Query psy2822
Match_columns 78
No_of_seqs 25 out of 27
Neff 2.6
Searched_HMMs 13730
Date Fri Aug 16 17:49:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2822.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2822hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a26a1 a.2.16.1 (A:1-47) Calc 58.6 12 0.00088 20.7 4.9 37 2-38 4-42 (47)
2 d1uklc_ a.38.1.1 (C:) SREBP-2 43.6 17 0.0012 19.4 3.8 34 11-44 24-57 (61)
3 d1nkpb_ a.38.1.1 (B:) Max prot 39.7 27 0.002 19.2 5.3 35 10-44 37-71 (83)
4 d1ydxa1 d.287.1.2 (A:1-193) Bi 35.3 35 0.0025 19.4 4.5 30 36-65 146-175 (193)
5 d1nkpa_ a.38.1.1 (A:) Myc prot 34.4 35 0.0025 18.9 5.9 34 11-44 43-76 (88)
6 d2ncda_ c.37.1.9 (A:) Kinesin 32.5 42 0.0031 22.8 5.3 39 2-40 6-44 (368)
7 d1urfa_ a.2.6.1 (A:) Protein k 28.6 51 0.0037 19.0 6.3 33 30-62 39-71 (81)
8 d2diia1 a.240.1.1 (A:8-55) TFI 27.2 12 0.00087 20.8 1.3 12 7-18 8-19 (48)
9 d1ab4a_ e.11.1.1 (A:) DNA Gyra 21.7 98 0.0072 22.1 5.8 41 23-63 443-483 (493)
10 d1nlwa_ a.38.1.1 (A:) Mad prot 20.7 63 0.0046 17.3 6.1 30 11-40 38-67 (79)
No 1
>d2a26a1 a.2.16.1 (A:1-47) Calcyclin-binding protein, CacyBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.63 E-value=12 Score=20.70 Aligned_cols=37 Identities=38% Similarity=0.486 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHhHHHHHH
Q psy2822 2 EELRSRLEEKNRHIEKKTQT--ALTATQEKNKMQAELQE 38 (78)
Q Consensus 2 eaLR~RLEEKe~~l~KKtq~--~~~~~~EK~~~~~El~e 38 (78)
++|+.-|||=..+|++=|-. -..++.|++.+.+||..
T Consensus 4 eElqkDLeEvk~LLekaTRkRvrd~Lt~Ek~kletEik~ 42 (47)
T d2a26a1 4 EELQKDLEEVKVLLEKATRKRVRDALTAEKSKIETEIKN 42 (47)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999987754 34578899999998864
No 2
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.60 E-value=17 Score=19.39 Aligned_cols=34 Identities=18% Similarity=0.073 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhh
Q psy2822 11 KNRHIEKKTQTALTATQEKNKMQAELQEMKDHMD 44 (78)
Q Consensus 11 Ke~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lD 44 (78)
|-++|.+=+++|..++.+-..+..|...|+..+.
T Consensus 24 Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~ 57 (61)
T d1uklc_ 24 KSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQ 57 (61)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578888899999999999999999988876553
No 3
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.70 E-value=27 Score=19.18 Aligned_cols=35 Identities=11% Similarity=0.257 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhh
Q psy2822 10 EKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMD 44 (78)
Q Consensus 10 EKe~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lD 44 (78)
.|-++|..=+.+|..++++-..+..|+..|+...+
T Consensus 37 sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~ 71 (83)
T d1nkpb_ 37 SRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNA 71 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888887788877777665443
No 4
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=35.27 E-value=35 Score=19.40 Aligned_cols=30 Identities=10% Similarity=0.236 Sum_probs=21.5
Q ss_pred HHHhHhhhhhhHHHHHHhHHHHHHHHHHHH
Q psy2822 36 LQEMKDHMDIKDRKINVLQRKEKEKKKKKK 65 (78)
Q Consensus 36 l~eLkD~lDiKdRKInVLQrKIENL~~~~~ 65 (78)
-..+=+.+|.=|..|+.+++.|+.|+.-+.
