Query psy2823
Match_columns 122
No_of_seqs 41 out of 43
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 17:50:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2823.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2823hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10174 Cast: RIM-binding pro 99.0 2.6E-09 5.7E-14 98.3 11.4 102 15-117 1-108 (775)
2 PF10174 Cast: RIM-binding pro 98.7 1.5E-07 3.2E-12 87.0 12.2 104 8-120 58-166 (775)
3 PF05701 WEMBL: Weak chloropla 96.6 0.14 3E-06 45.4 14.9 112 9-120 280-403 (522)
4 PF10473 CENP-F_leu_zip: Leuci 96.4 0.3 6.5E-06 37.2 16.0 92 10-101 10-109 (140)
5 PF05701 WEMBL: Weak chloropla 96.4 0.28 6E-06 43.5 15.5 71 47-117 288-358 (522)
6 TIGR02168 SMC_prok_B chromosom 96.3 0.35 7.6E-06 44.0 16.2 17 17-33 677-693 (1179)
7 KOG1962|consensus 96.2 0.1 2.2E-06 42.5 11.2 63 52-114 149-211 (216)
8 PF11559 ADIP: Afadin- and alp 96.2 0.25 5.4E-06 36.4 12.4 73 47-119 73-149 (151)
9 TIGR02168 SMC_prok_B chromosom 96.1 0.5 1.1E-05 43.0 16.2 27 11-37 678-704 (1179)
10 PF10473 CENP-F_leu_zip: Leuci 96.1 0.27 5.8E-06 37.5 12.2 73 47-119 17-89 (140)
11 PRK11637 AmiB activator; Provi 96.0 0.36 7.9E-06 41.1 14.0 13 55-67 83-95 (428)
12 PRK11637 AmiB activator; Provi 95.8 0.22 4.8E-06 42.4 11.7 66 48-113 62-127 (428)
13 TIGR01843 type_I_hlyD type I s 95.4 1.2 2.7E-05 36.3 16.1 74 46-119 195-269 (423)
14 COG4372 Uncharacterized protei 95.1 2 4.3E-05 38.7 15.7 94 9-102 94-192 (499)
15 PF00769 ERM: Ezrin/radixin/mo 94.6 1.5 3.1E-05 35.6 12.5 104 16-119 11-126 (246)
16 KOG0996|consensus 94.4 2.2 4.8E-05 42.4 15.2 113 7-119 437-558 (1293)
17 TIGR01843 type_I_hlyD type I s 94.3 2.5 5.3E-05 34.5 15.5 17 12-28 83-99 (423)
18 PRK09039 hypothetical protein; 94.2 3 6.5E-05 35.3 14.3 49 49-97 118-166 (343)
19 PF00769 ERM: Ezrin/radixin/mo 94.2 2.5 5.4E-05 34.3 15.2 59 22-89 10-68 (246)
20 COG4372 Uncharacterized protei 93.6 4.6 9.9E-05 36.4 14.6 64 46-109 115-178 (499)
21 PF10481 CENP-F_N: Cenp-F N-te 93.5 3.9 8.5E-05 35.0 13.5 102 11-112 19-132 (307)
22 PF04156 IncA: IncA protein; 93.5 2.4 5.3E-05 31.9 14.1 18 18-35 82-99 (191)
23 TIGR02971 heterocyst_DevB ABC 93.3 3.6 7.7E-05 33.1 13.7 28 44-71 132-159 (327)
24 PF12777 MT: Microtubule-bindi 93.3 1 2.2E-05 37.6 9.8 74 47-120 235-308 (344)
25 PF08317 Spc7: Spc7 kinetochor 92.7 5.1 0.00011 33.3 15.7 56 47-102 209-264 (325)
26 PF08317 Spc7: Spc7 kinetochor 92.4 5.7 0.00012 33.0 16.1 56 61-116 209-264 (325)
27 COG1196 Smc Chromosome segrega 92.2 10 0.00022 36.7 15.9 31 10-40 165-195 (1163)
28 KOG1962|consensus 91.7 1.5 3.2E-05 35.8 8.5 61 46-106 150-210 (216)
29 PRK09039 hypothetical protein; 91.7 7.5 0.00016 32.9 14.0 69 52-120 114-182 (343)
30 smart00787 Spc7 Spc7 kinetocho 91.6 7.6 0.00016 32.8 15.8 74 45-118 202-279 (312)
31 KOG0996|consensus 91.5 5.7 0.00012 39.7 13.4 110 9-119 864-979 (1293)
32 PRK04863 mukB cell division pr 91.5 9.6 0.00021 38.5 15.2 51 59-109 353-403 (1486)
33 KOG0250|consensus 91.2 11 0.00024 37.2 14.9 75 45-119 363-438 (1074)
34 COG1579 Zn-ribbon protein, pos 90.8 8.3 0.00018 31.8 13.1 14 83-96 111-124 (239)
35 PF07888 CALCOCO1: Calcium bin 90.8 13 0.00029 34.1 16.1 25 16-40 156-180 (546)
36 COG3883 Uncharacterized protei 90.8 3.5 7.5E-05 34.6 9.9 56 54-109 38-93 (265)
37 PF12128 DUF3584: Protein of u 90.5 18 0.00039 35.3 16.4 103 14-118 604-707 (1201)
38 PF07888 CALCOCO1: Calcium bin 90.1 15 0.00033 33.8 15.5 33 9-41 142-174 (546)
39 PRK10884 SH3 domain-containing 89.9 8.7 0.00019 30.7 12.5 29 81-109 138-166 (206)
40 COG3883 Uncharacterized protei 89.8 6.7 0.00015 32.9 10.8 60 56-115 33-92 (265)
41 PRK10884 SH3 domain-containing 89.8 5.9 0.00013 31.6 10.1 20 18-37 94-113 (206)
42 TIGR02680 conserved hypothetic 89.6 16 0.00035 36.2 14.8 52 44-95 273-324 (1353)
43 KOG0971|consensus 89.6 10 0.00022 37.5 13.1 64 8-71 281-356 (1243)
44 PF12777 MT: Microtubule-bindi 89.5 1.8 3.8E-05 36.3 7.2 70 49-118 223-292 (344)
45 PF12128 DUF3584: Protein of u 89.4 20 0.00042 35.0 15.1 59 61-119 476-534 (1201)
46 cd07651 F-BAR_PombeCdc15_like 89.4 8.4 0.00018 30.2 10.7 68 47-120 121-188 (236)
47 PHA02562 46 endonuclease subun 88.7 15 0.00032 31.7 15.5 104 10-119 299-402 (562)
48 PF11932 DUF3450: Protein of u 88.6 11 0.00024 30.0 11.8 62 44-105 39-100 (251)
49 TIGR02680 conserved hypothetic 88.5 18 0.00039 36.0 14.3 60 54-113 333-392 (1353)
50 PF04111 APG6: Autophagy prote 88.5 12 0.00027 31.3 11.6 17 14-30 13-29 (314)
51 PF11559 ADIP: Afadin- and alp 88.3 8.2 0.00018 28.3 10.9 42 75-116 87-128 (151)
52 PRK02224 chromosome segregatio 88.2 21 0.00045 32.8 14.8 17 101-117 410-426 (880)
53 PF04849 HAP1_N: HAP1 N-termin 88.2 16 0.00034 31.4 15.3 72 11-82 161-248 (306)
54 PF08614 ATG16: Autophagy prot 87.9 11 0.00023 29.1 10.9 36 81-116 143-178 (194)
55 PRK15030 multidrug efflux syst 87.9 4.9 0.00011 33.8 8.9 66 12-77 105-171 (397)
56 PF15619 Lebercilin: Ciliary p 87.7 12 0.00026 29.6 15.8 86 33-118 52-147 (194)
57 PRK03598 putative efflux pump 87.7 14 0.00029 30.1 12.2 23 45-67 143-165 (331)
58 COG4026 Uncharacterized protei 87.4 4.7 0.0001 34.0 8.4 63 49-111 144-206 (290)
59 PRK04778 septation ring format 87.3 11 0.00023 33.8 11.1 31 10-40 310-340 (569)
60 PF04156 IncA: IncA protein; 87.0 11 0.00024 28.3 15.4 23 50-72 126-148 (191)
61 KOG0250|consensus 86.8 17 0.00038 35.9 12.8 71 46-116 393-463 (1074)
62 COG1579 Zn-ribbon protein, pos 86.2 18 0.00038 29.9 13.9 27 87-113 101-127 (239)
63 PF06005 DUF904: Protein of un 86.2 8.4 0.00018 26.2 10.5 67 47-120 4-70 (72)
64 PRK03918 chromosome segregatio 85.7 28 0.00061 31.8 16.7 16 21-36 204-219 (880)
65 TIGR03185 DNA_S_dndD DNA sulfu 85.6 27 0.0006 31.5 14.4 71 17-87 391-468 (650)
66 KOG3647|consensus 85.4 9.7 0.00021 32.9 9.4 63 55-117 113-182 (338)
67 cd07655 F-BAR_PACSIN The F-BAR 84.9 19 0.00041 29.0 11.5 74 47-120 133-206 (258)
68 PF04111 APG6: Autophagy prote 84.7 22 0.00049 29.8 13.5 21 9-29 15-35 (314)
69 PF10186 Atg14: UV radiation r 84.6 17 0.00037 28.3 15.3 82 11-92 21-108 (302)
70 PRK10476 multidrug resistance 84.4 21 0.00046 29.2 12.6 16 12-27 88-103 (346)
71 cd07653 F-BAR_CIP4-like The F- 84.3 18 0.00038 28.3 12.1 7 12-18 67-73 (251)
72 PHA02562 46 endonuclease subun 84.0 27 0.00058 30.1 13.7 63 48-110 214-276 (562)
73 KOG0933|consensus 84.0 49 0.0011 33.1 15.8 73 48-120 802-874 (1174)
74 COG4942 Membrane-bound metallo 83.4 33 0.00071 30.7 14.9 51 70-120 166-216 (420)
75 PF06818 Fez1: Fez1; InterPro 83.3 23 0.00049 28.7 11.0 114 7-120 21-173 (202)
76 PRK09578 periplasmic multidrug 83.1 11 0.00025 31.3 8.8 63 12-74 103-166 (385)
77 TIGR03185 DNA_S_dndD DNA sulfu 83.0 36 0.00077 30.8 15.3 11 47-57 405-415 (650)
78 PF14197 Cep57_CLD_2: Centroso 82.4 12 0.00027 25.1 9.2 58 49-106 7-64 (69)
79 KOG0978|consensus 82.4 46 0.00099 31.6 15.8 43 78-120 576-618 (698)
80 PF00261 Tropomyosin: Tropomyo 82.2 23 0.0005 28.1 16.3 64 56-119 171-234 (237)
81 PRK15030 multidrug efflux syst 82.2 15 0.00032 31.0 9.2 23 87-109 146-168 (397)
82 COG4026 Uncharacterized protei 82.2 30 0.00065 29.3 13.0 94 27-120 106-201 (290)
83 PF12718 Tropomyosin_1: Tropom 82.2 19 0.00041 27.0 12.3 10 108-117 127-136 (143)
84 PRK11556 multidrug efflux syst 82.1 13 0.00029 31.7 9.0 63 10-72 125-188 (415)
85 PF05911 DUF869: Plant protein 81.8 49 0.0011 31.6 14.7 31 10-40 596-626 (769)
86 PF07926 TPR_MLP1_2: TPR/MLP1/ 81.8 18 0.00038 26.4 14.3 77 5-81 5-93 (132)
87 PF00038 Filament: Intermediat 81.5 26 0.00056 28.1 13.7 19 14-32 22-40 (312)
88 KOG0243|consensus 81.4 60 0.0013 32.2 15.8 101 18-121 442-557 (1041)
89 COG4942 Membrane-bound metallo 81.1 40 0.00087 30.1 13.2 72 18-98 39-110 (420)
90 PF10234 Cluap1: Clusterin-ass 81.1 23 0.0005 29.7 9.9 51 69-119 177-234 (267)
91 PF07111 HCR: Alpha helical co 80.9 54 0.0012 31.4 13.4 66 9-79 477-546 (739)
92 PF11180 DUF2968: Protein of u 80.8 28 0.00061 28.1 12.1 53 64-116 129-181 (192)
93 PRK09859 multidrug efflux syst 80.7 15 0.00032 30.7 8.7 64 12-75 101-165 (385)
94 PF10234 Cluap1: Clusterin-ass 80.4 27 0.00058 29.3 10.0 65 55-119 170-241 (267)
95 PF07926 TPR_MLP1_2: TPR/MLP1/ 80.3 20 0.00043 26.1 14.0 24 17-40 3-26 (132)
96 PF01576 Myosin_tail_1: Myosin 79.6 0.58 1.3E-05 44.0 0.0 39 4-42 336-374 (859)
97 PF12325 TMF_TATA_bd: TATA ele 79.2 23 0.0005 26.2 10.4 100 5-117 11-110 (120)
98 PRK10559 p-hydroxybenzoic acid 79.0 20 0.00043 29.4 8.8 17 47-63 122-138 (310)
99 TIGR03752 conj_TIGR03752 integ 78.7 35 0.00075 31.0 10.8 30 11-40 67-96 (472)
100 PF05262 Borrelia_P83: Borreli 78.7 42 0.00091 30.4 11.3 7 14-20 185-191 (489)
101 smart00787 Spc7 Spc7 kinetocho 78.5 40 0.00087 28.5 16.1 60 60-119 203-262 (312)
102 PF11932 DUF3450: Protein of u 78.4 32 0.00069 27.3 11.0 62 50-111 38-99 (251)
103 KOG4674|consensus 78.3 87 0.0019 33.0 14.4 93 15-109 1241-1341(1822)
104 TIGR00998 8a0101 efflux pump m 78.3 33 0.00071 27.5 15.0 10 20-29 83-92 (334)
105 PF12325 TMF_TATA_bd: TATA ele 78.2 25 0.00054 26.0 13.8 50 45-94 14-63 (120)
106 PF10186 Atg14: UV radiation r 77.5 32 0.00069 26.8 14.9 23 9-31 26-48 (302)
107 PRK09578 periplasmic multidrug 77.2 29 0.00062 28.9 9.4 14 102-115 152-165 (385)
108 cd07658 F-BAR_NOSTRIN The F-BA 76.3 38 0.00082 27.1 11.1 40 82-121 171-210 (239)
109 PRK11556 multidrug efflux syst 76.0 33 0.00071 29.3 9.5 24 95-118 169-192 (415)
110 KOG0161|consensus 75.7 78 0.0017 33.4 13.4 68 45-112 1693-1767(1930)
111 PF00038 Filament: Intermediat 75.4 41 0.00088 27.0 14.3 85 21-105 22-112 (312)
112 PRK10476 multidrug resistance 75.1 44 0.00096 27.3 15.7 22 16-37 85-106 (346)
113 PF12718 Tropomyosin_1: Tropom 74.6 34 0.00073 25.7 14.8 27 80-106 78-104 (143)
114 cd07647 F-BAR_PSTPIP The F-BAR 74.5 41 0.00089 26.6 13.9 72 47-120 120-191 (239)
115 cd07675 F-BAR_FNBP1L The F-BAR 74.3 48 0.0011 27.4 12.0 22 84-105 164-185 (252)
116 PF05529 Bap31: B-cell recepto 73.9 37 0.0008 25.8 8.6 61 47-107 125-186 (192)
117 PRK15422 septal ring assembly 73.5 29 0.00063 24.5 10.4 72 49-120 6-77 (79)
118 PF05529 Bap31: B-cell recepto 73.5 36 0.00079 25.9 8.4 32 88-119 160-191 (192)
119 KOG0980|consensus 73.4 99 0.0021 30.6 15.7 9 87-95 471-479 (980)
120 PF09730 BicD: Microtubule-ass 73.3 87 0.0019 29.8 14.9 34 70-103 116-149 (717)
121 PF02050 FliJ: Flagellar FliJ 73.1 24 0.00051 23.2 13.3 19 16-34 11-29 (123)
122 COG1566 EmrA Multidrug resista 72.6 41 0.00089 29.1 9.3 23 45-67 149-171 (352)
123 PRK15136 multidrug efflux syst 72.6 59 0.0013 27.6 12.3 30 45-74 156-185 (390)
124 PRK10559 p-hydroxybenzoic acid 72.6 46 0.00099 27.3 9.3 9 104-112 137-145 (310)
125 PF08826 DMPK_coil: DMPK coile 71.6 27 0.00058 23.2 9.2 12 96-107 46-57 (61)
126 KOG0977|consensus 71.3 87 0.0019 29.0 14.1 18 17-34 106-123 (546)
127 PF15066 CAGE1: Cancer-associa 71.3 57 0.0012 30.0 10.2 43 48-90 391-433 (527)
128 KOG0161|consensus 71.2 1.5E+02 0.0032 31.5 16.2 11 16-26 1413-1423(1930)
129 PRK09859 multidrug efflux syst 71.1 52 0.0011 27.5 9.4 27 83-109 138-164 (385)
130 PF10498 IFT57: Intra-flagella 71.0 69 0.0015 27.7 14.7 92 29-120 218-318 (359)
131 cd07651 F-BAR_PombeCdc15_like 70.9 49 0.0011 25.9 11.0 68 10-77 107-180 (236)
132 TIGR00999 8a0102 Membrane Fusi 70.5 46 0.001 25.5 8.6 58 12-69 18-76 (265)
133 KOG2264|consensus 70.5 24 0.00052 33.6 7.9 57 61-117 93-149 (907)
134 KOG0999|consensus 70.2 1E+02 0.0022 29.4 14.2 29 14-42 47-75 (772)
135 KOG0995|consensus 70.1 96 0.0021 29.0 15.4 35 81-115 338-372 (581)
136 TIGR02971 heterocyst_DevB ABC 70.0 56 0.0012 26.3 13.5 18 12-29 57-74 (327)
137 PRK03598 putative efflux pump 69.8 58 0.0013 26.4 14.6 16 19-34 83-98 (331)
138 TIGR00998 8a0101 efflux pump m 69.6 56 0.0012 26.1 12.6 19 47-65 146-164 (334)
139 PF06160 EzrA: Septation ring 69.4 86 0.0019 28.2 11.9 113 10-122 306-433 (560)
140 PRK11281 hypothetical protein; 69.2 1.2E+02 0.0025 30.3 12.5 26 47-72 80-105 (1113)
141 PF11180 DUF2968: Protein of u 69.1 60 0.0013 26.3 12.8 56 50-105 122-177 (192)
142 PF08614 ATG16: Autophagy prot 69.1 50 0.0011 25.4 10.1 59 48-106 117-175 (194)
143 PRK11281 hypothetical protein; 68.8 1.3E+02 0.0028 30.0 12.8 54 52-105 126-179 (1113)
144 KOG4403|consensus 68.4 1E+02 0.0022 28.5 12.9 36 21-62 239-274 (575)
145 TIGR01730 RND_mfp RND family e 68.4 55 0.0012 25.5 8.9 23 15-37 69-91 (322)
146 PF14662 CCDC155: Coiled-coil 67.3 66 0.0014 26.1 15.3 104 13-116 25-136 (193)
147 KOG3647|consensus 67.2 46 0.001 28.9 8.4 51 62-112 113-163 (338)
148 KOG0977|consensus 66.6 1.1E+02 0.0024 28.3 14.6 18 96-113 169-186 (546)
149 KOG0018|consensus 66.2 1.5E+02 0.0033 29.8 12.7 74 48-121 677-750 (1141)
150 PF15066 CAGE1: Cancer-associa 66.1 1.1E+02 0.0024 28.2 13.0 35 6-40 400-434 (527)
151 cd07655 F-BAR_PACSIN The F-BAR 65.8 54 0.0012 26.4 8.2 46 75-120 140-192 (258)
152 PF05911 DUF869: Plant protein 65.8 1.3E+02 0.0028 28.9 14.8 74 47-120 617-690 (769)
153 PF13851 GAS: Growth-arrest sp 65.7 65 0.0014 25.4 15.4 71 48-118 87-165 (201)
154 PF14197 Cep57_CLD_2: Centroso 65.4 39 0.00084 22.7 9.1 55 47-101 12-66 (69)
155 KOG0982|consensus 64.5 1.2E+02 0.0025 27.9 11.9 63 47-109 318-387 (502)
156 KOG0432|consensus 64.3 26 0.00056 34.5 7.0 69 3-73 923-991 (995)
157 PF09730 BicD: Microtubule-ass 64.3 1.4E+02 0.0029 28.6 15.1 98 12-109 354-453 (717)
158 PF03962 Mnd1: Mnd1 family; I 63.9 69 0.0015 25.0 9.7 16 19-34 71-86 (188)
159 KOG0978|consensus 63.6 1.4E+02 0.003 28.5 14.2 37 4-40 462-498 (698)
160 PF04849 HAP1_N: HAP1 N-termin 63.5 97 0.0021 26.6 13.1 51 47-97 241-291 (306)
161 cd07672 F-BAR_PSTPIP2 The F-BA 62.5 82 0.0018 25.4 10.3 71 48-120 122-192 (240)
162 TIGR01730 RND_mfp RND family e 62.3 73 0.0016 24.8 9.3 14 103-116 116-129 (322)
163 cd07676 F-BAR_FBP17 The F-BAR 60.2 93 0.002 25.3 12.4 21 99-119 166-186 (253)
164 PF14257 DUF4349: Domain of un 58.7 61 0.0013 25.8 7.3 49 15-63 137-185 (262)
