82)
|..|+..+..|+.-|+....++
T Consensus 53 LE~e~~~L~~e~~~L~~e~~~~ 74 (90)
T 2wt7_B 53 LENEKTQLIQQVEQLKQEVSRL 74 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 68
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=48.90 E-value=34 Score=22.15 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=10.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDT 45 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T 45 (82)
+..+++.+..|+..+..|+.-|+..
T Consensus 51 Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 51 LHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333
No 69
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=48.59 E-value=80 Score=24.08 Aligned_cols=48 Identities=25% Similarity=0.199 Sum_probs=19.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2820 28 LYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQ 75 (82)
Q Consensus 28 l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq 75 (82)
|..|.+++...+.-|..-++++...++..++.|..=+---|+|-.++|
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~ 55 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVM 55 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444444444444332333345555554
No 70
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=48.59 E-value=36 Score=19.36 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=23.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTIKELE 50 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~eElE 50 (82)
...|+.|-.++.++..|+.-|++-+.+-|
T Consensus 7 E~kVEeLl~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 7 EAEVEEIESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 34678889999999999999888877644
No 71
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=48.11 E-value=63 Score=22.04 Aligned_cols=46 Identities=24% Similarity=0.316 Sum_probs=39.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHH
Q psy2820 25 IEVLYTENEHLTREIGILRDTIKELELRIE-----TQKQTLQARDESIKKL 70 (82)
Q Consensus 25 ~e~l~~e~er~~rE~~lLr~T~eElE~Rie-----tQkQTL~aRDESIkKL 70 (82)
++.|+.|.......+.+-|.-+++-+...| .+|+|+.+|..-|.-|
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~l 74 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSI 74 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 678888888888999999999999888875 6999999998877644
No 72
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=47.33 E-value=59 Score=21.52 Aligned_cols=47 Identities=21% Similarity=0.308 Sum_probs=38.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHH
Q psy2820 24 QIEVLYTENEHLTREIGILRDTIKELELRIE-----TQKQTLQARDESIKKL 70 (82)
Q Consensus 24 q~e~l~~e~er~~rE~~lLr~T~eElE~Rie-----tQkQTL~aRDESIkKL 70 (82)
.++.|+.|.......+.+-|.-+++-+...+ .+|+|+.+|-.-|.-|
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~l 57 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSAL 57 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 3677888888888889999999998888875 6999999998877543
No 73
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=46.82 E-value=1.1 Score=26.29 Aligned_cols=26 Identities=19% Similarity=0.099 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDT 45 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T 45 (82)
....++..|..|+.++..|+.+|.++
T Consensus 63 ~~~~ei~~L~~e~~~L~~e~~~Lkk~ 88 (97)
T 2jn6_A 63 SEAEQIRQLKKENALQRARTRHPAES 88 (97)
T ss_dssp HTHHHHHHHHHCGGGGGGTTSCCCGG
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888877654
No 74
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=46.45 E-value=30 Score=19.35 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=20.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTI 46 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~ 46 (82)
+...++.|-++|..+..|+.-|++-+
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 44578889999999999998887654
No 75
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=46.03 E-value=32 Score=19.38 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=21.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIK 47 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~e 47 (82)
+...++.|-.++.++..|+.-|++.+.
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 345688899999999999998888764
No 76
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=45.61 E-value=54 Score=20.91 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 33 EHLTREIGILRDTIKELELRIETQKQT 59 (82)
Q Consensus 33 er~~rE~~lLr~T~eElE~RietQkQT 59 (82)
.....|+.-+|.+|..|+..|++++-.
T Consensus 32 ~~~k~Ei~elrr~iq~L~~el~~l~~~ 58 (129)
T 3tnu_B 32 RNTKHEISEMNRMIQRLRAEIDNVKKQ 58 (129)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344567777777777777777766543
No 77
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=44.94 E-value=45 Score=19.59 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=19.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTIKELE 50 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~eElE 50 (82)
++.++.|.++.+.+..|+.-|+..+..|-
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777666665543
No 78
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=44.93 E-value=37 Score=24.12 Aligned_cols=29 Identities=31% Similarity=0.342 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKE 48 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eE 48 (82)
+++++...|..+++++.+++.-|.+.+++
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~ 164 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEK 164 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666555555444
No 79
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=44.88 E-value=26 Score=25.06 Aligned_cols=24 Identities=38% Similarity=0.266 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHH
Q psy2820 18 NLEMQNQIEVLYTENEHLTREIGI 41 (82)
Q Consensus 18 ~~E~q~q~e~l~~e~er~~rE~~l 41 (82)
+.+++.+++.|+.||||+.+|..-
T Consensus 154 ~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 154 IAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999999999998763
No 80
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=44.64 E-value=38 Score=21.78 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 32 NEHLTREIGILRDTIKELELRIETQKQT 59 (82)
Q Consensus 32 ~er~~rE~~lLr~T~eElE~RietQkQT 59 (82)
......|+.-+|.+|..|+..|++++-.
