Query psy2822
Match_columns 78
No_of_seqs 25 out of 27
Neff 2.6
Searched_HMMs 29240
Date Fri Aug 16 17:49:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmd_A CGMP dependent protein 86.2 2.5 8.4E-05 26.7 5.8 42 3-44 23-64 (72)
2 2v4h_A NF-kappa-B essential mo 78.3 6.6 0.00023 26.5 5.9 45 1-45 26-73 (110)
3 3mq7_A Bone marrow stromal ant 72.5 17 0.00058 25.0 6.8 33 31-63 75-107 (121)
4 1zxa_A CGMP-dependent protein 70.8 7.4 0.00025 24.1 4.3 36 9-44 14-49 (67)
5 1nkp_B MAX protein, MYC proto- 69.9 13 0.00046 22.1 5.3 35 10-44 37-71 (83)
6 3oja_B Anopheles plasmodium-re 69.5 32 0.0011 25.6 9.2 43 20-62 530-572 (597)
7 3tul_A Cell invasion protein S 69.2 9.9 0.00034 27.2 5.2 62 1-62 22-90 (158)
8 2fxo_A Myosin heavy chain, car 65.4 25 0.00084 22.7 6.2 34 18-51 67-100 (129)
9 3na7_A HP0958; flagellar bioge 64.3 34 0.0012 23.9 7.3 39 3-41 36-74 (256)
10 4emc_A Monopolin complex subun 60.3 31 0.0011 25.1 6.5 36 30-65 23-58 (190)
11 2wt7_B Transcription factor MA 60.1 22 0.00076 22.8 5.2 45 16-60 44-88 (90)
12 2dgc_A Protein (GCN4); basic d 59.2 25 0.00085 20.7 5.4 26 19-44 36-61 (63)
13 2dfs_A Myosin-5A; myosin-V, in 56.3 37 0.0013 29.2 7.2 10 2-11 931-940 (1080)
14 2xdj_A Uncharacterized protein 55.4 35 0.0012 21.3 8.1 56 4-59 4-59 (83)
15 1nkp_A C-MYC, MYC proto-oncoge 53.5 36 0.0012 20.9 5.9 44 10-60 42-85 (88)
16 3swk_A Vimentin; cytoskeleton, 52.4 17 0.00058 22.5 3.6 25 20-44 7-31 (86)
17 3vkg_A Dynein heavy chain, cyt 51.6 67 0.0023 31.3 8.7 55 1-55 1936-1990(3245)
18 3qh9_A Liprin-beta-2; coiled-c 51.0 46 0.0016 21.3 6.6 48 2-56 29-76 (81)
19 1am9_A Srebp-1A, protein (ster 45.4 48 0.0016 19.9 5.0 34 10-43 40-73 (82)
20 3s4r_A Vimentin; alpha-helix, 44.9 55 0.0019 20.4 8.0 55 8-62 28-84 (93)
21 3kqg_A Langerin, C-type lectin 44.2 15 0.00051 23.2 2.4 13 32-44 4-16 (182)
22 3hnw_A Uncharacterized protein 42.8 72 0.0025 21.2 9.1 48 14-61 83-130 (138)
23 3vkg_A Dynein heavy chain, cyt 41.1 1.8E+02 0.0061 28.6 9.7 61 5-65 2027-2087(3245)
24 3jsv_C NF-kappa-B essential mo 39.6 78 0.0027 20.7 5.9 45 1-45 4-51 (94)
25 1nlw_A MAD protein, MAX dimeri 38.2 66 0.0023 19.5 5.3 32 11-42 38-69 (80)
26 1lwu_A Fibrinogen alpha-1 chai 37.8 96 0.0033 21.2 5.9 47 2-48 25-71 (119)
27 3a7p_A Autophagy protein 16; c 36.5 1.1E+02 0.0037 21.4 6.3 41 20-60 68-108 (152)
28 1i84_S Smooth muscle myosin he 36.5 2E+02 0.0068 24.4 9.4 40 4-43 869-908 (1184)
29 4b6x_A AVRRPS4, avirulence pro 36.1 44 0.0015 21.9 3.7 29 2-30 25-53 (90)
30 3m48_A General control protein 35.1 58 0.002 17.9 4.0 21 24-44 11-31 (33)
31 3c3g_A Alpha/beta peptide with 35.0 59 0.002 17.9 4.1 21 24-44 11-31 (33)
32 3l4q_C Phosphatidylinositol 3- 35.0 1E+02 0.0036 21.6 5.8 45 1-45 12-56 (170)
33 3ghg_C Fibrinogen gamma chain; 34.5 1.4E+02 0.0049 23.5 7.0 33 30-62 101-133 (411)
34 1lrz_A FEMA, factor essential 34.4 1.1E+02 0.0039 22.4 6.1 44 20-63 247-296 (426)
35 1hlo_A Protein (transcription 34.4 72 0.0025 18.8 4.5 32 10-41 47-78 (80)
36 3mud_A DNA repair protein XRCC 34.0 78 0.0027 22.5 5.0 29 38-66 125-153 (175)
37 3hnw_A Uncharacterized protein 33.0 1.1E+02 0.0037 20.3 7.2 41 23-63 78-118 (138)
38 1zxa_A CGMP-dependent protein 31.9 89 0.003 19.1 4.7 43 2-44 14-56 (67)
39 4b4t_J 26S protease regulatory 31.6 90 0.0031 24.0 5.4 39 5-43 24-62 (405)
40 1dh3_A Transcription factor CR 31.4 75 0.0026 18.1 5.2 23 21-43 30-52 (55)
41 3ghg_A Fibrinogen alpha chain; 30.7 87 0.003 26.2 5.4 25 39-63 122-146 (562)
42 1m1j_C Fibrinogen gamma chain; 30.3 1.7E+02 0.0057 22.8 6.7 27 34-60 105-131 (409)
43 2eqb_B RAB guanine nucleotide 30.3 1.1E+02 0.0039 19.8 8.9 38 25-62 45-90 (97)
44 1fzc_A Fibrin; blood coagulati 30.2 78 0.0027 20.6 4.1 47 2-48 3-49 (87)
