Query psy2822
Match_columns 78
No_of_seqs 25 out of 27
Neff 2.6
Searched_HMMs 46136
Date Fri Aug 16 17:48:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10174 Cast: RIM-binding pro 99.6 9.4E-15 2E-19 123.4 8.0 65 1-65 345-409 (775)
2 PRK11637 AmiB activator; Provi 91.8 2 4.4E-05 33.4 8.8 49 3-51 44-92 (428)
3 PRK11637 AmiB activator; Provi 91.5 2.4 5.3E-05 33.0 9.0 62 2-63 50-111 (428)
4 PF05529 Bap31: B-cell recepto 90.3 2.3 5.1E-05 29.7 7.3 57 7-63 129-190 (192)
5 PF08317 Spc7: Spc7 kinetochor 89.7 3 6.6E-05 31.8 8.0 61 2-62 226-290 (325)
6 PF15619 Lebercilin: Ciliary p 88.8 5 0.00011 29.4 8.3 58 6-63 89-154 (194)
7 smart00787 Spc7 Spc7 kinetocho 85.0 7.2 0.00016 30.4 7.8 62 2-63 221-286 (312)
8 PF05266 DUF724: Protein of un 83.6 15 0.00032 26.8 9.2 60 1-64 88-147 (190)
9 PF08614 ATG16: Autophagy prot 83.4 6.5 0.00014 27.8 6.4 56 6-61 102-157 (194)
10 PRK10722 hypothetical protein; 80.2 8.3 0.00018 30.2 6.5 43 20-62 155-204 (247)
11 PRK10803 tol-pal system protei 76.7 21 0.00046 26.7 7.5 52 4-55 38-89 (263)
12 PF08317 Spc7: Spc7 kinetochor 71.3 39 0.00084 25.8 7.9 34 4-37 214-247 (325)
13 PHA02562 46 endonuclease subun 71.2 48 0.001 25.9 10.0 61 3-63 334-394 (562)
14 PF12777 MT: Microtubule-bindi 71.0 28 0.0006 26.7 7.1 59 1-59 17-75 (344)
15 PF12777 MT: Microtubule-bindi 68.8 28 0.0006 26.7 6.7 58 5-62 234-291 (344)
16 PF05667 DUF812: Protein of un 67.9 28 0.00061 29.6 7.1 60 1-60 337-396 (594)
17 TIGR02169 SMC_prok_A chromosom 67.6 68 0.0015 26.9 9.1 10 49-58 449-458 (1164)
18 smart00787 Spc7 Spc7 kinetocho 66.3 49 0.0011 25.8 7.7 63 3-65 172-235 (312)
19 COG1196 Smc Chromosome segrega 63.8 81 0.0018 28.1 9.3 62 2-63 270-331 (1163)
20 PF13870 DUF4201: Domain of un 63.8 46 0.00099 23.0 9.0 61 2-62 94-166 (177)
21 PF00038 Filament: Intermediat 63.6 36 0.00079 24.8 6.2 37 26-62 95-131 (312)
22 PF07106 TBPIP: Tat binding pr 60.3 52 0.0011 22.5 7.7 50 13-62 79-130 (169)
23 TIGR02169 SMC_prok_A chromosom 59.9 95 0.0021 26.0 8.6 24 34-57 882-905 (1164)
24 PF14197 Cep57_CLD_2: Centroso 59.3 24 0.00052 22.2 4.1 24 32-55 3-26 (69)
25 COG1340 Uncharacterized archae 56.3 1E+02 0.0022 24.6 8.5 61 2-62 37-97 (294)
26 KOG4673|consensus 55.4 68 0.0015 29.5 7.5 58 3-67 478-535 (961)
27 PF04977 DivIC: Septum formati 54.3 42 0.00091 19.5 4.9 33 7-39 18-50 (80)
28 PRK01156 chromosome segregatio 54.0 1.2E+02 0.0026 25.7 8.4 52 9-60 677-728 (895)
29 PRK09039 hypothetical protein; 53.5 48 0.001 25.9 5.7 44 19-62 45-88 (343)
30 TIGR03185 DNA_S_dndD DNA sulfu 52.7 1.3E+02 0.0029 24.9 9.6 46 20-65 421-466 (650)
31 PF14197 Cep57_CLD_2: Centroso 50.8 60 0.0013 20.3 7.6 39 1-39 7-45 (69)
32 PHA02562 46 endonuclease subun 50.3 1.2E+02 0.0026 23.7 8.5 58 6-63 309-373 (562)
33 PF06810 Phage_GP20: Phage min 50.0 88 0.0019 22.0 7.1 51 4-66 18-69 (155)
34 cd00632 Prefoldin_beta Prefold 49.6 68 0.0015 20.5 5.7 38 24-61 67-104 (105)
35 PF12072 DUF3552: Domain of un 49.1 96 0.0021 22.2 7.4 50 3-52 82-131 (201)
36 COG4026 Uncharacterized protei 49.0 76 0.0017 25.5 6.2 28 3-30 153-180 (290)
37 PF11570 E2R135: Coiled-coil r 48.9 53 0.0011 24.0 4.9 42 11-52 82-125 (136)
38 PHA01750 hypothetical protein 48.1 65 0.0014 21.4 4.9 35 29-63 37-71 (75)
39 COG4985 ABC-type phosphate tra 47.6 40 0.00086 27.2 4.5 40 5-44 197-238 (289)
40 PF15397 DUF4618: Domain of un 46.7 1.4E+02 0.003 23.3 8.3 61 2-62 66-134 (258)
41 PF09738 DUF2051: Double stran 45.8 1.5E+02 0.0032 23.4 7.7 58 3-60 81-138 (302)
42 PRK02224 chromosome segregatio 45.1 1.9E+02 0.004 24.3 8.9 40 22-61 511-550 (880)
43 TIGR00219 mreC rod shape-deter 42.9 75 0.0016 24.1 5.2 42 7-48 70-112 (283)
44 PRK13922 rod shape-determining 42.3 85 0.0019 22.9 5.2 41 7-47 73-113 (276)
45 PRK04863 mukB cell division pr 41.9 1.9E+02 0.0042 27.5 8.4 61 2-62 358-418 (1486)
46 COG1792 MreC Cell shape-determ 41.6 78 0.0017 24.2 5.1 44 6-49 69-112 (284)
47 PF06632 XRCC4: DNA double-str 40.8 1.9E+02 0.0041 23.2 7.7 54 7-63 141-209 (342)
48 PF14282 FlxA: FlxA-like prote 40.5 1.1E+02 0.0023 20.2 5.8 44 19-62 18-65 (106)
49 KOG4603|consensus 40.0 93 0.002 24.0 5.3 47 8-62 84-130 (201)
50 PF10146 zf-C4H2: Zinc finger- 39.6 1.6E+02 0.0036 22.2 7.7 40 21-60 54-93 (230)
51 PRK09039 hypothetical protein; 39.5 1.8E+02 0.004 22.7 7.8 42 19-60 143-184 (343)
52 PF13851 GAS: Growth-arrest sp 39.0 1.5E+02 0.0033 21.5 6.3 34 2-35 135-168 (201)
53 KOG4010|consensus 38.9 93 0.002 24.1 5.2 34 24-57 48-81 (208)
54 PF04201 TPD52: Tumour protein 38.4 78 0.0017 23.4 4.5 34 24-57 33-66 (162)
55 PF10779 XhlA: Haemolysin XhlA 38.4 93 0.002 18.9 5.2 38 25-62 4-41 (71)
56 PF08663 HalX: HalX domain; I 36.8 74 0.0016 20.1 3.7 38 7-44 15-53 (71)
57 KOG0161|consensus 36.8 1.9E+02 0.0041 28.6 7.8 56 8-63 1275-1330(1930)
58 PF02185 HR1: Hr1 repeat; Int 36.7 95 0.0021 18.5 6.4 57 2-62 4-61 (70)
59 COG2919 Septum formation initi 35.9 79 0.0017 21.1 3.9 31 12-42 56-86 (117)
60 PF00170 bZIP_1: bZIP transcri 35.9 93 0.002 18.2 6.7 31 14-44 20-50 (64)
61 COG4942 Membrane-bound metallo 35.5 2.7E+02 0.0058 23.4 9.2 62 3-64 42-110 (420)
62 PF13942 Lipoprotein_20: YfhG 34.1 2.1E+02 0.0045 21.7 6.5 41 21-61 110-157 (179)
63 KOG3990|consensus 34.0 75 0.0016 25.8 4.2 53 3-62 236-288 (305)
64 PRK01203 prefoldin subunit alp 33.9 1.4E+02 0.003 21.1 5.0 37 1-39 89-125 (130)
65 KOG2264|consensus 33.7 1.8E+02 0.0038 26.6 6.6 46 8-60 81-126 (907)
66 KOG3335|consensus 33.3 42 0.0009 25.4 2.5 24 3-26 110-133 (181)
67 KOG4001|consensus 32.3 1.1E+02 0.0023 24.4 4.7 39 21-59 179-217 (259)
68 PRK12704 phosphodiesterase; Pr 32.1 3E+02 0.0065 22.9 8.0 17 8-24 91-107 (520)
69 PF03148 Tektin: Tektin family 32.0 2.6E+02 0.0055 22.1 7.9 58 2-59 247-304 (384)
70 PF02388 FemAB: FemAB family; 31.7 2.6E+02 0.0056 22.0 6.8 43 22-64 244-289 (406)
71 PRK02224 chromosome segregatio 31.7 3.1E+02 0.0068 23.0 8.4 61 4-64 514-588 (880)
72 PRK05560 DNA gyrase subunit A; 31.4 1.4E+02 0.0031 26.0 5.7 41 23-63 433-473 (805)
73 KOG0161|consensus 31.2 3.1E+02 0.0068 27.2 8.2 60 3-62 1080-1139(1930)
74 PF04420 CHD5: CHD5-like prote 31.2 1.8E+02 0.004 20.2 5.5 51 17-67 37-92 (161)
75 TIGR00606 rad50 rad50. This fa 31.1 4.1E+02 0.0088 24.2 8.5 54 9-62 987-1042(1311)
76 KOG0250|consensus 30.8 3.9E+02 0.0084 25.3 8.4 42 22-63 417-458 (1074)
77 PTZ00421 coronin; Provisional 30.7 1.7E+02 0.0037 23.9 5.7 45 13-57 446-490 (493)
78 PRK04863 mukB cell division pr 30.6 3.4E+02 0.0073 26.0 8.2 59 1-59 987-1045(1486)
79 cd07666 BAR_SNX7 The Bin/Amphi 30.0 2.5E+02 0.0055 21.4 6.8 46 5-51 156-201 (243)
80 PF04111 APG6: Autophagy prote 29.5 2.7E+02 0.0058 21.6 8.0 24 19-42 63-86 (314)
81 PF07106 TBPIP: Tat binding pr 29.0 1.9E+02 0.0042 19.7 7.2 57 6-62 79-137 (169)
82 PF12718 Tropomyosin_1: Tropom 28.6 2E+02 0.0044 19.9 8.2 41 6-46 28-68 (143)
83 COG2433 Uncharacterized conser 28.6 4.3E+02 0.0094 23.7 9.4 41 24-64 447-490 (652)
84 PHA00489 scaffolding protein 28.1 2.1E+02 0.0046 20.0 5.1 37 8-44 5-51 (101)
85 PRK00106 hypothetical protein; 27.7 3.9E+02 0.0084 22.8 7.6 53 7-59 105-157 (535)
86 PRK03918 chromosome segregatio 27.7 3.6E+02 0.0079 22.5 9.0 6 34-39 214-219 (880)
87 PRK00888 ftsB cell division pr 27.3 1.9E+02 0.0041 19.1 5.3 36 7-42 28-63 (105)
88 PF08614 ATG16: Autophagy prot 26.8 2.3E+02 0.005 19.9 7.1 50 4-60 128-177 (194)
89 PF07246 Phlebovirus_NSM: Phle 26.7 93 0.002 24.6 3.5 17 8-24 150-166 (264)
90 PF10473 CENP-F_leu_zip: Leuci 26.7 2.4E+02 0.0051 20.0 7.3 41 20-60 59-99 (140)
91 KOG0804|consensus 26.5 4.3E+02 0.0093 22.9 7.8 53 13-65 347-399 (493)
92 KOG0728|consensus 26.5 2E+02 0.0043 24.1 5.5 38 6-43 24-61 (404)
93 PF08287 DASH_Spc19: Spc19; I 25.9 2.1E+02 0.0046 20.2 4.9 40 24-63 50-90 (153)
94 TIGR00634 recN DNA repair prot 25.1 2.8E+02 0.0061 22.7 6.0 41 2-42 304-344 (563)
95 PF13600 DUF4140: N-terminal d 24.9 1.8E+02 0.004 18.1 4.1 33 21-53 71-103 (104)
