BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2823
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7VIL7|RNY_HELHP Ribonuclease Y OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1)
GN=rny PE=3 SV=2
Length = 523
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 51 RLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEK--VEKSQGEVYRLKAKLENT 108
RL+++Y++ CA L + E R+ + D E ++ +K VEK + E+ LK +L +
Sbjct: 67 RLKQEYEQECATLHK-NYESRLAKLDKEESNRYQQLNNQKQEVEKEKQEIAELKVRLLRS 125
Query: 109 QGEMESMKEEYER 121
QGE + +K+EY+
Sbjct: 126 QGEQDKLKQEYQH 138
>sp|Q5R829|ODFP2_PONAB Outer dense fiber protein 2 OS=Pongo abelii GN=ODF2 PE=2 SV=1
Length = 680
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 40/67 (59%)
Query: 50 DRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ 109
++++E D L R AE + +NER+++ M++K+ ++ EV +LKA ++N +
Sbjct: 476 EKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYE 535
Query: 110 GEMESMK 116
G +++ K
Sbjct: 536 GMIDNYK 542
>sp|Q2T9U2|ODFP2_BOVIN Outer dense fiber protein 2 OS=Bos taurus GN=ODF2 PE=2 SV=1
Length = 657
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 40/67 (59%)
Query: 50 DRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ 109
++++E D L R AE + +NER+++ M++K+ ++ EV +LKA ++N +
Sbjct: 481 EKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHIEVQQLKASVKNYE 540
Query: 110 GEMESMK 116
G +++ K
Sbjct: 541 GMIDNYK 547
>sp|Q5BJF6|ODFP2_HUMAN Outer dense fiber protein 2 OS=Homo sapiens GN=ODF2 PE=1 SV=1
Length = 829
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 40/67 (59%)
Query: 50 DRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ 109
++++E D L R AE + +NER+++ M++K+ ++ EV +LKA ++N +
Sbjct: 481 EKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYE 540
Query: 110 GEMESMK 116
G +++ K
Sbjct: 541 GMIDNYK 547
>sp|Q6AYX5|ODFP2_RAT Outer dense fiber protein 2 OS=Rattus norvegicus GN=Odf2 PE=1 SV=2
Length = 825
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 40/67 (59%)
Query: 50 DRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ 109
++++E D L R AE + +NER+++ M++K+ ++ EV +LKA ++N +
Sbjct: 476 EKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYE 535
Query: 110 GEMESMK 116
G +++ K
Sbjct: 536 GMIDNYK 542
>sp|A3KGV1|ODFP2_MOUSE Outer dense fiber protein 2 OS=Mus musculus GN=Odf2 PE=1 SV=1
Length = 830
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 40/67 (59%)
Query: 50 DRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ 109
++++E D L R AE + +NER+++ M++K+ ++ EV +LKA ++N +
Sbjct: 481 EKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYE 540
Query: 110 GEMESMK 116
G +++ K
Sbjct: 541 GMIDNYK 547
>sp|Q4R8C3|ODFP2_MACFA Outer dense fiber protein 2 OS=Macaca fascicularis GN=ODF2 PE=2
SV=1
Length = 638
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 40/67 (59%)
Query: 50 DRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ 109
++++E D L R AE + +NER+++ M++K+ ++ EV +LKA ++N +
Sbjct: 462 EKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYE 521
Query: 110 GEMESMK 116
G +++ K
Sbjct: 522 GMIDNYK 528
>sp|P40957|MAD1_YEAST Spindle assembly checkpoint component MAD1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MAD1 PE=1
SV=1
Length = 749
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 28 KSKEELERSQATLATLSTSAELDRLQ---------EKYDKTCADLRRAQAELRVVQADNE 78
+S +++ Q L TL E+++LQ +KY T +L +A + + + N+
Sbjct: 59 QSNRQIQALQFKLNTLQNEYEIEKLQLQKQTNILEKKYKATIDELEKALNDTKYLYESND 118
Query: 79 RVRSEEKTMQEKVEKSQGE----VYRLKAKLENTQGEMESMKEEYE 120