45 2ve7_A Kinetochore protein HEC 29.6 58 0.002 23.9 3.9 37 3-42 171-207 (315)
46 3na7_A HP0958; flagellar bioge 29.1 1.5E+02 0.005 20.7 8.1 44 20-63 32-75 (256)
47 3ol1_A Vimentin; structural ge 29.0 1.1E+02 0.0039 19.4 4.8 25 19-43 26-50 (119)
48 2oxj_A Hybrid alpha/beta pepti 28.5 80 0.0027 17.5 4.1 28 14-44 5-32 (34)
49 3ra3_A P1C; coiled coil domain 27.4 42 0.0014 17.8 2.0 19 43-61 9-27 (28)
50 3c3f_A Alpha/beta peptide with 27.3 85 0.0029 17.4 4.1 28 14-44 5-32 (34)
51 3s4r_A Vimentin; alpha-helix, 27.3 1.2E+02 0.0039 18.9 4.8 28 15-42 58-85 (93)
52 1jnm_A Proto-oncogene C-JUN; B 26.4 95 0.0032 17.6 5.6 11 17-27 19-29 (62)
53 3m9b_A Proteasome-associated A 26.1 86 0.0029 23.4 4.2 35 8-42 56-90 (251)
54 4dyl_A Tyrosine-protein kinase 25.7 1.4E+02 0.005 22.0 5.4 38 25-62 307-344 (406)
55 3nmd_A CGMP dependent protein 25.6 1.3E+02 0.0043 18.7 6.2 41 11-58 24-64 (72)
56 1uo4_A General control protein 25.5 92 0.0032 17.2 4.1 21 24-44 12-32 (34)
57 4h22_A Leucine-rich repeat fli 24.1 1.6E+02 0.0055 19.4 6.1 41 21-61 17-57 (103)
58 4etp_A Kinesin-like protein KA 23.9 2.4E+02 0.0081 21.3 8.0 24 24-47 21-44 (403)
59 2v66_B Nuclear distribution pr 23.7 1.6E+02 0.0055 19.3 6.6 42 23-64 6-51 (111)
60 1fxk_A Prefoldin; archaeal pro 22.8 1.3E+02 0.0043 17.8 5.3 7 34-40 79-85 (107)
61 3mtu_E Head morphogenesis prot 22.7 1.5E+02 0.0052 18.7 6.3 41 17-57 27-67 (77)
62 2j5u_A MREC protein; bacterial 22.7 48 0.0017 23.6 2.3 39 10-48 26-64 (255)
63 1l8d_A DNA double-strand break 22.4 1.4E+02 0.0046 18.0 6.3 33 26-58 70-102 (112)
64 1x79_B RAB GTPase binding effe 22.1 1.8E+02 0.0061 19.2 5.1 59 1-62 47-105 (112)
65 2wt7_A Proto-oncogene protein 22.0 1.2E+02 0.0041 17.3 5.6 26 16-41 19-44 (63)
66 2bni_A General control protein 22.0 1.1E+02 0.0038 16.8 4.0 21 24-44 12-32 (34)
67 1ud0_A HSC70, 70 kDa heat-shoc 21.7 1.4E+02 0.0047 17.8 4.9 37 26-62 31-68 (113)
68 3ni0_A Bone marrow stromal ant 21.7 1.8E+02 0.0062 19.2 5.8 13 31-43 71-83 (99)
69 1lwu_C Fibrinogen gamma chain; 21.4 2.7E+02 0.0091 21.0 6.4 30 32-61 24-53 (323)
70 2wq1_A General control protein 20.5 1.2E+02 0.0041 16.6 4.0 22 23-44 10-31 (33)
71 3i00_A HIP-I, huntingtin-inter 20.3 1.9E+02 0.0065 18.9 5.5 38 3-40 44-81 (120)
No 1
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=86.17 E-value=2.5 Score=26.70 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhh
Q psy2822 3 ELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMD 44 (78)
Q Consensus 3 aLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lD 44 (78)
.|..=|.+|.+.|..+-..|.++..+=....+||.+|+..+|
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666666666666666666666655
No 2
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=78.29 E-value=6.6 Score=26.54 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH---HHHHhHhhhhh
Q psy2822 1 VEELRSRLEEKNRHIEKKTQTALTATQEKNKMQA---ELQEMKDHMDI 45 (78)
Q Consensus 1 VeaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~---El~eLkD~lDi 45 (78)
|+.|..+|..-+..|..|...+..+.++-..... .|.-|+-++||
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~I 73 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADI 73 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999998887766655 56667777776
No 3
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=72.53 E-value=17 Score=25.03 Aligned_cols=33 Identities=9% Similarity=0.311 Sum_probs=25.4
Q ss_pred HhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHH
Q psy2822 31 KMQAELQEMKDHMDIKDRKINVLQRKEKEKKKK 63 (78)
Q Consensus 31 ~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~ 63 (78)
.+.+||..|+.+|.=..=.+.-|.+.++-|+-.