T Consensus 146 Q~~I~~~l~~ld~~i~~~~~~i~~l~~~~~ 175 (193)
T d1ydxa1 146 QHAIANTLSVFDERLENLASLIEINRKLRD 175 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445677778888888888888876553
No 5
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.35 E-value=35 Score=18.88 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhhhh
Q psy2822 11 KNRHIEKKTQTALTATQEKNKMQAELQEMKDHMD 44 (78)
Q Consensus 11 Ke~~l~KKtq~~~~~~~EK~~~~~El~eLkD~lD 44 (78)
|-.+|..=..+|..++++-..+..|+..|+..++
T Consensus 43 K~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~ 76 (88)
T d1nkpa_ 43 KVVILKKATAYILSVQAEEQKLISEEDLLRKRRE 76 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777766666666666654433
No 6
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=32.50 E-value=42 Score=22.76 Aligned_cols=39 Identities=15% Similarity=0.324 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhH
Q psy2822 2 EELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMK 40 (78)
Q Consensus 2 eaLR~RLEEKe~~l~KKtq~~~~~~~EK~~~~~El~eLk 40 (78)
++|-..+|.-...++-=+.|+.+...++..+..+|.|||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 44 (368)
T d2ncda_ 6 EELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 44 (368)
T ss_dssp GGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 445555555555555555555555666667777776665
No 7
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.63 E-value=51 Score=19.00 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=25.9
Q ss_pred hHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHH
Q psy2822 30 NKMQAELQEMKDHMDIKDRKINVLQRKEKEKKK 62 (78)
Q Consensus 30 ~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~ 62 (78)
..+.-.+.+-..++.--.+||..|+-.|+-+..
T Consensus 39 ~~DrK~l~eaq~~l~eS~~Ki~lLr~~L~~~~q 71 (81)
T d1urfa_ 39 TKDRKLLLTAQQMLQDSKTKIDIIRMQLRRALQ 71 (81)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677778899999999999998887654
No 8
>d2diia1 a.240.1.1 (A:8-55) TFIIH basal transcription factor complex p62 subunit, BTF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.25 E-value=12 Score=20.80 Aligned_cols=12 Identities=50% Similarity=0.783 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHH
Q psy2822 7 RLEEKNRHIEKK 18 (78)
Q Consensus 7 RLEEKe~~l~KK 18 (78)
-||||++||..=
T Consensus 8 eLeEKnr~L~en 19 (48)
T d2diia1 8 ELEEKNRMLQED 19 (48)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHhhccccC
Confidence 489999998653
No 9
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Probab=21.70 E-value=98 Score=22.12 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=29.5
Q ss_pred HHHHHHHhHhHHHHHHhHhhhhhhHHHHHHhHHHHHHHHHH
Q psy2822 23 LTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKK 63 (78)
Q Consensus 23 ~~~~~EK~~~~~El~eLkD~lDiKdRKInVLQrKIENL~~~ 63 (78)
..+.+|...+..|+.+|.+.|.-.++-.+++...++.+.++
T Consensus 443 ~kL~~E~~~l~~ei~eL~~iL~s~~~l~~~i~~EL~~lk~k 483 (493)
T d1ab4a_ 443 EKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQ 483 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 44566777788888888888876666677776666666554
No 10
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.72 E-value=63 Score=17.33 Aligned_cols=30 Identities=7% Similarity=0.092 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHhH
Q psy2822 11 KNRHIEKKTQTALTATQEKNKMQAELQEMK 40 (78)
Q Consensus 11 Ke~~l~KKtq~~~~~~~EK~~~~~El~eLk 40 (78)
|-.+|..=+.+|..++.+-..+.+|+..|.
T Consensus 38 K~~iL~~A~~yI~~L~~~~~~l~~~~~~L~ 67 (79)
T d1nlwa_ 38 TLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ 67 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777777766666666655554
Done!