165 TIGR03752 conj_TIGR03752 integ 58.6 98 0.0021 28.2 9.2 20 48-67 74-93 (472)
166 PF05667 DUF812: Protein of un 58.3 1.6E+02 0.0034 27.3 15.5 77 45-121 392-479 (594)
167 PF01576 Myosin_tail_1: Myosin 58.0 3.3 7.2E-05 39.1 0.0 34 87-120 473-506 (859)
168 cd07591 BAR_Rvs161p The Bin/Am 57.6 56 0.0012 26.1 6.9 58 61-118 109-166 (224)
169 PF05622 HOOK: HOOK protein; 57.5 3.4 7.4E-05 37.7 0.0 28 10-37 200-227 (713)
170 cd07590 BAR_Bin3 The Bin/Amphi 57.0 56 0.0012 26.4 6.9 57 62-118 109-167 (225)
171 PF02183 HALZ: Homeobox associ 56.9 46 0.00099 20.7 5.8 34 72-105 9-42 (45)
172 PF06810 Phage_GP20: Phage min 56.6 86 0.0019 23.8 8.1 23 48-70 21-43 (155)
173 PF05384 DegS: Sensor protein 55.7 95 0.0021 24.1 13.9 36 82-117 84-119 (159)
174 PF00261 Tropomyosin: Tropomyo 55.3 1E+02 0.0023 24.4 15.6 29 92-120 200-228 (237)
175 KOG0933|consensus 52.8 2.6E+02 0.0057 28.3 14.3 72 48-119 788-859 (1174)
176 PF09325 Vps5: Vps5 C terminal 52.8 1E+02 0.0022 23.4 8.0 25 89-113 163-187 (236)
177 PRK10803 tol-pal system protei 52.1 33 0.00071 27.9 4.9 24 70-93 63-86 (263)
178 PF13514 AAA_27: AAA domain 51.9 2.3E+02 0.0051 27.4 15.9 70 9-78 173-273 (1111)
179 PF15294 Leu_zip: Leucine zipp 51.8 1.5E+02 0.0032 25.2 13.1 31 10-40 125-155 (278)
180 PF10458 Val_tRNA-synt_C: Valy 51.8 64 0.0014 20.9 5.9 25 47-71 4-28 (66)
181 PRK15396 murein lipoprotein; P 51.5 80 0.0017 21.9 6.7 21 47-67 25-45 (78)
182 PF06818 Fez1: Fez1; InterPro 51.1 1.3E+02 0.0029 24.4 13.2 96 11-108 11-106 (202)
183 PF10212 TTKRSYEDQ: Predicted 50.1 1.8E+02 0.0039 26.9 9.6 60 48-107 421-480 (518)
184 COG3074 Uncharacterized protei 49.4 91 0.002 22.0 10.3 21 47-67 25-45 (79)
185 PF14662 CCDC155: Coiled-coil 49.2 1.4E+02 0.0031 24.2 13.0 56 60-115 66-128 (193)
186 PF05667 DUF812: Protein of un 49.0 2.2E+02 0.0048 26.3 14.2 100 2-101 386-531 (594)
187 COG2433 Uncharacterized conser 48.7 2.5E+02 0.0053 26.8 10.9 31 90-120 475-505 (652)
188 KOG0995|consensus 48.7 2.4E+02 0.0051 26.5 14.8 30 61-90 332-361 (581)
189 cd07658 F-BAR_NOSTRIN The F-BA 47.2 1.5E+02 0.0032 23.7 8.6 27 46-72 170-196 (239)
190 KOG0962|consensus 46.8 3.4E+02 0.0074 27.9 12.8 26 12-37 821-846 (1294)
191 PF08826 DMPK_coil: DMPK coile 46.3 86 0.0019 20.8 7.5 22 87-108 30-51 (61)
192 PF09311 Rab5-bind: Rabaptin-l 46.2 12 0.00025 28.9 1.3 60 52-111 13-72 (181)
193 cd07588 BAR_Amphiphysin The Bi 45.8 1.3E+02 0.0027 24.2 7.2 58 62-119 105-162 (211)
194 PF05615 THOC7: Tho complex su 45.5 1.1E+02 0.0025 22.0 10.9 58 56-113 55-112 (139)
195 PF08647 BRE1: BRE1 E3 ubiquit 44.6 1.1E+02 0.0023 21.4 13.3 57 47-103 24-80 (96)
196 COG1566 EmrA Multidrug resista 44.4 2.1E+02 0.0046 24.8 13.3 24 18-41 92-115 (352)
197 PRK09973 putative outer membra 44.4 1.1E+02 0.0025 21.7 6.5 15 75-89 52-66 (85)
198 TIGR02231 conserved hypothetic 44.1 2.2E+02 0.0048 25.0 11.0 31 11-41 72-102 (525)
199 cd07657 F-BAR_Fes_Fer The F-BA 43.3 1.7E+02 0.0038 23.5 13.8 103 10-119 65-184 (237)
200 PF10212 TTKRSYEDQ: Predicted 43.1 2.7E+02 0.006 25.7 13.3 90 11-102 421-514 (518)
201 PRK13729 conjugal transfer pil 42.4 2.1E+02 0.0046 26.1 8.8 20 87-106 102-121 (475)
202 KOG0979|consensus 42.1 3.8E+02 0.0082 27.0 12.3 17 19-35 267-283 (1072)
203 PHA01750 hypothetical protein 42.1 91 0.002 21.7 5.1 36 72-107 39-74 (75)
204 PF05335 DUF745: Protein of un 41.7 1.8E+02 0.0039 23.1 14.8 103 8-117 65-172 (188)
205 KOG4674|consensus 41.6 4.7E+02 0.01 28.0 15.8 28 13-40 762-789 (1822)
206 PF13815 Dzip-like_N: Iguana/D 41.5 1.3E+02 0.0028 21.5 8.6 42 78-119 76-117 (118)
207 TIGR02231 conserved hypothetic 41.4 2.5E+02 0.0053 24.7 12.1 26 18-43 72-97 (525)
208 PRK14162 heat shock protein Gr 41.3 90 0.002 24.9 5.7 37 45-81 37-73 (194)
209 cd07679 F-BAR_PACSIN2 The F-BA 40.8 2.2E+02 0.0047 23.9 13.2 40 82-121 168-207 (258)
210 PF14915 CCDC144C: CCDC144C pr 40.6 2.4E+02 0.0053 24.4 13.1 109 4-114 120-246 (305)
211 cd07612 BAR_Bin2 The Bin/Amphi 40.6 1.7E+02 0.0038 23.7 7.3 59 61-119 104-162 (211)
212 PF05791 Bacillus_HBL: Bacillu 40.3 1.7E+02 0.0037 22.5 7.9 64 47-113 117-180 (184)
213 KOG0804|consensus 39.7 3.1E+02 0.0067 25.3 10.6 76 46-121 346-421 (493)
214 PF10498 IFT57: Intra-flagella 39.3 2.5E+02 0.0055 24.3 13.1 9 29-37 239-247 (359)
215 PF07106 TBPIP: Tat binding pr 38.5 1.7E+02 0.0036 21.9 11.7 68 7-74 69-136 (169)
216 PRK14148 heat shock protein Gr 38.5 1.2E+02 0.0027 24.2 6.1 36 46-81 39-74 (195)
217 PRK10803 tol-pal system protei 38.4 2.2E+02 0.0047 23.2 9.2 27 53-79 60-86 (263)
218 cd07672 F-BAR_PSTPIP2 The F-BA 38.1 2.1E+02 0.0046 23.0 12.8 22 48-69 155-176 (240)
219 PF15186 TEX13: Testis-express 37.7 2E+02 0.0044 22.6 8.8 37 82-118 106-146 (152)
220 PF15070 GOLGA2L5: Putative go 37.6 3.4E+02 0.0075 25.3 14.1 17 14-30 84-100 (617)
221 PF15237 PTRF_SDPR: PTRF/SDPR 37.2 98 0.0021 26.0 5.5 67 1-77 17-88 (246)
222 TIGR03794 NHPM_micro_HlyD NHPM 36.7 2.6E+02 0.0057 23.6 12.9 23 97-119 228-250 (421)
223 cd07680 F-BAR_PACSIN1 The F-BA 36.3 2.5E+02 0.0053 23.2 13.3 39 82-120 168-206 (258)
224 PF15619 Lebercilin: Ciliary p 35.9 2.2E+02 0.0047 22.5 15.3 18 14-31 16-33 (194)
225 KOG0243|consensus 35.7 4.7E+02 0.01 26.3 13.7 97 22-118 409-512 (1041)
226 PF09325 Vps5: Vps5 C terminal 35.5 2E+02 0.0043 21.8 10.4 32 12-43 123-154 (236)
227 KOG0963|consensus 35.3 4E+02 0.0087 25.3 13.8 71 48-119 279-353 (629)
228 PRK15136 multidrug efflux syst 35.2 2.8E+02 0.006 23.5 15.4 7 20-26 102-108 (390)
229 PF06160 EzrA: Septation ring 34.5 3.5E+02 0.0075 24.4 12.3 43 78-120 447-489 (560)
230 PF07106 TBPIP: Tat binding pr 34.3 2E+02 0.0042 21.5 10.0 29 48-76 80-108 (169)
231 PF05600 DUF773: Protein of un 34.1 3.6E+02 0.0077 24.4 9.2 64 44-107 429-492 (507)
232 cd07679 F-BAR_PACSIN2 The F-BA 34.1 2.8E+02 0.0061 23.2 8.0 35 45-79 166-200 (258)
233 PF15186 TEX13: Testis-express 34.0 2.3E+02 0.0051 22.2 8.8 37 47-83 106-146 (152)
234 PRK05729 valS valyl-tRNA synth 33.4 1.6E+02 0.0035 27.9 6.9 28 45-72 809-836 (874)
235 PRK14163 heat shock protein Gr 33.4 1.4E+02 0.003 24.4 5.7 34 47-80 40-73 (214)
236 PF06810 Phage_GP20: Phage min 33.3 2.2E+02 0.0047 21.7 8.6 29 12-40 15-43 (155)
237 cd07590 BAR_Bin3 The Bin/Amphi 33.2 2.3E+02 0.0049 23.0 6.9 28 13-40 68-96 (225)
238 PF05615 THOC7: Tho complex su 33.1 1.9E+02 0.0041 20.9 9.3 42 56-97 69-110 (139)
239 PF10205 KLRAQ: Predicted coil 33.0 2E+02 0.0043 21.1 10.9 50 43-92 22-71 (102)
240 PRK14900 valS valyl-tRNA synth 33.0 2.2E+02 0.0048 27.9 7.9 64 8-73 840-903 (1052)
241 PF05791 Bacillus_HBL: Bacillu 32.9 2.3E+02 0.0049 21.8 9.5 17 102-118 155-171 (184)
242 PF09738 DUF2051: Double stran 32.6 3.1E+02 0.0068 23.3 9.4 49 71-119 99-149 (302)
243 KOG0432|consensus 32.3 1.4E+02 0.003 29.7 6.3 62 45-107 928-990 (995)
244 PLN02943 aminoacyl-tRNA ligase 32.2 1.8E+02 0.0038 28.2 7.0 28 45-72 887-914 (958)
245 PRK14139 heat shock protein Gr 31.8 1.6E+02 0.0035 23.3 5.7 36 45-80 30-65 (185)
246 PRK09634 nusB transcription an 31.8 1.5E+02 0.0033 23.8 5.7 52 47-98 40-91 (207)
247 PRK09973 putative outer membra 31.5 1.9E+02 0.0042 20.5 6.8 21 86-106 49-69 (85)
248 PF05008 V-SNARE: Vesicle tran 31.4 1.5E+02 0.0032 19.2 6.7 26 48-73 26-51 (79)
249 PRK14140 heat shock protein Gr 31.1 1.6E+02 0.0034 23.4 5.6 37 44-80 34-70 (191)
250 PF08172 CASP_C: CASP C termin 30.4 3.1E+02 0.0067 22.5 10.2 87 6-92 2-131 (248)
251 PF07889 DUF1664: Protein of u 30.3 2.4E+02 0.0051 21.2 8.8 54 47-107 68-121 (126)
252 PRK14145 heat shock protein Gr 30.1 1.9E+02 0.0042 23.2 5.9 38 44-81 42-79 (196)
253 cd07647 F-BAR_PSTPIP The F-BAR 30.1 2.8E+02 0.006 21.9 13.3 67 47-120 106-177 (239)
254 PF13514 AAA_27: AAA domain 29.7 5.3E+02 0.012 25.1 15.4 110 11-120 243-384 (1111)
255 PF10168 Nup88: Nuclear pore c 29.6 4.9E+02 0.011 24.6 10.3 17 102-118 638-654 (717)
256 PF13870 DUF4201: Domain of un 29.5 2.4E+02 0.0053 21.1 15.8 24 17-40 6-29 (177)
257 PRK14155 heat shock protein Gr 29.5 1.3E+02 0.0027 24.3 4.8 32 48-79 14-45 (208)
258 KOG3771|consensus 29.3 2.1E+02 0.0045 26.1 6.6 35 45-79 141-175 (460)
259 KOG2264|consensus 29.0 2.7E+02 0.006 26.9 7.5 51 47-97 93-143 (907)
260 smart00338 BRLZ basic region l 28.8 1.6E+02 0.0034 18.6 8.6 50 70-119 14-63 (65)
261 KOG0971|consensus 28.7 6.4E+02 0.014 25.7 14.1 18 25-42 256-273 (1243)
262 PF15070 GOLGA2L5: Putative go 28.7 4.9E+02 0.011 24.3 13.6 22 47-68 223-244 (617)
263 PRK15396 murein lipoprotein; P 28.5 2E+02 0.0044 19.9 7.2 20 48-67 33-52 (78)
264 KOG0999|consensus 28.3 5.5E+02 0.012 24.7 14.9 26 91-116 109-134 (772)
265 PF13851 GAS: Growth-arrest sp 28.2 3E+02 0.0064 21.7 14.8 39 70-108 95-133 (201)
266 PRK00888 ftsB cell division pr 27.9 1.1E+02 0.0024 21.8 3.8 29 9-37 33-61 (105)
267 PF12808 Mto2_bdg: Micro-tubul 27.6 1.1E+02 0.0023 19.9 3.4 23 16-38 28-50 (52)
268 PF00170 bZIP_1: bZIP transcri 27.5 1.7E+02 0.0036 18.5 9.0 47 73-119 17-63 (64)
269 PRK14143 heat shock protein Gr 27.4 2.2E+02 0.0047 23.4 5.9 33 47-79 67-99 (238)
270 PF02183 HALZ: Homeobox associ 27.2 1.6E+02 0.0035 18.2 5.5 32 87-118 10-41 (45)
271 PF05010 TACC: Transforming ac 26.8 3.4E+02 0.0074 21.9 15.8 25 95-119 160-184 (207)
272 PRK14160 heat shock protein Gr 26.6 3.3E+02 0.0071 22.1 6.8 33 47-79 61-93 (211)
273 PF13870 DUF4201: Domain of un 26.4 2.8E+02 0.0061 20.8 14.1 42 47-88 91-132 (177)
274 PTZ00419 valyl-tRNA synthetase 26.3 2.9E+02 0.0063 26.7 7.3 28 45-72 927-954 (995)
275 KOG2856|consensus 26.0 4.6E+02 0.01 23.9 8.0 75 5-79 130-209 (472)
276 TIGR01000 bacteriocin_acc bact 25.9 4.3E+02 0.0093 22.7 13.8 28 93-120 288-315 (457)
277 PRK14147 heat shock protein Gr 25.8 1.9E+02 0.0041 22.4 5.1 32 48-79 19-50 (172)
278 PF05622 HOOK: HOOK protein; 25.6 23 0.0005 32.5 0.0 9 12-20 181-189 (713)
279 PF06632 XRCC4: DNA double-str 25.5 32 0.00069 29.7 0.8 34 2-35 136-169 (342)
280 PRK14161 heat shock protein Gr 25.2 3.4E+02 0.0073 21.3 6.9 28 45-72 24-51 (178)
281 PF03245 Phage_lysis: Bacterio 25.0 2.8E+02 0.006 20.2 8.6 20 86-105 39-58 (125)
282 PF07412 Geminin: Geminin; In 24.9 3.8E+02 0.0082 21.8 8.0 47 70-116 113-159 (200)
283 PF09726 Macoilin: Transmembra 24.6 6E+02 0.013 24.0 14.9 32 87-118 543-574 (697)
284 TIGR01069 mutS2 MutS2 family p 24.6 6.1E+02 0.013 24.1 12.8 17 18-34 512-528 (771)
285 PRK14154 heat shock protein Gr 24.5 2.3E+02 0.0051 22.9 5.6 37 45-81 50-86 (208)
286 KOG0964|consensus 24.5 7.7E+02 0.017 25.2 13.8 13 55-67 700-712 (1200)
287 TIGR00634 recN DNA repair prot 24.4 5.1E+02 0.011 23.1 11.9 20 47-66 301-320 (563)
288 KOG0964|consensus 24.2 7.8E+02 0.017 25.2 12.8 22 15-36 676-697 (1200)
289 PF01025 GrpE: GrpE; InterPro 24.2 1.8E+02 0.0039 21.2 4.5 28 47-74 18-45 (165)
290 PRK14158 heat shock protein Gr 23.9 2.8E+02 0.0061 22.1 5.8 34 47-80 40-73 (194)
291 COG4985 ABC-type phosphate tra 23.6 4.7E+02 0.01 22.4 9.1 22 100-121 225-246 (289)
292 cd07611 BAR_Amphiphysin_I_II T 23.6 4E+02 0.0087 21.6 6.9 54 62-115 105-158 (211)
293 COG3879 Uncharacterized protei 23.5 4.2E+02 0.0091 22.2 7.0 21 47-67 57-77 (247)
294 KOG0994|consensus 23.4 9E+02 0.019 25.6 15.1 110 12-121 1544-1672(1758)
295 KOG3156|consensus 23.2 4.4E+02 0.0095 21.9 7.8 36 83-118 102-138 (220)
296 PF06156 DUF972: Protein of un 22.9 3E+02 0.0065 19.9 7.5 48 48-95 9-56 (107)
297 PHA01750 hypothetical protein 22.7 2.4E+02 0.0052 19.7 4.6 35 87-121 40-74 (75)
298 COG1382 GimC Prefoldin, chaper 22.6 3.4E+02 0.0073 20.3 11.0 32 87-118 75-106 (119)
299 PRK14141 heat shock protein Gr 22.5 2.3E+02 0.0049 22.9 5.1 28 52-79 36-63 (209)
300 KOG4643|consensus 22.4 8.5E+02 0.019 24.9 14.5 103 15-121 406-513 (1195)
301 PRK05729 valS valyl-tRNA synth 22.3 4.5E+02 0.0098 24.9 7.7 54 15-68 809-867 (874)
302 PF10481 CENP-F_N: Cenp-F N-te 22.1 5.3E+02 0.011 22.4 14.2 107 14-122 15-128 (307)
303 PRK14162 heat shock protein Gr 21.9 4.2E+02 0.009 21.1 6.7 31 47-77 46-76 (194)
304 cd07664 BAR_SNX2 The Bin/Amphi 21.6 4.4E+02 0.0095 21.3 8.1 64 11-78 120-183 (234)
305 PF01920 Prefoldin_2: Prefoldi 21.5 2.5E+02 0.0055 18.5 11.0 32 9-40 4-35 (106)
306 PF09789 DUF2353: Uncharacteri 21.4 5.4E+02 0.012 22.2 10.4 21 19-39 81-101 (319)
307 PF08172 CASP_C: CASP C termin 21.3 4.6E+02 0.01 21.5 7.6 46 70-115 81-126 (248)
308 PRK14151 heat shock protein Gr 21.3 2.8E+02 0.0061 21.6 5.3 32 48-79 21-52 (176)
309 TIGR03007 pepcterm_ChnLen poly 20.9 5.4E+02 0.012 22.1 14.6 27 94-120 353-379 (498)
310 PF04420 CHD5: CHD5-like prote 20.7 3.6E+02 0.0078 20.3 5.7 58 13-77 36-96 (161)
311 cd07675 F-BAR_FNBP1L The F-BAR 20.7 4.9E+02 0.011 21.5 14.3 46 75-120 134-186 (252)
312 PF07889 DUF1664: Protein of u 20.4 3.8E+02 0.0082 20.1 11.5 34 84-117 84-117 (126)
313 TIGR01010 BexC_CtrB_KpsE polys 20.3 5E+02 0.011 21.4 13.1 21 20-40 173-193 (362)
314 PF04420 CHD5: CHD5-like prote 20.1 3.9E+02 0.0085 20.1 6.6 28 85-112 69-96 (161)
No 1
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.02 E-value=2.6e-09 Score=98.25 Aligned_cols=102 Identities=33% Similarity=0.484 Sum_probs=86.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhHHHHHhhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy2823 15 LLSERDKAVLEMDKSKEELERSQATLATLS------TSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQ 88 (122)
Q Consensus 15 l~~E~eka~~e~ek~~eELErsQatl~~l~------tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ 88 (122)
|++.+.++..|+++|+.||+++++-++... .+.|+++-+...+..++++.+++.++++++.++++++++++.||
T Consensus 1 Lq~ql~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~Lq 80 (775)
T PF10174_consen 1 LQAQLERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQ 80 (775)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456778888888888888888888886532 46899999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhhHHHHHHHHH
Q psy2823 89 EKVEKSQGEVYRLKAKLENTQGEMESMKE 117 (122)
Q Consensus 89 ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ 117 (122)
++| ++|.+++||+.++++++++.+.+..