T Consensus 75 eLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 75 ELEGEITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 455899999988887777777788877776654
No 4
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=70.82 E-value=7.4 Score=24.06 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhh
Q psy2822 9 EEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMD 44 (78)
Q Consensus 9 EEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lD 44 (78)
|+...+|..|-.-|.+++.+=+.-..||.+|+.++|
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLH 49 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666776666666677777766654
No 5
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=69.87 E-value=13 Score=22.11 Aligned_cols=35 Identities=11% Similarity=0.257 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhh
Q psy2822 10 EKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMD 44 (78)
Q Consensus 10 EKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lD 44 (78)
.|-.+|..=..+|..++++-..+..|+.+|+....
T Consensus 37 sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~ 71 (83)
T 1nkp_B 37 SRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNA 71 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888889999999998899999888876543
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.52 E-value=32 Score=25.61 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHH
Q psy2822 20 QTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKK 62 (78)
Q Consensus 20 q~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~ 62 (78)
+++.+..++-..+..|+.+|...++.....+..+++.+.++..
T Consensus 530 ~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~ 572 (597)
T 3oja_B 530 TEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQ 572 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3333333444455566667777666666666666666665533
No 7
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=69.21 E-value=9.9 Score=27.24 Aligned_cols=62 Identities=21% Similarity=0.261 Sum_probs=47.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhh-------hhhhHHHHHHhHHHHHHHHH
Q psy2822 1 VEELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDH-------MDIKDRKINVLQRKEKEKKK 62 (78)
Q Consensus 1 VeaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~-------lDiKdRKInVLQrKIENL~~ 62 (78)
|+.|+.||.--..|++-..+...++..|=++..+|..+.-|. ++.-+-++.-|++|+.-++-
T Consensus 22 l~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~ 90 (158)
T 3tul_A 22 LSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQN 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999988888888877666554 45566777777777776654
No 8
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=65.42 E-value=25 Score=22.74 Aligned_cols=34 Identities=12% Similarity=0.224 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHH
Q psy2822 18 KTQTALTATQEKNKMQAELQEMKDHMDIKDRKIN 51 (78)
Q Consensus 18 Ktq~~~~~~~EK~~~~~El~eLkD~lDiKdRKIn 51 (78)
.......++..+..+.+.|.+|.+-++--+-..+
T Consensus 67 ~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~ 100 (129)
T 2fxo_A 67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNA 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555544444333
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=64.30 E-value=34 Score=23.94 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHh
Q psy2822 3 ELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKD 41 (78)
Q Consensus 3 aLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD 41 (78)
+|...+..-+..+..-...+.++..+...+.++|.+++.
T Consensus 36 ~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ 74 (256)
T 3na7_A 36 KALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNA 74 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444455555555555555544443
No 10
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=60.34 E-value=31 Score=25.11 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=31.5
Q ss_pred hHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHHHH
Q psy2822 30 NKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKKKK 65 (78)
Q Consensus 30 ~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~~~ 65 (78)
..+++|...|.+.|+.++=-|..||+++.+|...-+
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 467799999999999999999999999999887654
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=60.07 E-value=22 Score=22.84 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHH
Q psy2822 16 EKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEK 60 (78)
Q Consensus 16 ~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL 60 (78)
.++-++...+..+...+..|+..|+.-++-=-+=++.+..+.+.|
T Consensus 44 ~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 44 YKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466677777888888888888888777766666667777776665
No 12
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=59.16 E-value=25 Score=20.69 Aligned_cols=26 Identities=8% Similarity=0.170 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhHhHHHHHHhHhhhh
Q psy2822 19 TQTALTATQEKNKMQAELQEMKDHMD 44 (78)
Q Consensus 19 tq~~~~~~~EK~~~~~El~eLkD~lD 44 (78)
..+...+..+-..|.+|+..|+.+|.
T Consensus 36 e~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 36 EDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455566667777777777777653
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=56.34 E-value=37 Score=29.17 Aligned_cols=10 Identities=20% Similarity=0.611 Sum_probs=0.0
Q ss_pred hHHHHHHHHH
Q psy2822 2 EELRSRLEEK 11 (78)
Q Consensus 2 eaLR~RLEEK 11 (78)
.+|+.||++.
T Consensus 931 ~eLq~rL~~~ 940 (1080)
T 2dfs_A 931 MQLQRKIDEQ 940 (1080)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 4555666553
No 14
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=55.36 E-value=35 Score=21.27 Aligned_cols=56 Identities=13% Similarity=0.279 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHH
Q psy2822 4 LRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKE 59 (78)
Q Consensus 4 LR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIEN 59 (78)
+-.|+..=++++.--.+.+.+++.-=..+..||..|+-.++.-...|+-+++.-.+
T Consensus 4 ~e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 4 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44566666777777778888999988999999999999998888888877664333
No 15
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=53.54 E-value=36 Score=20.89 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHH
Q psy2822 10 EKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEK 60 (78)
Q Consensus 10 EKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL 60 (78)
.|-.+|.+=+.+|..++.+-..+..|+..|+.. ...|...|+.|
T Consensus 42 sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~-------n~~L~~rl~~L 85 (88)
T 1nkp_A 42 PKVVILKKATAYILSVQAEEQKLISEEDLLRKR-------REQLKHKLEQL 85 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHh
Confidence 366788899999999999999998888877643 44566666555
No 16
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=52.42 E-value=17 Score=22.52 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhHhHHHHHHhHhhhh
Q psy2822 20 QTALTATQEKNKMQAELQEMKDHMD 44 (78)
Q Consensus 20 q~~~~~~~EK~~~~~El~eLkD~lD 44 (78)
.|+..++.|++++..|+..+++.++
T Consensus 7 ~qi~~l~~e~~~l~~e~dn~~~~~e 31 (86)
T 3swk_A 7 RQVDQLTNDKARVEVERDNLAEDIM 31 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3566788888888888888877743
No 17
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=51.57 E-value=67 Score=31.33 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHH
Q psy2822 1 VEELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQR 55 (78)
Q Consensus 1 VeaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQr 55 (78)
|+.|+.-|++++-.|+.|++.+.++-++-...+.|.++-+..++..+.+++.-+.