++ E K+++E+ S + + L+ L+N EME+++++Y+
Sbjct: 119 KLEQELKSLKERSANSMNDKDKCIEELRTTLQNKDLEMETLRQQYD 164
>sp|Q5ZKH4|NDEL1_CHICK Nuclear distribution protein nudE-like 1 OS=Gallus gallus GN=NDEL1
PE=2 SV=1
Length = 343
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 38/61 (62%)
Query: 61 ADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120
A L +A+ R +QADN+R++ E +T++EK+E + Y+ + LE+ + ++K++
Sbjct: 53 AQLVQAEQRNRDLQADNQRLKYEVETLKEKLEHQYAQSYKQVSLLEDDLSQTRAIKDQLH 112
Query: 121 R 121
+
Sbjct: 113 K 113
>sp|A6ZYV5|SP110_YEAS7 Spindle pole body component 110 OS=Saccharomyces cerevisiae (strain
YJM789) GN=SPC110 PE=3 SV=1
Length = 944
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 53 QEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEM 112
QEKY K +L+ + ++ ++ ++ E+ T+ EK+ E +LK K+E+
Sbjct: 486 QEKYSKMEKELKEREFNYKISES---KLEDEKTTLNEKISNLAAENSQLKNKIEDNSTAT 542
Query: 113 ESMKEEYER 121
MKE YE+
Sbjct: 543 HHMKENYEK 551
>sp|B3LFU6|SP110_YEAS1 Spindle pole body component 110 OS=Saccharomyces cerevisiae (strain
RM11-1a) GN=SPC110 PE=3 SV=1
Length = 944
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 53 QEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEM 112
QEKY K +L+ + ++ ++ ++ E+ T+ EK+ E +LK K+E+
Sbjct: 486 QEKYSKMEKELKEREFNYKISES---KLEDEKTTLNEKISNLAAENSQLKNKIEDNSTAT 542
Query: 113 ESMKEEYER 121
MKE YE+
Sbjct: 543 HHMKENYEK 551
>sp|Q78PB6|NDEL1_RAT Nuclear distribution protein nudE-like 1 OS=Rattus norvegicus
GN=Ndel1 PE=1 SV=1
Length = 345
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 37/61 (60%)
Query: 61 ADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120
A L +A+ R +QADN+R++ E + ++EK+E + Y+ + LE+ + ++KE+
Sbjct: 53 AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLH 112
Query: 121 R 121
+
Sbjct: 113 K 113
>sp|Q9ERR1|NDEL1_MOUSE Nuclear distribution protein nudE-like 1 OS=Mus musculus GN=Ndel1
PE=1 SV=2
Length = 345
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 37/61 (60%)
Query: 61 ADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120
A L +A+ R +QADN+R++ E + ++EK+E + Y+ + LE+ + ++KE+
Sbjct: 53 AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLH 112
Query: 121 R 121
+
Sbjct: 113 K 113
>sp|P32380|SP110_YEAST Spindle pole body component 110 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SPC110 PE=1 SV=1
Length = 944
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 53 QEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEM 112
QEKY K +L+ + ++ ++ ++ E+ T+ EK+ E +LK K+E+
Sbjct: 486 QEKYSKMEKELKEREFNYKISES---KLEDEKTTLNEKISNLAAENSQLKNKIEDNSTAT 542
Query: 113 ESMKEEYER 121
MKE YE+
Sbjct: 543 HHMKENYEK 551
>sp|C8Z5R8|SP110_YEAS8 Spindle pole body component 110 OS=Saccharomyces cerevisiae (strain
Lalvin EC1118 / Prise de mousse) GN=SPC110 PE=3 SV=1
Length = 944
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 53 QEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEM 112
QEKY K +L+ + ++ ++ ++ E+ T+ EK+ E +LK K+E+
Sbjct: 486 QEKYSKMEKELKEREFNYKISES---KLEDEKTTLNEKISNLAAENSQLKNKIEDNSTAT 542
Query: 113 ESMKEEYER 121
MKE YE+
Sbjct: 543 HHMKENYEK 551
>sp|O46480|NDEL1_RABIT Nuclear distribution protein nudE-like 1 OS=Oryctolagus cuniculus
GN=NDEL1 PE=1 SV=3
Length = 345
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 37/61 (60%)
Query: 61 ADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120
A L +A+ R +QADN+R++ E + ++EK+E + Y+ + LE+ + ++KE+
Sbjct: 53 AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLH 112