96 PRK12705 hypothetical protein; 24.6 4.3E+02 0.0094 22.3 7.6 22 7-28 85-106 (508)
97 PF09738 DUF2051: Double stran 24.6 3.5E+02 0.0077 21.3 6.6 50 1-50 114-170 (302)
98 PF07058 Myosin_HC-like: Myosi 24.6 1E+02 0.0022 25.6 3.4 29 23-51 111-139 (351)
99 PF04880 NUDE_C: NUDE protein, 24.3 78 0.0017 23.2 2.5 41 10-50 14-54 (166)
100 COG4942 Membrane-bound metallo 24.0 4.4E+02 0.0095 22.1 8.5 46 6-51 38-83 (420)
101 TIGR01061 parC_Gpos DNA topois 23.9 3.9E+02 0.0084 23.4 7.0 40 24-63 431-470 (738)
102 PF00261 Tropomyosin: Tropomyo 23.8 2.9E+02 0.0063 20.1 6.0 62 2-63 11-72 (237)
103 PF05600 DUF773: Protein of un 23.6 4.4E+02 0.0095 22.0 8.5 63 1-63 434-497 (507)
104 smart00338 BRLZ basic region l 23.6 1.6E+02 0.0036 17.1 5.8 32 14-45 20-51 (65)
105 PF00631 G-gamma: GGL domain; 23.3 66 0.0014 19.3 1.7 22 27-49 2-23 (68)
106 PF02841 GBP_C: Guanylate-bind 23.2 3.2E+02 0.007 20.4 8.6 6 36-41 245-250 (297)
107 PF10186 Atg14: UV radiation r 23.0 2.8E+02 0.006 19.5 8.7 16 36-51 79-94 (302)
108 PRK11546 zraP zinc resistance 22.9 2.9E+02 0.0064 19.8 6.6 30 33-62 74-103 (143)
109 PF09903 DUF2130: Uncharacteri 22.3 2.9E+02 0.0064 21.1 5.4 25 2-26 2-26 (267)
110 KOG2391|consensus 22.1 4.3E+02 0.0094 22.1 6.6 35 25-59 251-285 (365)
111 PF07798 DUF1640: Protein of u 22.0 2.9E+02 0.0062 19.3 5.5 10 50-59 140-149 (177)
112 COG1340 Uncharacterized archae 21.8 4.2E+02 0.0092 21.2 6.4 42 3-44 52-93 (294)
113 TIGR01063 gyrA DNA gyrase, A s 21.8 2.7E+02 0.0059 24.4 5.7 40 24-63 431-470 (800)
114 PF12128 DUF3584: Protein of u 21.8 6.1E+02 0.013 23.0 10.8 64 2-65 603-666 (1201)
115 PF12548 DUF3740: Sulfatase pr 21.7 1.1E+02 0.0024 21.8 2.8 22 48-69 113-134 (145)
116 KOG4552|consensus 21.6 2.8E+02 0.0061 22.2 5.3 40 20-59 60-99 (272)
117 PF10359 Fmp27_WPPW: RNA pol I 21.6 4E+02 0.0087 21.6 6.3 60 3-62 167-228 (475)
118 PRK05561 DNA topoisomerase IV 21.6 4.8E+02 0.01 22.8 7.1 40 24-63 441-480 (742)
119 COG1579 Zn-ribbon protein, pos 21.5 3.8E+02 0.0083 20.6 9.6 35 8-42 40-74 (239)
120 KOG0976|consensus 21.5 5.2E+02 0.011 24.7 7.5 22 2-23 144-165 (1265)
121 PF01486 K-box: K-box region; 20.9 2.3E+02 0.0051 17.9 4.0 30 35-64 50-84 (100)
122 PF06120 Phage_HK97_TLTM: Tail 20.9 2.9E+02 0.0063 21.9 5.2 32 32-63 72-103 (301)
123 smart00340 HALZ homeobox assoc 20.8 1.2E+02 0.0026 18.4 2.5 19 24-42 16-34 (44)
124 PF12325 TMF_TATA_bd: TATA ele 20.6 3E+02 0.0064 18.9 8.5 62 2-63 19-83 (120)
125 PF15458 NTR2: Nineteen comple 20.3 3.8E+02 0.0083 20.1 6.1 40 3-42 212-251 (254)
126 PRK10884 SH3 domain-containing 20.3 3.7E+02 0.0079 19.9 8.2 14 3-16 104-117 (206)
127 PF10498 IFT57: Intra-flagella 20.1 4.3E+02 0.0094 21.2 6.1 25 19-43 293-317 (359)
No 1
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.56 E-value=9.4e-15 Score=123.40 Aligned_cols=65 Identities=43% Similarity=0.653 Sum_probs=62.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHHHH
Q psy2822 1 VEELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKKKK 65 (78)
Q Consensus 1 VeaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~~~ 65 (78)
||+||+|||+|+++|+|||+++..+++|++++.+||++|+||+|+++|+|++||++||||..-=+
T Consensus 345 ve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ 409 (775)
T PF10174_consen 345 VEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLR 409 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999986543
No 2
>PRK11637 AmiB activator; Provisional
Probab=91.79 E-value=2 Score=33.43 Aligned_cols=49 Identities=18% Similarity=0.361 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHH
Q psy2822 3 ELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKIN 51 (78)
Q Consensus 3 aLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKIn 51 (78)
+++.+|++-+..|...-+.+.+++.+.+.+..+|..+...++--.+.|+
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~ 92 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLR 92 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544444444444444444444443333333333
No 3
>PRK11637 AmiB activator; Provisional
Probab=91.51 E-value=2.4 Score=32.98 Aligned_cols=62 Identities=10% Similarity=0.243 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHH
Q psy2822 2 EELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKK 63 (78)
Q Consensus 2 eaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~ 63 (78)
++++..+++.+..|..-..++.++..+-+.+..+|..+...++--++.|+.++..|..++..
T Consensus 50 ~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~e 111 (428)
T PRK11637 50 KSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNAS 111 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888877777777777777777777777777666666666666666666554
No 4
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=90.35 E-value=2.3 Score=29.66 Aligned_cols=57 Identities=26% Similarity=0.533 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHH
Q psy2822 7 RLEEKNRHIEKKTQTALTAT-----QEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKK 63 (78)
Q Consensus 7 RLEEKe~~l~KKtq~~~~~~-----~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~ 63 (78)
+++++.....+......... ++-.....|+.+|++-++-++.=+..|++.++||++.
T Consensus 129 ~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 129 KLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555544443332 3555788999999999999999999999999999863
No 5
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.70 E-value=3 Score=31.76 Aligned_cols=61 Identities=18% Similarity=0.246 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhh----hHHHHHHhHHHHHHHHH
Q psy2822 2 EELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDI----KDRKINVLQRKEKEKKK 62 (78)
Q Consensus 2 eaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDi----KdRKInVLQrKIENL~~ 62 (78)
+++|..|.+-+..++..+..+..+.+++..+.+||.++...++- -.--|..|+..++.|+.
T Consensus 226 ~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 226 EAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 45667777777777788888888888888888888887766541 11226667777777764
No 6
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=88.84 E-value=5 Score=29.37 Aligned_cols=58 Identities=19% Similarity=0.412 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HH-----HHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHH
Q psy2822 6 SRLEEKNRHIEKKTQTALTA---TQ-----EKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKK 63 (78)
Q Consensus 6 ~RLEEKe~~l~KKtq~~~~~---~~-----EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~ 63 (78)
.+|-+++..|.+=..++..+ .+ |+..++.+|..+.+-|+..|++|..|.++++...+-
T Consensus 89 ~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~ 154 (194)
T PF15619_consen 89 RKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKS 154 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34455555555444444433 33 577889999999999999999999999999876654
No 7
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.04 E-value=7.2 Score=30.39 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhh----hhHHHHHHhHHHHHHHHHH
Q psy2822 2 EELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMD----IKDRKINVLQRKEKEKKKK 63 (78)
Q Consensus 2 eaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lD----iKdRKInVLQrKIENL~~~ 63 (78)
+..+..|++.+..+...+..|.+.++.++.+.++|+++...++ .-..-|+-|..++..|++.
T Consensus 221 ~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 221 MIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999999999999999887532 2233477788888887753
No 8
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=83.56 E-value=15 Score=26.85 Aligned_cols=60 Identities=23% Similarity=0.350 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHHH
Q psy2822 1 VEELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKKK 64 (78)
Q Consensus 1 VeaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~~ 64 (78)
|-.||.||.+ +|.-|..+. .+..++..+..++.+-...++=.|..|..|+.+|..|+...
