RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2822
         (78 letters)



>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide),
          N-terminal domain {Bacillus thuringiensis, CRYIA (A)
          [TaxId: 1428]}
          Length = 223

 Score = 24.4 bits (53), Expect = 1.3
 Identities = 4/32 (12%), Positives = 12/32 (37%), Gaps = 1/32 (3%)

Query: 13 RHIEKKTQTALTATQEKNKMQAELQEMKDHMD 44
            IE+     +     +N+  + L+ + +   
Sbjct: 46 VQIEQLINQRIE-EFARNQAISRLEGLSNLYQ 76


>d2gp4a1 c.8.2.2 (A:419-608) 6-phosphogluconate dehydratase EDD
           {Shewanella oneidensis [TaxId: 70863]}
          Length = 190

 Score = 24.1 bits (52), Expect = 2.2
 Identities = 2/32 (6%), Positives = 12/32 (37%)

Query: 42  HMDIKDRKINVLQRKEKEKKKKKKKKKKKKKK 73
            +D    ++++L    +   +   +   +  +
Sbjct: 127 RVDALTGELSLLVSDTELATRTATEIDLRHSR 158


>d2d0ta1 a.266.1.2 (A:12-403) Indoleamine 2,3-dioxygenase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 392

 Score = 23.8 bits (51), Expect = 2.5
 Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 26  TQEKNKMQAELQEMKDHMDIKDRK-INVLQRKEKEKKKKKKKKKKKKKKE 74
           T         LQ+M+ +M    R  +  L+     ++    K     ++ 
Sbjct: 271 TAGGGHAAQFLQDMRRYMPPAHRNFLCSLESNPSVREFVLSKGDAGLREA 320


>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
           DNA-binding fragment {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 223

 Score = 23.9 bits (52), Expect = 2.5
 Identities = 10/50 (20%), Positives = 25/50 (50%)

Query: 29  KNKMQAELQEMKDHMDIKDRKINVLQRKEKEKKKKKKKKKKKKKKEKKNK 78
           ++       E+K+       K+    + +KE+KK+   ++KK+ + ++ K
Sbjct: 76  ESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREK 125


>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
           synthase {Escherichia coli [TaxId: 562]}
          Length = 427

 Score = 23.0 bits (48), Expect = 6.4
 Identities = 9/38 (23%), Positives = 15/38 (39%)

Query: 9   EEKNRHIEKKTQTALTATQEKNKMQAELQEMKDHMDIK 46
                   K+T        E  K+ AE++E  D++ I 
Sbjct: 332 RNIYNWRVKETDRLFAMATELRKVGAEVEEGHDYIRIT 369


>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
           N-terminal DNA-binding fragment {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 230

 Score = 22.4 bits (48), Expect = 8.4
 Identities = 8/31 (25%), Positives = 18/31 (58%)

Query: 48  RKINVLQRKEKEKKKKKKKKKKKKKKEKKNK 78
            +++   + + E +K+  K++K K KE+  K
Sbjct: 103 TQMSQYFKAQTEARKQMSKEEKLKIKEENEK 133


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.300    0.117    0.282 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 254,754
Number of extensions: 11616
Number of successful extensions: 452
Number of sequences better than 10.0: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 181
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 47 (22.2 bits)