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~ 60 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSM 60 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344557777788888888777766543
No 81
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=44.11 E-value=62 Score=20.81 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=10.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILR 43 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr 43 (82)
++.+++.|..|+.+..+|+..++
T Consensus 60 L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 60 LIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 82
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=43.44 E-value=19 Score=23.69 Aligned_cols=46 Identities=17% Similarity=0.275 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Q psy2820 31 ENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNK 77 (82)
Q Consensus 31 e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~K 77 (82)
...+++..+.-+++.+++|+.+++...+.|-+ +..+-.||+-+...
T Consensus 9 ~k~~~aa~L~~l~~ql~~l~~~l~~l~~~LP~-~~em~~LL~~i~~~ 54 (147)
T 2rjz_A 9 TKAFQAANLEAYKAQMKEMEESFGALLRQLPS-DTEVPGLLEDITRT 54 (147)
T ss_dssp HTGGGCSSHHHHHHHHHHHHHHHHHHHHTTTG-GGHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCC-hhHHHHHHHHHHHH
Confidence 34456777889999999999999999998874 45677888887443
No 83
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=43.21 E-value=75 Score=22.98 Aligned_cols=56 Identities=21% Similarity=0.233 Sum_probs=39.8
Q ss_pred cCCCHHHHHHHHHHhhh------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy2820 15 RGPNLEMQNQIEVLYTE------------------NEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKL 70 (82)
Q Consensus 15 R~P~~E~q~q~e~l~~e------------------~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKL 70 (82)
++=+.+||+++++.+.- .+.+.++++--.+.|+|+|-.|-+|-+.|.--.-.|+++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556788888776543 234556666666789999999999998887766666654
No 84
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=43.06 E-value=45 Score=21.39 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=22.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 27 VLYTENEHLTREIGILRDTIKELELRIETQK 57 (82)
Q Consensus 27 ~l~~e~er~~rE~~lLr~T~eElE~RietQk 57 (82)
.+....+....++.-|++.+..+|..++..|
T Consensus 86 ~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 86 EWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445566667778888888888888776553
No 85
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=42.13 E-value=56 Score=20.02 Aligned_cols=13 Identities=23% Similarity=0.302 Sum_probs=4.8
Q ss_pred HhhhHHHHHHHHH
Q psy2820 28 LYTENEHLTREIG 40 (82)
Q Consensus 28 l~~e~er~~rE~~ 40 (82)
|+.++..+..++.
T Consensus 57 L~~~~~~l~~~~~ 69 (88)
T 1nkp_A 57 VQAEEQKLISEED 69 (88)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 86
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.01 E-value=49 Score=19.07 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 30 TENEHLTREIGILRDTIKELELRIETQ 56 (82)
Q Consensus 30 ~e~er~~rE~~lLr~T~eElE~RietQ 56 (82)
++.|.+..|+.-|+.-+++|..+++.-
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555443
No 87
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=41.94 E-value=66 Score=20.52 Aligned_cols=47 Identities=21% Similarity=0.308 Sum_probs=39.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHH
Q psy2820 24 QIEVLYTENEHLTREIGILRDTIKELELRIE-----TQKQTLQARDESIKKL 70 (82)
Q Consensus 24 q~e~l~~e~er~~rE~~lLr~T~eElE~Rie-----tQkQTL~aRDESIkKL 70 (82)
.++.|+.|.......+.+-|.-+++-+...+ .+|+|+.+|-.-|.-|
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~l 57 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSAL 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 4677888888888889999999999888875 7999999998877543
No 88
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=41.71 E-value=62 Score=20.12 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy2820 42 LRDTIKELELRIETQKQTLQARDESIKKLLEMLQN 76 (82)
Q Consensus 42 Lr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~ 76 (82)
....++.+...+.+|++.|.+.-..+++.+++|..
T Consensus 9 ~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~ 43 (133)
T 1fxk_C 9 QLNIYQSQVELIQQQMEAVRATISELEILEKTLSD 43 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555566666666666666666666554
No 89
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=41.05 E-value=66 Score=20.30 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=30.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2820 24 QIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQAR 63 (82)
Q Consensus 24 q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aR 63 (82)
.-+.++.+.+.+..|+..|+..|+.|+..+..-++.|..=
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3455677788888999999999998888888877776543
No 90
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=40.36 E-value=1.1e+02 Score=23.03 Aligned_cols=12 Identities=25% Similarity=0.268 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy2820 46 IKELELRIETQK 57 (82)
Q Consensus 46 ~eElE~RietQk 57 (82)
|..|+..+++++
T Consensus 28 i~~L~~~l~~~~ 39 (323)
T 1lwu_C 28 IQELSEMWRVNQ 39 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 91
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=40.30 E-value=61 Score=19.64 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=14.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIK 47 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~e 47 (82)
++++...+..|.+.+.+|+..|+.-++
T Consensus 52 L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 52 LEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555555555443
No 92
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=40.09 E-value=80 Score=20.97 Aligned_cols=35 Identities=17% Similarity=0.043 Sum_probs=13.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIET 55 (82)
Q Consensus 21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Riet 55 (82)
+.++++.+..|...+..|+.-++--+++++..++.