T Consensus 1936 V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ 1990 (3245)
T 3vkg_A 1936 VKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNK 1990 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999998888776666555555655555555444444444333
No 18
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=50.96 E-value=46 Score=21.35 Aligned_cols=48 Identities=23% Similarity=0.439 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHH
Q psy2822 2 EELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRK 56 (78)
Q Consensus 2 eaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrK 56 (78)
-.||.|++|=+ +.+.|+=..+.+-| .||..|...|..+|==|.-||-.
T Consensus 29 ~~Lr~kv~elE---nErlQyEkKLKsTK----~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 29 RHLKIKVEELE---NERNQYEWKLKATK----AEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHhhhH----HHHHHHHHHHHhhHHHHHHHHHH
Confidence 46889988755 44555544444433 79999999999998876666654
No 19
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=45.44 E-value=48 Score=19.91 Aligned_cols=34 Identities=12% Similarity=0.160 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhh
Q psy2822 10 EKNRHIEKKTQTALTATQEKNKMQAELQEMKDHM 43 (78)
Q Consensus 10 EKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~l 43 (78)
+|-++|..=..+|..++.+-..+..|...|+..+
T Consensus 40 ~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 40 NKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888888999999988888888888887754
No 20
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=44.93 E-value=55 Score=20.43 Aligned_cols=55 Identities=11% Similarity=0.196 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHH
Q psy2822 8 LEEKNRHIEKKTQTALT--ATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKK 62 (78)
Q Consensus 8 LEEKe~~l~KKtq~~~~--~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~ 62 (78)
||.-|..|+-+-..+.+ .....+...+||.+|+..+|--..--.-|+-.|.||+.
T Consensus 28 LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~ 84 (93)
T 3s4r_A 28 LEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAE 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777766554432 12233456778888887776544444444545555543
No 21
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=44.21 E-value=15 Score=23.20 Aligned_cols=13 Identities=23% Similarity=0.672 Sum_probs=1.7
Q ss_pred hHHHHHHhHhhhh
Q psy2822 32 MQAELQEMKDHMD 44 (78)
Q Consensus 32 ~~~El~eLkD~lD 44 (78)
+++|+..|+.-++
T Consensus 4 l~~~~~~l~~~~~ 16 (182)
T 3kqg_A 4 LNAQIPELKSDLE 16 (182)
T ss_dssp ---------CHHH
T ss_pred hhhhHHHHHHHHH
Confidence 4455555554443
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=42.76 E-value=72 Score=21.20 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHH
Q psy2822 14 HIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKK 61 (78)
Q Consensus 14 ~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~ 61 (78)
.++..-..+..+-.+-....-++.++...++=-.+.|+.||+.|-.|+
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333344444444444443
No 23
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=41.07 E-value=1.8e+02 Score=28.57 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHHHH
Q psy2822 5 RSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKKKK 65 (78)
Q Consensus 5 R~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~~~ 65 (78)
..+|.+++..|..-...+.+++++=....+|...|.+.++.=.+|++.-++=|..|...+.
T Consensus 2027 ~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A 2027 KLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 4455555555665566666666666666667777777777777777777777777766554
No 24
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=39.64 E-value=78 Score=20.68 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=34.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH---HHHHHhHhhhhh
Q psy2822 1 VEELRSRLEEKNRHIEKKTQTALTATQEKNKMQ---AELQEMKDHMDI 45 (78)
Q Consensus 1 VeaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~---~El~eLkD~lDi 45 (78)
|+.|..+|..-+..|..|...|..+.++=.... ..|.-|+.+++|
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~I 51 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADI 51 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999998888877655544 455566776666
No 25
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=38.17 E-value=66 Score=19.45 Aligned_cols=32 Identities=6% Similarity=0.088 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhh
Q psy2822 11 KNRHIEKKTQTALTATQEKNKMQAELQEMKDH 42 (78)
Q Consensus 11 Ke~~l~KKtq~~~~~~~EK~~~~~El~eLkD~ 42 (78)
|-.+|.+=+.+|..++++-..+..|+..|+..
