RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2820
(82 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 6e-05
Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 40/111 (36%)
Query: 6 LEEELRMRLRGPNLEMQN---QIEVLYTENE-----HLTRE--IGILRDTIKEL--ELRI 53
L ++ R P++ + Q + LY +N+ +++R LR + EL +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 54 ETQ------KQTLQA---RDESIKK-------------------LLEMLQN 76
K + ++ +LEMLQ
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 31.6 bits (72), Expect = 0.013
Identities = 14/73 (19%), Positives = 35/73 (47%)
Query: 5 QLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARD 64
++E R + ++ ++N+I L + + +E L + + LE+ T+ + L++
Sbjct: 910 KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV 969
Query: 65 ESIKKLLEMLQNK 77
E ++ E +N
Sbjct: 970 ERLRMSEEEAKNA 982
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.014
Identities = 5/26 (19%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 3 VRQLEEELRMRL--RGPNLEMQNQIE 26
+++L+ L++ P L ++ +E
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47
Score = 30.3 bits (67), Expect = 0.037
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 9/34 (26%)
Query: 43 RDTIKELELRIETQKQTLQARDE----SIKKLLE 72
+ +K+L+ ++ L A D +IK +E
Sbjct: 19 KQALKKLQASLK-----LYADDSAPALAIKATME 47
Score = 26.8 bits (58), Expect = 0.71
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 14/27 (51%)
Query: 56 QKQTLQARDESIKKLLEMLQNKGVGLK 82
+KQ ++KKL Q LK
Sbjct: 18 EKQ-------ALKKL----QAS---LK 30
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C
3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C*
2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Length = 319
Score = 30.2 bits (68), Expect = 0.045
Identities = 6/50 (12%), Positives = 16/50 (32%)
Query: 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKK 69
+M +I I L++ +I K+ + + ++
Sbjct: 1 KMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 50
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 29.8 bits (67), Expect = 0.073
Identities = 14/71 (19%), Positives = 28/71 (39%)
Query: 5 QLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARD 64
+ EE R +L+ + +I+ + + + + L K LE R+ L +
Sbjct: 965 EEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE 1024
Query: 65 ESIKKLLEMLQ 75
E K L ++
Sbjct: 1025 EKAKNLTKLKN 1035
Score = 28.6 bits (64), Expect = 0.19
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 4 RQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQAR 63
++LEE L EM+ +IE ++ L E ++ + +LE ++E ++ Q
Sbjct: 923 QELEEILH--------EMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL 974
Query: 64 DESIKKLLEMLQN 76
++
Sbjct: 975 QLEKVTADGKIKK 987
Score = 28.3 bits (63), Expect = 0.24
Identities = 10/76 (13%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 2 LVRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQ 61
+++R L ++Q +E ++ L + ++ L+ +E T
Sbjct: 1110 QKNNALKKIR-ELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTA 1168
Query: 62 ARDESIKKLLEMLQNK 77
+ E + +K
Sbjct: 1169 TQQELRGSDYKDDDDK 1184
Score = 26.0 bits (57), Expect = 1.5
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 3 VRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQA 62
+QL+ E + +++ L+++ Q+E + L E IK++E I +
Sbjct: 943 SQQLQAEKK-KMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001
Query: 63 RDESIKKLLEMLQN 76
+ K L E + +
Sbjct: 1002 LTKERKLLEERVSD 1015
Score = 24.8 bits (54), Expect = 4.2
Identities = 10/53 (18%), Positives = 27/53 (50%)
Query: 20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLE 72
++ + + ++LT+ I ELE+R++ ++++ Q ++ +KL
Sbjct: 1015 DLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEG 1067
Score = 24.4 bits (53), Expect = 4.9
Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 3 VRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQA 62
+ +L+ +L + + +++ E T + I+ELE I ++ L++
Sbjct: 1083 IAELKAQLA--------KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLES 1134
Query: 63 RDESIKKL 70
+ K
Sbjct: 1135 EKAARNKA 1142
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1
(PAPS synthetase...; NMP-kinase fold, protein in complex
with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens}
PDB: 2pey_A* 2ax4_A*
Length = 179
Score = 29.0 bits (66), Expect = 0.10
Identities = 6/30 (20%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 50 ELRIETQKQTLQARDESIKKLLEMLQNKGV 79
EL ++T + ++ +++++E+LQ + +
Sbjct: 152 ELVLKTDSCDV---NDCVQQVVELLQERDI 178
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 28.8 bits (65), Expect = 0.16