T Consensus 88 V~~l~~RL~k---LL~lk~~~~-~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~ 147 (190)
T PF05266_consen 88 VKFLRSRLNK---LLSLKDDQE-KLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQA 147 (190)
T ss_pred cHHHHHHHHH---HHHHHHhHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 6689999987 555555544 34455555666666555555556777777888887777653
No 9
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=83.41 E-value=6.5 Score=27.78 Aligned_cols=56 Identities=13% Similarity=0.325 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHH
Q psy2822 6 SRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKK 61 (78)
Q Consensus 6 ~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~ 61 (78)
..|++.+..+......+..++.+...+..++.+|.+.+.-+++=|..|+--+-.|+
T Consensus 102 ~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~ 157 (194)
T PF08614_consen 102 DELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQ 157 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888888899999999999999999999888888887777666554
No 10
>PRK10722 hypothetical protein; Provisional
Probab=80.21 E-value=8.3 Score=30.20 Aligned_cols=43 Identities=16% Similarity=0.319 Sum_probs=36.2
Q ss_pred HHHHHHHHHHh---Hh----HHHHHHhHhhhhhhHHHHHHhHHHHHHHHH
Q psy2822 20 QTALTATQEKN---KM----QAELQEMKDHMDIKDRKINVLQRKEKEKKK 62 (78)
Q Consensus 20 q~~~~~~~EK~---~~----~~El~eLkD~lDiKdRKInVLQrKIENL~~ 62 (78)
-...++.+|+. ++ .++|+-|+++.--=.+-++.+++|+|||-.
T Consensus 155 ~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTd 204 (247)
T PRK10722 155 ALQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTD 204 (247)
T ss_pred HHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888988 77 789999999988888999999999999864
No 11
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=76.69 E-value=21 Score=26.69 Aligned_cols=52 Identities=12% Similarity=0.240 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHH
Q psy2822 4 LRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQR 55 (78)
Q Consensus 4 LR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQr 55 (78)
+..|+..-|++++-.++.+.+++..=..+..||.+||-.++.=...|+-+++
T Consensus 38 ~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 38 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4678888899999999999999999999999999999998887777776554
No 12
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=71.26 E-value=39 Score=25.81 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy2822 4 LRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQ 37 (78)
Q Consensus 4 LR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~ 37 (78)
+|.+|.+=...|+.+.+.+.+++++...+.++|.
T Consensus 214 lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~ 247 (325)
T PF08317_consen 214 LRQELAEQKEEIEAKKKELAELQEELEELEEKIE 247 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433333333333
No 13
>PHA02562 46 endonuclease subunit; Provisional
Probab=71.17 E-value=48 Score=25.94 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHH
Q psy2822 3 ELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKK 63 (78)
Q Consensus 3 aLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~ 63 (78)
.+..++++-+..|......+..+..+...+.+||..|.....--+=.+..|..++.++...
T Consensus 334 ~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~ 394 (562)
T PHA02562 334 EQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKT 394 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666666666655332222344444444444443
No 14
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=71.01 E-value=28 Score=26.74 Aligned_cols=59 Identities=27% Similarity=0.350 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHH
Q psy2822 1 VEELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKE 59 (78)
Q Consensus 1 VeaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIEN 59 (78)
|+.|+..|...+-.|+.+++...++.++=+....+...-+...+..+..+++-+..|.-
T Consensus 17 V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~ 75 (344)
T PF12777_consen 17 VEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEE 75 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999988888877766666666666666666666666665555433
No 15
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=68.82 E-value=28 Score=26.73 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHH
Q psy2822 5 RSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKK 62 (78)
Q Consensus 5 R~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~ 62 (78)
+.+|++.+..|..-...+.+++.+-.....|...|.+.++.=.+++..-++=|..|+.
T Consensus 234 ~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~ 291 (344)
T PF12777_consen 234 EEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSG 291 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcc
Confidence 3444444444444444444444444444444555544444444555444444444443
No 16
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=67.94 E-value=28 Score=29.60 Aligned_cols=60 Identities=22% Similarity=0.389 Sum_probs=50.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHH
Q psy2822 1 VEELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEK 60 (78)
Q Consensus 1 VeaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL 60 (78)
|++|+..+++-+.-+..-+..+.++.++......+..++...+.+++|-+.+|.--=+|+
T Consensus 337 l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni 396 (594)
T PF05667_consen 337 LDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENI 396 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 467888888888888888899999999999999999999999999999888876554444
No 17
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=67.64 E-value=68 Score=26.87 Aligned_cols=10 Identities=20% Similarity=0.149 Sum_probs=3.6
Q ss_pred HHHHhHHHHH
Q psy2822 49 KINVLQRKEK 58 (78)
Q Consensus 49 KInVLQrKIE 58 (78)
.+..+++.++
T Consensus 449 ~l~~l~~~~~ 458 (1164)
T TIGR02169 449 EIKKQEWKLE 458 (1164)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 18
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=66.30 E-value=49 Score=25.83 Aligned_cols=63 Identities=14% Similarity=0.237 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHHHH
Q psy2822 3 ELRSRLEEKNRHIEKKTQTALTATQEK-NKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKKKK 65 (78)
Q Consensus 3 aLR~RLEEKe~~l~KKtq~~~~~~~EK-~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~~~ 65 (78)
.+--.|.++-..|...-.+++++.++- +.+.+|+..++.-+.--+.-|...+.++++++..-.
T Consensus 172 ~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~ 235 (312)
T smart00787 172 SIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQ 235 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566677777888888888888885 578889998888777777777777777777766543
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=63.82 E-value=81 Score=28.13 Aligned_cols=62 Identities=24% Similarity=0.438 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHH
Q psy2822 2 EELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKK 63 (78)
Q Consensus 2 eaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~ 63 (78)
+.++..+++-...++..+...+.+......+.+++..+++..+-..+.+..++..++.+..+
T Consensus 270 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1163)
T COG1196 270 EELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEK 331 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666677777777777777776666666666555555443
No 20
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=63.77 E-value=46 Score=22.97 Aligned_cols=61 Identities=20% Similarity=0.446 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhh---------h-hhhHHHHHH--hHHHHHHHHH
Q psy2822 2 EELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDH---------M-DIKDRKINV--LQRKEKEKKK 62 (78)
Q Consensus 2 eaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~---------l-DiKdRKInV--LQrKIENL~~ 62 (78)
..++..|.+....+.+--..+..+..++..+......|+.. | |.-..+..+ |+..|++|..
T Consensus 94 ~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~r 166 (177)
T PF13870_consen 94 ERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELER 166 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999998865 3 444444433 5556666554
No 21
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=63.63 E-value=36 Score=24.81 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=20.4
Q ss_pred HHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHH
Q psy2822 26 TQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKK 62 (78)
Q Consensus 26 ~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~ 62 (78)
.+.+..+.+||..|+..+|--..-...|+..|++|+.
T Consensus 95 ~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~e 131 (312)
T PF00038_consen 95 LAERKDLEEELESLRKDLDEETLARVDLENQIQSLKE 131 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHH
Confidence 4444455555666665555444444446666666654
No 22
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=60.27 E-value=52 Score=22.50 Aligned_cols=50 Identities=16% Similarity=0.244 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHH--HHHhHHHHHHHHH
Q psy2822 13 RHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRK--INVLQRKEKEKKK 62 (78)
Q Consensus 13 ~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRK--InVLQrKIENL~~ 62 (78)
.-|..-+.++.++..+-+.+.+||..|.-++...+.. |..|...|+.|..
T Consensus 79 ~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~ 130 (169)
T PF07106_consen 79 AEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEE 130 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3466777788888888888889988888887555433 3335555554443
No 23
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=59.85 E-value=95 Score=26.04 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=8.7
Q ss_pred HHHHHhHhhhhhhHHHHHHhHHHH
Q psy2822 34 AELQEMKDHMDIKDRKINVLQRKE 57 (78)
Q Consensus 34 ~El~eLkD~lDiKdRKInVLQrKI 57 (78)
.++.++.+.++.-...+..+++.+
T Consensus 882 ~~l~~l~~~~~~l~~~~~~l~~~~ 905 (1164)
T TIGR02169 882 SRLGDLKKERDELEAQLRELERKI 905 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 24
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=59.25 E-value=24 Score=22.16 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=13.7
Q ss_pred hHHHHHHhHhhhhhhHHHHHHhHH
Q psy2822 32 MQAELQEMKDHMDIKDRKINVLQR 55 (78)
Q Consensus 32 ~~~El~eLkD~lDiKdRKInVLQr 55 (78)
+.+|+..|+.+||.=.|++.+-+-
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~ 26 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEI 26 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666655443
No 25
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=56.30 E-value=1e+02 Score=24.63 Aligned_cols=61 Identities=25% Similarity=0.411 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHH
Q psy2822 2 EELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKK 62 (78)
Q Consensus 2 eaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~ 62 (78)
+++|..-.++|.-...-..++..+.+.++.+..++.+|++--+==.=+++.|-..+.++..
T Consensus 37 ~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e 97 (294)
T COG1340 37 SELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKE 97 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667777667777777777777777777777776543333344445555555544
No 26
>KOG4673|consensus
Probab=55.40 E-value=68 Score=29.46 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHHHHHH
Q psy2822 3 ELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKKKKKK 67 (78)
Q Consensus 3 aLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~~~~~ 67 (78)
-||....|=++|+.|+-.+|+.++ +|.+.|+-.|+-|+-.=-.+|..|+-++.....-
T Consensus 478 KLRAk~ke~etl~~K~ge~i~~L~-------sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq 535 (961)
T KOG4673|consen 478 KLRAKIKEAETLEEKKGELITKLQ-------SEENKLKSILRDKEETEKLLQETIEKHQAELTRQ 535 (961)
T ss_pred HHHHHhhhhhHHHHHhhhHHHHHH-------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888999998888877 8899999999999888888888888888765543
No 27
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=54.32 E-value=42 Score=19.53 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHh
Q psy2822 7 RLEEKNRHIEKKTQTALTATQEKNKMQAELQEM 39 (78)
Q Consensus 7 RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eL 39 (78)
++...+..+..-+.++.++.++...+..|+..|
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666777777777777777777777
No 28
>PRK01156 chromosome segregation protein; Provisional
Probab=54.02 E-value=1.2e+02 Score=25.69 Aligned_cols=52 Identities=8% Similarity=0.245 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHH
Q psy2822 9 EEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEK 60 (78)
Q Consensus 9 EEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL 60 (78)
++-+.-+......+..+..+.+.+.+++..+.+.++--..++..+++.++.+
T Consensus 677 ~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l 728 (895)
T PRK01156 677 NDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESM 728 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3333344444444455555555555555555555444444444444444433
No 29
>PRK09039 hypothetical protein; Validated
Probab=53.52 E-value=48 Score=25.88 Aligned_cols=44 Identities=9% Similarity=0.206 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHH
Q psy2822 19 TQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKK 62 (78)
Q Consensus 19 tq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~ 62 (78)
++++....++=..+.++|.+|=++|++......-||..|..++.
T Consensus 45 s~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~ 88 (343)
T PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRA 88 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35666777777778888888888888888888888888777665
No 30
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=52.68 E-value=1.3e+02 Score=24.88 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHHHH
Q psy2822 20 QTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKKKK 65 (78)
Q Consensus 20 q~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~~~ 65 (78)
..+..+.++...+..+|.++...++-..+.|..+...|+.+.+.-.