T Consensus 38 k~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e 69 (80)
T 1nlw_A 38 TLSLLTKAKLHIKKLEDSDRKAVHQIDQLQRE 69 (80)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788889999999999888888888777654
No 26
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=37.77 E-value=96 Score=21.17 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHH
Q psy2822 2 EELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDR 48 (78)
Q Consensus 2 eaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdR 48 (78)
++||.|+|-=.+-+.-+-+.+..++.-=..+..||--|-=-.|||=|
T Consensus 25 edLrrrIe~LkrKV~~Qvq~i~~Lq~nVrdQvveMkRLEVDIDIKiR 71 (119)
T 1lwu_A 25 RELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVEVDIDVALR 71 (119)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 57899999888888888888888887777788888877777788755
No 27
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=36.47 E-value=1.1e+02 Score=21.43 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHH
Q psy2822 20 QTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEK 60 (78)
Q Consensus 20 q~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL 60 (78)
+.+..++.+...+..+|.+|.+-+..|.+=+..|+--+..|
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aL 108 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISG 108 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666666555555555554444433
No 28
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=36.46 E-value=2e+02 Score=24.45 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhh
Q psy2822 4 LRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHM 43 (78)
Q Consensus 4 LR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~l 43 (78)
++.+|+.-+..+..=..++..+.++.+.+..++.+..+.+
T Consensus 869 l~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l 908 (1184)
T 1i84_S 869 TKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444334444444444444444444444333
No 29
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=36.10 E-value=44 Score=21.95 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2822 2 EELRSRLEEKNRHIEKKTQTALTATQEKN 30 (78)
Q Consensus 2 eaLR~RLEEKe~~l~KKtq~~~~~~~EK~ 30 (78)
.+||.-++.|..|++-=|+.++++..|=|
T Consensus 25 ~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaN 53 (90)
T 4b6x_A 25 AALRQEIEDKQLMVNNLTDELQDAIDEAN 53 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 47999999999999999999988876654
No 30
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=35.11 E-value=58 Score=17.90 Aligned_cols=21 Identities=10% Similarity=0.207 Sum_probs=17.6
Q ss_pred HHHHHHhHhHHHHHHhHhhhh
Q psy2822 24 TATQEKNKMQAELQEMKDHMD 44 (78)
Q Consensus 24 ~~~~EK~~~~~El~eLkD~lD 44 (78)
++-.+.+.+..|+.-|++.|.
T Consensus 11 eLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 11 ELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHHHHHHHHHHhh
Confidence 667788889999999998874
No 31
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=35.04 E-value=59 Score=17.92 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=17.4
Q ss_pred HHHHHHhHhHHHHHHhHhhhh
Q psy2822 24 TATQEKNKMQAELQEMKDHMD 44 (78)
Q Consensus 24 ~~~~EK~~~~~El~eLkD~lD 44 (78)
++-.+++.+..|+.-|+++|.
T Consensus 11 eLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 11 EIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 566788889999999998874
No 32
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=34.96 E-value=1e+02 Score=21.58 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhh
Q psy2822 1 VEELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDI 45 (78)
Q Consensus 1 VeaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDi 45 (78)
||++..+|.+=....-.|+..-..+.++=++.+.||.--+.+++.
T Consensus 12 ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieA 56 (170)
T 3l4q_C 12 VEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEA 56 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999988877664
No 33
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=34.51 E-value=1.4e+02 Score=23.47 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=26.6
Q ss_pred hHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHH
Q psy2822 30 NKMQAELQEMKDHMDIKDRKINVLQRKEKEKKK 62 (78)
Q Consensus 30 ~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~ 62 (78)
++..+.|.+|...++..+.+|+.|..+|..|..
T Consensus 101 ~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 101 LTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888999999999999988888877753
No 34
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=34.44 E-value=1.1e+02 Score=22.37 Aligned_cols=44 Identities=14% Similarity=0.270 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhHhHHHHHHhHhhhhhh------HHHHHHhHHHHHHHHHH
Q psy2822 20 QTALTATQEKNKMQAELQEMKDHMDIK------DRKINVLQRKEKEKKKK 63 (78)
Q Consensus 20 q~~~~~~~EK~~~~~El~eLkD~lDiK------dRKInVLQrKIENL~~~ 63 (78)
+.+..++++...+..++..+...++-. .+++..++..|++++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 296 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQK 296 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777776655422 46677777777776554
No 35
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=34.39 E-value=72 Score=18.78 Aligned_cols=32 Identities=13% Similarity=0.294 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHh
Q psy2822 10 EKNRHIEKKTQTALTATQEKNKMQAELQEMKD 41 (78)
Q Consensus 10 EKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD 41 (78)
.|-.+|..=..+|..++++-..+..|+..|+.
T Consensus 47 sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 47 SRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677788888888998888888888888764
No 36
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=34.03 E-value=78 Score=22.55 Aligned_cols=29 Identities=3% Similarity=-0.031 Sum_probs=24.5
Q ss_pred HhHhhhhhhHHHHHHhHHHHHHHHHHHHH
Q psy2822 38 EMKDHMDIKDRKINVLQRKEKEKKKKKKK 66 (78)
Q Consensus 38 eLkD~lDiKdRKInVLQrKIENL~~~~~~ 66 (78)
-++++++..+|-++-||+.|..|..+-..
T Consensus 125 ~ireli~~AertV~kLqkeiD~LEDeL~~ 153 (175)
T 3mud_A 125 VIRELICYCLDTTAKNEKSIDDLEEKVAH 153 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999876543
No 37
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=33.00 E-value=1.1e+02 Score=20.34 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=21.4
Q ss_pred HHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHH
Q psy2822 23 LTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKK 63 (78)
Q Consensus 23 ~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~ 63 (78)
..+.++-..+..|+.+|+..+---.-++..+.+.++.|+.+
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~ 118 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSE 118 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455666666666555555555555444444443
No 38
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=31.92 E-value=89 Score=19.08 Aligned_cols=43 Identities=14% Similarity=0.226 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhh
Q psy2822 2 EELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMD 44 (78)
Q Consensus 2 eaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lD 44 (78)
|.|..-|..|...|..=...+.+..++=..+.++|+-+.+.+.