T Consensus 80 L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~ 114 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKE 114 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333333333333333
No 93
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=39.97 E-value=45 Score=21.89 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKE 48 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eE 48 (82)
.+...++.|..|++++.+++..|.--++-
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999888776654
No 94
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=39.25 E-value=49 Score=18.24 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=33.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy2820 26 EVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLL 71 (82)
Q Consensus 26 e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLL 71 (82)
..+..-.+....++..++.-+++.-.+++....+|..=+++|.++=
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k 53 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455556777888888888888888888888888888873
No 95
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=38.42 E-value=71 Score=19.90 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=26.5
Q ss_pred cCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2820 15 RGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELR 52 (82)
Q Consensus 15 R~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~R 52 (82)
-+---.|+++|..|....|.+..++.-+.+--+++=.-
T Consensus 26 q~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 26 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345788888888888888888887766655544333
No 96
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=37.70 E-value=80 Score=20.27 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy2820 40 GILRDTIKELELRIETQKQTL 60 (82)
Q Consensus 40 ~lLr~T~eElE~RietQkQTL 60 (82)
.+|...+++++.+|+.-.+.+
T Consensus 98 ~~l~~~~~~l~~~i~~L~~~~ 118 (148)
T 3gpv_A 98 KLMKQQEANVLQLIQDTEKNL 118 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444433
No 97
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=36.82 E-value=59 Score=21.65 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy2820 18 NLEMQNQIEVLYTENEHLTREIGILRDTIKELEL 51 (82)
Q Consensus 18 ~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~ 51 (82)
++-+|+++....++.+.+..++.-|..+++.||.
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEk 39 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEI 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777888888888888888888887775
No 98
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=36.64 E-value=45 Score=22.61 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILR 43 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr 43 (82)
|+...++.|.+||.++.+|...-+
T Consensus 69 eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 69 ELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555666666666666666665443
No 99
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=36.01 E-value=45 Score=21.68 Aligned_cols=43 Identities=28% Similarity=0.318 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC
Q psy2820 34 HLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGV 79 (82)
Q Consensus 34 r~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~KG~ 79 (82)
.+..|+..+|.|+-+||..= +.-=++=.|-|.+|=--|.+.|.
T Consensus 47 ~Qi~Emq~Ir~tvyeLE~~h---~kmKq~YEeEI~rLr~eLe~r~~ 89 (92)
T 3vp9_A 47 QQLAEMQQIRNTVYERELTH---RKMKDAYEEEIKHLKLGLEQRDH 89 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCC
Confidence 35667777777777777543 33333446777777766766664
No 100
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=35.94 E-value=64 Score=20.08 Aligned_cols=40 Identities=23% Similarity=0.255 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHhcCCC--HHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2820 2 LVRQLEEELRMRLRGPN--LEMQNQIEVLYTENEHLTREIGILR 43 (82)
Q Consensus 2 lvrqleeelr~rmR~P~--~E~q~q~e~l~~e~er~~rE~~lLr 43 (82)
|++|+|-|+|-= .|+ ..+...+....++.+.+.+|+.-++
T Consensus 53 ll~qMelE~r~~--p~~~R~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 53 LLEQMDLEVREI--PPQSRGMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHTTS--CTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhC--CHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466776666532 333 4566677777777777766655443
No 101
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=35.80 E-value=85 Score=19.98 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 18 NLEMQNQIEVLYTENEHLTREIGILRDTIKELELRI 53 (82)
Q Consensus 18 ~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Ri 53 (82)
|..+.++.+.+.+..+-+.+|+.-|+.-..--+.||
T Consensus 36 N~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 36 NNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433334444444444333333333
No 102
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=35.47 E-value=1.4e+02 Score=22.52 Aligned_cols=21 Identities=14% Similarity=0.452 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIG 40 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~ 40 (82)
+++.+++.|+++....+++|.
T Consensus 39 ~~~~~~~~l~~~~n~~sk~i~ 59 (421)
T 1ses_A 39 ELKKRLQEVQTERNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777776654
No 103
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=35.08 E-value=86 Score=19.84 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=31.0
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy2820 10 LRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKEL 49 (82)
Q Consensus 10 lr~rmR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eEl 49 (82)
+.-.+..|..++...++.|..|+..+.+|+.-|+.-+-..
T Consensus 19 ~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 19 ASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp HHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566656999999999999999999998888766554
No 104
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=35.07 E-value=1.2e+02 Score=23.21 Aligned_cols=28 Identities=29% Similarity=0.241 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 32 NEHLTREIGILRDTIKELELRIETQKQT 59 (82)
Q Consensus 32 ~er~~rE~~lLr~T~eElE~RietQkQT 59 (82)
++-+..|+.-+++..++++..++.++..
