RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2820
         (82 letters)



>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
           kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
          Length = 208

 Score = 26.7 bits (58), Expect = 0.31
 Identities = 6/41 (14%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 39  IGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGV 79
           I    +     E+ ++  +  +    +++K++++ L  KG 
Sbjct: 167 ISAPYEAPANPEVHVKNYELPV---QDAVKQIIDYLDTKGY 204


>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
           yoelii yoelii [TaxId: 73239]}
          Length = 404

 Score = 24.0 bits (51), Expect = 2.9
 Identities = 6/23 (26%), Positives = 9/23 (39%)

Query: 28  LYTENEHLTREIGILRDTIKELE 50
           L    E L     I+  T+K  +
Sbjct: 382 LCITKEQLDECTEIIVKTVKFFD 404


>d1z7me1 c.94.1.1 (E:1-204) ATP phosphoribosyltransferase
           (ATP-PRTase, HisG), catalytic domain {Lactococcus lactis
           [TaxId: 1358]}
          Length = 204

 Score = 22.6 bits (48), Expect = 6.9
 Identities = 6/33 (18%), Positives = 19/33 (57%)

Query: 44  DTIKELELRIETQKQTLQARDESIKKLLEMLQN 76
           + I ++  R+   K + + + + I +++E L++
Sbjct: 172 EKISDISTRMIVNKSSFKFKKDKIIEMVERLED 204


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.135    0.345 

Gapped
Lambda     K      H
   0.267   0.0456    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 273,993
Number of extensions: 11481
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 16
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.6 bits)