T Consensus 81 eEL-r~q~e~~rL~~~~e~~~~e~e~l~~ 108 (775)
T PF10174_consen 81 EEL-RAQRELNRLQQELEKAQYEFESLQE 108 (775)
T ss_pred HHH-HHhhHHHHHHHHhhhcccccchhhh
Confidence 999 9999999999987777666655444
No 2
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.73 E-value=1.5e-07 Score=86.95 Aligned_cols=104 Identities=29% Similarity=0.385 Sum_probs=63.4
Q ss_pred CchHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2823 8 PPGTLSRLLSERDKAVLEMDKSKEELERSQATLATL-----STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRS 82 (122)
Q Consensus 8 ~Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~~l-----~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~ 82 (122)
++.++..++.+..++..+++.++++| |+|..+..| .++.+.+.++. +|++.+.+.|++ +++|+++.
T Consensus 58 ~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~-------~E~er~~~ 128 (775)
T PF10174_consen 58 LKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQ-------AERERLQR 128 (775)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHH-------HHHHHHHH
Confidence 44455555555555555566666666 655555433 23344444444 555555555554 44455555
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 83 EEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 83 e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
++..+++.++++|..+.+++..|+.+++++++|.+.|+
T Consensus 129 El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~ 166 (775)
T PF10174_consen 129 ELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQ 166 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55557778888888888888888888888888877664
No 3
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.58 E-value=0.14 Score=45.38 Aligned_cols=112 Identities=25% Similarity=0.378 Sum_probs=60.2
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q psy2823 9 PGTLSRLLSERDKAVLEMDKSKEELERSQATLATL-----STSAELDRLQEKYDKTCADLRRAQAELRVVQADNE----- 78 (122)
Q Consensus 9 Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~~l-----~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e----- 78 (122)
++.+.....|++.+...+++...|+...+.....| ....++.+++++...+.+.+..+..++..++.+++
T Consensus 280 ~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~ 359 (522)
T PF05701_consen 280 QSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAE 359 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhh
Confidence 34466666667777777766666666666555433 23455555555555555544444444444444442
Q ss_pred --HhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 79 --RVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 79 --~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
++.....-+...|.....+....+.+.+.++.++.+++.+++
T Consensus 360 e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e 403 (522)
T PF05701_consen 360 EEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAE 403 (522)
T ss_pred hcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455555555555555555555555555555544
No 4
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.37 E-value=0.3 Score=37.22 Aligned_cols=92 Identities=26% Similarity=0.365 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy2823 10 GTLSRLLSERDKAVLEMDKSKEELERSQATLATL-----STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEE 84 (122)
Q Consensus 10 ~~~~rl~~E~eka~~e~ek~~eELErsQatl~~l-----~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~ 84 (122)
+.+-|..++.+.+......+.-+|+.+|+....+ ++..++..+.+++....++++++..+|..+..+.+..-..+
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l 89 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL 89 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888888888889999888877443 67789999999999999999999999988888887766666
Q ss_pred HHHHHH---HHhhHHHHHHH
Q psy2823 85 KTMQEK---VEKSQGEVYRL 101 (122)
Q Consensus 85 ~~lQ~e---lEksQ~e~~rl 101 (122)
+..+.+ |+.+.+.+.++
T Consensus 90 q~~q~kv~eLE~~~~~~~~~ 109 (140)
T PF10473_consen 90 QKKQEKVSELESLNSSLENL 109 (140)
T ss_pred HHHHHHHHHHHHHhHHHHHH
Confidence 655443 44444444444
No 5
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.36 E-value=0.28 Score=43.50 Aligned_cols=71 Identities=23% Similarity=0.402 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHH
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKE 117 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ 117 (122)
.||+.+...|+++..++..++...+-...++++...++.+++.+...+.+.+..|..++.++..+++.+..
T Consensus 288 ~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~ 358 (522)
T PF05701_consen 288 KELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKA 358 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHh
Confidence 45555555555555555555555666666666666666666666666666666666666666666655443
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.33 E-value=0.35 Score=43.96 Aligned_cols=17 Identities=12% Similarity=0.263 Sum_probs=6.3
Q ss_pred HHHHHhHHHHHHHHHHH
Q psy2823 17 SERDKAVLEMDKSKEEL 33 (122)
Q Consensus 17 ~E~eka~~e~ek~~eEL 33 (122)
.+.+.+..++..+...+
T Consensus 677 ~e~~~l~~~~~~l~~~l 693 (1179)
T TIGR02168 677 REIEELEEKIEELEEKI 693 (1179)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 7
>KOG1962|consensus
Probab=96.25 E-value=0.1 Score=42.53 Aligned_cols=63 Identities=30% Similarity=0.368 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHH
Q psy2823 52 LQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMES 114 (122)
Q Consensus 52 lQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~ 114 (122)
+.++.|+.-.++.++..+++..+.+++.++.+...+.+..+..+-+..||-++..+.|++++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 555666666666666666666667777777777778888888888888888888888877653
No 8
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.22 E-value=0.25 Score=36.43 Aligned_cols=73 Identities=22% Similarity=0.380 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHH----hhHHHHHHHHHHH
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLE----NTQGEMESMKEEY 119 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE----~aQ~e~e~l~~El 119 (122)
..+.++.+++..+..++.-++......+..+.....-+....+++.+.++.+....+.+. +---++++|++.|
T Consensus 73 ~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 73 NDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566667777777777777777777777777777777777777777777776666655443 3344566666654
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.14 E-value=0.5 Score=42.97 Aligned_cols=27 Identities=7% Similarity=0.128 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhH
Q psy2823 11 TLSRLLSERDKAVLEMDKSKEELERSQ 37 (122)
Q Consensus 11 ~~~rl~~E~eka~~e~ek~~eELErsQ 37 (122)
.+..+..+++.+...+..+..++....
T Consensus 678 e~~~l~~~~~~l~~~l~~~~~~~~~~~ 704 (1179)
T TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELR 704 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443333
No 10
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.08 E-value=0.27 Score=37.51 Aligned_cols=73 Identities=23% Similarity=0.381 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY 119 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El 119 (122)
++-|-+..++.....+|.-.+..++.+-.+.+.++..+..|.++++..=..+.+|..+|.+.-++.+.|-..+
T Consensus 17 ~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l 89 (140)
T PF10473_consen 17 SEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL 89 (140)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666666666666666777766666666666666666666655554444
No 11
>PRK11637 AmiB activator; Provisional
Probab=96.00 E-value=0.36 Score=41.11 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q psy2823 55 KYDKTCADLRRAQ 67 (122)
Q Consensus 55 kldk~~~Elrr~Q 67 (122)
++..+...+..++
T Consensus 83 qi~~~~~~i~~~~ 95 (428)
T PRK11637 83 AISQASRKLRETQ 95 (428)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 12
>PRK11637 AmiB activator; Provisional
Probab=95.77 E-value=0.22 Score=42.42 Aligned_cols=66 Identities=6% Similarity=0.192 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHH
Q psy2823 48 ELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEME 113 (122)
Q Consensus 48 EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e 113 (122)
++..++.++..+..++..+..++..++..+.....++..++.++...+.++..++.+++..+..+.
T Consensus 62 ~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 62 SVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444444444444444444444444444444444443
No 13
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.38 E-value=1.2 Score=36.29 Aligned_cols=74 Identities=19% Similarity=0.323 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 46 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEK-VEKSQGEVYRLKAKLENTQGEMESMKEEY 119 (122)
Q Consensus 46 q~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~e-lEksQ~e~~rlq~elE~aQ~e~e~l~~El 119 (122)
..++...+..+..+.+++..++.++......++.++.++..+... .......+..+..++..++..+..++..+
T Consensus 195 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 195 RLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555444444444333322211 11222333444444455554444444443
No 14
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.14 E-value=2 Score=38.66 Aligned_cols=94 Identities=23% Similarity=0.340 Sum_probs=54.7
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy2823 9 PGTLSRLLSERDKAVLEMDKSKEELERSQATLAT-----LSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSE 83 (122)
Q Consensus 9 Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~~-----l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e 83 (122)
++......+|++++-.|+++.++|-+-.+..+.. ++++.++-++++....++++|--.-++....-++.+.++.+
T Consensus 94 ~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~ 173 (499)
T COG4372 94 QGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQAS 173 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556667777777777777777776666632 36777777777777777666655555555544555444444
Q ss_pred HHHHHHHHHhhHHHHHHHH
Q psy2823 84 EKTMQEKVEKSQGEVYRLK 102 (122)
Q Consensus 84 ~~~lQ~elEksQ~e~~rlq 102 (122)
-..||--.+..-+++.+|.
T Consensus 174 ~k~LQ~s~~Qlk~~~~~L~ 192 (499)
T COG4372 174 QKQLQASATQLKSQVLDLK 192 (499)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444433333333333333
No 15
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=94.57 E-value=1.5 Score=35.62 Aligned_cols=104 Identities=23% Similarity=0.328 Sum_probs=58.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhH
Q psy2823 16 LSERDKAVLEMDKSKEELERSQATLATL-----STSAELDRLQEKYDKTCADLRRAQAELRVVQA-------DNERVRSE 83 (122)
Q Consensus 16 ~~E~eka~~e~ek~~eELErsQatl~~l-----~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~-------~~e~~q~e 83 (122)
-..+...+.++.+.+.+|.+++.+...| .++.+-..|..+...+..+.+++......+.. .+......
T Consensus 11 e~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~ 90 (246)
T PF00769_consen 11 EERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAE 90 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666777777777777666443 24445555555555555555555544333333 33444556
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 84 EKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY 119 (122)
Q Consensus 84 ~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El 119 (122)
+.+|....+..-.++.+++.++..++......+.+|
T Consensus 91 i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 91 IARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666777777777777777666666554
No 16
>KOG0996|consensus
Probab=94.38 E-value=2.2 Score=42.42 Aligned_cols=113 Identities=17% Similarity=0.245 Sum_probs=72.0
Q ss_pred CCchHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q psy2823 7 PPPGTLSRLLSERDKAVLEMDKSKEELERSQATLAT--LSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNER----- 79 (122)
Q Consensus 7 ~~Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~~--l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~----- 79 (122)
.+...++.+++|.+++...+++.+.+|+.-+..|.. ..-..+++++++++-..-..+-.+..++.+.+++++=
T Consensus 437 ~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~ 516 (1293)
T KOG0996|consen 437 KARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRH 516 (1293)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777777777777776632 3345678888888877777777777777777777743
Q ss_pred --hhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 80 --VRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY 119 (122)
Q Consensus 80 --~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El 119 (122)
....++.++..|..+.......++.+...-.++.+++.|+
T Consensus 517 ~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~ 558 (1293)
T KOG0996|consen 517 ETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQEL 558 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3334455555555555555555555555555555544443
No 17
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.29 E-value=2.5 Score=34.52 Aligned_cols=17 Identities=18% Similarity=0.108 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhHHHHHH
Q psy2823 12 LSRLLSERDKAVLEMDK 28 (122)
Q Consensus 12 ~~rl~~E~eka~~e~ek 28 (122)
+..+.....++..++.+
T Consensus 83 l~~l~~~~~~l~a~~~~ 99 (423)
T TIGR01843 83 AAELESQVLRLEAEVAR 99 (423)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444433333
No 18
>PRK09039 hypothetical protein; Validated
Probab=94.23 E-value=3 Score=35.30 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHH
Q psy2823 49 LDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGE 97 (122)
Q Consensus 49 ldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e 97 (122)
+..++.+|+...+....++.+....+.+.+..+.++..++..++.+...
T Consensus 118 ~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 118 AGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444443333
No 19
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=94.20 E-value=2.5 Score=34.26 Aligned_cols=59 Identities=19% Similarity=0.339 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy2823 22 AVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQE 89 (122)
Q Consensus 22 a~~e~ek~~eELErsQatl~~l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~ 89 (122)
+...+.+++++..+++ .+|.+.++.++.....+++++.+..........+.....+|..
T Consensus 10 le~rL~q~eee~~~a~---------~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~ 68 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQ---------EALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEE 68 (246)
T ss_dssp HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666555 4555555555555555555555544444443333333333333
No 20
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=93.62 E-value=4.6 Score=36.40 Aligned_cols=64 Identities=19% Similarity=0.282 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhH
Q psy2823 46 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ 109 (122)
Q Consensus 46 q~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ 109 (122)
-.|-+.++++++.+--++-++|-++.++..+..+.++.+..+-++.-++-.+++-|...-...|
T Consensus 115 r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 115 RQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555555555555555544554444444
No 21
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.54 E-value=3.9 Score=35.04 Aligned_cols=102 Identities=21% Similarity=0.250 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhh------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 11 TLSRLLSERDKAVLEMDKSKEELERSQATLATL------------STSAELDRLQEKYDKTCADLRRAQAELRVVQADNE 78 (122)
Q Consensus 11 ~~~rl~~E~eka~~e~ek~~eELErsQatl~~l------------~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e 78 (122)
-|+-|-+-+||+.-|..+-+..||-..|.|... ....|...+=+-++....--.+..-+|..--..+-
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~ 98 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVN 98 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHH
Confidence 467788888999999999999999999998432 23457777778788777777777777777666666
Q ss_pred HhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHH
Q psy2823 79 RVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEM 112 (122)
Q Consensus 79 ~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~ 112 (122)
-.-|++....+.+++...++.|++.+||++|...
T Consensus 99 ~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 99 FLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6778888899999999999999999999998654
No 22
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.52 E-value=2.4 Score=31.85 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=7.0
Q ss_pred HHHHhHHHHHHHHHHHHH
Q psy2823 18 ERDKAVLEMDKSKEELER 35 (122)
Q Consensus 18 E~eka~~e~ek~~eELEr 35 (122)
+...+...+..+.+++..
T Consensus 82 e~~~~~~~l~~l~~el~~ 99 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQ 99 (191)
T ss_pred hHHhHHHHHHHHHHHHHH
Confidence 333333333333333333
No 23
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=93.32 E-value=3.6 Score=33.13 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 44 STSAELDRLQEKYDKTCADLRRAQAELR 71 (122)
Q Consensus 44 ~tq~EldrlQekldk~~~Elrr~Q~ele 71 (122)
-+..++|..+..+..+..++..++..+.
T Consensus 132 iS~~~~d~~~~~~~~a~~~l~~~~~~~~ 159 (327)
T TIGR02971 132 VSASDLDSKALKLRTAEEELEEALASRS 159 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888788777777777776654
No 24
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=93.32 E-value=1 Score=37.64 Aligned_cols=74 Identities=18% Similarity=0.259 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
..+...+.++.+....|..++.+.+....+..+...+....+.+++.+..-+.-|.++..++......+...+.
T Consensus 235 ~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~ 308 (344)
T PF12777_consen 235 EQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLK 308 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhc
Confidence 33444444444444444444444444445555556666667777888888888888888888877777766543
No 25
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.74 E-value=5.1 Score=33.35 Aligned_cols=56 Identities=16% Similarity=0.299 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHH
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLK 102 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq 102 (122)
.+|..+..++.....++...+.++...+.++......++.+..+....+.++..+.
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444434444444444333333333333333333333333
No 26
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.35 E-value=5.7 Score=33.04 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHH
Q psy2823 61 ADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMK 116 (122)
Q Consensus 61 ~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~ 116 (122)
.+|..++.+|.....+++.-+..+..++.++......+..+..+......++..+.
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666655655555555555555555555555555555555555544444
No 27
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=92.24 E-value=10 Score=36.71 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhHHHH
Q psy2823 10 GTLSRLLSERDKAVLEMDKSKEELERSQATL 40 (122)
Q Consensus 10 ~~~~rl~~E~eka~~e~ek~~eELErsQatl 40 (122)
+||...+.+++++...++++.+-|++...-+
T Consensus 165 aGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~ 195 (1163)
T COG1196 165 AGVSKYKERKEEAERKLERTEENLERLEDLL 195 (1163)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777888888888888877777766444
No 28
>KOG1962|consensus
Probab=91.74 E-value=1.5 Score=35.83 Aligned_cols=61 Identities=20% Similarity=0.369 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHH
Q psy2823 46 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLE 106 (122)
Q Consensus 46 q~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE 106 (122)
..+.+.+-+++++..+++++.+.+|+..+.+.+....+++.++.+++..=.+-.+|+...+
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3556666666666666666666666666666666666666666666666666666666554
No 29
>PRK09039 hypothetical protein; Validated
Probab=91.68 E-value=7.5 Score=32.93 Aligned_cols=69 Identities=6% Similarity=0.104 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 52 LQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 52 lQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
++.++.....+|..........+.+..+.+.+++.|...+..++..+.-+.......+..++.+..+|+
T Consensus 114 ~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 114 AEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555666666666666666666666555556666666655554
No 30
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.57 E-value=7.6 Score=32.78 Aligned_cols=74 Identities=24% Similarity=0.358 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhH----HHHHHHHHH
Q psy2823 45 TSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ----GEMESMKEE 118 (122)
Q Consensus 45 tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ----~e~e~l~~E 118 (122)
-+++++++.+++...-.++.....++...+.++..+.+.++....+....++++..+...++... .|+.+|+..
T Consensus 202 d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~ 279 (312)
T smart00787 202 DPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQ 279 (312)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34566677777777666666666666666666666666666666666666665555555554433 344444443
No 31
>KOG0996|consensus
Probab=91.51 E-value=5.7 Score=39.71 Aligned_cols=110 Identities=15% Similarity=0.323 Sum_probs=70.4
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2823 9 PGTLSRLLSERDKAVLEMDKSKEELERSQATLATL------STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRS 82 (122)
Q Consensus 9 Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~~l------~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~ 82 (122)
+..|+.+..|.+.+...--+ +...+..|..+..+ .-.+.++.+.+++++..+++++..+-.........+++.
T Consensus 864 ~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~ 942 (1293)
T KOG0996|consen 864 EEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQK 942 (1293)
T ss_pred HHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHH
Confidence 45566666666666644444 56666666666332 234688999999999999999888777777666677666
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 83 EEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY 119 (122)
Q Consensus 83 e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El 119 (122)
-+..+-.+.+.+-+++.-|..++...-.-...+..+|
T Consensus 943 ~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~ 979 (1293)
T KOG0996|consen 943 KLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEY 979 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6666666666666655555555444444333333333
No 32
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.46 E-value=9.6 Score=38.54 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhH
Q psy2823 59 TCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ 109 (122)
Q Consensus 59 ~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ 109 (122)
....+..+...++.....+.....++..+..+++.+..++..++.++...+
T Consensus 353 l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelq 403 (1486)
T PRK04863 353 YQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQ 403 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333
No 33
>KOG0250|consensus
Probab=91.21 E-value=11 Score=37.19 Aligned_cols=75 Identities=13% Similarity=0.268 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 45 TSAELDRLQEKYDKTCADLRRAQAEL-RVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY 119 (122)
Q Consensus 45 tq~EldrlQekldk~~~Elrr~Q~el-e~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El 119 (122)
..+.++++....|...-.+--.+++. ..+..+++.....+..|..+.+++++.+.+|..++..+..+.....++.
T Consensus 363 ~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~ 438 (1074)
T KOG0250|consen 363 IENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEK 438 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44666666666666666666666666 6667777777777888888888888888888888877777777766665
No 34
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.82 E-value=8.3 Score=31.84 Aligned_cols=14 Identities=29% Similarity=0.366 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhhHH
Q psy2823 83 EEKTMQEKVEKSQG 96 (122)
Q Consensus 83 e~~~lQ~elEksQ~ 96 (122)
++..+.++.++.+.