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777778888888888888888888888888888877766543
No 31
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=50.82 E-value=60 Score=20.34 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=26.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHh
Q psy2822 1 VEELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEM 39 (78)
Q Consensus 1 VeaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eL 39 (78)
|.+||.||..=.+.+..=-.....+..|+....+-|.+.
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a 45 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDA 45 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788887776766666666677777777666655543
No 32
>PHA02562 46 endonuclease subunit; Provisional
Probab=50.29 E-value=1.2e+02 Score=23.71 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhh-------hhhhHHHHHHhHHHHHHHHHH
Q psy2822 6 SRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDH-------MDIKDRKINVLQRKEKEKKKK 63 (78)
Q Consensus 6 ~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~-------lDiKdRKInVLQrKIENL~~~ 63 (78)
.-|+..-..++..-..+.....+...+..++.++++. ++-.-+.++.|+..|++|...
T Consensus 309 ~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~ 373 (562)
T PHA02562 309 KELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE 373 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444444444455544444 444444555566666666554
No 33
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=49.96 E-value=88 Score=21.99 Aligned_cols=51 Identities=14% Similarity=0.260 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHh-hhhhhHHHHHHhHHHHHHHHHHHHH
Q psy2822 4 LRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKD-HMDIKDRKINVLQRKEKEKKKKKKK 66 (78)
Q Consensus 4 LR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD-~lDiKdRKInVLQrKIENL~~~~~~ 66 (78)
.+.+++..+..++.--.|+.++. ..|.+|++ ..| +.-||.+|+.|+..-+.
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d-------~~i~~Lk~~~~d-----~eeLk~~i~~lq~~~~~ 69 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEAD-------KQIKDLKKSAKD-----NEELKKQIEELQAKNKT 69 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhccCC-----HHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443 55555555 222 33488888888876653
No 34
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=49.56 E-value=68 Score=20.53 Aligned_cols=38 Identities=11% Similarity=0.227 Sum_probs=20.7
Q ss_pred HHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHH
Q psy2822 24 TATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKK 61 (78)
Q Consensus 24 ~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~ 61 (78)
.+......+.+++..|...++-.+..++-++.+|+.++
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555555555555555556666666554
No 35
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=49.14 E-value=96 Score=22.18 Aligned_cols=50 Identities=16% Similarity=0.426 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHH
Q psy2822 3 ELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINV 52 (78)
Q Consensus 3 aLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInV 52 (78)
.+..||..++..|+.+...+....++=.....+|+...+.++-....+.-
T Consensus 82 ~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~ 131 (201)
T PF12072_consen 82 RLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777666666666666666666655555544
No 36
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=49.05 E-value=76 Score=25.54 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2822 3 ELRSRLEEKNRHIEKKTQTALTATQEKN 30 (78)
Q Consensus 3 aLR~RLEEKe~~l~KKtq~~~~~~~EK~ 30 (78)
+|+.+|++.+.-++.=...+..+.-|.+
T Consensus 153 eL~~eleele~e~ee~~erlk~le~E~s 180 (290)
T COG4026 153 ELLKELEELEAEYEEVQERLKRLEVENS 180 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544444444443333
No 37
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=48.94 E-value=53 Score=23.96 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhh--hhhHHHHHH
Q psy2822 11 KNRHIEKKTQTALTATQEKNKMQAELQEMKDHM--DIKDRKINV 52 (78)
Q Consensus 11 Ke~~l~KKtq~~~~~~~EK~~~~~El~eLkD~l--DiKdRKInV 52 (78)
=.+.++.+..++..++.+++.+.+||.-.++.| -+-.|++-+
T Consensus 82 a~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~e 125 (136)
T PF11570_consen 82 AQKDVQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRKQKE 125 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 356888999999999999999999999999998 666776653
No 38
>PHA01750 hypothetical protein
Probab=48.15 E-value=65 Score=21.42 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=25.0
Q ss_pred HhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHH
Q psy2822 29 KNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKK 63 (78)
Q Consensus 29 K~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~ 63 (78)
+.-..+||+.|+..+.-=.-+++-|+++|+.+.++
T Consensus 37 keIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 37 KEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34556788888776654456777799999888654
No 39
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=47.61 E-value=40 Score=27.16 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHhHhHHHHHHhHhhhh
Q psy2822 5 RSRLEEKNRHIEKKTQ--TALTATQEKNKMQAELQEMKDHMD 44 (78)
Q Consensus 5 R~RLEEKe~~l~KKtq--~~~~~~~EK~~~~~El~eLkD~lD 44 (78)
|+||+++--+|+-+-. ...++.+|++.++.++.-|-|.||
T Consensus 197 rLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~ 238 (289)
T COG4985 197 RLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELD 238 (289)
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888777765532 334677788887777776666554
No 40
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=46.72 E-value=1.4e+02 Score=23.33 Aligned_cols=61 Identities=25% Similarity=0.250 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHhHHHHHHhHhhhh----hhHHHHHHhHHHHHHHHH
Q psy2822 2 EELRSRLEEKNRHIEKKT----QTALTATQEKNKMQAELQEMKDHMD----IKDRKINVLQRKEKEKKK 62 (78)
Q Consensus 2 eaLR~RLEEKe~~l~KKt----q~~~~~~~EK~~~~~El~eLkD~lD----iKdRKInVLQrKIENL~~ 62 (78)
+.++..|.+-+...+.+. +|+.++.+.=.....|++-|...+| ||-..|.-|.+.|.+|..
T Consensus 66 ~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~ 134 (258)
T PF15397_consen 66 QQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKD 134 (258)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 456667777666666654 5566677777777888888888877 667788888888888764
No 41
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=45.85 E-value=1.5e+02 Score=23.39 Aligned_cols=58 Identities=22% Similarity=0.355 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHH
Q psy2822 3 ELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEK 60 (78)
Q Consensus 3 aLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL 60 (78)
+|+-.|-|=+.-..|=-..--||--||+.+.-++.-|+|.|.--+--+.-|||.++..
T Consensus 81 ~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK 138 (302)
T PF09738_consen 81 DLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREK 138 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444334444444557778999999999999999888888888888887543
No 42
>PRK02224 chromosome segregation protein; Provisional
Probab=45.12 E-value=1.9e+02 Score=24.35 Aligned_cols=40 Identities=10% Similarity=0.252 Sum_probs=21.3
Q ss_pred HHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHH
Q psy2822 22 ALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKK 61 (78)
Q Consensus 22 ~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~ 61 (78)
+.++......+...+++..+.++...+.+..|+..++.|.
T Consensus 511 l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~ 550 (880)
T PRK02224 511 IERLEERREDLEELIAERRETIEEKRERAEELRERAAELE 550 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555556666666666665553
No 43
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=42.92 E-value=75 Score=24.15 Aligned_cols=42 Identities=10% Similarity=0.113 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhHhHHHHHHhHhhhhhhHH
Q psy2822 7 RLEEKNRHIEKKTQTA-LTATQEKNKMQAELQEMKDHMDIKDR 48 (78)
Q Consensus 7 RLEEKe~~l~KKtq~~-~~~~~EK~~~~~El~eLkD~lDiKdR 48 (78)
.|.+-|..|..+-.++ .+++..-..+..|...|+.+|+++++
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~~ 112 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPLS 112 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 3555666666554444 33333333488899999999998765
No 44
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=42.29 E-value=85 Score=22.89 Aligned_cols=41 Identities=22% Similarity=0.398 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhH
Q psy2822 7 RLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKD 47 (78)
Q Consensus 7 RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKd 47 (78)
.|.+.|..|.+.-..+....++=..+..|...|++.|++..
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~ 113 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRELLNLKE 113 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 45666666766666665555555577788888888887764
No 45
>PRK04863 mukB cell division protein MukB; Provisional
Probab=41.90 E-value=1.9e+02 Score=27.48 Aligned_cols=61 Identities=23% Similarity=0.368 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHH
Q psy2822 2 EELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKK 62 (78)
Q Consensus 2 eaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~ 62 (78)
++|..++++-+..++.....+..+.++...+..++.+|+..+.--...+..+|..+..++.
T Consensus 358 eELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq 418 (1486)
T PRK04863 358 EELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQ 418 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666777777766655555555555555544443
No 46
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=41.60 E-value=78 Score=24.18 Aligned_cols=44 Identities=18% Similarity=0.303 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHH
Q psy2822 6 SRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRK 49 (78)
Q Consensus 6 ~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRK 49 (78)
..+...|+.+...-..+.+...+-..+..|-..|+++|+.....
T Consensus 69 ~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~~~ 112 (284)
T COG1792 69 KDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKESS 112 (284)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 45667778888888888888888889999999999999887643
No 47
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=40.85 E-value=1.9e+02 Score=23.17 Aligned_cols=54 Identities=30% Similarity=0.464 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhh---------------hhhhHHHHHHhHHHHHHHHHH
Q psy2822 7 RLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDH---------------MDIKDRKINVLQRKEKEKKKK 63 (78)
Q Consensus 7 RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~---------------lDiKdRKInVLQrKIENL~~~ 63 (78)
+|.+.+..|.+..+ .+.++-+.+..+|.++-+. |.-|..||--||+.+..++..
T Consensus 141 ~l~~~~~~L~~ene---rL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~ 209 (342)
T PF06632_consen 141 RLQAENEHLQKENE---RLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEE 209 (342)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcc
Confidence 45555555544443 3344444555555444332 666888888888888887764
No 48
>PF14282 FlxA: FlxA-like protein
Probab=40.46 E-value=1.1e+02 Score=20.18 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhHhHHHHHHhHhh--h--hhhHHHHHHhHHHHHHHHH
Q psy2822 19 TQTALTATQEKNKMQAELQEMKDH--M--DIKDRKINVLQRKEKEKKK 62 (78)
Q Consensus 19 tq~~~~~~~EK~~~~~El~eLkD~--l--DiKdRKInVLQrKIENL~~ 62 (78)
+.+|..|......+..+|.+|.+- | +.|.-++-.||..|..|+.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~Lqa 65 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQA 65 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777888888882 3 3456667777777777654
No 49
>KOG4603|consensus
Probab=40.00 E-value=93 Score=23.97 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHH
Q psy2822 8 LEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKK 62 (78)
Q Consensus 8 LEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~ 62 (78)
|..+..-+.. +.+.+++.=+-..+||.+|-.+|.+.+ +|..|-.|.+
T Consensus 84 ld~~i~~l~e---k~q~l~~t~s~veaEik~L~s~Lt~ee-----mQe~i~~L~k 130 (201)
T KOG4603|consen 84 LDGKIVALTE---KVQSLQQTCSYVEAEIKELSSALTTEE-----MQEEIQELKK 130 (201)
T ss_pred HhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcChHH-----HHHHHHHHHH
Confidence 4445444443 445677777889999999999998764 5555555544
No 50
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=39.64 E-value=1.6e+02 Score=22.16 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=24.4
Q ss_pred HHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHH
Q psy2822 21 TALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEK 60 (78)
Q Consensus 21 ~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL 60 (78)
.+.++.+|.|.+.+.|...+...+--...|+.++.-+..|
T Consensus 54 eLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~L 93 (230)
T PF10146_consen 54 ELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPL 93 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566666666666666666666666666666555444
No 51
>PRK09039 hypothetical protein; Validated
Probab=39.51 E-value=1.8e+02 Score=22.67 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHH
Q psy2822 19 TQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEK 60 (78)
Q Consensus 19 tq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL 60 (78)
.++|..+.+.-..+.++|........-...+|..|+..|++.
