RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2822
(78 letters)
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 37.6 bits (87), Expect = 1e-04
Identities = 14/76 (18%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 2 EELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKIN-VLQRKEKEK 60
E R +LEE+ H+ + + +Q L + +D+K+ + N L++ +++
Sbjct: 1909 NEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQ 1968
Query: 61 KKKKKKKKKKKKKEKK 76
+ + K+K ++ + +
Sbjct: 1969 QAAEIKQKDARELQVQ 1984
Score = 27.6 bits (61), Expect = 0.39
Identities = 13/78 (16%), Positives = 34/78 (43%)
Query: 1 VEELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEK 60
V++L+ L +KNR ++ K + A ++ + Q + + +++V ++ +
Sbjct: 1936 VKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQ 1995
Query: 61 KKKKKKKKKKKKKEKKNK 78
K K +K + +
Sbjct: 1996 KVKAYADLEKAEPTGPLR 2013
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 33.9 bits (78), Expect = 0.002
Identities = 7/78 (8%), Positives = 33/78 (42%)
Query: 1 VEELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEK 60
+ +L+ +++E+N+ + + + +L+ + + + + + +
Sbjct: 930 IMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSL 989
Query: 61 KKKKKKKKKKKKKEKKNK 78
+++ K +K+ + + K
Sbjct: 990 QEEIAKLRKELHQTQTEK 1007
Score = 26.6 bits (59), Expect = 0.83
Identities = 9/78 (11%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 2 EELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKI-NVLQRKEKEK 60
++L LE K I + + +E + ++ ++ + K+ + ++R +
Sbjct: 920 KKLHIGLENK---IMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSE 976
Query: 61 KKKKKKKKKKKKKEKKNK 78
++ K + +++
Sbjct: 977 EEAKNATNRVLSLQEEIA 994
Score = 23.9 bits (52), Expect = 6.3
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 1 VEELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEK 60
VE LR EE + +E K++ EL + + + + + + ++
Sbjct: 969 VERLRMSEEEAKNATNRVLS----LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQL 1024
Query: 61 KKKKKKKKKKKKKEK 75
+ K++ K EK
Sbjct: 1025 VSELKEQNTLLKTEK 1039
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.077
Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 22/74 (29%)
Query: 2 EELRSRLEEKNRHI--EKKTQTALTATQEKN---------------KMQAELQEMKDHMD 44
E+++ + + N H+ K+ + +L N + L++ K
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISL-----VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG 401
Query: 45 IKDRKINVLQRKEK 58
+ +I +RK K
Sbjct: 402 LDQSRIPFSERKLK 415
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 28.7 bits (64), Expect = 0.12
Identities = 13/77 (16%), Positives = 27/77 (35%)
Query: 2 EELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKK 61
E + + +K + +E E+ + ++D++ +
Sbjct: 33 EAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDG 92
Query: 62 KKKKKKKKKKKKEKKNK 78
KKKKKKK+K+
Sbjct: 93 DGATGKKKKKKKKKRGP 109
Score = 26.0 bits (57), Expect = 1.3
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 16 EKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKKKKKKKKKKKKEK 75
E++ A+ ++ Q E ++D +D + KKKKKKKKK+ K +
Sbjct: 53 EQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQ 112
Query: 76 KN 77
+
Sbjct: 113 TD 114
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A
{Enterobacteria phage HK97} PDB: 3qpr_A
Length = 385
Score = 27.9 bits (61), Expect = 0.33
Identities = 8/80 (10%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 1 VEELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQE----MKDHMDIKDRKINVLQRK 56
+ ++ +EE + + + + ++ +LQ +++ + ++ L++K
Sbjct: 4 LALIQKAIEESQQKMTQLFDAQKAEIESTGQVSKQLQSDLMKVQEELTKSGTRLFDLEQK 63
Query: 57 EKEKKKKKKKKKKKKKKEKK 76
+ +KK ++ +
Sbjct: 64 LASGAENPGEKKSFSERAAE 83
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 27.5 bits (60), Expect = 0.42
Identities = 11/58 (18%), Positives = 22/58 (37%)
Query: 19 TQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKKKKKKKKKKKKEKK 76
T A ++ K + +E K + K +K ++ K+ ++ K K K
Sbjct: 818 TARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYSSK 875
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 27.1 bits (60), Expect = 0.49
Identities = 9/87 (10%), Positives = 27/87 (31%), Gaps = 12/87 (13%)
Query: 1 VEELRSRLEEKNRHIEKKTQTA-----LTATQEKNKMQAELQEMKDHMDIKDRKIN---- 51
+ R+ ++ + ++ + +LQE + +++ K+N
Sbjct: 1826 IHFDRNFYQKMKVGVNPRSPGYFIDGLRALVKLVTAKYQDLQENQRFVNVGLEKLNESVL 1885