T Consensus 111 el~~l~~~~~~l~~ 124 (239)
T COG1579 111 ELAELMEEIEKLEK 124 (239)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 35
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=90.76 E-value=13 Score=34.12 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=11.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHHH
Q psy2823 16 LSERDKAVLEMDKSKEELERSQATL 40 (122)
Q Consensus 16 ~~E~eka~~e~ek~~eELErsQatl 40 (122)
......+..++..++.++++.++.|
T Consensus 156 ~~~~~~Le~e~~~l~~~v~~l~~eL 180 (546)
T PF07888_consen 156 LKENEQLEEEVEQLREEVERLEAEL 180 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444455555555544
No 36
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.76 E-value=3.5 Score=34.61 Aligned_cols=56 Identities=16% Similarity=0.353 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhH
Q psy2823 54 EKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ 109 (122)
Q Consensus 54 ekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ 109 (122)
.++..+..++.-+|.+++..+.+.+.+++...-++++.++++.++.+|+.+.+..-
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444333333344444444444444444444443
No 37
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=90.53 E-value=18 Score=35.28 Aligned_cols=103 Identities=18% Similarity=0.370 Sum_probs=47.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHH
Q psy2823 14 RLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKT-MQEKVE 92 (122)
Q Consensus 14 rl~~E~eka~~e~ek~~eELErsQatl~~l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~-lQ~elE 92 (122)
.|..++..+...+.......+.....+... ...++.+...+.++..++..++.++...+.+..+......+ +.+...
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 681 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQI--NKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKE 681 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666655555555444444322 23444444444444444444444444444444433332222 222233
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHH
Q psy2823 93 KSQGEVYRLKAKLENTQGEMESMKEE 118 (122)
Q Consensus 93 ksQ~e~~rlq~elE~aQ~e~e~l~~E 118 (122)
.++..+..+...+..+..+.+.+..+
T Consensus 682 ~~~~~l~~l~~~l~~~~~e~~~~~~~ 707 (1201)
T PF12128_consen 682 QIEEQLNELEEELKQLKQELEELLEE 707 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555444444443
No 38
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=90.13 E-value=15 Score=33.76 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=16.4
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHH
Q psy2823 9 PGTLSRLLSERDKAVLEMDKSKEELERSQATLA 41 (122)
Q Consensus 9 Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~ 41 (122)
|+.++....|++.+...+..+..+.+..+..+.
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~ 174 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVE 174 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555544443333
No 39
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.95 E-value=8.7 Score=30.70 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhhH
Q psy2823 81 RSEEKTMQEKVEKSQGEVYRLKAKLENTQ 109 (122)
Q Consensus 81 q~e~~~lQ~elEksQ~e~~rlq~elE~aQ 109 (122)
..++.+|.+++..++.++.-+..+++..+
T Consensus 138 ~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 138 KEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555554444
No 40
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.81 E-value=6.7 Score=32.94 Aligned_cols=60 Identities=22% Similarity=0.320 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHH
Q psy2823 56 YDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESM 115 (122)
Q Consensus 56 ldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l 115 (122)
..+...++--++.+....|.+++....++..++.+....+.++.+++.+++.++.++..+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444433333
No 41
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.76 E-value=5.9 Score=31.64 Aligned_cols=20 Identities=5% Similarity=0.039 Sum_probs=9.1
Q ss_pred HHHHhHHHHHHHHHHHHHhH
Q psy2823 18 ERDKAVLEMDKSKEELERSQ 37 (122)
Q Consensus 18 E~eka~~e~ek~~eELErsQ 37 (122)
.+.+++.++..++.+|....
T Consensus 94 rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 42
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=89.64 E-value=16 Score=36.23 Aligned_cols=52 Identities=23% Similarity=0.382 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhH
Q psy2823 44 STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQ 95 (122)
Q Consensus 44 ~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ 95 (122)
.....++.+.+++..+..++..++.++...+..++....+.+.++.+++..+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~ 324 (1353)
T TIGR02680 273 SAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQ 324 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666666666666666666666666666655555555555555554444
No 43
>KOG0971|consensus
Probab=89.59 E-value=10 Score=37.49 Aligned_cols=64 Identities=27% Similarity=0.321 Sum_probs=45.4
Q ss_pred CchHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHH--h----------hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 8 PPGTLSRLLSERDKAVLEMDKSKEELERSQATLA--T----------LSTSAELDRLQEKYDKTCADLRRAQAELR 71 (122)
Q Consensus 8 ~Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~--~----------l~tq~EldrlQekldk~~~Elrr~Q~ele 71 (122)
.|-++.|-+-|...|+.=-++.+.||.-.+-+.. + .+.|.|+.-++|+.|-..++|+-+.+|.+
T Consensus 281 Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEme 356 (1243)
T KOG0971|consen 281 LQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEME 356 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666677777766665442 2 15788999999999999999998887743
No 44
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=89.47 E-value=1.8 Score=36.29 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHH
Q psy2823 49 LDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEE 118 (122)
Q Consensus 49 ldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~E 118 (122)
+..++..++.+...|...+.++......+...+.+.+....+....+.++...+.+++++..-+..|..|
T Consensus 223 l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E 292 (344)
T PF12777_consen 223 LEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE 292 (344)
T ss_dssp HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Confidence 3333333333333333333333333333333333333333333333344444444444444444444333
No 45
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=89.45 E-value=20 Score=35.04 Aligned_cols=59 Identities=17% Similarity=0.365 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 61 ADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY 119 (122)
Q Consensus 61 ~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El 119 (122)
..+..++............++.+...++.+.+++...+..+..++...+.....+..-|
T Consensus 476 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 476 KRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333333333444444444555555555555555555555555555554443
No 46
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=89.45 E-value=8.4 Score=30.24 Aligned_cols=68 Identities=16% Similarity=0.334 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
..++++..+.++...+++.+...... -+..+++.++.++++++..+.....++..+=..+..+...++
T Consensus 121 ~~l~KaK~~Y~~~c~~~e~~~~~~~~------~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~ 188 (236)
T cd07651 121 KYLEKAREKYEADCSKINSYTLQSQL------TWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWN 188 (236)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHcc------cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444322111 011355667788888888888888888777777777666554
No 47
>PHA02562 46 endonuclease subunit; Provisional
Probab=88.74 E-value=15 Score=31.70 Aligned_cols=104 Identities=10% Similarity=0.190 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy2823 10 GTLSRLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQE 89 (122)
Q Consensus 10 ~~~~rl~~E~eka~~e~ek~~eELErsQatl~~l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~ 89 (122)
..+..|...+..+..++..+...+...+. ...+...+..++......+......+......+..+++++..|..
T Consensus 299 ~~~~~l~d~i~~l~~~l~~l~~~i~~~~~------~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~ 372 (562)
T PHA02562 299 DRITKIKDKLKELQHSLEKLDTAIDELEE------IMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQA 372 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444433332221 112344444444444444444444444444444555555555555
Q ss_pred HHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 90 KVEKSQGEVYRLKAKLENTQGEMESMKEEY 119 (122)
Q Consensus 90 elEksQ~e~~rlq~elE~aQ~e~e~l~~El 119 (122)
.....-.++.++..+++....+...+..+.
T Consensus 373 ~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~ 402 (562)
T PHA02562 373 EFVDNAEELAKLQDELDKIVKTKSELVKEK 402 (562)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666666666666666655555443
No 48
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.55 E-value=11 Score=30.01 Aligned_cols=62 Identities=10% Similarity=0.272 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 44 STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKL 105 (122)
Q Consensus 44 ~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~el 105 (122)
.+|..+++..++-.....+++.+..+++.....+++....+...+.++...+..+..+..-.
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~ 100 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETR 100 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777777666666666655555555555555554444444333
No 49
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=88.52 E-value=18 Score=35.95 Aligned_cols=60 Identities=13% Similarity=0.216 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHH
Q psy2823 54 EKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEME 113 (122)
Q Consensus 54 ekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e 113 (122)
++++.....++.....+..........+.....+..+++.....++.....++.+..++.
T Consensus 333 ~eL~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~el~ 392 (1353)
T TIGR02680 333 EELERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLA 392 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444555555555555555555555544444444
No 50
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.45 E-value=12 Score=31.29 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHH
Q psy2823 14 RLLSERDKAVLEMDKSK 30 (122)
Q Consensus 14 rl~~E~eka~~e~ek~~ 30 (122)
.+..+.+.+..|.+...
T Consensus 13 ~l~~~~~~~~~E~~~Y~ 29 (314)
T PF04111_consen 13 QLDKQLEQAEKERDTYQ 29 (314)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344443333333
No 51
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.33 E-value=8.2 Score=28.32 Aligned_cols=42 Identities=12% Similarity=0.299 Sum_probs=19.7
Q ss_pred HHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHH
Q psy2823 75 ADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMK 116 (122)
Q Consensus 75 ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~ 116 (122)
..+..++.....+..++.....-+...++++.+.+.-+..+.
T Consensus 87 re~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~ 128 (151)
T PF11559_consen 87 RELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRK 128 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444555555555555555555544444444443
No 52
>PRK02224 chromosome segregation protein; Provisional
Probab=88.24 E-value=21 Score=32.83 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=6.9
Q ss_pred HHHHHHhhHHHHHHHHH
Q psy2823 101 LKAKLENTQGEMESMKE 117 (122)
Q Consensus 101 lq~elE~aQ~e~e~l~~ 117 (122)
+...++.++.+++.+..
T Consensus 410 ~e~~l~~l~~~~~~l~~ 426 (880)
T PRK02224 410 AEDFLEELREERDELRE 426 (880)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 53
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=88.17 E-value=16 Score=31.36 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHh-------h---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 11 TLSRLLSERDKAVLEMDKSKEELERSQATLAT-------L---------STSAELDRLQEKYDKTCADLRRAQAELRVVQ 74 (122)
Q Consensus 11 ~~~rl~~E~eka~~e~ek~~eELErsQatl~~-------l---------~tq~EldrlQekldk~~~Elrr~Q~ele~tQ 74 (122)
.+.-|+..+.-++.||.+|+.|.-+..+.-.+ | .+..++..+.+.|.+-.-+..+-|.+.....
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Ll 240 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLL 240 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888889999999887776643311 1 3556677777777776666666666666666
Q ss_pred HHHHHhhh
Q psy2823 75 ADNERVRS 82 (122)
Q Consensus 75 ~~~e~~q~ 82 (122)
+++-..+.
T Consensus 241 sqivdlQ~ 248 (306)
T PF04849_consen 241 SQIVDLQQ 248 (306)
T ss_pred HHHHHHHH
Confidence 55544333
No 54
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.92 E-value=11 Score=29.12 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHH
Q psy2823 81 RSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMK 116 (122)
Q Consensus 81 q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~ 116 (122)
..-++.+++++...+.++--+.+++.+.+.|-..|=
T Consensus 143 ~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 143 NKANEILQDELQALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455777777777777777777777776655543
No 55
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=87.92 E-value=4.9 Score=33.82 Aligned_cols=66 Identities=17% Similarity=0.158 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 12 LSRLLSERDKAVLEMDKSKEELERSQATLAT-LSTSAELDRLQEKYDKTCADLRRAQAELRVVQADN 77 (122)
Q Consensus 12 ~~rl~~E~eka~~e~ek~~eELErsQatl~~-l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~ 77 (122)
+....+.+.+|.++++..+.+++|.+.=+.. .-++.++|.++..++.+.+.+..+++.++..+..+
T Consensus 105 l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~l 171 (397)
T PRK15030 105 YDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINL 171 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555555555555555554422221 24566777777666666666666665555544333
No 56
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=87.70 E-value=12 Score=29.55 Aligned_cols=86 Identities=20% Similarity=0.342 Sum_probs=54.5
Q ss_pred HHHhHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--------HHHhhHHHHHHHH
Q psy2823 33 LERSQATLATL--STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQE--------KVEKSQGEVYRLK 102 (122)
Q Consensus 33 LErsQatl~~l--~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~--------elEksQ~e~~rlq 102 (122)
+|.+++.|..+ .-..|+.-+.+++-++....+.+...+..+..++-++...+.+|.. +.++.+..+..+.
T Consensus 52 ~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~ 131 (194)
T PF15619_consen 52 YEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLE 131 (194)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Confidence 34445555443 3346788888888888887777777777777777777766666655 3455566666666
Q ss_pred HHHHhhHHHHHHHHHH
Q psy2823 103 AKLENTQGEMESMKEE 118 (122)
Q Consensus 103 ~elE~aQ~e~e~l~~E 118 (122)
.+++..-..+..|...
T Consensus 132 ~~l~~~~~ki~~Lek~ 147 (194)
T PF15619_consen 132 QKLQEKEKKIQELEKQ 147 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666555555554443
No 57
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=87.66 E-value=14 Score=30.06 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy2823 45 TSAELDRLQEKYDKTCADLRRAQ 67 (122)
Q Consensus 45 tq~EldrlQekldk~~~Elrr~Q 67 (122)
+..++|..+-.++.+...+..++
T Consensus 143 s~~~~~~~~~~~~~a~~~~~~a~ 165 (331)
T PRK03598 143 SANDLENARSSRDQAQATLKSAQ 165 (331)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 58
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.43 E-value=4.7 Score=34.02 Aligned_cols=63 Identities=29% Similarity=0.444 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHH
Q psy2823 49 LDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGE 111 (122)
Q Consensus 49 ldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e 111 (122)
++-+|..-.-.--++.+.+++.+..|..+.+...++.+|-+++.+.-+++++|.++.+..-..
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 444444444455566666777777777777777788888888888888888888877665443
No 59
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=87.29 E-value=11 Score=33.77 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhHHHH
Q psy2823 10 GTLSRLLSERDKAVLEMDKSKEELERSQATL 40 (122)
Q Consensus 10 ~~~~rl~~E~eka~~e~ek~~eELErsQatl 40 (122)
....++..-+..+...+..+..|+++.+.++
T Consensus 310 k~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY 340 (569)
T PRK04778 310 KNSDTLPDFLEHAKEQNKELKEEIDRVKQSY 340 (569)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3445666667777777778888888877765
No 60
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.96 E-value=11 Score=28.29 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 50 DRLQEKYDKTCADLRRAQAELRV 72 (122)
Q Consensus 50 drlQekldk~~~Elrr~Q~ele~ 72 (122)
....++++........+..+...
T Consensus 126 ~~~~~~l~~l~~~~~~~~~e~~~ 148 (191)
T PF04156_consen 126 KSVEERLDSLDESIKELEKEIRE 148 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444333333333333333
No 61
>KOG0250|consensus
Probab=86.79 E-value=17 Score=35.90 Aligned_cols=71 Identities=21% Similarity=0.455 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHH
Q psy2823 46 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMK 116 (122)
Q Consensus 46 q~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~ 116 (122)
..+++....++.....++.+++..+.......+.+..++...+++++...+.+-.+..+.++-+.++..|+
T Consensus 393 ~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 393 GSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLK 463 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777777776666666666777777777777788888888888888888887777665
No 62
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=86.23 E-value=18 Score=29.92 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=10.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHH
Q psy2823 87 MQEKVEKSQGEVYRLKAKLENTQGEME 113 (122)
Q Consensus 87 lQ~elEksQ~e~~rlq~elE~aQ~e~e 113 (122)
+.++...+-.++.++..++++.+.++.
T Consensus 101 ak~r~~~le~el~~l~~~~~~l~~~i~ 127 (239)
T COG1579 101 AKERINSLEDELAELMEEIEKLEKEIE 127 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 63
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=86.23 E-value=8.4 Score=26.21 Aligned_cols=67 Identities=22% Similarity=0.275 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
..+++|..+..++.--+.-++.+.+.....+.. +.++.+....+..+|+.+...+++-+..+=..++
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~-------L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNE-------LKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 357778888888888887777666665555444 5666666667777777888888877777666554
No 64
>PRK03918 chromosome segregation protein; Provisional
Probab=85.72 E-value=28 Score=31.78 Aligned_cols=16 Identities=19% Similarity=0.300 Sum_probs=5.9
Q ss_pred HhHHHHHHHHHHHHHh
Q psy2823 21 KAVLEMDKSKEELERS 36 (122)
Q Consensus 21 ka~~e~ek~~eELErs 36 (122)
.+..++..+..+++..
T Consensus 204 ~l~~ei~~l~~e~~~l 219 (880)
T PRK03918 204 EVLREINEISSELPEL 219 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 65
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=85.57 E-value=27 Score=31.52 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=29.4
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHhhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy2823 17 SERDKAVLEMDKSKEELERSQATLATLST-------SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTM 87 (122)
Q Consensus 17 ~E~eka~~e~ek~~eELErsQatl~~l~t-------q~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~l 87 (122)
....++..++..+.+++......+..... ..++..+..+++++..++.....++.....+.+....++.++
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444432222 233444444444444444444444444444444433333333
No 66
>KOG3647|consensus
Probab=85.35 E-value=9.7 Score=32.90 Aligned_cols=63 Identities=19% Similarity=0.260 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHH
Q psy2823 55 KYDKTCADLRRAQAELRVVQADN-------ERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKE 117 (122)
Q Consensus 55 kldk~~~Elrr~Q~ele~tQ~~~-------e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ 117 (122)
.....+.+++.+...|.++.++. ++-..+++++++.|++.|+--=..=+++|.+..+++++=+
T Consensus 113 aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~ 182 (338)
T KOG3647|consen 113 AIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQ 182 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555554443 3444556666666666666555555666666666665543
No 67
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=84.89 E-value=19 Score=29.03 Aligned_cols=74 Identities=23% Similarity=0.395 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
..+++...+.++...+...++........+..-+..+++.++.++.++...+.....++.++=..+..++..|+
T Consensus 133 ~~l~kaKk~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~ 206 (258)
T cd07655 133 KKVEKAKKAYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYM 206 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34555555555555555555544444333333334566677777777777777777777777555555554443
No 68
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=84.71 E-value=22 Score=29.77 Aligned_cols=21 Identities=24% Similarity=0.115 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHhHHHHHHH
Q psy2823 9 PGTLSRLLSERDKAVLEMDKS 29 (122)
Q Consensus 9 Q~~~~rl~~E~eka~~e~ek~ 29 (122)
+..+.....|++.-..=+.++
T Consensus 15 ~~~~~~~~~E~~~Y~~fL~~l 35 (314)
T PF04111_consen 15 DKQLEQAEKERDTYQEFLKKL 35 (314)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444433333333
No 69
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=84.63 E-value=17 Score=28.35 Aligned_cols=82 Identities=16% Similarity=0.237 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHH-----HH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy2823 11 TLSRLLSERDKAVLEMDKSKEELERSQA-----TL-ATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEE 84 (122)
Q Consensus 11 ~~~rl~~E~eka~~e~ek~~eELErsQa-----tl-~~l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~ 84 (122)
.+..++.++..+..+++.++..++..=. .. .......++...+.++......+.+....++..+..++..+..+
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777776666433 11 11223345555555555555555555555555444444444444
Q ss_pred HHHHHHHH
Q psy2823 85 KTMQEKVE 92 (122)
Q Consensus 85 ~~lQ~elE 92 (122)
......+.
T Consensus 101 ~~~~~~l~ 108 (302)
T PF10186_consen 101 EQRRSRLS 108 (302)
T ss_pred HHHHHHHH
Confidence 44443333
No 70
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=84.41 E-value=21 Score=29.21 Aligned_cols=16 Identities=6% Similarity=0.009 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhHHHHH
Q psy2823 12 LSRLLSERDKAVLEMD 27 (122)
Q Consensus 12 ~~rl~~E~eka~~e~e 27 (122)
+..+.+++..+...++
T Consensus 88 l~~a~a~l~~a~a~l~ 103 (346)
T PRK10476 88 VAQAQADLALADAQIM 103 (346)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444443333
No 71
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=84.35 E-value=18 Score=28.29 Aligned_cols=7 Identities=29% Similarity=0.615 Sum_probs=2.7
Q ss_pred HHHHHHH
Q psy2823 12 LSRLLSE 18 (122)
Q Consensus 12 ~~rl~~E 18 (122)
|.-+.++
T Consensus 67 w~~i~~e 73 (251)
T cd07653 67 FRSILNE 73 (251)
T ss_pred HHHHHHH
Confidence 3333333
No 72
>PHA02562 46 endonuclease subunit; Provisional
Probab=84.05 E-value=27 Score=30.11 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHH
Q psy2823 48 ELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQG 110 (122)
Q Consensus 48 EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~ 110 (122)
.++.+++.++....+......++...+..+.....+..-+.+.+.+++..+..+..+++..+.
T Consensus 214 ~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~ 276 (562)
T PHA02562 214 NIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQK 276 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554554444433333333344444444444444433333
No 73
>KOG0933|consensus
Probab=84.01 E-value=49 Score=33.11 Aligned_cols=73 Identities=12% Similarity=0.282 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 48 ELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 48 EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
.++..-..+++..-+..+.+.|.+....+.....+++..+-+..+..-+++..+.+++.+++.+....+.++.