T Consensus 143 ~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 143 NQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333433334444444444444433444444444444433
No 52
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=39.01 E-value=1.5e+02 Score=21.52 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q psy2822 2 EELRSRLEEKNRHIEKKTQTALTATQEKNKMQAE 35 (78)
Q Consensus 2 eaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~E 35 (78)
.++..+...|+-+|++|-+.+.+.-+.+....+|
T Consensus 135 ~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~e 168 (201)
T PF13851_consen 135 QEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNE 168 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888887777776666544443
No 53
>KOG4010|consensus
Probab=38.90 E-value=93 Score=24.10 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=29.4
Q ss_pred HHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHH
Q psy2822 24 TATQEKNKMQAELQEMKDHMDIKDRKINVLQRKE 57 (78)
Q Consensus 24 ~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKI 57 (78)
++.+|-.++..||.-|+..|.-|+|-..-|-||+
T Consensus 48 elr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777888999999999999999988888874
No 54
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=38.41 E-value=78 Score=23.38 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=29.4
Q ss_pred HHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHH
Q psy2822 24 TATQEKNKMQAELQEMKDHMDIKDRKINVLQRKE 57 (78)
Q Consensus 24 ~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKI 57 (78)
++..|-.....||.-|+..|-.|+|-..-|.|++
T Consensus 33 eLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 33 ELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5666777788999999999999999999999984
No 55
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=38.37 E-value=93 Score=18.93 Aligned_cols=38 Identities=13% Similarity=0.299 Sum_probs=22.0
Q ss_pred HHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHH
Q psy2822 25 ATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKK 62 (78)
Q Consensus 25 ~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~ 62 (78)
+.+.=++..+.++++.+-++.-|+-..++...|.|+..
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~ 41 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNK 41 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666666666666666666666666554
No 56
>PF08663 HalX: HalX domain; InterPro: IPR013971 HalX is a protein of unknown function, previously mis-annotated as HoxA-like transcriptional regulator. It is C-terminal to a CheY-like superfamily domain and suggests a role as a response regulator.
Probab=36.83 E-value=74 Score=20.14 Aligned_cols=38 Identities=18% Similarity=0.455 Sum_probs=28.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhHhHHHHHHhHhhhh
Q psy2822 7 RLEEKNRHI-EKKTQTALTATQEKNKMQAELQEMKDHMD 44 (78)
Q Consensus 7 RLEEKe~~l-~KKtq~~~~~~~EK~~~~~El~eLkD~lD 44 (78)
.|..|-..| ..|+..-++-.++=..+..+|.+|++.+|
T Consensus 15 al~sK~A~Leaek~~~eL~~seeY~eL~~ri~~lr~~ld 53 (71)
T PF08663_consen 15 ALASKRAVLEAEKSEAELEESEEYQELEDRIEELRAELD 53 (71)
T ss_pred HHHHHHHHHHhcCCHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 466677777 56777767777777788888888887766
No 57
>KOG0161|consensus
Probab=36.75 E-value=1.9e+02 Score=28.60 Aligned_cols=56 Identities=18% Similarity=0.368 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHH
Q psy2822 8 LEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKK 63 (78)
Q Consensus 8 LEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~ 63 (78)
+++-.+.++.....+.++..++..++++|.++++.++.--|.-..|.-.+.+++..
T Consensus 1275 ~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e 1330 (1930)
T KOG0161|consen 1275 NEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHE 1330 (1930)
T ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666667778888888999999999999999888888887777777654
No 58
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=36.70 E-value=95 Score=18.55 Aligned_cols=57 Identities=25% Similarity=0.479 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHH
Q psy2822 2 EELRSRLEEKNRHIEKKTQTALTA-TQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKK 62 (78)
Q Consensus 2 eaLR~RLEEKe~~l~KKtq~~~~~-~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~ 62 (78)
+.|+.+|+ +|.-+-.-+..+.++ +.++... +.+.-.++.--.++|+.|+..|+-++.
T Consensus 4 ~~L~~~i~-~E~ki~~Gae~m~~~~~t~~~~~---~~~~~~~l~~s~~kI~~L~~~L~~l~~ 61 (70)
T PF02185_consen 4 EELQKKID-KELKIKEGAENMLQAYSTDKKKV---LSEAESQLRESNQKIELLREQLEKLQQ 61 (70)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHCCHHCH----HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHccCcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555553 455555555555554 3232221 445556677788999999999988764
No 59
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=35.93 E-value=79 Score=21.08 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHhHhh
Q psy2822 12 NRHIEKKTQTALTATQEKNKMQAELQEMKDH 42 (78)
Q Consensus 12 e~~l~KKtq~~~~~~~EK~~~~~El~eLkD~ 42 (78)
+..+....+++..+.++...+..|+..|+|-
T Consensus 56 ~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 56 QRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445577888888999999999999999987
No 60
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=35.92 E-value=93 Score=18.21 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHhHhhhh
Q psy2822 14 HIEKKTQTALTATQEKNKMQAELQEMKDHMD 44 (78)
Q Consensus 14 ~l~KKtq~~~~~~~EK~~~~~El~eLkD~lD 44 (78)
...+|-.++.++...-..+.+|...|+..++
T Consensus 20 ~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~ 50 (64)
T PF00170_consen 20 SRQRKKQYIEELEEKVEELESENEELKKELE 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888777778888777776544
No 61
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=35.47 E-value=2.7e+02 Score=23.37 Aligned_cols=62 Identities=6% Similarity=0.236 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhh-------hhhhHHHHHHhHHHHHHHHHHH
Q psy2822 3 ELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDH-------MDIKDRKINVLQRKEKEKKKKK 64 (78)
Q Consensus 3 aLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~-------lDiKdRKInVLQrKIENL~~~~ 64 (78)
..+.-|++.++-|...-++...++.+-..+..||+.+... ++--++.|..+...|+-|+...
T Consensus 42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3455667777777666666666665555555555555444 6666777777777777776654
No 62
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=34.10 E-value=2.1e+02 Score=21.70 Aligned_cols=41 Identities=17% Similarity=0.309 Sum_probs=24.5
Q ss_pred HHHHHHHHHhHhH-------HHHHHhHhhhhhhHHHHHHhHHHHHHHH
Q psy2822 21 TALTATQEKNKMQ-------AELQEMKDHMDIKDRKINVLQRKEKEKK 61 (78)
Q Consensus 21 ~~~~~~~EK~~~~-------~El~eLkD~lDiKdRKInVLQrKIENL~ 61 (78)
...++.+|+++.. +||.-|+++-.-=.--.+.-.||+|||-
T Consensus 110 lql~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLT 157 (179)
T PF13942_consen 110 LQLQLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLT 157 (179)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3446677776542 5777777764444444555666777774
No 63
>KOG3990|consensus
Probab=34.03 E-value=75 Score=25.79 Aligned_cols=53 Identities=25% Similarity=0.367 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHH
Q psy2822 3 ELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKK 62 (78)
Q Consensus 3 aLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~ 62 (78)
-|..+|-+|..+|-.|-.||+.|-+++.-+ .|+.-+-++ ++.-||++++.+-+
T Consensus 236 ~Lkk~L~qkdq~ileKdkqisnLKad~e~~-~~~ek~Hke------~v~qL~~k~~~~lk 288 (305)
T KOG3990|consen 236 RLKKLLHQKDQLILEKDKQISNLKADKEYQ-KELEKKHKE------RVQQLQKKKEESLK 288 (305)
T ss_pred HHHHHHhhhHHHHHhhhhhhhccCcchhHH-HHHHHHHHH------HHHHHHHHHHHHHH
Confidence 466788999999999999999998873322 444433332 24456766655443
No 64
>PRK01203 prefoldin subunit alpha; Provisional
Probab=33.91 E-value=1.4e+02 Score=21.10 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHh
Q psy2822 1 VEELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEM 39 (78)
Q Consensus 1 VeaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eL 39 (78)
|+.|..++++=+..+..|+.++..++.-=+.++ |+++
T Consensus 89 ie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~--~~~~ 125 (130)
T PRK01203 89 IERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY--ITEA 125 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 356677777777777777777777765555555 4443
No 65
>KOG2264|consensus
Probab=33.69 E-value=1.8e+02 Score=26.65 Aligned_cols=46 Identities=22% Similarity=0.362 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHH
Q psy2822 8 LEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEK 60 (78)
Q Consensus 8 LEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL 60 (78)
|+|--+++.-=...+++++.-+..++|||.+++. ||..|++-|++-
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~-------kiEelk~~i~~~ 126 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINT-------KIEELKRLIPQK 126 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHh
Confidence 5666677777788889999999999999999876 444454444443
No 66
>KOG3335|consensus
Probab=33.27 E-value=42 Score=25.39 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2822 3 ELRSRLEEKNRHIEKKTQTALTAT 26 (78)
Q Consensus 3 aLR~RLEEKe~~l~KKtq~~~~~~ 26 (78)
+||.++++.+-.|+..|..+.+|-
T Consensus 110 elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 110 ELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444444444443
No 67
>KOG4001|consensus
Probab=32.34 E-value=1.1e+02 Score=24.37 Aligned_cols=39 Identities=28% Similarity=0.353 Sum_probs=32.2
Q ss_pred HHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHH
Q psy2822 21 TALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKE 59 (78)
Q Consensus 21 ~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIEN 59 (78)
.++++.+++.++..++..|.|--.-=+++|+-+..|.|.
T Consensus 179 KALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~ 217 (259)
T KOG4001|consen 179 KALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLET 217 (259)
T ss_pred HHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 467888999999999999998877778888888777654
No 68
>PRK12704 phosphodiesterase; Provisional
Probab=32.08 E-value=3e+02 Score=22.93 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2822 8 LEEKNRHIEKKTQTALT 24 (78)
Q Consensus 8 LEEKe~~l~KKtq~~~~ 24 (78)
|+.++..|+++...+..