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~ 32 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAE 32 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 105
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=35.07 E-value=54 Score=18.41 Aligned_cols=25 Identities=12% Similarity=0.261 Sum_probs=19.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTI 46 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~ 46 (82)
...++.|-.++.++..|+.-|++-+
T Consensus 7 EdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 7 EXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3467888888888888888887755
No 106
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=34.90 E-value=55 Score=18.26 Aligned_cols=25 Identities=4% Similarity=0.290 Sum_probs=19.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTI 46 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~ 46 (82)
...++.|-.++.++..|+.-|++-+
T Consensus 6 EdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 6 EXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3467888888888888888887655
No 107
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=34.45 E-value=1.3e+02 Score=22.64 Aligned_cols=35 Identities=11% Similarity=0.087 Sum_probs=17.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 24 QIEVLYTENEHLTREIGILRDTIKELELRIETQKQ 58 (82)
Q Consensus 24 q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQ 58 (82)
++..+.+-.-.+..++..|+..++.++.+|...++
T Consensus 13 ~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~ 47 (323)
T 1lwu_C 13 EVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQ 47 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334445555566666666655555544
No 108
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=34.24 E-value=27 Score=21.58 Aligned_cols=18 Identities=44% Similarity=0.728 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHhhcCC
Q psy2820 62 ARDESIKKLLEMLQNKGV 79 (82)
Q Consensus 62 aRDESIkKLLEmLq~KG~ 79 (82)
--++.|.++|.-|++||+
T Consensus 37 V~kdeV~~~LrrLe~KGL 54 (59)
T 2xvc_A 37 VEKQEVVKLLEALKNKGL 54 (59)
T ss_dssp CCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHCCC
Confidence 345678899999999997
No 109
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=34.12 E-value=8.5 Score=29.12 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARD 64 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRD 64 (82)
.+++.-..|+++++++.+++.--.+.++|...+++..+....++.
T Consensus 352 ~~~~~e~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 396 (418)
T 2qag_C 352 KLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQ 396 (418)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444577888888888777777777777777776666554443
No 110
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=34.00 E-value=95 Score=20.01 Aligned_cols=32 Identities=9% Similarity=0.076 Sum_probs=14.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 23 NQIEVLYTENEHLTREIGILRDTIKELELRIE 54 (82)
Q Consensus 23 ~q~e~l~~e~er~~rE~~lLr~T~eElE~Rie 54 (82)
...+.|....+.+..++.-|...++.++..|+
T Consensus 80 ~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~ 111 (146)
T 3hh0_A 80 VFLRQMHFQREVLLAEQERIAKVLSHMDEMTK 111 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555544444443
No 111
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=33.43 E-value=20 Score=21.44 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=10.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHh
Q psy2820 8 EELRMRLRGPNLEMQNQIEVLY 29 (82)
Q Consensus 8 eelr~rmR~P~~E~q~q~e~l~ 29 (82)
+||..|+++=+++|-++++.+.
T Consensus 13 eEL~~rl~~Ld~~Me~Ei~elr 34 (51)
T 2jo8_A 13 EDLQKRLLALDPMMEQEIEEIR 34 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHH
Confidence 4555555554444444444443
No 112
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=33.29 E-value=66 Score=18.03 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=19.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTI 46 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~ 46 (82)
...++.|-.+++.+..|+.-|+.-+
T Consensus 7 E~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 7 EXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3467888889999988888887654
No 113
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=32.32 E-value=84 Score=20.16 Aligned_cols=13 Identities=38% Similarity=0.491 Sum_probs=5.3
Q ss_pred HHHHHHHHhhhHH
Q psy2820 21 MQNQIEVLYTENE 33 (82)
Q Consensus 21 ~q~q~e~l~~e~e 33 (82)
|-.+++.|-.||.
T Consensus 7 mgkevEnLi~EN~ 19 (77)
T 2w83_C 7 MGREVENLILENT 19 (77)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 3334444444443
No 114
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=31.94 E-value=1e+02 Score=19.81 Aligned_cols=35 Identities=31% Similarity=0.319 Sum_probs=18.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 24 QIEVLYTENEHLTREIGILRDTIKELELRIETQKQ 58 (82)
Q Consensus 24 q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQ 58 (82)
+.+.|.+=.+++..||.--.+.|+++|..|+.-++
T Consensus 38 ekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~ 72 (84)
T 1gmj_A 38 AKEQLAALKKHKENEISHHAKEIERLQKEIERHKQ 72 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443444555666666666666666654433
No 115
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=31.80 E-value=1.7e+02 Score=22.40 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGIL 42 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lL 42 (82)
+++.+++.|+++....+++|..+
T Consensus 42 ~~~~~~~~l~~~~n~~sk~i~~~ 64 (455)
T 2dq0_A 42 TKLKEINRLRHERNKIAVEIGKR 64 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777888887777777653
No 116
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=31.66 E-value=57 Score=20.14 Aligned_cols=38 Identities=13% Similarity=0.272 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHhcCCC---HHHHHHHHHHhhhHHH-HHHHHH
Q psy2820 2 LVRQLEEELRMRLRGPN---LEMQNQIEVLYTENEH-LTREIG 40 (82)
Q Consensus 2 lvrqleeelr~rmR~P~---~E~q~q~e~l~~e~er-~~rE~~ 40 (82)
|++|+|-|+|-=. +|. ..+.+.+..-.++.+. +.+++.