T Consensus 802 ~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~ 874 (1174)
T KOG0933|consen 802 RAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELK 874 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Confidence 3444444455555566666666666666777777777777777777778888888888888888777777663
No 74
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=83.40 E-value=33 Score=30.67 Aligned_cols=51 Identities=20% Similarity=0.147 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 70 LRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 70 le~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
|..++.++-.+...++.=++++....++..-=+.++.....|..++...|+
T Consensus 166 l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~ 216 (420)
T COG4942 166 LKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLN 216 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455554555555555555555555555555555555555555555443
No 75
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=83.29 E-value=23 Score=28.74 Aligned_cols=114 Identities=21% Similarity=0.294 Sum_probs=62.9
Q ss_pred CCchHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhh-------------------hhhHHHHHHHHHHHHHHHHHHHHH
Q psy2823 7 PPPGTLSRLLSERDKAVLEMDKSKEELERSQATLATL-------------------STSAELDRLQEKYDKTCADLRRAQ 67 (122)
Q Consensus 7 ~~Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~~l-------------------~tq~EldrlQekldk~~~Elrr~Q 67 (122)
.+|++|..=-+|.-.+.+.+--++..+..+...+..+ ...++.+-+.+++.+...++..++
T Consensus 21 e~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr 100 (202)
T PF06818_consen 21 ESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELR 100 (202)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHH
Confidence 3566666666666666666666666666665555322 122455556667777777777777
Q ss_pred HHHHHH-----------HHHHHHh-----hhHHHHHHHHHHhhHHHHHHHHHHHH----hhHHHHHHHHHHHh
Q psy2823 68 AELRVV-----------QADNERV-----RSEEKTMQEKVEKSQGEVYRLKAKLE----NTQGEMESMKEEYE 120 (122)
Q Consensus 68 ~ele~t-----------Q~~~e~~-----q~e~~~lQ~elEksQ~e~~rlq~elE----~aQ~e~e~l~~ElE 120 (122)
..+... ..+-.++ .+....|..++|....++.......+ +|..|.-.-++|-|
T Consensus 101 ~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKe 173 (202)
T PF06818_consen 101 EELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKE 173 (202)
T ss_pred HHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 666554 1121222 12345566666666666665555554 44444444444443
No 76
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=83.13 E-value=11 Score=31.32 Aligned_cols=63 Identities=14% Similarity=0.043 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 12 LSRLLSERDKAVLEMDKSKEELERSQATLAT-LSTSAELDRLQEKYDKTCADLRRAQAELRVVQ 74 (122)
Q Consensus 12 ~~rl~~E~eka~~e~ek~~eELErsQatl~~-l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ 74 (122)
+....+.+.+|+..+...+.+++|.+.=+.. .-++.++|..+..++.+.+.+..+++.+...+
T Consensus 103 ~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~~a~a~~~~a~a~l~~a~ 166 (385)
T PRK09578 103 RDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADERQAKAAVASAKAELARAQ 166 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555556665543321 23556666666555555555555554444433
No 77
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=83.02 E-value=36 Score=30.80 Aligned_cols=11 Identities=27% Similarity=0.444 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q psy2823 47 AELDRLQEKYD 57 (122)
Q Consensus 47 ~EldrlQekld 57 (122)
.+++.+..++.
T Consensus 405 ~el~~l~~~l~ 415 (650)
T TIGR03185 405 EELAEVDKKIS 415 (650)
T ss_pred HHHHHHHHHHh
Confidence 34444444443
No 78
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=82.44 E-value=12 Score=25.12 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHH
Q psy2823 49 LDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLE 106 (122)
Q Consensus 49 ldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE 106 (122)
+--||+++|.+...+...+.++-....+++.+-+.+.-.-.+..+...++..|+++++
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444445544444443333444444444444444443
No 79
>KOG0978|consensus
Probab=82.41 E-value=46 Score=31.61 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=17.7
Q ss_pred HHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 78 ERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 78 e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
+++.+.+++++..+-.+-.++.-+.-++.+++++.+.++..|+
T Consensus 576 ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle 618 (698)
T KOG0978|consen 576 EKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLE 618 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444444444444444444443
No 80
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=82.24 E-value=23 Score=28.09 Aligned_cols=64 Identities=17% Similarity=0.288 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 56 YDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY 119 (122)
Q Consensus 56 ldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El 119 (122)
-+.....++.+...+..+-.-.+.+-.....|+..++....++...+.++.+++.+++.+=.+|
T Consensus 171 e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444433444444445555666666666666666666666666666554443
No 81
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=82.21 E-value=15 Score=30.95 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=9.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhH
Q psy2823 87 MQEKVEKSQGEVYRLKAKLENTQ 109 (122)
Q Consensus 87 lQ~elEksQ~e~~rlq~elE~aQ 109 (122)
.+..+..++..+...+..++.++
T Consensus 146 a~~~~~~a~a~~~~a~a~l~~a~ 168 (397)
T PRK15030 146 ALADAQQANAAVTAAKAAVETAR 168 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443
No 82
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=82.20 E-value=30 Score=29.34 Aligned_cols=94 Identities=26% Similarity=0.372 Sum_probs=62.1
Q ss_pred HHHHHHHHHhH--HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHH
Q psy2823 27 DKSKEELERSQ--ATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAK 104 (122)
Q Consensus 27 ek~~eELErsQ--atl~~l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~e 104 (122)
+=.+.||.++= |-|.+|+-=.++--+-+.+.-.-.-|.-.+++-+..-.+++..+++.+..+++++..-.+..+|-.+
T Consensus 106 elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~ 185 (290)
T COG4026 106 ELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEM 185 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555543 2233343223333444444445555555666666666677777777777999999999999999999
Q ss_pred HHhhHHHHHHHHHHHh
Q psy2823 105 LENTQGEMESMKEEYE 120 (122)
Q Consensus 105 lE~aQ~e~e~l~~ElE 120 (122)
+.+.-++...|+..++
T Consensus 186 ~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 186 LKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHhchhHHHHHHHHHH
Confidence 9999989888888765
No 83
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=82.19 E-value=19 Score=27.03 Aligned_cols=10 Identities=20% Similarity=0.328 Sum_probs=3.6
Q ss_pred hHHHHHHHHH
Q psy2823 108 TQGEMESMKE 117 (122)
Q Consensus 108 aQ~e~e~l~~ 117 (122)
+...++.+..
T Consensus 127 ~E~k~eel~~ 136 (143)
T PF12718_consen 127 WEEKYEELEE 136 (143)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 84
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=82.11 E-value=13 Score=31.70 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 10 GTLSRLLSERDKAVLEMDKSKEELERSQATLAT-LSTSAELDRLQEKYDKTCADLRRAQAELRV 72 (122)
Q Consensus 10 ~~~~rl~~E~eka~~e~ek~~eELErsQatl~~-l~tq~EldrlQekldk~~~Elrr~Q~ele~ 72 (122)
..+.+..+.+.++.+.++..+.+++|.+.-+.. .-++.++|..+..+..+.+.+..+++.++.
T Consensus 125 ~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~~a~a~l~~a~a~l~~ 188 (415)
T PRK11556 125 VALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVSETEGTIKADEASVAS 188 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666666665543322 245556666555555555555444444433
No 85
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=81.85 E-value=49 Score=31.59 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhHHHH
Q psy2823 10 GTLSRLLSERDKAVLEMDKSKEELERSQATL 40 (122)
Q Consensus 10 ~~~~rl~~E~eka~~e~ek~~eELErsQatl 40 (122)
..+..+.++.+++...+.+....++.++..|
T Consensus 596 eelE~le~eK~~Le~~L~~~~d~lE~~~~qL 626 (769)
T PF05911_consen 596 EELEKLESEKEELEMELASCQDQLESLKNQL 626 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555554444444444444444
No 86
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=81.82 E-value=18 Score=26.41 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=42.5
Q ss_pred CCCCchHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHh--------h----hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 5 LVPPPGTLSRLLSERDKAVLEMDKSKEELERSQATLAT--------L----STSAELDRLQEKYDKTCADLRRAQAELRV 72 (122)
Q Consensus 5 ~~~~Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~~--------l----~tq~EldrlQekldk~~~Elrr~Q~ele~ 72 (122)
+.+.++.+.++....+.+......++.+++.-...... + .+-..|..+-+.+.....++..+..++..
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~ 84 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAES 84 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777776654433311 1 12235555555555555555555555555
Q ss_pred HHHHHHHhh
Q psy2823 73 VQADNERVR 81 (122)
Q Consensus 73 tQ~~~e~~q 81 (122)
....++...
T Consensus 85 a~~~l~~~e 93 (132)
T PF07926_consen 85 AKAELEESE 93 (132)
T ss_pred HHHHHHHHH
Confidence 555554433
No 87
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=81.53 E-value=26 Score=28.14 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=7.4
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q psy2823 14 RLLSERDKAVLEMDKSKEE 32 (122)
Q Consensus 14 rl~~E~eka~~e~ek~~eE 32 (122)
.|..+..++..++..++.-
T Consensus 22 ~LE~~N~~Le~~i~~~~~~ 40 (312)
T PF00038_consen 22 FLEQENKRLESEIEELREK 40 (312)
T ss_dssp HHHHHHHHHHHHHHH----
T ss_pred HHHHHhhhhHHHHHHHHhc
Confidence 3444555555555544443
No 88
>KOG0243|consensus
Probab=81.35 E-value=60 Score=32.25 Aligned_cols=101 Identities=25% Similarity=0.386 Sum_probs=63.0
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHhh------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhh
Q psy2823 18 ERDKAVLEMDKSKEELERSQATLATL------------STSAELDRLQEKYDKTCADLRRAQAELRVVQADN---ERVRS 82 (122)
Q Consensus 18 E~eka~~e~ek~~eELErsQatl~~l------------~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~---e~~q~ 82 (122)
|+......++++..+++.....|..+ ....++++++++|++...++..++.++..++..+ +.+-+
T Consensus 442 e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~ 521 (1041)
T KOG0243|consen 442 EKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIIS 521 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555444221 2346889999999999999999998888887774 22223
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy2823 83 EEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYER 121 (122)
Q Consensus 83 e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE~ 121 (122)
....+-. ++....-.++..++.++..+..+...+++
T Consensus 522 ~~~~se~---~l~~~a~~l~~~~~~s~~d~s~l~~kld~ 557 (1041)
T KOG0243|consen 522 QQEKSEE---KLVDRATKLRRSLEESQDDLSSLFEKLDR 557 (1041)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3222222 22333566777788888888777776654
No 89
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=81.14 E-value=40 Score=30.12 Aligned_cols=72 Identities=10% Similarity=0.193 Sum_probs=42.9
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHH
Q psy2823 18 ERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGE 97 (122)
Q Consensus 18 E~eka~~e~ek~~eELErsQatl~~l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e 97 (122)
.+++...+++++...+..++ .+..+++..+.....++.+.-.++..++.++.++.-.+..+-..+.+++.+
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~---------~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQ---------DQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 45555555555555555555 455555666666666666666666666666666666666566666555544
Q ss_pred H
Q psy2823 98 V 98 (122)
Q Consensus 98 ~ 98 (122)
-
T Consensus 110 ~ 110 (420)
T COG4942 110 E 110 (420)
T ss_pred H
Confidence 3
No 90
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=81.11 E-value=23 Score=29.71 Aligned_cols=51 Identities=29% Similarity=0.458 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhH-------HHHHHHHHHH
Q psy2823 69 ELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ-------GEMESMKEEY 119 (122)
Q Consensus 69 ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ-------~e~e~l~~El 119 (122)
++..++..++++.++-..|-.|+++-..++.|.++.|...| .|.+++..||
T Consensus 177 ~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL 234 (267)
T PF10234_consen 177 QLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEEL 234 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 33344444444444444455555555555555555555555 4555555544
No 91
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=80.92 E-value=54 Score=31.41 Aligned_cols=66 Identities=26% Similarity=0.298 Sum_probs=35.7
Q ss_pred chHHHHHHHHHHHhHHHHHHHH----HHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 9 PGTLSRLLSERDKAVLEMDKSK----EELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNER 79 (122)
Q Consensus 9 Q~~~~rl~~E~eka~~e~ek~~----eELErsQatl~~l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~ 79 (122)
+.++.+|+.||+++.+++.-.- .++.++.-. -..|++++.+........|...+..+..+..++..
T Consensus 477 ~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEq-----geaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~ 546 (739)
T PF07111_consen 477 SLELQQLREERDRLDAELQLSARLIQQEVGRAREQ-----GEAERQQLSEVAQQLEQELQEKQESLAELEEQLEA 546 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777765432 333333322 23566666666555555555555444444444433
No 92
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=80.80 E-value=28 Score=28.12 Aligned_cols=53 Identities=17% Similarity=0.355 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHH
Q psy2823 64 RRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMK 116 (122)
Q Consensus 64 rr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~ 116 (122)
.++|+++...+.+...+-..-...+.+.-.+.++-..++..|...|..+..|+
T Consensus 129 ~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 129 NRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333433333333333333333333333333444444444444333
No 93
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=80.69 E-value=15 Score=30.68 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 12 LSRLLSERDKAVLEMDKSKEELERSQATLAT-LSTSAELDRLQEKYDKTCADLRRAQAELRVVQA 75 (122)
Q Consensus 12 ~~rl~~E~eka~~e~ek~~eELErsQatl~~-l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~ 75 (122)
+....+.++.|.+.+...+.+++|.+.=+.. .-++.++|+.+..++.+.+.+..+++.+...+.
T Consensus 101 l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~ 165 (385)
T PRK09859 101 LNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATI 165 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444455554432211 235566666666666666655555555544433
No 94
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=80.37 E-value=27 Score=29.32 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 55 KYDKTCADLRRAQAELRVVQADN-------ERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY 119 (122)
Q Consensus 55 kldk~~~Elrr~Q~ele~tQ~~~-------e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El 119 (122)
.......++..++..+.+..++. ++-..+++|.++.|...|+-==-.-+++|+...|+..+=+.|
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y 241 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIY 241 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555554 333444455555555555433334467777777766665443
No 95
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=80.31 E-value=20 Score=26.11 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=12.3
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHHH
Q psy2823 17 SERDKAVLEMDKSKEELERSQATL 40 (122)
Q Consensus 17 ~E~eka~~e~ek~~eELErsQatl 40 (122)
++...+..++..+....+...+.+
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~ 26 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQL 26 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555433
No 96
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=79.61 E-value=0.58 Score=44.01 Aligned_cols=39 Identities=26% Similarity=0.280 Sum_probs=0.0
Q ss_pred cCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHh
Q psy2823 4 CLVPPPGTLSRLLSERDKAVLEMDKSKEELERSQATLAT 42 (122)
Q Consensus 4 ~~~~~Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~~ 42 (122)
.+......+..|..-+-++.++++-+..+|++.++....
T Consensus 336 ~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~ 374 (859)
T PF01576_consen 336 QLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAE 374 (859)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666667777777777777777765543
No 97
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.20 E-value=23 Score=26.20 Aligned_cols=100 Identities=20% Similarity=0.252 Sum_probs=56.4
Q ss_pred CCCCchHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy2823 5 LVPPPGTLSRLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEE 84 (122)
Q Consensus 5 ~~~~Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~~l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~ 84 (122)
..|+-.-|.+|.+.+....+|+..++.++.+..++-..+ ..|+=++-...|... ..-.+....+.++
T Consensus 11 ~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l--~~Eiv~l~~~~e~~~-----------~~~~~~~~L~~el 77 (120)
T PF12325_consen 11 GGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDEL--REEIVKLMEENEELR-----------ALKKEVEELEQEL 77 (120)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 345666788899999888888888887777776443322 244444433333321 1223334455566
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHH
Q psy2823 85 KTMQEKVEKSQGEVYRLKAKLENTQGEMESMKE 117 (122)
Q Consensus 85 ~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ 117 (122)
..++.+++.+=.-+=.--.+.+..+.++.-++.
T Consensus 78 ~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 78 EELQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 667777666654333333444444455554444
No 98
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=79.00 E-value=20 Score=29.42 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2823 47 AELDRLQEKYDKTCADL 63 (122)
Q Consensus 47 ~EldrlQekldk~~~El 63 (122)
.++|+.+..++.+.+.+
T Consensus 122 ~~~d~a~~~~~~a~a~l 138 (310)
T PRK10559 122 EEIDQANNVLQTVLHQL 138 (310)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33443333333333333
No 99
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=78.74 E-value=35 Score=31.01 Aligned_cols=30 Identities=27% Similarity=0.179 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHHH
Q psy2823 11 TLSRLLSERDKAVLEMDKSKEELERSQATL 40 (122)
Q Consensus 11 ~~~rl~~E~eka~~e~ek~~eELErsQatl 40 (122)
.+..++.+...+..+|++++.|-+|.+...
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456778888888888888888888776444
No 100
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=78.72 E-value=42 Score=30.44 Aligned_cols=7 Identities=29% Similarity=0.596 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy2823 14 RLLSERD 20 (122)
Q Consensus 14 rl~~E~e 20 (122)
.|..+.+
T Consensus 185 ~l~~~~d 191 (489)
T PF05262_consen 185 ELREDKD 191 (489)
T ss_pred HHhhccc
Confidence 3333333
No 101
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=78.46 E-value=40 Score=28.49 Aligned_cols=60 Identities=13% Similarity=0.218 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 60 CADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY 119 (122)
Q Consensus 60 ~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El 119 (122)
..+|.+++.++..+-.++...+..+..++.++..+-..+.....+.....+++..+..-+
T Consensus 203 ~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 203 PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557777777777777777776666666777776666666666666666666665555443
No 102
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=78.40 E-value=32 Score=27.35 Aligned_cols=62 Identities=16% Similarity=0.266 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHH
Q psy2823 50 DRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGE 111 (122)
Q Consensus 50 drlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e 111 (122)
.+.|++.++...+-+.+..+.+....+.+.....+.++...+...+.++..|+.+++....-
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666777666666666666666666666666666666666555533
No 103
>KOG4674|consensus
Probab=78.33 E-value=87 Score=32.95 Aligned_cols=93 Identities=25% Similarity=0.256 Sum_probs=51.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-----HHHHHhhhHHHH
Q psy2823 15 LLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQA---ELRVVQ-----ADNERVRSEEKT 86 (122)
Q Consensus 15 l~~E~eka~~e~ek~~eELErsQatl~~l~tq~EldrlQekldk~~~Elrr~Q~---ele~tQ-----~~~e~~q~e~~~ 86 (122)
+-..+..+...++++..++..-|..+.+++ .+++-..-.+.+...+.-+|.. ++...+ .++.+..+++.+
T Consensus 1241 ~~~k~qEl~~~i~kl~~el~plq~~l~el~--~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~ 1318 (1822)
T KOG4674|consen 1241 NLEKIQELRDKIEKLNFELAPLQNELKELK--AELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISR 1318 (1822)
T ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 333444444444555555554444443333 4555555566666666666653 233332 334556666677
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhH
Q psy2823 87 MQEKVEKSQGEVYRLKAKLENTQ 109 (122)
Q Consensus 87 lQ~elEksQ~e~~rlq~elE~aQ 109 (122)
|-++++..+..+.-+..++..+|
T Consensus 1319 Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1319 LKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766666666666666
No 104
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=78.32 E-value=33 Score=27.45 Aligned_cols=10 Identities=20% Similarity=0.106 Sum_probs=3.6
Q ss_pred HHhHHHHHHH
Q psy2823 20 DKAVLEMDKS 29 (122)
Q Consensus 20 eka~~e~ek~ 29 (122)
+.++..+..+
T Consensus 83 ~~a~a~l~~~ 92 (334)
T TIGR00998 83 AKAEANLAAL 92 (334)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 105
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.20 E-value=25 Score=26.03 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q psy2823 45 TSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKS 94 (122)
Q Consensus 45 tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEks 94 (122)
+-+-+.+++..+-...+|+.-++.++.+.....+.+..++-++-.+.+..
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466677777777777777777777777777777666665555555444
No 106
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=77.52 E-value=32 Score=26.84 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=12.1
Q ss_pred chHHHHHHHHHHHhHHHHHHHHH
Q psy2823 9 PGTLSRLLSERDKAVLEMDKSKE 31 (122)
Q Consensus 9 Q~~~~rl~~E~eka~~e~ek~~e 31 (122)
+..+.++..+++.+....+.+=+
T Consensus 26 ~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 26 RSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554433
No 107
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=77.25 E-value=29 Score=28.92 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=5.1
Q ss_pred HHHHHhhHHHHHHH
Q psy2823 102 KAKLENTQGEMESM 115 (122)
Q Consensus 102 q~elE~aQ~e~e~l 115 (122)
+..++.++..+...
T Consensus 152 ~a~~~~a~a~l~~a 165 (385)
T PRK09578 152 KAAVASAKAELARA 165 (385)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 108
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=76.26 E-value=38 Score=27.08 Aligned_cols=40 Identities=15% Similarity=0.276 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy2823 82 SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYER 121 (122)
Q Consensus 82 ~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE~ 121 (122)
-++..+..++.++...+.+...++.++=..++.+..+++.
T Consensus 171 k~~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~~~~~~~~ 210 (239)
T cd07658 171 KEDEKLEAKRKKGEESRLKAENEYYTCCVRLERLRLEWES 210 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777888888877777777777777777766653
No 109
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=76.03 E-value=33 Score=29.34 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q psy2823 95 QGEVYRLKAKLENTQGEMESMKEE 118 (122)
Q Consensus 95 Q~e~~rlq~elE~aQ~e~e~l~~E 118 (122)
+..+..++..++.++..++..+..