T Consensus 91 L~~Ree~Le~r~e~Lek 107 (520)
T PRK12704 91 LLQKEENLDRKLELLEK 107 (520)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444443333
No 69
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=31.96 E-value=2.6e+02 Score=22.08 Aligned_cols=58 Identities=17% Similarity=0.274 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHH
Q psy2822 2 EELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKE 59 (78)
Q Consensus 2 eaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIEN 59 (78)
.|||.|+.|=....++=.-++....+|-..+..+|..|...+.-|+--+-|-|--++|
T Consensus 247 ~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~ 304 (384)
T PF03148_consen 247 AALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLEN 304 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 3789999998888888888888888888888999999988877777666665544443
No 70
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=31.69 E-value=2.6e+02 Score=22.02 Aligned_cols=43 Identities=14% Similarity=0.325 Sum_probs=21.5
Q ss_pred HHHHHHHHhHhHHHHHHhHhhhh---hhHHHHHHhHHHHHHHHHHH
Q psy2822 22 ALTATQEKNKMQAELQEMKDHMD---IKDRKINVLQRKEKEKKKKK 64 (78)
Q Consensus 22 ~~~~~~EK~~~~~El~eLkD~lD---iKdRKInVLQrKIENL~~~~ 64 (78)
+..++++.+.+..+|.+|.+.+. -..+++..++..++++.+..
T Consensus 244 ~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~ 289 (406)
T PF02388_consen 244 LESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRI 289 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHH
Confidence 34444555555555555555432 23455555555555555443
No 71
>PRK02224 chromosome segregation protein; Provisional
Probab=31.67 E-value=3.1e+02 Score=23.04 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHH--------------HHHHhHHHHHHHHHHH
Q psy2822 4 LRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDR--------------KINVLQRKEKEKKKKK 64 (78)
Q Consensus 4 LR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdR--------------KInVLQrKIENL~~~~ 64 (78)
|+.++++=+..++....++.........+..|+.+|++.++-..+ +|.-+..++.++....
T Consensus 514 l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 588 (880)
T PRK02224 514 LEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERI 588 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555666666666666666666544444 5555666666655543
No 72
>PRK05560 DNA gyrase subunit A; Validated
Probab=31.37 E-value=1.4e+02 Score=26.03 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=35.5
Q ss_pred HHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHH
Q psy2822 23 LTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKK 63 (78)
Q Consensus 23 ~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~ 63 (78)
..+++|-..+..||.+|+..|+-.++-++++-..+..++++
T Consensus 433 ~kL~~E~~~l~~ei~~l~~iL~~~~~l~~~i~~EL~~ikkk 473 (805)
T PRK05560 433 DKIEDEYKELLALIADLKDILASPERLLEIIKEELLEIKEK 473 (805)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999999999999999998888888765
No 73
>KOG0161|consensus
Probab=31.22 E-value=3.1e+02 Score=27.22 Aligned_cols=60 Identities=17% Similarity=0.265 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHH
Q psy2822 3 ELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKK 62 (78)
Q Consensus 3 aLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~ 62 (78)
.|-.++++.+..+.+-++++.++++...-+..++..-+....=-+|.-.-|...++.|+.
T Consensus 1080 ~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~ 1139 (1930)
T KOG0161|consen 1080 QLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKE 1139 (1930)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888877777777777777766666666666666666654
No 74
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=31.20 E-value=1.8e+02 Score=20.23 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHhHhhhh-----hhHHHHHHhHHHHHHHHHHHHHH
Q psy2822 17 KKTQTALTATQEKNKMQAELQEMKDHMD-----IKDRKINVLQRKEKEKKKKKKKK 67 (78)
Q Consensus 17 KKtq~~~~~~~EK~~~~~El~eLkD~lD-----iKdRKInVLQrKIENL~~~~~~~ 67 (78)
+.+.+..+++.|-..+..|++-+--+=+ =-+|++|-+...++.++..-...
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~ 92 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSE 92 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555544422200 13899999999999988765543
No 75
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.09 E-value=4.1e+02 Score=24.23 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhh--HHHHHHhHHHHHHHHH
Q psy2822 9 EEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIK--DRKINVLQRKEKEKKK 62 (78)
Q Consensus 9 EEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiK--dRKInVLQrKIENL~~ 62 (78)
++-+.-++..+..+..+..+-+.+..+-..|.|.++.. .+.+.-+...|.+|..
T Consensus 987 e~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~ 1042 (1311)
T TIGR00606 987 EECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLK 1042 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555566666666666 5555556666666654
No 76
>KOG0250|consensus
Probab=30.81 E-value=3.9e+02 Score=25.26 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=25.8
Q ss_pred HHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHH
Q psy2822 22 ALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKK 63 (78)
Q Consensus 22 ~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~ 63 (78)
+-.+-++-+.+..++.+...-++--.++|.-|+++|+|-+.-
T Consensus 417 ~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~ 458 (1074)
T KOG0250|consen 417 INSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEE 458 (1074)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444666678888999999998743
No 77
>PTZ00421 coronin; Provisional
Probab=30.74 E-value=1.7e+02 Score=23.87 Aligned_cols=45 Identities=7% Similarity=0.131 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHH
Q psy2822 13 RHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKE 57 (78)
Q Consensus 13 ~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKI 57 (78)
..+..+..+++++.+.-.+...||.-+++.|.-|++-+..--.+|
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (493)
T PTZ00421 446 GILDERLGRLQALSEKLRTQHEEIKRCREALQKKESIVMETLEKI 490 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677788899999999999999999999998888655433344
No 78
>PRK04863 mukB cell division protein MukB; Provisional
Probab=30.61 E-value=3.4e+02 Score=25.96 Aligned_cols=59 Identities=20% Similarity=0.314 Sum_probs=44.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHH
Q psy2822 1 VEELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKE 59 (78)
Q Consensus 1 VeaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIEN 59 (78)
++.|+.+|+.=+.....=-.+..+++++.+...+++..+...++.......-++..+.+
T Consensus 987 ~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~ 1045 (1486)
T PRK04863 987 NEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQD 1045 (1486)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888777777777777788888888888888888888877777766666555544
No 79
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.99 E-value=2.5e+02 Score=21.40 Aligned_cols=46 Identities=9% Similarity=0.404 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHH
Q psy2822 5 RSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKIN 51 (78)
Q Consensus 5 R~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKIn 51 (78)
+.| +.++.-++++.+......+||..+..|+.++.+-++--.+-|.
T Consensus 156 k~R-~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a~~~~k 201 (243)
T cd07666 156 KRR-DQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECANNALK 201 (243)
T ss_pred HHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 4677778888888888888999999999999887766644433
No 80
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=29.48 E-value=2.7e+02 Score=21.55 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhHhHHHHHHhHhh
Q psy2822 19 TQTALTATQEKNKMQAELQEMKDH 42 (78)
Q Consensus 19 tq~~~~~~~EK~~~~~El~eLkD~ 42 (78)
.+.+..+..+...+..||.+|...
T Consensus 63 ~~eL~~LE~e~~~l~~el~~le~e 86 (314)
T PF04111_consen 63 LQELEELEKEREELDQELEELEEE 86 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555554444443
No 81
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=29.04 E-value=1.9e+02 Score=19.72 Aligned_cols=57 Identities=12% Similarity=0.279 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH--HHhHhhhhhhHHHHHHhHHHHHHHHH
Q psy2822 6 SRLEEKNRHIEKKTQTALTATQEKNKMQAEL--QEMKDHMDIKDRKINVLQRKEKEKKK 62 (78)
Q Consensus 6 ~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El--~eLkD~lDiKdRKInVLQrKIENL~~ 62 (78)
..+.+-...+..=......+.++-+.+.+++ .+|.+.+.--.-.|..|+.+++.|..
T Consensus 79 ~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 79 AEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444555556666666666655 45666655555566666666666654
No 82
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=28.64 E-value=2e+02 Score=19.86 Aligned_cols=41 Identities=20% Similarity=0.341 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhh
Q psy2822 6 SRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIK 46 (78)
Q Consensus 6 ~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiK 46 (78)
.+...++.-|.-=+..+..+..+-..+...|.++++.++-.
T Consensus 28 ~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~ 68 (143)
T PF12718_consen 28 QENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES 68 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444455454445555555555555566666666654443
No 83
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=28.62 E-value=4.3e+02 Score=23.67 Aligned_cols=41 Identities=24% Similarity=0.389 Sum_probs=23.4
Q ss_pred HHHHHHhHhHHHHHHhHhhhhh---hHHHHHHhHHHHHHHHHHH
Q psy2822 24 TATQEKNKMQAELQEMKDHMDI---KDRKINVLQRKEKEKKKKK 64 (78)
Q Consensus 24 ~~~~EK~~~~~El~eLkD~lDi---KdRKInVLQrKIENL~~~~ 64 (78)
++..+-..+.+++..++.-++. ++|.|-.+++.|+.|.++=
T Consensus 447 e~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L 490 (652)
T COG2433 447 ELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKEL 490 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3444555566666666655543 3556666666666666543
No 84
>PHA00489 scaffolding protein
Probab=28.10 E-value=2.1e+02 Score=19.95 Aligned_cols=37 Identities=16% Similarity=0.375 Sum_probs=29.9
Q ss_pred HHHHHHHHH----------HHHHHHHHHHHHHhHhHHHHHHhHhhhh
Q psy2822 8 LEEKNRHIE----------KKTQTALTATQEKNKMQAELQEMKDHMD 44 (78)
Q Consensus 8 LEEKe~~l~----------KKtq~~~~~~~EK~~~~~El~eLkD~lD 44 (78)
+||=|.+|+ .+|..++++++.=+-..||-+||-..+.
T Consensus 5 ~eehe~iLnkL~dpEl~~sErTeaLqqlr~~ygSf~sEy~elT~a~e 51 (101)
T PHA00489 5 LEEHEAILNKLGDPELTESERTEALQQLRESYGSFHSEYEELTEALE 51 (101)
T ss_pred HHHHHHHHHHcCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566655 4899999999999999999999977653
No 85
>PRK00106 hypothetical protein; Provisional
Probab=27.70 E-value=3.9e+02 Score=22.80 Aligned_cols=53 Identities=17% Similarity=0.404 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHH
Q psy2822 7 RLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKE 59 (78)
Q Consensus 7 RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIEN 59 (78)
||..++..|+++...+....++=.....+|.....-++-....+.-+.....+
T Consensus 105 rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~ 157 (535)
T PRK00106 105 RLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKA 157 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 86
>PRK03918 chromosome segregation protein; Provisional
Probab=27.66 E-value=3.6e+02 Score=22.49 Aligned_cols=6 Identities=50% Similarity=0.828 Sum_probs=2.1
Q ss_pred HHHHHh
Q psy2822 34 AELQEM 39 (78)
Q Consensus 34 ~El~eL 39 (78)
.++..+
T Consensus 214 ~e~~~l 219 (880)
T PRK03918 214 SELPEL 219 (880)
T ss_pred HHHHHH
Confidence 333333
No 87
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.27 E-value=1.9e+02 Score=19.10 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhh
Q psy2822 7 RLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDH 42 (78)
Q Consensus 7 RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~ 42 (78)
++.+-++.+..-.+++.+++++-..+..||..|++-
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 344555555556666667777777888888888764
No 88
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=26.78 E-value=2.3e+02 Score=19.93 Aligned_cols=50 Identities=16% Similarity=0.379 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHH
Q psy2822 4 LRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEK 60 (78)
Q Consensus 4 LR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL 60 (78)
|+.++..-+..|..|...+..++ .|+.-|.=++.+=+-++.-|+.-...|
T Consensus 128 L~~~~~~l~~~l~ek~k~~e~l~-------DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 128 LEEKIKDLEEELKEKNKANEILQ-------DELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433 333333333444444444444444443
No 89
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=26.74 E-value=93 Score=24.60 Aligned_cols=17 Identities=41% Similarity=0.448 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2822 8 LEEKNRHIEKKTQTALT 24 (78)
Q Consensus 8 LEEKe~~l~KKtq~~~~ 24 (78)
.+||+.+|.++|++...