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 23 NQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQ 75
++I L + L +I L++ IK+ EL ++ + L + + L LQ
Sbjct: 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQ 55
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 28.4 bits (64), Expect = 0.18
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQ 75
M + L TE HL + L ++ +ET K+ L + K+L +
Sbjct: 1 MGSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVM 55
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met
nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A
{Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A*
1m7h_A* 3cr7_A*
Length = 211
Score = 28.4 bits (64), Expect = 0.21
Identities = 5/30 (16%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 50 ELRIETQKQTLQARDESIKKLLEMLQNKGV 79
E+ ++ + + +++K++++ L KG
Sbjct: 179 EVHVKNYELPV---QDAVKQIIDYLDTKGY 205
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold,
transferase-transferase complex; HET: ADX ANP; 1.79A
{Arabidopsis thaliana} PDB: 4fxp_A*
Length = 200
Score = 24.9 bits (55), Expect = 2.8
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 50 ELRIETQKQTLQARDESIKKLLEMLQNKGV 79
E+ + + T + E +K++ L NKG
Sbjct: 170 EISLGREGGT--SPIEMAEKVVGYLDNKGY 197
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell
shape regulation; 2.5A {Listeria monocytogenes}
Length = 255
Score = 25.1 bits (55), Expect = 2.8
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 28 LYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQN 76
YTEN+HL + L E+ L+ ++ +K+ L++ +
Sbjct: 24 TYTENQHLKERLEELAQLESEVA--------DLKKENKDLKESLDITDS 64
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase,
transferase, sulfate metabolism, nucleotide 2 kinase;
2.95A {Thiobacillus denitrificans}
Length = 552
Score = 25.3 bits (55), Expect = 3.0
Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 50 ELRIETQKQTLQARDESIKKLLEMLQNKGV 79
EL I+T + DE+++++L L+++G
Sbjct: 516 ELAIDTTGLAI---DEAVQQILLKLEHEGY 542
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.1 bits (54), Expect = 3.0
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 54 ETQKQTLQARDESIKKLLEMLQNKG 78
E Q++ LQ D + K + + + K
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKA 116
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics,
NPPSFA, national P protein structural and functional
analyses; 2.10A {Aeropyrum pernix}
Length = 186
Score = 24.8 bits (55), Expect = 3.4
Identities = 4/28 (14%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 50 ELRIETQKQTLQARDESIKKLLEMLQNK 77
+L ++T+ T+ + ++ L +++
Sbjct: 160 QLVLDTESNTI---EHNVSYLYSLVKAV 184
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 24.9 bits (55), Expect = 3.7
Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Query: 11 RMRLRGPNL-----EMQNQIEVLYTENEHLTRE-----IGILRDTIKELELRIETQKQTL 60
++RLR E++ +++ + E + + LRDT + L ++E K++
Sbjct: 384 KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSW 443
Query: 61 QARDESIK 68
+ +
Sbjct: 444 KEKQGQEN 451
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 24.5 bits (54), Expect = 4.7
Identities = 12/68 (17%), Positives = 30/68 (44%), Gaps = 10/68 (14%)
Query: 11 RMRLRGPNL-----EMQNQIEVLYTENEHLTR-----EIGILRDTIKELELRIETQKQTL 60
++RLR E++ +++ + E + + + LRDT + L ++E K++
Sbjct: 384 KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSW 443
Query: 61 QARDESIK 68
+ +
Sbjct: 444 KEKQGQEN 451
>3mzk_B Protein transport protein SEC16; alpha-helical-stack,
beta-propeller; 2.69A {Saccharomyces cerevisiae}
Length = 441
Score = 24.0 bits (51), Expect = 7.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 44 DTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGLK 82
D K +E I++ + + D +I +LLEM N V K
Sbjct: 79 DLTKWMETTIKSISENESSTDMTIWQLLEMKLNDKVNWK 117
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural
genomics, nysgxrc; HET: MSE; 1.90A {Bacillus
halodurans}
Length = 233
Score = 23.8 bits (52), Expect = 7.3
Identities = 5/43 (11%), Positives = 13/43 (30%), Gaps = 6/43 (13%)
Query: 32 NEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEML 74
+ + + ++ E +Q + D + L L
Sbjct: 13 EKQIPARDQYIE------QMEREAHEQQVPIMDLLGMESLLHL 49
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.345
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,164,155
Number of extensions: 61265
Number of successful extensions: 351
Number of sequences better than 10.0: 1
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 124
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)