T Consensus 169 ~~~~~~a~a~l~~a~a~l~~a~~~ 192 (415)
T PRK11556 169 QALVSETEGTIKADEASVASAQLQ 192 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444444444444333
No 110
>KOG0161|consensus
Probab=75.67 E-value=78 Score=33.41 Aligned_cols=68 Identities=26% Similarity=0.404 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHH
Q psy2823 45 TSAELDRLQEKYDKTC-------ADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEM 112 (122)
Q Consensus 45 tq~EldrlQekldk~~-------~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~ 112 (122)
+..+++-+-+.+...- +.=+++-+++-..+++++...+++....++.-+++..+.++..++.+-|+..
T Consensus 1693 aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~ 1767 (1930)
T KOG0161|consen 1693 AELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETS 1767 (1930)
T ss_pred hHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4445555555554422 2334455556666666666666666677777777777777777766666543
No 111
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=75.37 E-value=41 Score=27.00 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=40.7
Q ss_pred HhHHHHHHHHHHHHHhHHHHHh----h--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q psy2823 21 KAVLEMDKSKEELERSQATLAT----L--STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKS 94 (122)
Q Consensus 21 ka~~e~ek~~eELErsQatl~~----l--~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEks 94 (122)
.++.+|.+|..++.......+. + .-..++..+...+|.+..+-.++..++.+...+++..+..++.........
T Consensus 22 ~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~l 101 (312)
T PF00038_consen 22 FLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDL 101 (312)
T ss_dssp HHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777666655311 1 234566666666666666666666555555555544444333333333333
Q ss_pred HHHHHHHHHHH
Q psy2823 95 QGEVYRLKAKL 105 (122)
Q Consensus 95 Q~e~~rlq~el 105 (122)
..++..+++.+
T Consensus 102 e~el~~lrk~l 112 (312)
T PF00038_consen 102 EEELESLRKDL 112 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhhhhhhh
Confidence 33344333333
No 112
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=75.13 E-value=44 Score=27.32 Aligned_cols=22 Identities=9% Similarity=0.080 Sum_probs=11.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHhH
Q psy2823 16 LSERDKAVLEMDKSKEELERSQ 37 (122)
Q Consensus 16 ~~E~eka~~e~ek~~eELErsQ 37 (122)
...++.+++++...+..+++.+
T Consensus 85 ~~~l~~a~a~l~~a~a~l~~~~ 106 (346)
T PRK10476 85 ELTVAQAQADLALADAQIMTTQ 106 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544
No 113
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=74.60 E-value=34 Score=25.68 Aligned_cols=27 Identities=15% Similarity=0.311 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHH
Q psy2823 80 VRSEEKTMQEKVEKSQGEVYRLKAKLE 106 (122)
Q Consensus 80 ~q~e~~~lQ~elEksQ~e~~rlq~elE 106 (122)
...-+..|-++|+.+..-+..+..+|.
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555444444444444
No 114
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=74.46 E-value=41 Score=26.60 Aligned_cols=72 Identities=13% Similarity=0.295 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
..++++....++...++..++...+..-. .-+..+++.++.++.++...+.....++.++=..++.+...++
T Consensus 120 ~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~--~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~ 191 (239)
T cd07647 120 KKTMKAKKSYEQKCREKDKAEQAYEKSSS--GAQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWE 191 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544432222111 1223466678888888888888888877777777776665554
No 115
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=74.29 E-value=48 Score=27.37 Aligned_cols=22 Identities=5% Similarity=0.004 Sum_probs=8.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH
Q psy2823 84 EKTMQEKVEKSQGEVYRLKAKL 105 (122)
Q Consensus 84 ~~~lQ~elEksQ~e~~rlq~el 105 (122)
++.++..+..-...+...+.++
T Consensus 164 ~eK~k~~~~~~~q~~e~aKn~Y 185 (252)
T cd07675 164 VEKAKQQLNLRTHMADESKNEY 185 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344443333333333333
No 116
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=73.88 E-value=37 Score=25.84 Aligned_cols=61 Identities=23% Similarity=0.350 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRV-VQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLEN 107 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~-tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~ 107 (122)
.++-+++++++....+..-+....+. .-.+.++...+.+.+.+++++.+.++..+++..++
T Consensus 125 ~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 125 KELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555444443333222211 11222333334444444554444444444443333
No 117
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=73.49 E-value=29 Score=24.49 Aligned_cols=72 Identities=18% Similarity=0.275 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 49 LDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 49 ldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
|++|-.|...+.-.+.=+|++++..-..+.....++..+..-.+....+.++|+.+..+||+-+..|=+.++
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566666777777677777777776666666655555555555666777777888888888877776655554
No 118
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=73.46 E-value=36 Score=25.89 Aligned_cols=32 Identities=25% Similarity=0.469 Sum_probs=12.4
Q ss_pred HHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 88 QEKVEKSQGEVYRLKAKLENTQGEMESMKEEY 119 (122)
Q Consensus 88 Q~elEksQ~e~~rlq~elE~aQ~e~e~l~~El 119 (122)
.+++++...++.....+++....+.+.+..||
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333333333333333333334444444443
No 119
>KOG0980|consensus
Probab=73.41 E-value=99 Score=30.56 Aligned_cols=9 Identities=22% Similarity=0.553 Sum_probs=3.3
Q ss_pred HHHHHHhhH
Q psy2823 87 MQEKVEKSQ 95 (122)
Q Consensus 87 lQ~elEksQ 95 (122)
|-+.+|..+
T Consensus 471 L~d~le~~~ 479 (980)
T KOG0980|consen 471 LNDQLEELQ 479 (980)
T ss_pred HHHHHHHHH
Confidence 333333333
No 120
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=73.28 E-value=87 Score=29.83 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHH
Q psy2823 70 LRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKA 103 (122)
Q Consensus 70 le~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~ 103 (122)
|...|.++|-..-++.+|.++.+-..+++.-+-.
T Consensus 116 Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~r 149 (717)
T PF09730_consen 116 LKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAAR 149 (717)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667777777777777777766655554433
No 121
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=73.05 E-value=24 Score=23.25 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=7.2
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q psy2823 16 LSERDKAVLEMDKSKEELE 34 (122)
Q Consensus 16 ~~E~eka~~e~ek~~eELE 34 (122)
..++..+...+..+...+.
T Consensus 11 ~~~~~~~~~~l~~L~~~~~ 29 (123)
T PF02050_consen 11 QQELQEAEEQLEQLQQERQ 29 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 122
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=72.63 E-value=41 Score=29.06 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy2823 45 TSAELDRLQEKYDKTCADLRRAQ 67 (122)
Q Consensus 45 tq~EldrlQekldk~~~Elrr~Q 67 (122)
+.+++|+.+..++++.+.+-.++
T Consensus 149 s~~~~~~a~~a~~~A~A~~~~a~ 171 (352)
T COG1566 149 SREELDRARAALQAAEAALAAAQ 171 (352)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhH
Confidence 44555555555555555554444
No 123
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=72.60 E-value=59 Score=27.56 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 45 TSAELDRLQEKYDKTCADLRRAQAELRVVQ 74 (122)
Q Consensus 45 tq~EldrlQekldk~~~Elrr~Q~ele~tQ 74 (122)
++.++|..+-.++.+.+.+..++..+...+
T Consensus 156 S~~~ld~a~~~~~~a~a~l~~a~~~l~~~~ 185 (390)
T PRK15136 156 GREELQHARDAVASAQAQLDVAIQQYNANQ 185 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566555555555555555555544433
No 124
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=72.55 E-value=46 Score=27.30 Aligned_cols=9 Identities=22% Similarity=0.309 Sum_probs=3.2
Q ss_pred HHHhhHHHH
Q psy2823 104 KLENTQGEM 112 (122)
Q Consensus 104 elE~aQ~e~ 112 (122)
.++.++..+
T Consensus 137 ~l~~a~a~l 145 (310)
T PRK10559 137 QLAKAQATR 145 (310)
T ss_pred HHHHHHHHH
Confidence 333333333
No 125
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=71.63 E-value=27 Score=23.24 Aligned_cols=12 Identities=42% Similarity=0.639 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHh
Q psy2823 96 GEVYRLKAKLEN 107 (122)
Q Consensus 96 ~e~~rlq~elE~ 107 (122)
.+|.+|..+++.
T Consensus 46 ~ei~~L~~e~ee 57 (61)
T PF08826_consen 46 QEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 126
>KOG0977|consensus
Probab=71.30 E-value=87 Score=28.98 Aligned_cols=18 Identities=44% Similarity=0.612 Sum_probs=7.2
Q ss_pred HHHHHhHHHHHHHHHHHH
Q psy2823 17 SERDKAVLEMDKSKEELE 34 (122)
Q Consensus 17 ~E~eka~~e~ek~~eELE 34 (122)
.++.+++-+..++++|+.
T Consensus 106 ~~ra~~e~ei~kl~~e~~ 123 (546)
T KOG0977|consen 106 RERAKLEIEITKLREELK 123 (546)
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 333344444444443333
No 127
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=71.25 E-value=57 Score=30.04 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy2823 48 ELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEK 90 (122)
Q Consensus 48 EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~e 90 (122)
-+..+|+-+-.++-+|+-...+-+-.|.++.++.+..-+||++
T Consensus 391 ~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEr 433 (527)
T PF15066_consen 391 TLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQER 433 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHH
Confidence 4455555555555555555555555555555444444444443
No 128
>KOG0161|consensus
Probab=71.16 E-value=1.5e+02 Score=31.54 Aligned_cols=11 Identities=18% Similarity=0.305 Sum_probs=4.1
Q ss_pred HHHHHHhHHHH
Q psy2823 16 LSERDKAVLEM 26 (122)
Q Consensus 16 ~~E~eka~~e~ 26 (122)
..|.+.+..++
T Consensus 1413 ~~el~d~~~d~ 1423 (1930)
T KOG0161|consen 1413 QQELEDLQLDL 1423 (1930)
T ss_pred HhHHHHHHHHH
Confidence 33333333333
No 129
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=71.12 E-value=52 Score=27.48 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhH
Q psy2823 83 EEKTMQEKVEKSQGEVYRLKAKLENTQ 109 (122)
Q Consensus 83 e~~~lQ~elEksQ~e~~rlq~elE~aQ 109 (122)
+++..+..+..++..+...+..++.++
T Consensus 138 ~~d~a~~~~~~a~a~~~~a~a~l~~a~ 164 (385)
T PRK09859 138 DYDTARTQLNEAEANVTVAKAAVEQAT 164 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443
No 130
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=70.98 E-value=69 Score=27.69 Aligned_cols=92 Identities=23% Similarity=0.339 Sum_probs=46.4
Q ss_pred HHHHHHHhHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHH
Q psy2823 29 SKEELERSQATLATL-----STSAELDRLQEKYDKTCADLRRAQ----AELRVVQADNERVRSEEKTMQEKVEKSQGEVY 99 (122)
Q Consensus 29 ~~eELErsQatl~~l-----~tq~EldrlQekldk~~~Elrr~Q----~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~ 99 (122)
-|..|++.+.....+ .+...|++++..+.++.--+..-. ..++-.-.+.-.++..+...++++..+.+-+.
T Consensus 218 WR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~ 297 (359)
T PF10498_consen 218 WRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVS 297 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 345555555444322 244555555555555443333222 11222223333444455556666666666666
Q ss_pred HHHHHHHhhHHHHHHHHHHHh
Q psy2823 100 RLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 100 rlq~elE~aQ~e~e~l~~ElE 120 (122)
.+-.+|-..-.++++++.+++
T Consensus 298 ~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 298 ERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666665
No 131
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=70.92 E-value=49 Score=25.94 Aligned_cols=68 Identities=13% Similarity=0.270 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 10 GTLSRLLSERDKAVLEMDKSKEELERSQATLATLS------TSAELDRLQEKYDKTCADLRRAQAELRVVQADN 77 (122)
Q Consensus 10 ~~~~rl~~E~eka~~e~ek~~eELErsQatl~~l~------tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~ 77 (122)
+.+.+++.........+++.+..++..=..+..+. +..++++++.+++|+..++..+..+....=..+
T Consensus 107 ~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~ 180 (236)
T cd07651 107 SHMEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKAL 180 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554443332221 225777777777777777777776654443333
No 132
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=70.52 E-value=46 Score=25.49 Aligned_cols=58 Identities=16% Similarity=0.295 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 12 LSRLLSERDKAVLEMDKSKEELERSQATLAT-LSTSAELDRLQEKYDKTCADLRRAQAE 69 (122)
Q Consensus 12 ~~rl~~E~eka~~e~ek~~eELErsQatl~~-l~tq~EldrlQekldk~~~Elrr~Q~e 69 (122)
+....+++..++..++..+.+++|.+.-+.. ..+..+++.....+..+.+.+..++..
T Consensus 18 ~~~~~a~l~~a~~~l~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 76 (265)
T TIGR00999 18 LAKMAAELKVAQKRVELARKTYEREKKLFEQGVIPRQEFESAEYALEEAQAEVQAAKSE 76 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555554432211 234455555554444444444444433
No 133
>KOG2264|consensus
Probab=70.50 E-value=24 Score=33.63 Aligned_cols=57 Identities=18% Similarity=0.356 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHH
Q psy2823 61 ADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKE 117 (122)
Q Consensus 61 ~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ 117 (122)
.||+.+++.....+++.++...-.+.++..+...|.++.+|+...+.+|...+.+.+
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 345555555555666666666666667888888888888888888888877766543
No 134
>KOG0999|consensus
Probab=70.15 E-value=1e+02 Score=29.36 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=19.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHHHHHh
Q psy2823 14 RLLSERDKAVLEMDKSKEELERSQATLAT 42 (122)
Q Consensus 14 rl~~E~eka~~e~ek~~eELErsQatl~~ 42 (122)
.|.-.++-++++.+-++.||+.++-+|++
T Consensus 47 ~Lkqq~eEleaeyd~~R~Eldqtkeal~q 75 (772)
T KOG0999|consen 47 DLKQQLEELEAEYDLARTELDQTKEALGQ 75 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777777777777777754
No 135
>KOG0995|consensus
Probab=70.14 E-value=96 Score=29.01 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHH
Q psy2823 81 RSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESM 115 (122)
Q Consensus 81 q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l 115 (122)
..+...+...+.+++.++.+|..+.=+.-.+.+..
T Consensus 338 n~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~ 372 (581)
T KOG0995|consen 338 NLERNKLKRELNKIQSELDRLSKEVWELKLEIEDF 372 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33444455555555555555554444433333333
No 136
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=69.99 E-value=56 Score=26.26 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhHHHHHHH
Q psy2823 12 LSRLLSERDKAVLEMDKS 29 (122)
Q Consensus 12 ~~rl~~E~eka~~e~ek~ 29 (122)
+....+.+..+...+.++
T Consensus 57 ~~~a~a~l~~a~a~~~~~ 74 (327)
T TIGR02971 57 LDVARTQLDEAKARLAQV 74 (327)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 137
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=69.76 E-value=58 Score=26.39 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=6.3
Q ss_pred HHHhHHHHHHHHHHHH
Q psy2823 19 RDKAVLEMDKSKEELE 34 (122)
Q Consensus 19 ~eka~~e~ek~~eELE 34 (122)
++.+...+..+..++.
T Consensus 83 l~~~~a~l~~~~~~l~ 98 (331)
T PRK03598 83 LMQAKANVSVAQAQLD 98 (331)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444433333
No 138
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=69.65 E-value=56 Score=26.13 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2823 47 AELDRLQEKYDKTCADLRR 65 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr 65 (122)
.+++.....+..+.+++..
T Consensus 146 ~~~~~a~~~~~~a~~~l~~ 164 (334)
T TIGR00998 146 EELDHARKALLSAKAALNA 164 (334)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333
No 139
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=69.41 E-value=86 Score=28.20 Aligned_cols=113 Identities=21% Similarity=0.348 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHh----h----hhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q psy2823 10 GTLSRLLSERDKAVLEMDKSKEELERSQATLAT----L----STSAELDRLQEKYDKTCADLR-------RAQAELRVVQ 74 (122)
Q Consensus 10 ~~~~rl~~E~eka~~e~ek~~eELErsQatl~~----l----~tq~EldrlQekldk~~~Elr-------r~Q~ele~tQ 74 (122)
..+..+..-+..+...+..+..|++|.+..+.- + ....++..+....+.....+. -....+....
T Consensus 306 ~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~ 385 (560)
T PF06160_consen 306 KNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIE 385 (560)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 345566667777888888888888888877711 1 122333333333333332222 2223344444
Q ss_pred HHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHhhC
Q psy2823 75 ADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERS 122 (122)
Q Consensus 75 ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE~s 122 (122)
..++.+..+...+.+.+..+..+-.+.+.++.+++..+-.++-.++++
T Consensus 386 ~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~ 433 (560)
T PF06160_consen 386 EQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS 433 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444555555555666666666666666666777766666666666553
No 140
>PRK11281 hypothetical protein; Provisional
Probab=69.16 E-value=1.2e+02 Score=30.28 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRV 72 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~ 72 (122)
...+.++.+++.+-.+++.++.+++.
T Consensus 80 ~~~~~L~k~l~~Ap~~l~~a~~~Le~ 105 (1113)
T PRK11281 80 EETEQLKQQLAQAPAKLRQAQAELEA 105 (1113)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 141
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=69.13 E-value=60 Score=26.27 Aligned_cols=56 Identities=18% Similarity=0.327 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 50 DRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKL 105 (122)
Q Consensus 50 drlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~el 105 (122)
--.+.++...+++|..++..-..+...-..++.+...|..+...+|.++..|+...
T Consensus 122 a~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv 177 (192)
T PF11180_consen 122 AESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQV 177 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555554444433333333344444444444444444443333333
No 142
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=69.11 E-value=50 Score=25.38 Aligned_cols=59 Identities=15% Similarity=0.255 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHH
Q psy2823 48 ELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLE 106 (122)
Q Consensus 48 EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE 106 (122)
.+..+...+......+.....++..-...++.++.++..|+-.+......+.+|+.+..
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~ 175 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENR 175 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555543
No 143
>PRK11281 hypothetical protein; Provisional
Probab=68.85 E-value=1.3e+02 Score=30.00 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 52 LQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKL 105 (122)
Q Consensus 52 lQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~el 105 (122)
+...+.+...+|..+|..+....+.+-..++..++-|..+..++..++.....+
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L 179 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLL 179 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555544444444444444444444444444444444443333
No 144
>KOG4403|consensus
Probab=68.43 E-value=1e+02 Score=28.55 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=19.4
Q ss_pred HhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy2823 21 KAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCAD 62 (122)
Q Consensus 21 ka~~e~ek~~eELErsQatl~~l~tq~EldrlQekldk~~~E 62 (122)
+|...+-+....||-.| .+.+.+.-+|+.|+|+..|
T Consensus 239 ~akehv~km~kdle~Lq------~aEqsl~dlQk~Lekar~e 274 (575)
T KOG4403|consen 239 KAKEHVNKMMKDLEGLQ------RAEQSLEDLQKRLEKAREE 274 (575)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHh
Confidence 44444445554444444 4555666666666666555
No 145
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=68.36 E-value=55 Score=25.54 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=10.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhH
Q psy2823 15 LLSERDKAVLEMDKSKEELERSQ 37 (122)
Q Consensus 15 l~~E~eka~~e~ek~~eELErsQ 37 (122)
+..++..+..++...+..++|.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~r~~ 91 (322)
T TIGR01730 69 ALAQLAAAEAQLELAQRSFERAE 91 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 146
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=67.28 E-value=66 Score=26.05 Aligned_cols=104 Identities=20% Similarity=0.215 Sum_probs=58.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy2823 13 SRLLSERDKAVLEMDKSKEELERSQATLATL--------STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEE 84 (122)
Q Consensus 13 ~rl~~E~eka~~e~ek~~eELErsQatl~~l--------~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~ 84 (122)
..|+...+.+.-.+.+|.++++..--.+-.+ .--.|+..+-.-+..+..+-+++.+..+.+-.+....-..+
T Consensus 25 ~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i 104 (193)
T PF14662_consen 25 AKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEI 104 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555444333111 11246667777777777777777777666666666655666
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHH
Q psy2823 85 KTMQEKVEKSQGEVYRLKAKLENTQGEMESMK 116 (122)
Q Consensus 85 ~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~ 116 (122)
+.||++-.+++.+..-++++..-..++-..|+
T Consensus 105 ~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq 136 (193)
T PF14662_consen 105 ETLQEENGKLLAERDGLKKRSKELATEKATLQ 136 (193)
T ss_pred HHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHH
Confidence 66666666666666666666555544444433
No 147
>KOG3647|consensus
Probab=67.24 E-value=46 Score=28.86 Aligned_cols=51 Identities=25% Similarity=0.367 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHH
Q psy2823 62 DLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEM 112 (122)
Q Consensus 62 Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~ 112 (122)
-+.--+.+++.+...+.++-++...|-.|+++---++.|+++.++..|+-.