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444445555555555444555555555555555555555543
No 39
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.64 E-value=90 Score=24.04 Aligned_cols=39 Identities=18% Similarity=0.382 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhh
Q psy2822 5 RSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHM 43 (78)
Q Consensus 5 R~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~l 43 (78)
..+++|-+..+..+++.+..+.++++.+..++..+++-+
T Consensus 24 ~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~ 62 (405)
T 4b4t_J 24 EQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDEL 62 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888888887777777666543
No 40
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=31.38 E-value=75 Score=18.06 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=12.1
Q ss_pred HHHHHHHHHhHhHHHHHHhHhhh
Q psy2822 21 TALTATQEKNKMQAELQEMKDHM 43 (78)
Q Consensus 21 ~~~~~~~EK~~~~~El~eLkD~l 43 (78)
+..++.+|-..+..++..|..++
T Consensus 30 ~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 30 RVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555544
No 41
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.74 E-value=87 Score=26.19 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=13.2
Q ss_pred hHhhhhhhHHHHHHhHHHHHHHHHH
Q psy2822 39 MKDHMDIKDRKINVLQRKEKEKKKK 63 (78)
Q Consensus 39 LkD~lDiKdRKInVLQrKIENL~~~ 63 (78)
|+.-+|-.--.|.|||.-|+++-.+
T Consensus 122 LKekVdnQlsnIrvLQsnLedq~~k 146 (562)
T 3ghg_A 122 LKRKVIEKVQHIQLLQKNVRAQLVD 146 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445556666666665443
No 42
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=30.34 E-value=1.7e+02 Score=22.80 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=17.0
Q ss_pred HHHHHhHhhhhhhHHHHHHhHHHHHHH
Q psy2822 34 AELQEMKDHMDIKDRKINVLQRKEKEK 60 (78)
Q Consensus 34 ~El~eLkD~lDiKdRKInVLQrKIENL 60 (78)
++|..|..+++.-+.+|..|+.+|..|
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 366667766666666666666655554
No 43
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=30.30 E-value=1.1e+02 Score=19.83 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=24.5
Q ss_pred HHHHHhHhHHHHHHhH--------hhhhhhHHHHHHhHHHHHHHHH
Q psy2822 25 ATQEKNKMQAELQEMK--------DHMDIKDRKINVLQRKEKEKKK 62 (78)
Q Consensus 25 ~~~EK~~~~~El~eLk--------D~lDiKdRKInVLQrKIENL~~ 62 (78)
+..++..+.+||.+|- .|+----|.-..++++.+.|+.
T Consensus 45 aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~ 90 (97)
T 2eqb_B 45 AEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTE 90 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788899998884 4444444444556666666654
No 44
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=30.16 E-value=78 Score=20.64 Aligned_cols=47 Identities=28% Similarity=0.391 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHH
Q psy2822 2 EELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDR 48 (78)
Q Consensus 2 eaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdR 48 (78)
++||.|+|-=.+-++-+-+.+..++.-=..+..||.-|-=-.|||=|
T Consensus 3 edLrrrI~~LkrkV~~q~~~i~~Lq~nvr~Q~vemkRLEVDIDIKiR 49 (87)
T 1fzc_A 3 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIR 49 (87)
T ss_dssp ------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 57888888877778888888888887777777888777777788754
No 45
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=29.63 E-value=58 Score=23.93 Aligned_cols=37 Identities=11% Similarity=0.235 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhh
Q psy2822 3 ELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDH 42 (78)
Q Consensus 3 aLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~ 42 (78)
++..+++... +-..+++..++++...+..||.+|...
T Consensus 171 e~~~~~~~~~---n~~~~eie~L~~~~~~L~eEi~~Le~~ 207 (315)
T 2ve7_A 171 ELQSKLKDLF---NVDAFKLESLEAKNRALNEQIARLEQE 207 (315)
T ss_dssp HHHHHHHHHH---TCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555444 223556777777777777777777543
No 46
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=29.12 E-value=1.5e+02 Score=20.66 Aligned_cols=44 Identities=7% Similarity=0.092 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHH
Q psy2822 20 QTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKK 63 (78)
Q Consensus 20 q~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~ 63 (78)
..+.++.++...+...+..+...++--++.|.-+...|+.+..+
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~r 75 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAK 75 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444433
No 47
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=28.97 E-value=1.1e+02 Score=19.44 Aligned_cols=25 Identities=12% Similarity=0.299 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhHhHHHHHHhHhhh
Q psy2822 19 TQTALTATQEKNKMQAELQEMKDHM 43 (78)
Q Consensus 19 tq~~~~~~~EK~~~~~El~eLkD~l 43 (78)
-.++-.++.|++++..||.-+++.+
T Consensus 26 R~qid~~~~e~a~l~leldn~~~~~ 50 (119)
T 3ol1_A 26 RRQVDQLTNDKARVEVERDNLAEDI 50 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777776666654
No 48
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=28.51 E-value=80 Score=17.46 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHhHhhhh
Q psy2822 14 HIEKKTQTALTATQEKNKMQAELQEMKDHMD 44 (78)
Q Consensus 14 ~l~KKtq~~~~~~~EK~~~~~El~eLkD~lD 44 (78)
+|+-|-. .+-++++.+..|..-|+++|.
T Consensus 5 QLE~kVE---eLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 5 QLEXKVX---ELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHH---HHHHhhhhHHHHHHHHHHHHh
Confidence 3444444 567788889999999998874
No 49
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=27.43 E-value=42 Score=17.85 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=13.9
Q ss_pred hhhhHHHHHHhHHHHHHHH
Q psy2822 43 MDIKDRKINVLQRKEKEKK 61 (78)
Q Consensus 43 lDiKdRKInVLQrKIENL~ 61 (78)
.|.=+.||..|..||-+|.