T Consensus 150 ~~ekd~~i~~~~~~~e~ 166 (264)
T PF07246_consen 150 AEEKDQLIKEKTQEREN 166 (264)
T ss_pred HHHHHHHHHHHhhchhh
Confidence 37788888887776544
No 90
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=26.72 E-value=2.4e+02 Score=20.03 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHH
Q psy2822 20 QTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEK 60 (78)
Q Consensus 20 q~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL 60 (78)
.++..++.+.+++.+||..++.--+.=++..--.|.+|..|
T Consensus 59 ~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 59 EELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666555543333333333344444444
No 91
>KOG0804|consensus
Probab=26.55 E-value=4.3e+02 Score=22.94 Aligned_cols=53 Identities=25% Similarity=0.317 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHHHH
Q psy2822 13 RHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKKKK 65 (78)
Q Consensus 13 ~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~~~ 65 (78)
+.|+---++...+.++...+.++.+++...-++=+|+.--+|-|+.-+++..+
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~ 399 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELK 399 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666667777777788888888888888888888888888888888877654
No 92
>KOG0728|consensus
Probab=26.51 E-value=2e+02 Score=24.05 Aligned_cols=38 Identities=18% Similarity=0.413 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhh
Q psy2822 6 SRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHM 43 (78)
Q Consensus 6 ~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~l 43 (78)
..+++=+..+..||+-+..+.+.+|.+++-..-|++-+
T Consensus 24 ~ki~~~~~~v~~kt~nlrrleaqrneln~kvr~lreel 61 (404)
T KOG0728|consen 24 QKIEELQLQVAEKTQNLRRLEAQRNELNAKVRLLREEL 61 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 56788889999999999999999999888887777754
No 93
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=25.94 E-value=2.1e+02 Score=20.23 Aligned_cols=40 Identities=20% Similarity=0.418 Sum_probs=26.5
Q ss_pred HHHHHHhHhHHHHHH-hHhhhhhhHHHHHHhHHHHHHHHHH
Q psy2822 24 TATQEKNKMQAELQE-MKDHMDIKDRKINVLQRKEKEKKKK 63 (78)
Q Consensus 24 ~~~~EK~~~~~El~e-LkD~lDiKdRKInVLQrKIENL~~~ 63 (78)
++++.+..+..||.= +...++-=+.-|.-|++++++|+.+
T Consensus 50 dl~~Aq~~l~~EI~P~I~~Ll~k~e~~l~kL~Rr~~tL~ak 90 (153)
T PF08287_consen 50 DLQAAQQSLRDEIEPQINHLLDKAEKHLEKLQRREETLKAK 90 (153)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777788763 4444566666677777777777654
No 94
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=25.15 E-value=2.8e+02 Score=22.66 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhh
Q psy2822 2 EELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDH 42 (78)
Q Consensus 2 eaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~ 42 (78)
+++..||..-+.+..|-..++.++.+....+..||..|...
T Consensus 304 ~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~ 344 (563)
T TIGR00634 304 NEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDS 344 (563)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 56777777777777777777888888888888888877665
No 95
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=24.86 E-value=1.8e+02 Score=18.11 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=15.5
Q ss_pred HHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHh
Q psy2822 21 TALTATQEKNKMQAELQEMKDHMDIKDRKINVL 53 (78)
Q Consensus 21 ~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVL 53 (78)
.+.++.++-..+..++..+.+.+++=+.-+..|
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444555555555544444444433
No 96
>PRK12705 hypothetical protein; Provisional
Probab=24.59 E-value=4.3e+02 Score=22.34 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2822 7 RLEEKNRHIEKKTQTALTATQE 28 (78)
Q Consensus 7 RLEEKe~~l~KKtq~~~~~~~E 28 (78)
||..++..|+.+...+.....+
T Consensus 85 rl~~~e~~l~~~~~~l~~~~~~ 106 (508)
T PRK12705 85 RLVQKEEQLDARAEKLDNLENQ 106 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 97
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=24.58 E-value=3.5e+02 Score=21.31 Aligned_cols=50 Identities=22% Similarity=0.459 Sum_probs=31.0
Q ss_pred ChHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHH
Q psy2822 1 VEELRSRLEEKNRHI-------EKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKI 50 (78)
Q Consensus 1 VeaLR~RLEEKe~~l-------~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKI 50 (78)
||-|.-.||+-+..+ +.|...+..+-..-..+..|+.+|++.|.-.|.-|
T Consensus 114 vd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli 170 (302)
T PF09738_consen 114 VDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELI 170 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777766544 34444444444555577788888888876655554
No 98
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=24.57 E-value=1e+02 Score=25.57 Aligned_cols=29 Identities=24% Similarity=0.452 Sum_probs=24.5
Q ss_pred HHHHHHHhHhHHHHHHhHhhhhhhHHHHH
Q psy2822 23 LTATQEKNKMQAELQEMKDHMDIKDRKIN 51 (78)
Q Consensus 23 ~~~~~EK~~~~~El~eLkD~lDiKdRKIn 51 (78)
.+--+|+.-++|||.-|+|-|-|-+|--.
T Consensus 111 KqWLEERR~lQgEmQ~LrDKLAiaERtAk 139 (351)
T PF07058_consen 111 KQWLEERRFLQGEMQQLRDKLAIAERTAK 139 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999654
No 99
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.26 E-value=78 Score=23.16 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHH
Q psy2822 10 EKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKI 50 (78)
Q Consensus 10 EKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKI 50 (78)
|++.||+-==+.-..|..+=.+|--|+.|||-=+.|.+|.-
T Consensus 14 ERnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl~V~ek~~ 54 (166)
T PF04880_consen 14 ERNALLESELDEKENLREEVQRLKDELRDLKQELIVQEKLR 54 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHCH---------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555543333333344444455566666666666666653
No 100
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=23.97 E-value=4.4e+02 Score=22.15 Aligned_cols=46 Identities=9% Similarity=0.262 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHH
Q psy2822 6 SRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKIN 51 (78)
Q Consensus 6 ~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKIn 51 (78)
.||..=..-|......+.....+...+..+|.++..-++-=+.-|-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~ 83 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLI 83 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666667777888888888888888888888888766555554443
No 101
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=23.88 E-value=3.9e+02 Score=23.37 Aligned_cols=40 Identities=15% Similarity=0.345 Sum_probs=34.8
Q ss_pred HHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHH
Q psy2822 24 TATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKK 63 (78)
Q Consensus 24 ~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~ 63 (78)
.++.|-..+..||.+|+..|.=..+-.+++-..+..++++
T Consensus 431 kl~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ik~k 470 (738)
T TIGR01061 431 ELKEEQNELEKKIISLEQIIASEKARNKLLKKQLEEYKKQ 470 (738)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 6677888899999999999999999999998888888765
No 102
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=23.84 E-value=2.9e+02 Score=20.06 Aligned_cols=62 Identities=21% Similarity=0.373 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHH
Q psy2822 2 EELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKK 63 (78)
Q Consensus 2 eaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~ 63 (78)
|....|++.-+..|......+.++-++=..+..-|..|-+-||--+-.+...+.+++++.+.
T Consensus 11 d~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~ 72 (237)
T PF00261_consen 11 DEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKR 72 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666667777767777777777766666666566666666665543
No 103
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=23.62 E-value=4.4e+02 Score=22.02 Aligned_cols=63 Identities=22% Similarity=0.299 Sum_probs=46.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHH-HHHH
Q psy2822 1 VEELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKE-KKKK 63 (78)
Q Consensus 1 VeaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIEN-L~~~ 63 (78)
||-|=..|+.|-++.++=...+..+++-+..+..|+.++.-.||.==-..-.||.-||. +++.
T Consensus 434 vdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~ISk~ 497 (507)
T PF05600_consen 434 VDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEADISKR 497 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777777777777777788888888888888766667778888876 5554
No 104
>smart00338 BRLZ basic region leucin zipper.
Probab=23.58 E-value=1.6e+02 Score=17.12 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhh
Q psy2822 14 HIEKKTQTALTATQEKNKMQAELQEMKDHMDI 45 (78)
Q Consensus 14 ~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDi 45 (78)
...+|.+.+.++..+-..+.+|..+|...++.
T Consensus 20 ~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~ 51 (65)
T smart00338 20 SRERKKAEIEELERKVEQLEAENERLKKEIER 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888887777888888777765544
No 105
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=23.32 E-value=66 Score=19.33 Aligned_cols=22 Identities=23% Similarity=0.635 Sum_probs=14.4
Q ss_pred HHHhHhHHHHHHhHhhhhhhHHH
Q psy2822 27 QEKNKMQAELQEMKDHMDIKDRK 49 (78)
Q Consensus 27 ~EK~~~~~El~eLkD~lDiKdRK 49 (78)
+++..+..||+-|+..++. +|-
T Consensus 2 ~~~~~l~~ei~~L~~el~~-~r~ 23 (68)
T PF00631_consen 2 QEKDQLKREIEQLRQELER-ERI 23 (68)
T ss_dssp THHHHHHHHHHHHHHHHTS----
T ss_pred hHHHHHHHHHHHHHHHHcc-cce
Confidence 3455677888888888888 553
No 106
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=23.24 E-value=3.2e+02 Score=20.39 Aligned_cols=6 Identities=17% Similarity=0.816 Sum_probs=2.1
Q ss_pred HHHhHh
Q psy2822 36 LQEMKD 41 (78)
Q Consensus 36 l~eLkD 41 (78)
+..|.+
T Consensus 245 ~~~L~e 250 (297)
T PF02841_consen 245 IKQLKE 250 (297)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 107
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=23.03 E-value=2.8e+02 Score=19.54 Aligned_cols=16 Identities=6% Similarity=0.511 Sum_probs=5.8
Q ss_pred HHHhHhhhhhhHHHHH
Q psy2822 36 LQEMKDHMDIKDRKIN 51 (78)
Q Consensus 36 l~eLkD~lDiKdRKIn 51 (78)
+..++..++..-..|.
T Consensus 79 i~~~~~~i~~~r~~l~ 94 (302)
T PF10186_consen 79 IERLRKRIEQKRERLE 94 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 108
>PRK11546 zraP zinc resistance protein; Provisional
Probab=22.90 E-value=2.9e+02 Score=19.78 Aligned_cols=30 Identities=13% Similarity=0.198 Sum_probs=14.5
Q ss_pred HHHHHHhHhhhhhhHHHHHHhHHHHHHHHH
Q psy2822 33 QAELQEMKDHMDIKDRKINVLQRKEKEKKK 62 (78)
Q Consensus 33 ~~El~eLkD~lDiKdRKInVLQrKIENL~~ 62 (78)
..||+-|=..-...+-+|+.|.+.|..|+.