T Consensus 113 aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiR 163 (338)
T KOG3647|consen 113 AIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIR 163 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344556667777788888889999999999999999999999999988644
No 148
>KOG0977|consensus
Probab=66.64 E-value=1.1e+02 Score=28.34 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhhHHHHH
Q psy2823 96 GEVYRLKAKLENTQGEME 113 (122)
Q Consensus 96 ~e~~rlq~elE~aQ~e~e 113 (122)
.++.+|+++......++.
T Consensus 169 ~e~~~Lk~en~rl~~~l~ 186 (546)
T KOG0977|consen 169 DELKRLKAENSRLREELA 186 (546)
T ss_pred HHHHHHHHHhhhhHHHHH
Confidence 333333333333333333
No 149
>KOG0018|consensus
Probab=66.23 E-value=1.5e+02 Score=29.85 Aligned_cols=74 Identities=20% Similarity=0.350 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy2823 48 ELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYER 121 (122)
Q Consensus 48 EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE~ 121 (122)
++..+..++.-....+.=+..+++.+...++.-.-++.++...++..+-.+--++.++.+.-+.+..|++++.+
T Consensus 677 e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ 750 (1141)
T KOG0018|consen 677 EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNK 750 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666666666666666666667777777777766667777777777777777776654
No 150
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=66.10 E-value=1.1e+02 Score=28.23 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=19.8
Q ss_pred CCCchHHHHHHHHHHHhHHHHHHHHHHHHHhHHHH
Q psy2823 6 VPPPGTLSRLLSERDKAVLEMDKSKEELERSQATL 40 (122)
Q Consensus 6 ~~~Q~~~~rl~~E~eka~~e~ek~~eELErsQatl 40 (122)
..+|.+++--..+.+.++.++.|++...-+.|-..
T Consensus 400 a~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry 434 (527)
T PF15066_consen 400 ANTQKHLQESRNEKETLQLELKKIKANYVHLQERY 434 (527)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 34445555555556666666666666665555444
No 151
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=65.80 E-value=54 Score=26.39 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=30.5
Q ss_pred HHHHHhhhHHHHHHHHHHh-------hHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 75 ADNERVRSEEKTMQEKVEK-------SQGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 75 ~~~e~~q~e~~~lQ~elEk-------sQ~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
.-.+.++.+.+.....+.+ ++.++.+++.++.++...++....+|.
T Consensus 140 k~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~~~Y~ 192 (258)
T cd07655 140 KAYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTKDKYE 192 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555443 247788888888888888888887775
No 152
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=65.76 E-value=1.3e+02 Score=28.87 Aligned_cols=74 Identities=26% Similarity=0.382 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
..+.-++-++.-+..-|+-++++|.....-...+-.++......++.+.+.+.-+.++++..+..+..|..|++
T Consensus 617 d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele 690 (769)
T PF05911_consen 617 DQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELE 690 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443333333344455555555555555555555555555555555555544
No 153
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=65.68 E-value=65 Score=25.38 Aligned_cols=71 Identities=21% Similarity=0.328 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHH--------HHHHHHhhHHHHHHHHHH
Q psy2823 48 ELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYR--------LKAKLENTQGEMESMKEE 118 (122)
Q Consensus 48 EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~r--------lq~elE~aQ~e~e~l~~E 118 (122)
.+..+..++..+.-++..+.-+-++..-.+.++..+-..|..+++.+--++++ |..++......++....+
T Consensus 87 ~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaq 165 (201)
T PF13851_consen 87 SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQ 165 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666666666666666666666777777777666655 445555555555544333
No 154
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=65.42 E-value=39 Score=22.72 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHH
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRL 101 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rl 101 (122)
..+|++-.+......++.....|....-..+..+..++..|..+++....++...
T Consensus 12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 12 NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555666666666666666666655555555555555566666666665555443
No 155
>KOG0982|consensus
Probab=64.54 E-value=1.2e+02 Score=27.91 Aligned_cols=63 Identities=22% Similarity=0.278 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhH
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADN-------ERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ 109 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~-------e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ 109 (122)
+.+-++-.-+||.+.+..|+--.|+.+.-.+ .+.-+-+-+-+++.+.+|..+.-|..+|++++
T Consensus 318 s~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr 387 (502)
T KOG0982|consen 318 SLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLR 387 (502)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4555666667777777777765555544333 22223444555666666666666666666655
No 156
>KOG0432|consensus
Probab=64.29 E-value=26 Score=34.46 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=41.3
Q ss_pred CcCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 3 DCLVPPPGTLSRLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVV 73 (122)
Q Consensus 3 ~~~~~~Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~~l~tq~EldrlQekldk~~~Elrr~Q~ele~t 73 (122)
+.++.++.++.+|...++|++..+++++.-+..+- +..-.--+=.....+|++++.++++.+-+++.+.
T Consensus 923 ~g~vd~~~e~~kl~kkl~klqk~~~~l~~r~~~~~--~~~k~p~~v~~~~~~Kl~~~~~ei~~~~~~~~~l 991 (995)
T KOG0432|consen 923 KGLVDPDSEIQKLAKKLEKLQKQLDKLQARISSSD--YQEKAPLEVKEKNKEKLKELEAEIENLKAALANL 991 (995)
T ss_pred ccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc--ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45666777777777666666666666665441111 1111111234566788888888888887766654
No 157
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=64.29 E-value=1.4e+02 Score=28.58 Aligned_cols=98 Identities=21% Similarity=0.197 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy2823 12 LSRLLSERDKAVLEMDKSKEELERSQATLATL--STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQE 89 (122)
Q Consensus 12 ~~rl~~E~eka~~e~ek~~eELErsQatl~~l--~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~ 89 (122)
+.-|......+..+..+++.+|....+.+..+ ....+.+++..........+..+.......+........++..+..
T Consensus 354 ~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~ 433 (717)
T PF09730_consen 354 LEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSK 433 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 45566777777777888877777776666443 2223444444444444444444443333333333333333333333
Q ss_pred HHHhhHHHHHHHHHHHHhhH
Q psy2823 90 KVEKSQGEVYRLKAKLENTQ 109 (122)
Q Consensus 90 elEksQ~e~~rlq~elE~aQ 109 (122)
-...+++.+--.|++|-.+-
T Consensus 434 ~A~E~q~~LnsAQDELvtfS 453 (717)
T PF09730_consen 434 LAGESQGSLNSAQDELVTFS 453 (717)
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 158
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=63.86 E-value=69 Score=25.03 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=5.9
Q ss_pred HHHhHHHHHHHHHHHH
Q psy2823 19 RDKAVLEMDKSKEELE 34 (122)
Q Consensus 19 ~eka~~e~ek~~eELE 34 (122)
++++..+++.++..+.
T Consensus 71 ~~~l~~~~~~~~~~i~ 86 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIE 86 (188)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 159
>KOG0978|consensus
Probab=63.60 E-value=1.4e+02 Score=28.50 Aligned_cols=37 Identities=14% Similarity=-0.041 Sum_probs=22.6
Q ss_pred cCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHhHHHH
Q psy2823 4 CLVPPPGTLSRLLSERDKAVLEMDKSKEELERSQATL 40 (122)
Q Consensus 4 ~~~~~Q~~~~rl~~E~eka~~e~ek~~eELErsQatl 40 (122)
||...|+.+.+|--++++....+=++.-+..++-...
T Consensus 462 A~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~ 498 (698)
T KOG0978|consen 462 AFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKH 498 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445677777777776666666666665555554433
No 160
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=63.46 E-value=97 Score=26.63 Aligned_cols=51 Identities=16% Similarity=0.287 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHH
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGE 97 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e 97 (122)
+++-.+|.++....+|-..++..|..+..--....+++.-+++++.--.+-
T Consensus 241 sqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~m 291 (306)
T PF04849_consen 241 SQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAM 291 (306)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444444444444555555555443333
No 161
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=62.46 E-value=82 Score=25.43 Aligned_cols=71 Identities=11% Similarity=0.237 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 48 ELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 48 EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
.+++...+.++...+...+...... ++.--..-++..++.++++++..+.....+++.+=..++.+...++
T Consensus 122 ~~~ksKk~Ye~~Cke~~~a~~~~~~--~~~~~~~ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~ 192 (240)
T cd07672 122 KTMESKKNYEQKCRDKDEAEQAVNR--NANLVNVKQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQ 192 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666665555433221 1111112244457777777777777777777777666666665554
No 162
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=62.35 E-value=73 Score=24.84 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=5.2
Q ss_pred HHHHhhHHHHHHHH
Q psy2823 103 AKLENTQGEMESMK 116 (122)
Q Consensus 103 ~elE~aQ~e~e~l~ 116 (122)
..++.++.++..++
T Consensus 116 ~~l~~~~~~l~~~~ 129 (322)
T TIGR01730 116 ADLEAAKASLASAQ 129 (322)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 163
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=60.20 E-value=93 Score=25.32 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=9.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHH
Q psy2823 99 YRLKAKLENTQGEMESMKEEY 119 (122)
Q Consensus 99 ~rlq~elE~aQ~e~e~l~~El 119 (122)
..++..+......++..+.+|
T Consensus 166 eK~k~~~~~~~~~~e~aKn~Y 186 (253)
T cd07676 166 EKARQQAQIRHQMAEDSKAEY 186 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 164
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=58.72 E-value=61 Score=25.76 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=18.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q psy2823 15 LLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADL 63 (122)
Q Consensus 15 l~~E~eka~~e~ek~~eELErsQatl~~l~tq~EldrlQekldk~~~El 63 (122)
+.+++..+....+++.+=|+++.+.=..+.-+.+|.+++..+|...+.+
T Consensus 137 ~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~ 185 (262)
T PF14257_consen 137 LEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQL 185 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433311122333334444444444333333
No 165
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=58.55 E-value=98 Score=28.18 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2823 48 ELDRLQEKYDKTCADLRRAQ 67 (122)
Q Consensus 48 EldrlQekldk~~~Elrr~Q 67 (122)
+++.+...=++...|..+++
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~ 93 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQ 93 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444443344444444443
No 166
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=58.34 E-value=1.6e+02 Score=27.33 Aligned_cols=77 Identities=13% Similarity=0.194 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHH
Q psy2823 45 TSAELDRLQEKYDKTCADLRRAQAELRVVQADNE-----------RVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEME 113 (122)
Q Consensus 45 tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e-----------~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e 113 (122)
+..-+.+|+.-++.+..-+..++.+-+....-+. .--++..+...++......+..+..++..-.....
T Consensus 392 ~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~ 471 (594)
T PF05667_consen 392 AEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYK 471 (594)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666655555444433331 11124445555556666666666666666666666
Q ss_pred HHHHHHhh
Q psy2823 114 SMKEEYER 121 (122)
Q Consensus 114 ~l~~ElE~ 121 (122)
+|..+|++
T Consensus 472 qL~~e~e~ 479 (594)
T PF05667_consen 472 QLVKELEK 479 (594)
T ss_pred HHHHHHHh
Confidence 66666664
No 167
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=57.98 E-value=3.3 Score=39.08 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 87 MQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 87 lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
++..++-+-+.+..+..+.-.++.+++.++.+++
T Consensus 473 l~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~e 506 (859)
T PF01576_consen 473 LQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIE 506 (859)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444555555544444
No 168
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=57.55 E-value=56 Score=26.05 Aligned_cols=58 Identities=12% Similarity=0.253 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHH
Q psy2823 61 ADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEE 118 (122)
Q Consensus 61 ~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~E 118 (122)
..++++-..+..-..|.|+.+..+..|+++-.+....+.++..+++.+....+.+-..
T Consensus 109 ~~i~k~IkKR~~KllDYD~~~~k~~kl~~K~~kd~~kL~kae~el~~a~~~Ye~lN~~ 166 (224)
T cd07591 109 PEINEAIKKRNHKLLDYDAARAKVRKLIDKPSEDPTKLPRAEKELDEAKEVYETLNDQ 166 (224)
T ss_pred hhHHHHHHHHHhhHhhHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666677777777777777776666666777777777777666655444
No 169
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=57.53 E-value=3.4 Score=37.75 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q psy2823 10 GTLSRLLSERDKAVLEMDKSKEELERSQ 37 (122)
Q Consensus 10 ~~~~rl~~E~eka~~e~ek~~eELErsQ 37 (122)
..+..|..+++.+..++..+...+.++.
T Consensus 200 ~~i~~L~~e~~~L~~e~~~l~~~~~~~~ 227 (713)
T PF05622_consen 200 KQISDLQEEKESLQSENEELQERLSQLE 227 (713)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHhHHHhhhhhhhhhcccCCCC
Confidence 3445556666666666666665555544
No 170
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=57.03 E-value=56 Score=26.43 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhH--HHHHHHHHHHHhhHHHHHHHHHH
Q psy2823 62 DLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQ--GEVYRLKAKLENTQGEMESMKEE 118 (122)
Q Consensus 62 Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ--~e~~rlq~elE~aQ~e~e~l~~E 118 (122)
+++.+=+....-..|.|+.+..+..|+++-.++. .-+.+...+++.++...+.+...
T Consensus 109 ~I~~~I~KR~~Kl~DYD~~r~~~~kl~~K~~k~~~~~KL~kae~el~~Ak~~ye~~N~~ 167 (225)
T cd07590 109 SVNAAIKRREQSLQEYERLQAKVEKLAEKEKTGPNLAKLEQAEKALAAARADFEKQNIK 167 (225)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666677777777777887777665 55666666666666666555443
No 171
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.85 E-value=46 Score=20.72 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=18.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 72 VVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKL 105 (122)
Q Consensus 72 ~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~el 105 (122)
...++.+...++...|..+.++...++..|..++
T Consensus 9 ~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 9 ALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555555555555543
No 172
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=56.55 E-value=86 Score=23.82 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 48 ELDRLQEKYDKTCADLRRAQAEL 70 (122)
Q Consensus 48 EldrlQekldk~~~Elrr~Q~el 70 (122)
.++.+.+.++...++|.-+...+
T Consensus 21 ~~~~~~~e~~~~k~ql~~~d~~i 43 (155)
T PF06810_consen 21 KVDKVKEERDNLKTQLKEADKQI 43 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 173
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=55.66 E-value=95 Score=24.06 Aligned_cols=36 Identities=11% Similarity=0.278 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHH
Q psy2823 82 SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKE 117 (122)
Q Consensus 82 ~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ 117 (122)
..+..+|-+|-..+..-..|+.+++...-.+-++..
T Consensus 84 e~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~ 119 (159)
T PF05384_consen 84 EEAHELQVRLAMLREREKQLRERRDELERRLRNLEE 119 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433333333
No 174
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=55.33 E-value=1e+02 Score=24.38 Aligned_cols=29 Identities=28% Similarity=0.483 Sum_probs=17.0
Q ss_pred HhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 92 EKSQGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 92 EksQ~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
.+.+..+.+|..+|..+......++.+|+
T Consensus 200 ~~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 200 KKLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666655
No 175
>KOG0933|consensus
Probab=52.77 E-value=2.6e+02 Score=28.29 Aligned_cols=72 Identities=13% Similarity=0.300 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 48 ELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY 119 (122)
Q Consensus 48 EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El 119 (122)
.+.-+...++.+...+...-.+++.-.-++++++.+.+.+..++.+..+++..+....+..-++...+...+
T Consensus 788 rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv 859 (1174)
T KOG0933|consen 788 RLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKV 859 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555555555666666666666777777777777777777666666666655444
No 176
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=52.76 E-value=1e+02 Score=23.44 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=10.8
Q ss_pred HHHHhhHHHHHHHHHHHHhhHHHHH
Q psy2823 89 EKVEKSQGEVYRLKAKLENTQGEME 113 (122)
Q Consensus 89 ~elEksQ~e~~rlq~elE~aQ~e~e 113 (122)
++++.+..++..+....+.+..+.+
T Consensus 163 ~k~~~~~~ei~~~~~~~~~~~~~~~ 187 (236)
T PF09325_consen 163 DKVEQAENEIEEAERRVEQAKDEFE 187 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443333
No 177
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=52.14 E-value=33 Score=27.92 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHh
Q psy2823 70 LRVVQADNERVRSEEKTMQEKVEK 93 (122)
Q Consensus 70 le~tQ~~~e~~q~e~~~lQ~elEk 93 (122)
++..|.++.+.+|+++.++-+++.
T Consensus 63 l~~lq~ev~~LrG~~E~~~~~l~~ 86 (263)
T PRK10803 63 LSDNQSDIDSLRGQIQENQYQLNQ 86 (263)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333333333333333333333
No 178
>PF13514 AAA_27: AAA domain
Probab=51.94 E-value=2.3e+02 Score=27.44 Aligned_cols=70 Identities=24% Similarity=0.365 Sum_probs=38.8
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhh-------------------------------hhhHHHHHHHHHHH
Q psy2823 9 PGTLSRLLSERDKAVLEMDKSKEELERSQATLATL-------------------------------STSAELDRLQEKYD 57 (122)
Q Consensus 9 Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~~l-------------------------------~tq~EldrlQekld 57 (122)
...|..+..+++.+...++.++.++....+.+..+ ..-..+.++..++.
T Consensus 173 ~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~~~~~~~ 252 (1111)
T PF13514_consen 173 AAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAELGEVPDFPEDGAERLEQLEEELA 252 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCcCCCChhHHHHHHHHHHHHH
Confidence 34566666666666666666666666655554221 12235555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy2823 58 KTCADLRRAQAELRVVQADNE 78 (122)
Q Consensus 58 k~~~Elrr~Q~ele~tQ~~~e 78 (122)
.+...+...+.++......++
T Consensus 253 ~~~~~l~~~~~~~~~l~~~~~ 273 (1111)
T PF13514_consen 253 EAQAQLERLQEELAQLEEELD 273 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555543
No 179
>PF15294 Leu_zip: Leucine zipper
Probab=51.82 E-value=1.5e+02 Score=25.18 Aligned_cols=31 Identities=29% Similarity=0.228 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhHHHH
Q psy2823 10 GTLSRLLSERDKAVLEMDKSKEELERSQATL 40 (122)
Q Consensus 10 ~~~~rl~~E~eka~~e~ek~~eELErsQatl 40 (122)
+++.-|..|.+++..||++++.-|-..+...
T Consensus 125 g~~~ll~kEi~rLq~EN~kLk~rl~~le~~a 155 (278)
T PF15294_consen 125 GGSELLNKEIDRLQEENEKLKERLKSLEKQA 155 (278)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788999999999999998776665444
No 180
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=51.78 E-value=64 Score=20.88 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELR 71 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele 71 (122)
.|+.|++.++++...++.+...-|.
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566666666666666666664443
No 181
>PRK15396 murein lipoprotein; Provisional
Probab=51.50 E-value=80 Score=21.93 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy2823 47 AELDRLQEKYDKTCADLRRAQ 67 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q 67 (122)
.++++++.+.+...+....+.
T Consensus 25 ~kvd~LssqV~~L~~kvdql~ 45 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLS 45 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333333
No 182
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=51.14 E-value=1.3e+02 Score=24.38 Aligned_cols=96 Identities=23% Similarity=0.326 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy2823 11 TLSRLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEK 90 (122)
Q Consensus 11 ~~~rl~~E~eka~~e~ek~~eELErsQatl~~l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~e 90 (122)
+|+=|..-+.-+++|+-.--.|+=-.-+++- .+...++.....+..+..-++.-..++++-+.++.+..++++.++++
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~--e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrek 88 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLR--ELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREK 88 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhh
Confidence 4455555555555555444444433333331 12344444444455555555555556666666666666666667776
Q ss_pred HHhhHHHHHHHHHHHHhh
Q psy2823 91 VEKSQGEVYRLKAKLENT 108 (122)
Q Consensus 91 lEksQ~e~~rlq~elE~a 108 (122)
+-..-.++..|+..+..+
T Consensus 89 l~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 89 LGQLEAELAELREELACA 106 (202)
T ss_pred hhhhHHHHHHHHHHHHhh
Confidence 666666666666655553
No 183
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=50.12 E-value=1.8e+02 Score=26.85 Aligned_cols=60 Identities=20% Similarity=0.352 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Q psy2823 48 ELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLEN 107 (122)
Q Consensus 48 EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~ 107 (122)
.+..|-.++..+-+-......+-+..+..++.+..+.+.+.+++..+...+.+|+++|+-
T Consensus 421 RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~T 480 (518)
T PF10212_consen 421 RIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELET 480 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445555555555555555556666666666666666666553
No 184
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.38 E-value=91 Score=21.97 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy2823 47 AELDRLQEKYDKTCADLRRAQ 67 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q 67 (122)
-|++-+-|+-.....|..-+|
T Consensus 25 mEieELKEknn~l~~e~q~~q 45 (79)
T COG3074 25 MEIEELKEKNNSLSQEVQNAQ 45 (79)
T ss_pred HHHHHHHHHhhHhHHHHHHHH
Confidence 345555555444444444443
No 185
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=49.18 E-value=1.4e+02 Score=24.16 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHH
Q psy2823 60 CADLRRAQAELRVVQADNERVRS-------EEKTMQEKVEKSQGEVYRLKAKLENTQGEMESM 115 (122)
Q Consensus 60 ~~Elrr~Q~ele~tQ~~~e~~q~-------e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l 115 (122)
..|+.-+..-+-.+....-+... +...|-.+.+..|.+--++..+.+..+.....|
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 44555555444444444433333 333444444444444444444444444444333
No 186
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=49.03 E-value=2.2e+02 Score=26.34 Aligned_cols=100 Identities=16% Similarity=0.306 Sum_probs=64.6
Q ss_pred CCcCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHH----hh------------hhhHHHHHHHHHHHHHHHHHHH
Q psy2823 2 MDCLVPPPGTLSRLLSERDKAVLEMDKSKEELERSQATLA----TL------------STSAELDRLQEKYDKTCADLRR 65 (122)
Q Consensus 2 ~~~~~~~Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~----~l------------~tq~EldrlQekldk~~~Elrr 65 (122)
+|.|..+..-|.+|.+=++.....+..|..+.|.....|- .| .--.++..+..+.+....+++.