T Consensus 49 ll~qMelE~~~~~-~p~~~R~~~~~klr~Yk~dl~~~lk~~lk 90 (97)
T 3onj_A 49 LLDQMDVEVNNSI-GDASERATYKAKLREWKKTIQSDIKRPLQ 90 (97)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555331 121 2344444444444444 444443
No 117
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.61 E-value=41 Score=25.82 Aligned_cols=37 Identities=24% Similarity=0.470 Sum_probs=24.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQ 58 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQ 58 (82)
.+++..+..|+.++..|+..+++-+++....|..-++
T Consensus 38 e~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~~ 74 (434)
T 4b4t_M 38 DNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQ 74 (434)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3455667778888888888777777777666654433
No 118
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=31.45 E-value=38 Score=24.81 Aligned_cols=20 Identities=35% Similarity=0.313 Sum_probs=13.1
Q ss_pred HHHHHhhhHHHHHHHHHHHH
Q psy2820 24 QIEVLYTENEHLTREIGILR 43 (82)
Q Consensus 24 q~e~l~~e~er~~rE~~lLr 43 (82)
++..|+++|+++.+|+.-|.
T Consensus 162 ~i~~L~a~N~hLqkENeRL~ 181 (186)
T 3q4f_C 162 TIAENQAKNEHLQKENERLL 181 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766543
No 119
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=31.41 E-value=2.3e+02 Score=23.74 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHh----cCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 3 VRQLEEELRMRL----RGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIE 54 (82)
Q Consensus 3 vrqleeelr~rm----R~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Rie 54 (82)
-+|.|||=|.+= +||- +....|+++...|++---+.+.+...|+.
T Consensus 297 kqrqeee~r~~qew~~~hp~-------~~Aer~~e~a~ael~~a~k~~a~~~er~~ 345 (551)
T 2b5u_A 297 KQRQDEENRRQQEWDATHPV-------EAAERNYERARAELNQANEDVARNQERQA 345 (551)
T ss_dssp HHHHHHHHHHHHHHHHHCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788877542 4553 44555566666666655566665555544
No 120
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=31.17 E-value=99 Score=19.36 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2820 46 IKELELRIETQKQTLQARDESIKKLLEML 74 (82)
Q Consensus 46 ~eElE~RietQkQTL~aRDESIkKLLEmL 74 (82)
|..-+.+|+....-|..+|+-|+.|-.-|
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666778888888885443
No 121
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=31.01 E-value=76 Score=17.98 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=21.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTIKE 48 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~eE 48 (82)
...|+.|-.++.++..|+.-|++-+.+
T Consensus 7 E~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 7 KAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 356788888899999998888876654
No 122
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=30.94 E-value=2e+02 Score=22.81 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILR 43 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr 43 (82)
+++.+++.|+++....+++|.-+.
T Consensus 44 ~~~~~~~~l~~~rn~~sk~i~~~k 67 (485)
T 3qne_A 44 KLRFDLDEHNKKLNSVQKEIGKRF 67 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467778888888888888876543
No 123
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=30.84 E-value=64 Score=18.08 Aligned_cols=25 Identities=12% Similarity=0.492 Sum_probs=19.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTI 46 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~ 46 (82)
...++.|-.++.++..|+.-|++-+
T Consensus 7 EdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 7 EDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHh
Confidence 3567888889999999988887654
No 124
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=29.85 E-value=1.3e+02 Score=20.35 Aligned_cols=37 Identities=8% Similarity=0.102 Sum_probs=21.1
Q ss_pred CCHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 17 PNLEMQNQIEV-LYTENEHLTREIGILRDTIKELELRI 53 (82)
Q Consensus 17 P~~E~q~q~e~-l~~e~er~~rE~~lLr~T~eElE~Ri 53 (82)
|..+++++++. +.+-.+-+..-+..++..|.+++.++
T Consensus 29 ~r~~~~~h~~~~~~~h~~~~~~~i~~~~~~i~~~~~~l 66 (228)
T 1flk_A 29 KSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRF 66 (228)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777776665 44444444444555555555555554
No 125
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.95 E-value=1.4e+02 Score=25.00 Aligned_cols=61 Identities=26% Similarity=0.388 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh---h----------HHHHHHHHHHHhhcC
Q psy2820 19 LEMQNQIEVLYTENEHLTREIGILRDT-------IKELELRIETQKQTLQA---R----------DESIKKLLEMLQNKG 78 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~~lLr~T-------~eElE~RietQkQTL~a---R----------DESIkKLLEmLq~KG 78 (82)
-||+.+++.|..+.+.+..=|..||.. |+.||--|+.|.-+-.. | -+.++|.|+-+-++-
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~d 192 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKD 192 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhcc
Confidence 356666666666666666555555554 45567777777655321 1 256777777776654
Q ss_pred C
Q psy2820 79 V 79 (82)
Q Consensus 79 ~ 79 (82)
+
T Consensus 193 L 193 (562)
T 3ghg_A 193 L 193 (562)
T ss_dssp C
T ss_pred c
Confidence 3
No 126
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=28.55 E-value=1.1e+02 Score=21.13 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy2820 43 RDTIKELELRIETQKQTLQARDESIKKL 70 (82)
Q Consensus 43 r~T~eElE~RietQkQTL~aRDESIkKL 70 (82)
.+-++|++-.|.+.+|.|+--.+-+.+|
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erl 97 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERL 97 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555655555555444444433
No 127
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=28.31 E-value=1.4e+02 Score=22.16 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhhHHHH
Q psy2820 3 VRQLEEELRMRLRGPNLEMQNQIEVLYTENEHL 35 (82)
Q Consensus 3 vrqleeelr~rmR~P~~E~q~q~e~l~~e~er~ 35 (82)
.||+|||++-....-+...++-|....+....+
T Consensus 175 ~r~~EEea~~K~eeAd~~Y~~~V~~a~~~r~eL 207 (279)
T 3qwe_A 175 RRRSREEAQAKAQEAEALYQACVREANARQQDL 207 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888888888777777777776665554444
No 128
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=28.25 E-value=83 Score=17.60 Aligned_cols=25 Identities=12% Similarity=0.313 Sum_probs=19.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTI 46 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~ 46 (82)
...+|.|-+++.++..|+.-|++-+
T Consensus 7 EdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 7 EDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4567888999999999988887654
No 129
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=28.14 E-value=1e+02 Score=20.84 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=25.9
Q ss_pred hcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2820 14 LRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQA 62 (82)
Q Consensus 14 mR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~a 62 (82)
+--|+.+.|+++-......+. .+..+.+..++....++..||.|..