Query: 121 R 121
+
Sbjct: 113 K 113
>sp|Q5R8T7|NDEL1_PONAB Nuclear distribution protein nudE-like 1 OS=Pongo abelii GN=NDEL1
PE=2 SV=1
Length = 345
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 37/61 (60%)
Query: 61 ADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120
A L +A+ R +QADN+R++ E + ++EK+E + Y+ + LE+ + ++KE+
Sbjct: 53 AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLH 112
Query: 121 R 121
+
Sbjct: 113 K 113
>sp|Q5FVL4|CC153_RAT Coiled-coil domain-containing protein 153 OS=Rattus norvegicus
GN=Ccdc153 PE=2 SV=1
Length = 202
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 50 DRLQEKYDKTCADLRRAQAELRVVQADNERVRSE-EKTMQEKVEKSQGEVYRLKAKLENT 108
DRL+++ A+L R Q+E R V A+ R R +K + + ++ + EV L+ +LE
Sbjct: 60 DRLKQRLQGLEAELERTQSEGRAVYAEMSRQRQALQKELGTRSKRLEEEVRGLRERLETC 119
Query: 109 QGEMESMKEEYERS 122
Q E ++ +EE ER+
Sbjct: 120 QREAKTAREEAERA 133
>sp|Q9GZM8|NDEL1_HUMAN Nuclear distribution protein nudE-like 1 OS=Homo sapiens GN=NDEL1
PE=1 SV=1
Length = 345
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 37/61 (60%)
Query: 61 ADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120
A L +A+ R +QADN+R++ E + ++EK+E + Y+ + LE+ + ++KE+
Sbjct: 53 AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLH 112
Query: 121 R 121
+
Sbjct: 113 K 113
>sp|Q4R4S6|NDEL1_MACFA Nuclear distribution protein nudE-like 1 OS=Macaca fascicularis
GN=NDEL1 PE=2 SV=2
Length = 347
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 37/61 (60%)
Query: 61 ADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120
A L +A+ R +QADN+R++ E + ++EK+E + Y+ + LE+ + ++KE+
Sbjct: 53 AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLH 112
Query: 121 R 121
+
Sbjct: 113 K 113
>sp|Q6NY15|TSG10_MOUSE Testis-specific gene 10 protein OS=Mus musculus GN=Tsga10 PE=1 SV=1
Length = 697
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 5 LVPPPGTLSRLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLR 64
L G + L SERDK L ++++EE+ R + + S K A LR
Sbjct: 47 LAEIQGNVKVLTSERDKTFLLYEQAQEEIARLRREMMKSCKSP-------KSTTAHAILR 99
Query: 65 RAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEME 113
R + E V D R+ +E +++E+++ +Q + KA LE E+E
Sbjct: 100 RVETERDVAFTDLRRMTTERDSLRERLKIAQETAFNEKAHLEQRIEELE 148
>sp|Q60YN5|BRE1_CAEBR E3 ubiquitin-protein ligase bre-1 OS=Caenorhabditis briggsae
GN=rfp-1 PE=3 SV=1
Length = 828
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 56 YDKTCADLRRAQAE---LRVVQADNERVRSEE--KTMQEKVEKS--QGEVYRLKAKLENT 108
+++ C DL E LR V+ + E++ SEE KT++E +S YR+ E
Sbjct: 374 HERICKDLEDVTVERDQLRSVKENREKMMSEEHQKTIKEIQHQSEIHNTFYRVSHDSEVL 433
Query: 109 QGEMESMKEEYERS 122
+ E E++KEEY ++
Sbjct: 434 RAEFETVKEEYNKT 447
>sp|Q69GZ5|SMC_METVO Chromosome partition protein Smc OS=Methanococcus voltae GN=smc
PE=3 SV=1
Length = 1199
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 44 STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKA 103
S + +L+ +EK + D + +AE +V+ + E++ E + +++KVE+S+ +V LK
Sbjct: 354 SKNNDLNETKEKINNIRIDTLKKEAEAKVLIKEIEKLNEERQNLEKKVEQSESQVKALKN 413
Query: 104 -------KLENTQGEMESMKEE 118
++ +TQ E+ +K E
Sbjct: 414 QESKLSERINDTQKELYGLKNE 435
>sp|Q9BZW7|TSG10_HUMAN Testis-specific gene 10 protein OS=Homo sapiens GN=TSGA10 PE=1 SV=1
Length = 698
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 5 LVPPPGTLSRLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLR 64
L G + L SERDK L ++++EE+ R + + S K A LR
Sbjct: 47 LAEIQGNVKVLKSERDKIFLLYEQAQEEITRLRREMMKSCKSP-------KSTTAHAILR 99