T Consensus 74 r~ELnALl~~~~pD~~kI~aL~kEI~~Lr~ 103 (143)
T PRK11546 74 RYEYNALLTANPPDSSKINAVAKEMENLRQ 103 (143)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 344444433344444555555555555553
No 109
>PF09903 DUF2130: Uncharacterized protein conserved in bacteria (DUF2130); InterPro: IPR019219 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=22.27 E-value=2.9e+02 Score=21.14 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2822 2 EELRSRLEEKNRHIEKKTQTALTAT 26 (78)
Q Consensus 2 eaLR~RLEEKe~~l~KKtq~~~~~~ 26 (78)
+++.+.+.+++..|.....++.++.
T Consensus 2 ~~~~~~~~e~e~~i~~~~~~Ie~lk 26 (267)
T PF09903_consen 2 EELKLKIKEKEEQIKDLEEQIEELK 26 (267)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888877777
No 110
>KOG2391|consensus
Probab=22.09 E-value=4.3e+02 Score=22.06 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=15.6
Q ss_pred HHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHH
Q psy2822 25 ATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKE 59 (78)
Q Consensus 25 ~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIEN 59 (78)
+.+++.++..++..|....||=.+|+..-+.+.||
T Consensus 251 L~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 251 LVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 34444444444444444444444444443333333
No 111
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=21.97 E-value=2.9e+02 Score=19.29 Aligned_cols=10 Identities=20% Similarity=0.225 Sum_probs=4.3
Q ss_pred HHHhHHHHHH
Q psy2822 50 INVLQRKEKE 59 (78)
Q Consensus 50 InVLQrKIEN 59 (78)
|+-|.-.||+
T Consensus 140 i~~lr~~iE~ 149 (177)
T PF07798_consen 140 IANLRTEIES 149 (177)
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 112
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=21.84 E-value=4.2e+02 Score=21.22 Aligned_cols=42 Identities=19% Similarity=0.391 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhh
Q psy2822 3 ELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMD 44 (78)
Q Consensus 3 aLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lD 44 (78)
++|...-+..+..+.-..++.++-+.++.+.+.+++|.+-.+
T Consensus 52 E~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~ 93 (294)
T COG1340 52 ELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYR 93 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666667777788888877777777766533
No 113
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=21.80 E-value=2.7e+02 Score=24.39 Aligned_cols=40 Identities=13% Similarity=0.338 Sum_probs=35.0
Q ss_pred HHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHH
Q psy2822 24 TATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKK 63 (78)
Q Consensus 24 ~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~ 63 (78)
.+..|-..+..||.+|...|.=.++-.+++-..+..++++
T Consensus 431 kl~~e~~~l~~ei~~l~~iL~~~~~l~~vi~~EL~eikkk 470 (800)
T TIGR01063 431 KLQEEYKELLELIADLEDILASEERVLEIIREELEEIKEQ 470 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 5677888899999999999999999999998888888765
No 114
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=21.80 E-value=6.1e+02 Score=23.05 Aligned_cols=64 Identities=16% Similarity=0.369 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHHHH
Q psy2822 2 EELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKKKK 65 (78)
Q Consensus 2 eaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~~~ 65 (78)
++||.+++.=+..|..-.....++...-.....++..++..+.--.......+..+++|+....
T Consensus 603 e~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 666 (1201)
T PF12128_consen 603 EELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNERE 666 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4677777777777766666655655555566777777777777666666666666666665543
No 115
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=21.68 E-value=1.1e+02 Score=21.78 Aligned_cols=22 Identities=36% Similarity=0.371 Sum_probs=16.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q psy2822 48 RKINVLQRKEKEKKKKKKKKKK 69 (78)
Q Consensus 48 RKInVLQrKIENL~~~~~~~~~ 69 (78)
=-|-+||.||+||..=++-=++
T Consensus 113 ~eIe~Lq~Ki~~LKeiR~hLk~ 134 (145)
T PF12548_consen 113 HEIETLQDKIKNLKEIRGHLKK 134 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3488899999999887654443
No 116
>KOG4552|consensus
Probab=21.61 E-value=2.8e+02 Score=22.19 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHH
Q psy2822 20 QTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKE 59 (78)
Q Consensus 20 q~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIEN 59 (78)
+.++.++.|-.....+|.-|..+++..|+-|.-||+-+.+
T Consensus 60 ~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~ 99 (272)
T KOG4552|consen 60 KTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKS 99 (272)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456677777788889999999999999999999986543
No 117
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=21.60 E-value=4e+02 Score=21.64 Aligned_cols=60 Identities=17% Similarity=0.357 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHH
Q psy2822 3 ELRSRLEEKNRHIEKKTQTALTATQ--EKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKK 62 (78)
Q Consensus 3 aLR~RLEEKe~~l~KKtq~~~~~~~--EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~ 62 (78)
-++.||++=+.+|..=...+-.+.- .-..+..++..|..++..=.++|.+|+.=++.|..
T Consensus 167 L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~ 228 (475)
T PF10359_consen 167 LIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLED 228 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677888777777766665555432 22234466666666666666667777766666654
No 118
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=21.57 E-value=4.8e+02 Score=22.83 Aligned_cols=40 Identities=15% Similarity=0.348 Sum_probs=33.5
Q ss_pred HHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHH
Q psy2822 24 TATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKK 63 (78)
Q Consensus 24 ~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~ 63 (78)
.+..|-..+..||.+|...|+-.++..+++-..+..++++
T Consensus 441 kl~~E~~~l~~ei~~l~~iL~s~~~l~~~i~~eL~~ik~k 480 (742)
T PRK05561 441 EIRKEQDELRKEIAELEAILASERKLRKLIKKELKADAKK 480 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 5677888889999999999999999988888877777654
No 119
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=21.53 E-value=3.8e+02 Score=20.62 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhh
Q psy2822 8 LEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDH 42 (78)
Q Consensus 8 LEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~ 42 (78)
++.-+.-+......+..+..+.+++.+||.++++.
T Consensus 40 ~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r 74 (239)
T COG1579 40 LEALNKALEALEIELEDLENQVSQLESEIQEIRER 74 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444555555555555555443
No 120
>KOG0976|consensus
Probab=21.53 E-value=5.2e+02 Score=24.72 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy2822 2 EELRSRLEEKNRHIEKKTQTAL 23 (78)
Q Consensus 2 eaLR~RLEEKe~~l~KKtq~~~ 23 (78)
|+++.||++=+.-|.-|+..|.
T Consensus 144 E~~~srlh~le~eLsAk~~eIf 165 (1265)
T KOG0976|consen 144 ENLNSRLHKLEDELSAKAHDIF 165 (1265)
T ss_pred HhhHHHHHHHHHHHhhhhHHHH
Confidence 4556666655554444444333
No 121
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.87 E-value=2.3e+02 Score=17.85 Aligned_cols=30 Identities=33% Similarity=0.581 Sum_probs=21.5
Q ss_pred HHHHhHhhhh-----hhHHHHHHhHHHHHHHHHHH
Q psy2822 35 ELQEMKDHMD-----IKDRKINVLQRKEKEKKKKK 64 (78)
Q Consensus 35 El~eLkD~lD-----iKdRKInVLQrKIENL~~~~ 64 (78)
||..|-..|+ |..||..++...|++|+++-
T Consensus 50 eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke 84 (100)
T PF01486_consen 50 ELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKE 84 (100)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555543 67888888888888888754
No 122
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=20.87 E-value=2.9e+02 Score=21.94 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=18.1
Q ss_pred hHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHH
Q psy2822 32 MQAELQEMKDHMDIKDRKINVLQRKEKEKKKK 63 (78)
Q Consensus 32 ~~~El~eLkD~lDiKdRKInVLQrKIENL~~~ 63 (78)
+.+.+.++.+-++--.+.|.-|+++|++|+..
T Consensus 72 l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~ 103 (301)
T PF06120_consen 72 LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQ 103 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555556666666666666544
No 123
>smart00340 HALZ homeobox associated leucin zipper.
Probab=20.84 E-value=1.2e+02 Score=18.42 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=15.9
Q ss_pred HHHHHHhHhHHHHHHhHhh
Q psy2822 24 TATQEKNKMQAELQEMKDH 42 (78)
Q Consensus 24 ~~~~EK~~~~~El~eLkD~ 42 (78)
.+++|-.++.-|+.||+..
T Consensus 16 ~LteeNrRL~ke~~eLral 34 (44)
T smart00340 16 SLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5778888999999999854
No 124
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=20.60 E-value=3e+02 Score=18.93 Aligned_cols=62 Identities=13% Similarity=0.293 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhh---hhhHHHHHHhHHHHHHHHHH
Q psy2822 2 EELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHM---DIKDRKINVLQRKEKEKKKK 63 (78)
Q Consensus 2 eaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~l---DiKdRKInVLQrKIENL~~~ 63 (78)
+.|...|--++.-+.-=..++..++++|..+..||-.|-.-. ....-.+..|+..+..|+.+
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555667777777877777776654333 33333445566666666653
No 125
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=20.30 E-value=3.8e+02 Score=20.12 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhh
Q psy2822 3 ELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDH 42 (78)
Q Consensus 3 aLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~ 42 (78)
.|+..|-.-+.-....+.++..++.|+..+..--.+|...
T Consensus 212 rL~~~l~~le~~~~~~~~~l~~l~~E~~~I~~re~elq~~ 251 (254)
T PF15458_consen 212 RLRESLSSLEDSKSQLQQQLESLEKEKEEIEEREKELQEL 251 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666655555555444
No 126
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.25 E-value=3.7e+02 Score=19.88 Aligned_cols=14 Identities=14% Similarity=0.285 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q psy2822 3 ELRSRLEEKNRHIE 16 (78)
Q Consensus 3 aLR~RLEEKe~~l~ 16 (78)
+|+..|.+=....+
T Consensus 104 ~l~~~l~~~~~~~~ 117 (206)
T PRK10884 104 TLTDKLNNIDNTWN 117 (206)
T ss_pred HHHHHHHHHHhHHH
Confidence 44444444433333
No 127
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=20.08 E-value=4.3e+02 Score=21.15 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhHhHHHHHHhHhhh
Q psy2822 19 TQTALTATQEKNKMQAELQEMKDHM 43 (78)
Q Consensus 19 tq~~~~~~~EK~~~~~El~eLkD~l 43 (78)
+..+++++.+=+.++.||+.++-.|
T Consensus 293 s~~V~~~t~~L~~IseeLe~vK~em 317 (359)
T PF10498_consen 293 SEGVSERTRELAEISEELEQVKQEM 317 (359)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333434444444444444433
Done!