T Consensus 360 I~lP~l~eQ~~I~~~l~~~d~---~i~~l~~~~~~~~~~L~~lk~~LL~ 405 (412)
T 3okg_A 360 IPLPPLEEQRRIVAYLDQIQQ---QVAALKRAQAETEAELKRLEQAILD 405 (412)
T ss_dssp EEECCHHHHHHHHHHHHHHHH---HHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888887766554333 3333443333444555666665543
No 130
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=27.91 E-value=51 Score=19.30 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 32 NEHLTREIGILRDTIKELELRIETQ 56 (82)
Q Consensus 32 ~er~~rE~~lLr~T~eElE~RietQ 56 (82)
..+--.|+..|..-++||+..|+.|
T Consensus 22 ~~rRfdEV~~L~~NL~EL~~E~~~~ 46 (48)
T 3v1a_A 22 AAGRMDEVRTLQENLHQLMHEYFQQ 46 (48)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhcChHHHHHHHHHHHHHHHHHHhh
Confidence 3445569999999999999999876
No 131
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=27.23 E-value=86 Score=17.39 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 39 IGILRDTIKELELRIETQKQTLQ 61 (82)
Q Consensus 39 ~~lLr~T~eElE~RietQkQTL~ 61 (82)
+.-|...+.++..|++.=..|.+
T Consensus 8 ~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 8 VRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444333433
No 132
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=27.06 E-value=83 Score=18.54 Aligned_cols=38 Identities=16% Similarity=0.303 Sum_probs=28.0
Q ss_pred HHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYT-----ENEHLTREIGILRDTIKELELRIETQK 57 (82)
Q Consensus 20 E~q~q~e~l~~-----e~er~~rE~~lLr~T~eElE~RietQk 57 (82)
-|.+|+.-+.+ -..+--.|+..|..-++||+.+|+.|.
T Consensus 6 PL~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 6 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 45566655533 344455699999999999999999875
No 133
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=27.02 E-value=1.4e+02 Score=19.60 Aligned_cols=21 Identities=10% Similarity=0.314 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy2820 35 LTREIGILRDTIKELELRIET 55 (82)
Q Consensus 35 ~~rE~~lLr~T~eElE~Riet 55 (82)
+.+-+......|.+||.|++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~ 32 (192)
T 2gkw_A 12 HDQMLSVHDIRLADMDLRFQV 32 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555544
No 134
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=26.74 E-value=1.7e+02 Score=22.10 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGI 41 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~l 41 (82)
+++.+++.|+++....+++|..
T Consensus 41 ~~~~~~~~l~~~~n~~sk~i~~ 62 (425)
T 2dq3_A 41 EIIKRLEALRSERNKLSKEIGK 62 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777754
No 135
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=26.67 E-value=1.8e+02 Score=23.33 Aligned_cols=17 Identities=35% Similarity=0.051 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhhHH
Q psy2820 49 LELRIETQKQTLQARDE 65 (82)
Q Consensus 49 lE~RietQkQTL~aRDE 65 (82)
+|.--+-|||.+++++-
T Consensus 178 ~e~ye~qqKQL~qv~a~ 194 (390)
T 1deq_A 178 LEDYKNQQKQLEQVIAI 194 (390)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 33444567777777553
No 136
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=26.63 E-value=90 Score=17.45 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=20.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTI 46 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~ 46 (82)
...++.|-+++.+++.|+.-|++-+
T Consensus 7 edKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 7 ADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4567888899999999998887755
No 137
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=25.91 E-value=57 Score=19.90 Aligned_cols=38 Identities=21% Similarity=0.353 Sum_probs=27.9
Q ss_pred HHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 21 MQNQIEVLY-----TENEHLTREIGILRDTIKELELRIETQKQ 58 (82)
Q Consensus 21 ~q~q~e~l~-----~e~er~~rE~~lLr~T~eElE~RietQkQ 58 (82)
|-+|+.-+. |-..+--.|+..|..-++||+.+|..|+.