Query: 65 RAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEME 113
R + E V D R+ +E +++E+++ +Q + KA LE E+E
Sbjct: 100 RVETERDVAFTDLRRMTTERDSLRERLKIAQETAFNEKAHLEQRIEELE 148
>sp|Q06VD6|Y147_TNAVC Structural protein ORF147 OS=Trichoplusia ni ascovirus 2c GN=ORF147
PE=1 SV=1
Length = 1481
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 20/103 (19%)
Query: 22 AVLEMDKSKEELERSQATLATLSTSAELDRLQEK---YDKTCADLRRAQAELRVVQADNE 78
A L+++ K ELER D+ +EK D +L+R +L + D E
Sbjct: 405 AKLKINMKKSELER--------------DKFREKCLKSDNIIMELKR---QLEINNVDLE 447
Query: 79 RVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYER 121
R+R E QEKV+ E+ + K E + +M +Y R
Sbjct: 448 RIRDERNEYQEKVKFLDAEILTNRNKFEEQTNALNNMLRQYSR 490
>sp|O75150|BRE1B_HUMAN E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens GN=RNF40 PE=1
SV=4
Length = 1001
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 46 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKL 105
+AEL+ QE + A+L + QAEL+ NER++ +++ E+V + GE L+A+
Sbjct: 336 NAELEENQELANSRMAELEKLQAELQGAVRTNERLKVALRSLPEEVVRETGEYRMLQAQF 395
>sp|Q4R7K7|BRE1B_MACFA E3 ubiquitin-protein ligase BRE1B OS=Macaca fascicularis GN=RNF40
PE=2 SV=1
Length = 1001
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 46 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKL 105
+AEL+ QE + A+L + QAEL+ NER++ +++ E+V + GE L+A+
Sbjct: 336 NAELEENQELANSRMAELEKLQAELQGAVRTNERLKVALRSLPEEVVRETGEYRMLQAQF 395
>sp|Q3U319|BRE1B_MOUSE E3 ubiquitin-protein ligase BRE1B OS=Mus musculus GN=Rnf40 PE=2
SV=2
Length = 1001
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 46 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKL 105
+AEL+ QE + A+L + QAEL+ NER++ +++ E+V + GE L+A+
Sbjct: 336 NAELEENQELANSRMAELEKLQAELQGAVRTNERLKVALRSLPEEVVRETGEYRMLQAQF 395
>sp|Q8CJB9|BRE1B_RAT E3 ubiquitin-protein ligase BRE1B OS=Rattus norvegicus GN=Rnf40
PE=1 SV=1
Length = 1002
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 46 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKL 105
+AEL+ QE + A+L + QAEL+ NER++ +++ E+V + GE L+A+
Sbjct: 337 NAELEENQELANSRMAELEKLQAELQGAVRTNERLKVALRSLPEEVVRETGEYRMLQAQF 396
>sp|P50532|SMC4_XENLA Structural maintenance of chromosomes protein 4 OS=Xenopus laevis
GN=smc4 PE=1 SV=1
Length = 1290
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 12 LSRLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELR 71
L LS + A+ +++K+KE L + ATL A + L+ K K DL++ + EL
Sbjct: 500 LDIYLSRHNSALSQLNKAKEALNTASATLK--ERRAAIKELETKLPKDEGDLKKREKELE 557
Query: 72 VVQADNERVRSEEKTMQEKVEKS 94
+ ++ ++++ + +++KVE++
Sbjct: 558 SLVSEEGNIKNQVRELRQKVEEA 580
>sp|P0C7Q1|CC153_MOUSE Coiled-coil domain-containing protein 153 OS=Mus musculus
GN=Ccdc153 PE=3 SV=1
Length = 202
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 50 DRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKT-MQEKVEKSQGEVYRLKAKLENT 108
DRL+++ A+L R Q+E + + A+ R R K + + ++ + EV LK +LE
Sbjct: 60 DRLKQRLQGLEAELERTQSEGKAIYAEMSRQRQALKEELGTRSKQLEEEVRSLKEQLETC 119
Query: 109 QGEMESMKEEYERS 122
Q E ++ KEE ER+
Sbjct: 120 QREAKTAKEEAERA 133
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.122 0.310
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,490,446
Number of Sequences: 539616
Number of extensions: 1256646
Number of successful extensions: 15780
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 1225
Number of HSP's that attempted gapping in prelim test: 11344
Number of HSP's gapped (non-prelim): 5247
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)