T Consensus 9 ndaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 9 NDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhc
Confidence 4455678888888888774
No 50
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=27.30 E-value=85 Score=17.36 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHhHhhhh
Q psy2822 14 HIEKKTQTALTATQEKNKMQAELQEMKDHMD 44 (78)
Q Consensus 14 ~l~KKtq~~~~~~~EK~~~~~El~eLkD~lD 44 (78)
+|+-|-. ++-.+++.+..|..-|+++|.
T Consensus 5 QLEdKVE---eLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 5 QIEXKLE---XILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH---HHHhhhhHHHHHHHHHHHHHh
Confidence 3444444 566788889999999998864
No 51
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=27.27 E-value=1.2e+02 Score=18.89 Aligned_cols=28 Identities=11% Similarity=0.261 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHhHhh
Q psy2822 15 IEKKTQTALTATQEKNKMQAELQEMKDH 42 (78)
Q Consensus 15 l~KKtq~~~~~~~EK~~~~~El~eLkD~ 42 (78)
|+.=-.++.+++.|++++..|+..|.+.
T Consensus 58 i~~Lr~~i~~~~~ek~~l~~e~dnl~~~ 85 (93)
T 3s4r_A 58 MRELRRQVDQLTNDKARVEVERDNLAED 85 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455666777777777777666554
No 52
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=26.42 E-value=95 Score=17.61 Aligned_cols=11 Identities=9% Similarity=0.132 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q psy2822 17 KKTQTALTATQ 27 (78)
Q Consensus 17 KKtq~~~~~~~ 27 (78)
+|.+.+.++..
T Consensus 19 rKk~~~~~Le~ 29 (62)
T 1jnm_A 19 RKLERIARLEE 29 (62)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 53
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=26.07 E-value=86 Score=23.42 Aligned_cols=35 Identities=6% Similarity=0.186 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhh
Q psy2822 8 LEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDH 42 (78)
Q Consensus 8 LEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~ 42 (78)
+.+.++.++.-+.+...+.++-..+..||..|++.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeE 90 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREE 90 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333333444444444444444433
No 54
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=25.71 E-value=1.4e+02 Score=22.01 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=28.2
Q ss_pred HHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHH
Q psy2822 25 ATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKK 62 (78)
Q Consensus 25 ~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~ 62 (78)
++.-=.++.++|.+++..++-|.|-+..|++.+++-+.
T Consensus 307 lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~ 344 (406)
T 4dyl_A 307 VQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEE 344 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344567788888888888888888888888876543
No 55
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=25.57 E-value=1.3e+02 Score=18.74 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHH
Q psy2822 11 KNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEK 58 (78)
Q Consensus 11 Ke~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIE 58 (78)
=+..|.+|..++.+.. +-|.+|...|+-+|.=|.-||..+-
T Consensus 24 Lq~~L~~K~eELr~kd-------~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 24 LQYALQEKIEELRQRD-------ALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544443 3355555555555555555555443
No 56
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=25.48 E-value=92 Score=17.18 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=16.8
Q ss_pred HHHHHHhHhHHHHHHhHhhhh
Q psy2822 24 TATQEKNKMQAELQEMKDHMD 44 (78)
Q Consensus 24 ~~~~EK~~~~~El~eLkD~lD 44 (78)
++-.+++.+..|+.-|+..|.
T Consensus 12 eLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 12 EILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHHc
Confidence 566677888899999998774
No 57
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=24.09 E-value=1.6e+02 Score=19.44 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=25.3
Q ss_pred HHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHH
Q psy2822 21 TALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKK 61 (78)
Q Consensus 21 ~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~ 61 (78)
+.-|+--||+.+.=++.-|+|.|+--+==..-++|..+...
T Consensus 17 snAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~ 57 (103)
T 4h22_A 17 SNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKN 57 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777776655555555555544443
No 58
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.86 E-value=2.4e+02 Score=21.32 Aligned_cols=24 Identities=4% Similarity=0.189 Sum_probs=11.2
Q ss_pred HHHHHHhHhHHHHHHhHhhhhhhH
Q psy2822 24 TATQEKNKMQAELQEMKDHMDIKD 47 (78)
Q Consensus 24 ~~~~EK~~~~~El~eLkD~lDiKd 47 (78)
++.++-..+..|+.+|.+.+--.+
T Consensus 21 ~l~~~~~~~~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 21 ALKEKIKDTELGMKELNEILIKEE 44 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344455555555544433
No 59
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=23.68 E-value=1.6e+02 Score=19.34 Aligned_cols=42 Identities=12% Similarity=0.323 Sum_probs=23.0
Q ss_pred HHHHHHHhHhHHHHHHhHhhhhhhHH----HHHHhHHHHHHHHHHH
Q psy2822 23 LTATQEKNKMQAELQEMKDHMDIKDR----KINVLQRKEKEKKKKK 64 (78)
Q Consensus 23 ~~~~~EK~~~~~El~eLkD~lDiKdR----KInVLQrKIENL~~~~ 64 (78)
.++...-+++..|+..+++-+.--.. -|+.||+.|..|...+
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~ 51 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIK 51 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666665544432 3555666666665443
No 60
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.84 E-value=1.3e+02 Score=17.79 Aligned_cols=7 Identities=0% Similarity=0.074 Sum_probs=2.6
Q ss_pred HHHHHhH
Q psy2822 34 AELQEMK 40 (78)
Q Consensus 34 ~El~eLk 40 (78)
.+|..|.