T Consensus 14 L~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~~~~~ 56 (59)
T 1z0j_B 14 LLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQKG 56 (59)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 455655543 33444556999999999999999998864
No 138
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=24.76 E-value=2.7e+02 Score=22.25 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=29.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 24 QIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQ 61 (82)
Q Consensus 24 q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~ 61 (82)
+++.-++..+-..+|..+|....+++|..+++|+.+.+
T Consensus 488 ~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 525 (592)
T 1f5n_A 488 EIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQ 525 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666677888999999999999999988765
No 139
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=24.41 E-value=1.2e+02 Score=22.60 Aligned_cols=14 Identities=43% Similarity=0.491 Sum_probs=5.6
Q ss_pred hhHHHHHHHHHHHH
Q psy2820 30 TENEHLTREIGILR 43 (82)
Q Consensus 30 ~e~er~~rE~~lLr 43 (82)
.||+.+..+|.-+.
T Consensus 115 eEN~~Lh~~ie~l~ 128 (209)
T 2wvr_A 115 KENEKLHKEIEQKD 128 (209)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444433333
No 140
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=23.93 E-value=96 Score=16.88 Aligned_cols=18 Identities=39% Similarity=0.534 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy2820 46 IKELELRIETQKQTLQAR 63 (82)
Q Consensus 46 ~eElE~RietQkQTL~aR 63 (82)
++=|-..||.|+|-++-+
T Consensus 8 m~lLKKKIEEQr~i~~~~ 25 (29)
T 3lcn_C 8 MKLLKKKIEEQREILQKT 25 (29)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344455678899888754
No 141
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=23.63 E-value=35 Score=17.42 Aligned_cols=14 Identities=21% Similarity=0.691 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhcCC
Q psy2820 66 SIKKLLEMLQNKGV 79 (82)
Q Consensus 66 SIkKLLEmLq~KG~ 79 (82)
+.+.+++-|...|+
T Consensus 15 ~~k~l~~~l~~~g~ 28 (49)
T 1nd9_A 15 SVERLVQQFADAGI 28 (49)
T ss_dssp SHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHcCC
Confidence 46778888888887
No 142
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=23.62 E-value=1.4e+02 Score=18.44 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=25.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 24 QIEVLYTENEHLTREIGILRDTIKELELRIETQKQTL 60 (82)
Q Consensus 24 q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL 60 (82)
..+.+....+.+..|+..|+..|..|+..+..=++.|
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777888888888887777666555443
No 143
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=23.55 E-value=2.2e+02 Score=20.87 Aligned_cols=46 Identities=11% Similarity=0.210 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy2820 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDE 65 (82)
Q Consensus 20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDE 65 (82)
-+|.-+.++.++...+.+++.--+.-++.++..++.=.++..-|++
T Consensus 306 ~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~ 351 (406)
T 4dyl_A 306 SVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRER 351 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchH
Confidence 3566677777777777777777777777777777666565555554
No 144
>3b21_A ORF169B, OSPI; bacterial protein, effector, type 3 secretion SYST unknown function; 2.01A {Shigella flexneri}
Probab=23.45 E-value=40 Score=25.01 Aligned_cols=15 Identities=53% Similarity=0.849 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhcCCC
Q psy2820 66 SIKKLLEMLQNKGVG 80 (82)
Q Consensus 66 SIkKLLEmLq~KG~~ 80 (82)
.+|||||-|.||.+|
T Consensus 31 nvkklleslnskslg 45 (220)
T 3b21_A 31 NVKKLLESLNSKSLG 45 (220)
T ss_dssp CHHHHHHHHHTSSCC
T ss_pred cHHHHHHHhcccccc
Confidence 489999999999887
No 145
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=23.39 E-value=49 Score=23.46 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=14.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHH
Q psy2820 25 IEVLYTENEHLTREIGILRDTIKEL 49 (82)
Q Consensus 25 ~e~l~~e~er~~rE~~lLr~T~eEl 49 (82)
...++.||+++.+|+..|+..+.++
T Consensus 21 ~~~l~~eN~~Lk~e~~~l~~~~~~~ 45 (255)
T 2j5u_A 21 LKNTYTENQHLKERLEELAQLESEV 45 (255)
T ss_dssp -----CTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888776554433
No 146
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=23.28 E-value=2.4e+02 Score=21.86 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy2820 45 TIKELELRIETQKQTL 60 (82)
Q Consensus 45 T~eElE~RietQkQTL 60 (82)
.|..|+..++++.+.+
T Consensus 106 ~i~~l~~~~~~~~~~i 121 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKI 121 (409)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHH
Confidence 3444444444443333
No 147
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=23.22 E-value=92 Score=16.84 Aligned_cols=9 Identities=0% Similarity=-0.038 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy2820 45 TIKELELRI 53 (82)
Q Consensus 45 T~eElE~Ri 53 (82)
.+..||..+
T Consensus 52 ri~~Le~~l 60 (70)
T 1zme_C 52 DLNDKTEEN 60 (70)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 148
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.06 E-value=1.4e+02 Score=18.23 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=8.1
Q ss_pred HHHHHhhHHHHHHHHHHHh
Q psy2820 57 KQTLQARDESIKKLLEMLQ 75 (82)
Q Consensus 57 kQTL~aRDESIkKLLEmLq 75 (82)
+..|..+-...++=|+.|+
T Consensus 68 ~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 68 EDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444443
No 149
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=23.01 E-value=77 Score=23.15 Aligned_cols=21 Identities=43% Similarity=0.401 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHH
Q psy2820 19 LEMQNQIEVLYTENEHLTREI 39 (82)
Q Consensus 19 ~E~q~q~e~l~~e~er~~rE~ 39 (82)
.+++...+.|+.||+|+.+|-
T Consensus 164 ~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 164 AENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 578888899999999999874
No 150
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=22.80 E-value=1.1e+02 Score=17.04 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=19.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2820 22 QNQIEVLYTENEHLTREIGILRDTI 46 (82)
Q Consensus 22 q~q~e~l~~e~er~~rE~~lLr~T~ 46 (82)
...++.|-+++.++..|+.-|++-+
T Consensus 6 EdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 6 EDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3467888888888888888877654
No 151
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.80 E-value=1.4e+02 Score=17.85 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=23.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 24 QIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQ 61 (82)
Q Consensus 24 q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~ 61 (82)
-++...++...+..++.-|+..+.+++..++.-.+.+.
