BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2823
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V71|A Chain A, Coiled-Coil Region Of Nudel
pdb|2V71|B Chain B, Coiled-Coil Region Of Nudel
Length = 189
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 36/58 (62%)
Query: 61 ADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEE 118
A L +A+ R +QADN+R++ E + ++EK+E + Y+ + LE+ + ++KE+
Sbjct: 49 AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQ 106
>pdb|2V66|B Chain B, Crystal Structure Of The Coiled-Coil Domain Of Ndel1 (A.A.
58 To 169)c
pdb|2V66|C Chain C, Crystal Structure Of The Coiled-Coil Domain Of Ndel1 (A.A.
58 To 169)c
pdb|2V66|D Chain D, Crystal Structure Of The Coiled-Coil Domain Of Ndel1 (A.A.
58 To 169)c
pdb|2V66|E Chain E, Crystal Structure Of The Coiled-Coil Domain Of Ndel1 (A.A.
58 To 169)c
Length = 111
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%)
Query: 71 RVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEE 118
R +QADN+R++ E + ++EK+E + Y+ + LE+ + ++KE+
Sbjct: 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQ 53
>pdb|1RGY|A Chain A, Citrobacter Freundii Gn346 Class C Beta-Lactamase
Complexed With Transition-State Analog Of Cefotaxime
Length = 360
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 71 RVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEM 112
R VQA+ + +EKT+Q+ +E +Q +R+ + EM
Sbjct: 231 RWVQANMDASHVQEKTLQQGIELAQSRYWRIGDMYQGLGWEM 272
>pdb|1FR1|A Chain A, Refined Crystal Structure Of Beta-Lactamase From
Citrobacter Freundii Indicates A Mechanism For
Beta-Lactam Hydrolysis
pdb|1FR1|B Chain B, Refined Crystal Structure Of Beta-Lactamase From
Citrobacter Freundii Indicates A Mechanism For
Beta-Lactam Hydrolysis
pdb|1FR6|A Chain A, Refined Crystal Structure Of Beta-Lactamase From
Citrobacter Freundii Indicates A Mechanism For
Beta-Lactam Hydrolysis
pdb|1FR6|B Chain B, Refined Crystal Structure Of Beta-Lactamase From
Citrobacter Freundii Indicates A Mechanism For
Beta-Lactam Hydrolysis
Length = 361
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 71 RVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEM 112
R VQA+ + + +EKT+Q+ +E +Q +R+ + EM
Sbjct: 232 RWVQANMDASQVQEKTLQQGIELAQSRYWRIGDMYQGLGWEM 273
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 26 MDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQ---AELRVVQADNERVRS 82
+D E LE + L A+ + ++YD+ ADL++AQ E + +QA+ +V+
Sbjct: 293 VDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352
Query: 83 EEKTMQEKVEKSQGEVY 99
+ K ++K + + +++
Sbjct: 353 KIKAQKDKEKAAYAKMF 369
>pdb|3MQ9|A Chain A, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|B Chain B, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|C Chain C, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|D Chain D, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|E Chain E, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|F Chain F, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|G Chain G, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|H Chain H, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
Length = 471
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 73 VQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMK 116
V A + +E+ Q+KVE+ +GE+ L KL++ E+E ++
Sbjct: 427 VXALXASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 86 TMQEKVEKSQGEVYRLKAKLE 106
TMQE + KS G Y ++AK+E
Sbjct: 204 TMQEIIGKSSGRSYAMEAKME 224
>pdb|3NWH|A Chain A, Crystal Structure Of Bst2TETHERIN
pdb|3NWH|B Chain B, Crystal Structure Of Bst2TETHERIN
pdb|3NWH|C Chain C, Crystal Structure Of Bst2TETHERIN
pdb|3NWH|D Chain D, Crystal Structure Of Bst2TETHERIN
Length = 112
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 82 SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEE 118
+E+ Q+KVE+ +GE+ L KL++ E+E ++ E
Sbjct: 64 AEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRE 100
>pdb|3MQC|A Chain A, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317
(P21)
pdb|3MQC|B Chain B, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317
(P21)
pdb|3MQC|C Chain C, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317
(P21)
pdb|3MQC|D Chain D, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317
(P21)
Length = 121
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 82 SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEE 118
+E+ Q+KVE+ +GE+ L KL++ E+E ++ E
Sbjct: 64 AEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRE 100
>pdb|2X7A|A Chain A, Structural Basis Of Hiv-1 Tethering To Membranes By The
Bst2-Tetherin Ectodomain
pdb|2X7A|B Chain B, Structural Basis Of Hiv-1 Tethering To Membranes By The
Bst2-Tetherin Ectodomain
pdb|2X7A|C Chain C, Structural Basis Of Hiv-1 Tethering To Membranes By The
Bst2-Tetherin Ectodomain
pdb|2X7A|D Chain D, Structural Basis Of Hiv-1 Tethering To Membranes By The
Bst2-Tetherin Ectodomain
pdb|2X7A|E Chain E, Structural Basis Of Hiv-1 Tethering To Membranes By The
Bst2-Tetherin Ectodomain
pdb|2X7A|F Chain F, Structural Basis Of Hiv-1 Tethering To Membranes By The
Bst2-Tetherin Ectodomain
pdb|2X7A|G Chain G, Structural Basis Of Hiv-1 Tethering To Membranes By The
Bst2-Tetherin Ectodomain
pdb|2X7A|H Chain H, Structural Basis Of Hiv-1 Tethering To Membranes By The
Bst2-Tetherin Ectodomain
pdb|2X7A|I Chain I, Structural Basis Of Hiv-1 Tethering To Membranes By The
Bst2-Tetherin Ectodomain
pdb|2X7A|J Chain J, Structural Basis Of Hiv-1 Tethering To Membranes By The
Bst2-Tetherin Ectodomain
pdb|2X7A|K Chain K, Structural Basis Of Hiv-1 Tethering To Membranes By The
Bst2-Tetherin Ectodomain
Length = 61
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 82 SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEE 118
+E+ Q+KVE+ +GE+ L KL++ E+E ++ E
Sbjct: 18 AEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRE 54
>pdb|2XG7|A Chain A, Crystal Structure Of Bst2-Tetherin Ectodomain Expressed In
Hek293t Cells
pdb|2XG7|C Chain C, Crystal Structure Of Bst2-Tetherin Ectodomain Expressed In
Hek293t Cells
Length = 103
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 82 SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEE 118
+E+ Q+KVE+ +GE+ L KL++ E+E ++ E
Sbjct: 54 AEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRE 90
>pdb|3MQB|A Chain A, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317 (C2)
pdb|3MQB|B Chain B, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317 (C2)
pdb|3MQB|E Chain E, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317 (C2)
pdb|3MQB|F Chain F, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317 (C2)
Length = 121
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 82 SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEE 118
+E+ Q+KVE+ +GE+ L KL++ E+E ++ E
Sbjct: 64 AEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRE 100
>pdb|3MQ7|A Chain A, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|B Chain B, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|C Chain C, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|D Chain D, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|E Chain E, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|F Chain F, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|G Chain G, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|H Chain H, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|I Chain I, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|J Chain J, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|K Chain K, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|L Chain L, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
Length = 121
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 82 SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEE 118
+E+ Q+KVE+ +GE+ L KL++ E+E ++ E
Sbjct: 64 AEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRE 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.306 0.122 0.310
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,915,335
Number of Sequences: 62578
Number of extensions: 86744
Number of successful extensions: 484
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 136
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 45 (21.9 bits)