Query: 52 ---VLQRKEKEKKKKKKKKKKKKKKEK 75
L + K +K++
Sbjct: 1886 KVNELNKTLSISLVKSLTFEKERWLNT 1912
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 26.7 bits (59), Expect = 0.70
Identities = 16/77 (20%), Positives = 35/77 (45%)
Query: 2 EELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEKK 61
+EL L E IE++ + + EK KMQ ++ ++++ ++ ++ LQ ++
Sbjct: 923 QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD 982
Query: 62 KKKKKKKKKKKKEKKNK 78
K KK + +
Sbjct: 983 GKIKKMEDDILIMEDQN 999
Score = 26.7 bits (59), Expect = 0.70
Identities = 16/78 (20%), Positives = 38/78 (48%)
Query: 1 VEELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEK 60
+ +L +LEE+ +K +TA + KM+ ++ M+D + ++ +L+ + +
Sbjct: 957 MLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDL 1016
Query: 61 KKKKKKKKKKKKKEKKNK 78
++++K K K K
Sbjct: 1017 TTNLAEEEEKAKNLTKLK 1034
Score = 24.0 bits (52), Expect = 6.9
Identities = 8/78 (10%), Positives = 30/78 (38%)
Query: 1 VEELRSRLEEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIKDRKINVLQRKEKEK 60
++ +RLE++ + + +Q +L+ K + +++ L + +
Sbjct: 1097 LQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEAL 1156
Query: 61 KKKKKKKKKKKKKEKKNK 78
K + + +++ +
Sbjct: 1157 KTELEDTLDTTATQQELR 1174
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C
3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C*
2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Length = 319
Score = 26.7 bits (59), Expect = 0.81
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 31 KMQAELQEMKDHMDIKDRKINVLQRKEKEKKKK 63
KM E+ + + + D I LQ +K
Sbjct: 1 KMLEEIMKYEASILTHDSSIRYLQEIYNSNNQK 33
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 26.1 bits (58), Expect = 1.2
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 54 QRKEKEKKKKKKKKKKKKKKEKKNK 78
++K K+K+K + KKE +
Sbjct: 28 KKKAGRGGGKRKEKLENMKKEMEIN 52
>2w25_A Probable transcriptional regulatory protein; transcription
regulation, mutant, RV3291C, Glu104Ala, DNA-binding;
2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A*
2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A
2qz8_A
Length = 150
Score = 25.6 bits (57), Expect = 1.3
Identities = 5/18 (27%), Positives = 8/18 (44%), Gaps = 1/18 (5%)
Query: 39 MKDHMDIKDRKI-NVLQR 55
M + +D DR + L
Sbjct: 1 MNEALDDIDRILVRELAA 18
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 25.4 bits (56), Expect = 2.2
Identities = 4/21 (19%), Positives = 12/21 (57%)
Query: 52 VLQRKEKEKKKKKKKKKKKKK 72
VLQ +++ +++K ++
Sbjct: 178 VLQPPRRKEVPRRRKNHRRSG 198
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 118
Score = 24.9 bits (54), Expect = 2.2
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 29 KNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKKKKKKKKK 70
+++ +L KD + R I V + E K
Sbjct: 69 ESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPN 110
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 25.1 bits (55), Expect = 2.5
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 35 ELQEMKDHMDIKDRKI-NVLQRKEKEKKKKKKKKKKKKKKEKK 76
E K M+++D ++ +LQ K +KKKKKK K E
Sbjct: 346 EPDLYKSEMEVQDAELKALLQSSASRKTQKKKKKKASKTAENA 388
>2lgz_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit STT3; catalytic domain, oligosaccharyl
transferase; NMR {Saccharomyces cerevisiae}
Length = 273
Score = 25.2 bits (54), Expect = 2.8
Identities = 4/33 (12%), Positives = 15/33 (45%)
Query: 46 KDRKINVLQRKEKEKKKKKKKKKKKKKKEKKNK 78
+ +K + R ++ + + K ++ K+ +
Sbjct: 236 QLKKDDAQGRTLRDVGELTRSSTKTRRSIKRPE 268
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 23.2 bits (51), Expect = 9.5
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 53 LQRKEKEKKKKKKKKKKKKKKEKKNK 78
L+RK+ EK+ K+ +KK+K K E +
Sbjct: 154 LKRKKFEKELKELQKKQKHKLEHHHH 179
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.300 0.117 0.282
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,013,090
Number of extensions: 52296
Number of successful extensions: 2089
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1440
Number of HSP's successfully gapped: 567
Length of query: 78
Length of database: 6,701,793
Length adjustment: 47
Effective length of query: 31
Effective length of database: 5,389,506
Effective search space: 167074686
Effective search space used: 167074686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 51 (23.4 bits)