T Consensus 79 ~~i~~le 85 (107)
T 1fxk_A 79 LREKTIE 85 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 61
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=22.75 E-value=1.5e+02 Score=18.69 Aligned_cols=41 Identities=5% Similarity=0.099 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHH
Q psy2822 17 KKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKE 57 (78)
Q Consensus 17 KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKI 57 (78)
..|..++++.++-+....+|.+|-|-+-...-+.-.+++.+
T Consensus 27 ~~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeL 67 (77)
T 3mtu_E 27 ERTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQML 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 46899999999999999999999998866665555555543
No 62
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=22.73 E-value=48 Score=23.58 Aligned_cols=39 Identities=21% Similarity=0.450 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHH
Q psy2822 10 EKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDR 48 (78)
Q Consensus 10 EKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdR 48 (78)
+-|..|...-.++....++-..+..|...|+++|++++.
T Consensus 26 ~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~~~~ 64 (255)
T 2j5u_A 26 TENQHLKERLEELAQLESEVADLKKENKDLKESLDITDS 64 (255)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 334444455455555555555666788888888887653
No 63
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.38 E-value=1.4e+02 Score=17.98 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=15.9
Q ss_pred HHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHH
Q psy2822 26 TQEKNKMQAELQEMKDHMDIKDRKINVLQRKEK 58 (78)
Q Consensus 26 ~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIE 58 (78)
.++-..+..+|.+|++.+..-++.+..|...+.
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445555555555555555555544443
No 64
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=22.07 E-value=1.8e+02 Score=19.24 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHH
Q psy2822 1 VEELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKK 62 (78)
Q Consensus 1 VeaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~ 62 (78)
|..|+.+...=|.+|..=.+...++. +....+|+.|-+.-.==-..++.||+..++|+-
T Consensus 47 V~~L~~~~q~sE~~L~~Lqq~fsq~q---~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~G 105 (112)
T 1x79_B 47 ISALVLRAQASEILLEELQQGLSQAK---RDVQEQMAVLMQSREQVSEELVRLQKDNDSLQG 105 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 34555666665665555444333333 333344444433222222345667777777764
No 65
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=22.03 E-value=1.2e+02 Score=17.30 Aligned_cols=26 Identities=12% Similarity=0.281 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHhHh
Q psy2822 16 EKKTQTALTATQEKNKMQAELQEMKD 41 (78)
Q Consensus 16 ~KKtq~~~~~~~EK~~~~~El~eLkD 41 (78)
.+|.+.+.+++++-..+.++-..|..
T Consensus 19 ~rKk~~~~~Le~~v~~L~~~n~~L~~ 44 (63)
T 2wt7_A 19 NRRRELTDTLQAETDQLEDEKSALQT 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666655555555555544
No 66
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=21.95 E-value=1.1e+02 Score=16.85 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=16.5
Q ss_pred HHHHHHhHhHHHHHHhHhhhh
Q psy2822 24 TATQEKNKMQAELQEMKDHMD 44 (78)
Q Consensus 24 ~~~~EK~~~~~El~eLkD~lD 44 (78)
++-.+++.+..|+.-|+++|.
T Consensus 12 eLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 12 EILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHccHHHHHHHHHHHHHhc
Confidence 566778888999999998864
No 67
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=21.73 E-value=1.4e+02 Score=17.84 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=23.5
Q ss_pred HHHHhHhHHHHHHhHhhhhhhH-HHHHHhHHHHHHHHH
Q psy2822 26 TQEKNKMQAELQEMKDHMDIKD-RKINVLQRKEKEKKK 62 (78)
Q Consensus 26 ~~EK~~~~~El~eLkD~lDiKd-RKInVLQrKIENL~~ 62 (78)
.+++..+...|.+|++.|+--+ --+..+..+++.|+.
T Consensus 31 ~~ek~~i~~~i~~l~~~L~~~~~ad~~~i~~~~~~L~~ 68 (113)
T 1ud0_A 31 DEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEK 68 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH
Confidence 4567888888888888886221 123456666666654
No 68
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=21.73 E-value=1.8e+02 Score=19.24 Aligned_cols=13 Identities=8% Similarity=0.506 Sum_probs=7.2
Q ss_pred HhHHHHHHhHhhh
Q psy2822 31 KMQAELQEMKDHM 43 (78)
Q Consensus 31 ~~~~El~eLkD~l 43 (78)
.+.+||..|+.+|
T Consensus 71 elqgEI~~Lnq~L 83 (99)
T 3ni0_A 71 ELENEVTKLNQEL 83 (99)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3446666666544
No 69
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.40 E-value=2.7e+02 Score=21.01 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=19.1
Q ss_pred hHHHHHHhHhhhhhhHHHHHHhHHHHHHHH
Q psy2822 32 MQAELQEMKDHMDIKDRKINVLQRKEKEKK 61 (78)
Q Consensus 32 ~~~El~eLkD~lDiKdRKInVLQrKIENL~ 61 (78)
..++|..|..+++.-+-+|.-|+.+|-.|.
T Consensus 24 ~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 24 HDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666667777776666554
No 70
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=20.50 E-value=1.2e+02 Score=16.64 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=17.0
Q ss_pred HHHHHHHhHhHHHHHHhHhhhh
Q psy2822 23 LTATQEKNKMQAELQEMKDHMD 44 (78)
Q Consensus 23 ~~~~~EK~~~~~El~eLkD~lD 44 (78)
.++..+++.+..|+.-|+.++.
T Consensus 10 Eell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 10 EENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhc
Confidence 3667778888899988887763
No 71
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=20.29 E-value=1.9e+02 Score=18.93 Aligned_cols=38 Identities=18% Similarity=0.374 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhH
Q psy2822 3 ELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMK 40 (78)
Q Consensus 3 aLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLk 40 (78)
.|+.|+-+=+.-|+-.-...+.+..|-..+..|+.+++
T Consensus 44 ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 44 QLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443
Done!