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666777777776666665555444
No 152
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.66 E-value=1e+02 Score=16.43 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=10.3
Q ss_pred HHHhhhHHHHHHHHHHHHHH
Q psy2820 26 EVLYTENEHLTREIGILRDT 45 (82)
Q Consensus 26 e~l~~e~er~~rE~~lLr~T 45 (82)
+.||.|.+.++.-+.-||+.
T Consensus 4 delykeledlqerlrklrkk 23 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544444443
No 153
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.64 E-value=69 Score=18.63 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=15.4
Q ss_pred HhhHHHHHHHHHHHhhcCC
Q psy2820 61 QARDESIKKLLEMLQNKGV 79 (82)
Q Consensus 61 ~aRDESIkKLLEmLq~KG~ 79 (82)
.++-+-..+||..|..||-
T Consensus 49 ~t~~~kar~Lld~l~~kG~ 67 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDN 67 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCH
T ss_pred CChHHHHHHHHHHHHHcCH
Confidence 3567778999999999984
No 154
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=20.70 E-value=1.1e+02 Score=18.97 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=27.7
Q ss_pred HHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820 20 EMQNQIEVLY-----TENEHLTREIGILRDTIKELELRIETQK 57 (82)
Q Consensus 20 E~q~q~e~l~-----~e~er~~rE~~lLr~T~eElE~RietQk 57 (82)
-|-+|+.-+. |-.++--.|+..|..-++||+.+|+.|.
T Consensus 24 PL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 24 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 4556665553 3344455699999999999999998874
No 155
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=20.45 E-value=22 Score=23.28 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHh--cCC------CHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy2820 2 LVRQLEEELRMRL--RGP------NLEMQNQIEVLYTENEHLTREIG-ILRDTIKELELRIETQKQTL 60 (82)
Q Consensus 2 lvrqleeelr~rm--R~P------~~E~q~q~e~l~~e~er~~rE~~-lLr~T~eElE~RietQkQTL 60 (82)
.|++||++|-..+ |.+ .+.+...=+.++....+...++. ++.+.++++...+..++.++
T Consensus 58 ~I~~LE~~lG~~Lf~R~~~G~~grg~~LT~~G~~ll~~a~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (135)
T 2ijl_A 58 LVDALNHMFRQPVICSQRGGKQGGGAALTVFGAELLERYRGMEERMNEALREDIDWLEANRNPQDALN 125 (135)
T ss_dssp HHHHHHHHBSSCSEEECCC------EEECHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHBCCC----
T ss_pred HHHHHHHHHCCeeEEecCCCCCCCceeECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCce
Confidence 3688999876655 665 57777777777777766666653 34555666655555555554
No 156
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=20.24 E-value=2.2e+02 Score=19.56 Aligned_cols=11 Identities=45% Similarity=0.576 Sum_probs=8.0
Q ss_pred HHHHHHHHHHH
Q psy2820 3 VRQLEEELRMR 13 (82)
Q Consensus 3 vrqleeelr~r 13 (82)
++.||++||.=
T Consensus 44 ~~eLEeeL~~v 54 (155)
T 2efr_A 44 SAELEEELKTV 54 (155)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56788888853
No 157
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.08 E-value=2.4e+02 Score=21.63 Aligned_cols=28 Identities=36% Similarity=0.521 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhcC
Q psy2820 51 LRIETQKQTLQARDESIKKLLEMLQNKG 78 (82)
Q Consensus 51 ~RietQkQTL~aRDESIkKLLEmLq~KG 78 (82)
.+++.|+..|..+...++.=+..||+-|
T Consensus 42 ~~l~~~~~~l~~~~~~~~~e~~~l~~~~ 69 (405)
T 4b4t_J 42 RRLEAQRNALNDKVRFIKDELRLLQEPG 69 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4677888888877777777777777754
Done!