T Consensus 386 ~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~ 465 (594)
T PF05667_consen 386 VELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQ 465 (594)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888888888888888888888877771 11 1124666666777777777766
Q ss_pred HHHH------------------------------HHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHH
Q psy2823 66 AQAE------------------------------LRVVQADNERVRSEEKTMQEKVEKSQGEVYRL 101 (122)
Q Consensus 66 ~Q~e------------------------------le~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rl 101 (122)
.... ..+...|.+++-.|...+|+++..+.+-+.|.
T Consensus 466 Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~Rt 531 (594)
T PF05667_consen 466 KEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRT 531 (594)
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5543 33444445555566666666666666555554
No 187
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=48.71 E-value=2.5e+02 Score=26.77 Aligned_cols=31 Identities=16% Similarity=0.387 Sum_probs=16.6
Q ss_pred HHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 90 KVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 90 elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
+++.....+++|..+|.+.-...+.|..++.
T Consensus 475 ei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 475 EIRARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555443
No 188
>KOG0995|consensus
Probab=48.68 E-value=2.4e+02 Score=26.54 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy2823 61 ADLRRAQAELRVVQADNERVRSEEKTMQEK 90 (122)
Q Consensus 61 ~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~e 90 (122)
.+++++-.|+....-++.++.++++++..+
T Consensus 332 ~dve~mn~Er~~l~r~l~~i~~~~d~l~k~ 361 (581)
T KOG0995|consen 332 EDVERMNLERNKLKRELNKIQSELDRLSKE 361 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333333
No 189
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=47.25 E-value=1.5e+02 Score=23.73 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 46 SAELDRLQEKYDKTCADLRRAQAELRV 72 (122)
Q Consensus 46 q~EldrlQekldk~~~Elrr~Q~ele~ 72 (122)
..+++++..++.|+...+.++..+...
T Consensus 170 ~k~~~Kl~~k~~ka~~~~~k~e~~y~~ 196 (239)
T cd07658 170 DKEDEKLEAKRKKGEESRLKAENEYYT 196 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666655555544443
No 190
>KOG0962|consensus
Probab=46.80 E-value=3.4e+02 Score=27.88 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhH
Q psy2823 12 LSRLLSERDKAVLEMDKSKEELERSQ 37 (122)
Q Consensus 12 ~~rl~~E~eka~~e~ek~~eELErsQ 37 (122)
+.-++.|..+....+.+++.++|.++
T Consensus 821 ~~E~~~Ek~~~~~~~~~~rke~E~~~ 846 (1294)
T KOG0962|consen 821 VDELRKEKSKKQESLDKLRKEIECLQ 846 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777
No 191
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=46.30 E-value=86 Score=20.81 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=7.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHhh
Q psy2823 87 MQEKVEKSQGEVYRLKAKLENT 108 (122)
Q Consensus 87 lQ~elEksQ~e~~rlq~elE~a 108 (122)
+..+|.-+-....-|..++++.
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L 51 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERL 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 192
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=46.17 E-value=12 Score=28.92 Aligned_cols=60 Identities=25% Similarity=0.332 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHH
Q psy2823 52 LQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGE 111 (122)
Q Consensus 52 lQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e 111 (122)
++..+....++.++.+.++.+.+.+++..++++...+.++-.|+..+-.|-.+.++.+--
T Consensus 13 l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl 72 (181)
T PF09311_consen 13 LQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFL 72 (181)
T ss_dssp HHHHHHHHHHCCHHHHT-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHH
Confidence 344455555555555555555556666666666666666655555555555555554433
No 193
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=45.83 E-value=1.3e+02 Score=24.16 Aligned_cols=58 Identities=12% Similarity=0.231 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 62 DLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY 119 (122)
Q Consensus 62 Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El 119 (122)
+++++=..+..-..|.|+.+..++.|+++-.+-..-+.+...+++.|+...+.+-.+|
T Consensus 105 ~i~k~I~KR~~KllDYDr~r~~~~kL~~K~~kde~KL~kae~el~~Ak~~Ye~lN~~L 162 (211)
T cd07588 105 EVKKRIAKRGRKLVDYDSARHNLEALKAKKKVDDQKLTKAEEELQQAKKVYEELNTEL 162 (211)
T ss_pred HHHHHHHHHhhHHHhHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566666777888888888888877777778888888888887777665544
No 194
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=45.53 E-value=1.1e+02 Score=22.03 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHH
Q psy2823 56 YDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEME 113 (122)
Q Consensus 56 ldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e 113 (122)
++....-+.|++.=.+.-..+.++-.....++....+.....+..|+.+|+.++....
T Consensus 55 l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~ 112 (139)
T PF05615_consen 55 LAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQ 112 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344443333333333333333333444444444445555555555544443
No 195
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=44.62 E-value=1.1e+02 Score=21.37 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHH
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKA 103 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~ 103 (122)
.++--+.++.-++.+|..++--+--.+.-..+....++..|...+.++...+..|+.
T Consensus 24 ~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 24 KELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 566667777778888877777666666666677778888888888888888888877
No 196
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=44.38 E-value=2.1e+02 Score=24.76 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=12.4
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHH
Q psy2823 18 ERDKAVLEMDKSKEELERSQATLA 41 (122)
Q Consensus 18 E~eka~~e~ek~~eELErsQatl~ 41 (122)
.+++|++.+.-....+...++++.
T Consensus 92 al~qAea~la~a~~~~~~~~a~~~ 115 (352)
T COG1566 92 ALEQAEAALAAAEAQLRNLRAQLA 115 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554443
No 197
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=44.37 E-value=1.1e+02 Score=21.67 Aligned_cols=15 Identities=13% Similarity=0.096 Sum_probs=5.5
Q ss_pred HHHHHhhhHHHHHHH
Q psy2823 75 ADNERVRSEEKTMQE 89 (122)
Q Consensus 75 ~~~e~~q~e~~~lQ~ 89 (122)
++.+.++.++.|--+
T Consensus 52 aaa~aAk~EA~RAN~ 66 (85)
T PRK09973 52 PQIYAAKSEANRANT 66 (85)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 198
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=44.08 E-value=2.2e+02 Score=24.95 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHH
Q psy2823 11 TLSRLLSERDKAVLEMDKSKEELERSQATLA 41 (122)
Q Consensus 11 ~~~rl~~E~eka~~e~ek~~eELErsQatl~ 41 (122)
.+..|..+++.+..++.+++.++...++.+.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 102 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAK 102 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666665553
No 199
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=43.30 E-value=1.7e+02 Score=23.49 Aligned_cols=103 Identities=15% Similarity=0.300 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhHHH-HHhh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 10 GTLSRLLSERDKAVLEMDKSKEELERSQAT-LATL---------STSAELDRLQEKYDKTCADLRRAQAELRVVQADNER 79 (122)
Q Consensus 10 ~~~~rl~~E~eka~~e~ek~~eELErsQat-l~~l---------~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~ 79 (122)
.+|.-+..+.+..-.+.+.+-+.|.--=+. |..+ +-..+..+++..++++-.+|.++. ...++
T Consensus 65 ~sW~~iL~ete~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~K-------k~Y~~ 137 (237)
T cd07657 65 KSWKEIMDSTDQLSKLIKQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLK-------SEYQK 137 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 457778888888777777777776542211 1111 122445555555555555555555 55555
Q ss_pred hhhHHHHHHHHHHhhHH-------HHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 80 VRSEEKTMQEKVEKSQG-------EVYRLKAKLENTQGEMESMKEEY 119 (122)
Q Consensus 80 ~q~e~~~lQ~elEksQ~-------e~~rlq~elE~aQ~e~e~l~~El 119 (122)
.+.+.+....+++++=. .++..+.++..+...+...+-+|
T Consensus 138 ~~~e~e~Ar~k~e~a~~~~~~~~~~~eKak~k~~~~~~k~~~akNeY 184 (237)
T cd07657 138 LLEDYKAAKSKFEEAVVKGGRGGRKLDKARDKYQKACRKLHLCHNDY 184 (237)
T ss_pred HHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666666644 44555555555555555544443
No 200
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=43.08 E-value=2.7e+02 Score=25.71 Aligned_cols=90 Identities=23% Similarity=0.282 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHH
Q psy2823 11 TLSRLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNER----VRSEEKT 86 (122)
Q Consensus 11 ~~~rl~~E~eka~~e~ek~~eELErsQatl~~l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~----~q~e~~~ 86 (122)
.|..|...+..+.+..-.+..|-+..+-.|. .+..+.+.+.+.+..+...+.+++.||+.|..--+. .-.++..
T Consensus 421 RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~--~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLas 498 (518)
T PF10212_consen 421 RIEELTSQLQHADSKAVHFYAECRALQKRLE--SAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLAS 498 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544443 223455566666777777777777777766554432 1135666
Q ss_pred HHHHHHhhHHHHHHHH
Q psy2823 87 MQEKVEKSQGEVYRLK 102 (122)
Q Consensus 87 lQ~elEksQ~e~~rlq 102 (122)
|.++|.+-..+++.|+
T Consensus 499 mNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 499 MNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6666666666666554
No 201
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=42.40 E-value=2.1e+02 Score=26.08 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=10.9
Q ss_pred HHHHHHhhHHHHHHHHHHHH
Q psy2823 87 MQEKVEKSQGEVYRLKAKLE 106 (122)
Q Consensus 87 lQ~elEksQ~e~~rlq~elE 106 (122)
++.++++...++.+|+..++
T Consensus 102 le~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 102 DQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555553
No 202
>KOG0979|consensus
Probab=42.10 E-value=3.8e+02 Score=27.04 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=9.6
Q ss_pred HHHhHHHHHHHHHHHHH
Q psy2823 19 RDKAVLEMDKSKEELER 35 (122)
Q Consensus 19 ~eka~~e~ek~~eELEr 35 (122)
+++.........++||.
T Consensus 267 l~k~~~pi~~~~eeLe~ 283 (1072)
T KOG0979|consen 267 LEKEIKPIEDKKEELES 283 (1072)
T ss_pred HHHhhhhhhhhhhhHHh
Confidence 34444555566666666
No 203
>PHA01750 hypothetical protein
Probab=42.06 E-value=91 Score=21.75 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=21.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Q psy2823 72 VVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLEN 107 (122)
Q Consensus 72 ~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~ 107 (122)
.++.++++...+++.+..+-++.+..+..++.++++
T Consensus 39 IV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~dk 74 (75)
T PHA01750 39 IVNSELDNLKTEIEELKIKQDELSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 445566666666666666666666666666665543
No 204
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=41.67 E-value=1.8e+02 Score=23.12 Aligned_cols=103 Identities=18% Similarity=0.236 Sum_probs=59.4
Q ss_pred CchHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2823 8 PPGTLSRLLSERDKAVLEMDKSKEELERSQATLAT-----LSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRS 82 (122)
Q Consensus 8 ~Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~~-----l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~ 82 (122)
-|--++.|..+..-++.-++.-...|-.++..+.. -.+..++..++.-++.+...+..+..=....|.++
T Consensus 65 Kq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el----- 139 (188)
T PF05335_consen 65 KQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQEL----- 139 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 34456667777777776666666677777766632 14555666666666666666555554444444333
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHH
Q psy2823 83 EEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKE 117 (122)
Q Consensus 83 e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ 117 (122)
.--..=|+.++.-+..|...|..+..++++++.
T Consensus 140 --~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 140 --AEKTQLLEAAKRRVEELQRQLQAARADYEKTKK 172 (188)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555566666666666666555554
No 205
>KOG4674|consensus
Probab=41.56 E-value=4.7e+02 Score=27.96 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=16.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHHHH
Q psy2823 13 SRLLSERDKAVLEMDKSKEELERSQATL 40 (122)
Q Consensus 13 ~rl~~E~eka~~e~ek~~eELErsQatl 40 (122)
.||..+++++..+...++--+-..|+..
T Consensus 762 ~rL~~e~~~l~~e~~~L~~~l~~lQt~~ 789 (1822)
T KOG4674|consen 762 ERLSQELEKLSAEQESLQLLLDNLQTQK 789 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666665555555544
No 206
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=41.49 E-value=1.3e+02 Score=21.50 Aligned_cols=42 Identities=29% Similarity=0.483 Sum_probs=30.3
Q ss_pred HHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 78 ERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY 119 (122)
Q Consensus 78 e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El 119 (122)
+.....+..+.+++..++.+..++..++.+...++..++.|.
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334445666777777777777888888888777777777664
No 207
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=41.40 E-value=2.5e+02 Score=24.69 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=15.3
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHhh
Q psy2823 18 ERDKAVLEMDKSKEELERSQATLATL 43 (122)
Q Consensus 18 E~eka~~e~ek~~eELErsQatl~~l 43 (122)
+...+..++..++.++.+.++.+..+
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~ 97 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDAL 97 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666555444
No 208
>PRK14162 heat shock protein GrpE; Provisional
Probab=41.29 E-value=90 Score=24.90 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2823 45 TSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVR 81 (122)
Q Consensus 45 tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q 81 (122)
.+.++..+..+++....++..+...+-+.++++++.+
T Consensus 37 ~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~r 73 (194)
T PRK14162 37 KQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQ 73 (194)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777777777777777766667677766633
No 209
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=40.76 E-value=2.2e+02 Score=23.86 Aligned_cols=40 Identities=30% Similarity=0.483 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy2823 82 SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYER 121 (122)
Q Consensus 82 ~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE~ 121 (122)
.++..+++++++++.++......++.+=.++......|..
T Consensus 168 ~q~~K~~~k~~k~~~~~~k~~~~Y~~~l~~L~~~~~~y~e 207 (258)
T cd07679 168 EQLKKLQDKVEKCKQDVLKTKEKYEKSLKELDQTTPQYME 207 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4667788889999999999999988888888877776653
No 210
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=40.58 E-value=2.4e+02 Score=24.39 Aligned_cols=109 Identities=14% Similarity=0.264 Sum_probs=0.0
Q ss_pred cCCCCchHHHHHHHHHH----HhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy2823 4 CLVPPPGTLSRLLSERD----KAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADN-- 77 (122)
Q Consensus 4 ~~~~~Q~~~~rl~~E~e----ka~~e~ek~~eELErsQatl~~l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~-- 77 (122)
++.++..+|-+|+.... ++...++-+-..|-.+++.+..|. .++-+.-..|-.-..-|..+|-+|..+|...
T Consensus 120 afqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe--~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE 197 (305)
T PF14915_consen 120 AFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLE--IELHHTRDALREKTLALESVQRDLSQTQCQIKE 197 (305)
T ss_pred HHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ------------HHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHH
Q psy2823 78 ------------ERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMES 114 (122)
Q Consensus 78 ------------e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~ 114 (122)
.+.-+.-+.++++|-..|++-.-|+-.|+.|+.....
T Consensus 198 ~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ 246 (305)
T PF14915_consen 198 IEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADN 246 (305)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 211
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=40.57 E-value=1.7e+02 Score=23.67 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 61 ADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY 119 (122)
Q Consensus 61 ~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El 119 (122)
.+++.+=+.+..-..|.|+.+..+..++++-.+--.-+.+...+++.|+...+.+-.+|
T Consensus 104 ~~i~~~i~KR~~KllDYD~~R~~~~kl~~k~~kD~~KL~kAe~el~~Ak~~ye~lN~~L 162 (211)
T cd07612 104 PDVKERVAKRGRKLVDYDSARHHLEALQNAKKKDDAKIAKAEEEFNRAQVVFEDINREL 162 (211)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556677777788888888888887666556666777777777776666554443
No 212
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=40.32 E-value=1.7e+02 Score=22.51 Aligned_cols=64 Identities=17% Similarity=0.388 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHH
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEME 113 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e 113 (122)
.++...|++++....+|...+..+. .+.....+....++..+...-+.+..|+++++..++.++
T Consensus 117 ~~i~~~q~~~~~~i~~L~~f~~~l~---~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 117 DQIQKNQDKVQALINELNDFKDKLQ---KDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 6788888888888888888886544 444445556677888888888888888888887776543
No 213
>KOG0804|consensus
Probab=39.69 E-value=3.1e+02 Score=25.30 Aligned_cols=76 Identities=13% Similarity=0.215 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy2823 46 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYER 121 (122)
Q Consensus 46 q~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE~ 121 (122)
++++...-+.+.....+..-+.-+...+.+....+-.-+.++++++.+-+.++.-++..-.+....+......|++
T Consensus 346 qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~ 421 (493)
T KOG0804|consen 346 QSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKE 421 (493)
T ss_pred HHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
No 214
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=39.32 E-value=2.5e+02 Score=24.25 Aligned_cols=9 Identities=33% Similarity=0.615 Sum_probs=3.3
Q ss_pred HHHHHHHhH
Q psy2823 29 SKEELERSQ 37 (122)
Q Consensus 29 ~~eELErsQ 37 (122)
++..|++.+
T Consensus 239 ~~~~L~kl~ 247 (359)
T PF10498_consen 239 TKSQLDKLQ 247 (359)
T ss_pred HHHHHHHHH
Confidence 333333333
No 215
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=38.54 E-value=1.7e+02 Score=21.85 Aligned_cols=68 Identities=24% Similarity=0.371 Sum_probs=41.5
Q ss_pred CCchHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 7 PPPGTLSRLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQ 74 (122)
Q Consensus 7 ~~Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~~l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ 74 (122)
++..++..+..+...+..++..++.+.-...+.|..|.+..=.+.+.........++..+...|...+
T Consensus 69 ~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 69 PSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777777777777776665444444445555555555555554444433
No 216
>PRK14148 heat shock protein GrpE; Provisional
Probab=38.53 E-value=1.2e+02 Score=24.17 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2823 46 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVR 81 (122)
Q Consensus 46 q~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q 81 (122)
..+++.+.++++....++..+...+-+.++++++.+
T Consensus 39 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~r 74 (195)
T PRK14148 39 EEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIR 74 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666633
No 217
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=38.38 E-value=2.2e+02 Score=23.17 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 53 QEKYDKTCADLRRAQAELRVVQADNER 79 (122)
Q Consensus 53 Qekldk~~~Elrr~Q~ele~tQ~~~e~ 79 (122)
|-+++..+.|+.+++-.+|..+.+++.
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~ 86 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQ 86 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333344444444444333333343333
No 218
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=38.12 E-value=2.1e+02 Score=23.03 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2823 48 ELDRLQEKYDKTCADLRRAQAE 69 (122)
Q Consensus 48 EldrlQekldk~~~Elrr~Q~e 69 (122)
++++++.+++|+...+.++..+
T Consensus 155 e~~K~~~Kl~K~~~~~~k~~~~ 176 (240)
T cd07672 155 QQEKLFAKLAQSKQNAEDADRL 176 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 219
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=37.67 E-value=2e+02 Score=22.59 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=18.4
Q ss_pred hHHHHHHHHHH----hhHHHHHHHHHHHHhhHHHHHHHHHH
Q psy2823 82 SEEKTMQEKVE----KSQGEVYRLKAKLENTQGEMESMKEE 118 (122)
Q Consensus 82 ~e~~~lQ~elE----ksQ~e~~rlq~elE~aQ~e~e~l~~E 118 (122)
+++.+|.++.| .+-.++.-.++.|-.++.|.+-|..+
T Consensus 106 s~L~~Lr~q~e~e~keaa~qL~~~~a~L~~v~~ERD~Lr~k 146 (152)
T PF15186_consen 106 SELKRLREQREMERKEAAFQLQLTQAALQEVQKERDLLRWK 146 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444 45555555555555555555544443
No 220
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=37.59 E-value=3.4e+02 Score=25.25 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=7.7
Q ss_pred HHHHHHHHhHHHHHHHH
Q psy2823 14 RLLSERDKAVLEMDKSK 30 (122)
Q Consensus 14 rl~~E~eka~~e~ek~~ 30 (122)
+|+.+...+..+++.+.
T Consensus 84 ~Lq~E~~~L~kElE~L~ 100 (617)
T PF15070_consen 84 QLQAEAEHLRKELESLE 100 (617)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444444
No 221
>PF15237 PTRF_SDPR: PTRF/SDPR family
Probab=37.19 E-value=98 Score=26.02 Aligned_cols=67 Identities=22% Similarity=0.305 Sum_probs=37.5
Q ss_pred CCCcCCCCchHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 1 MMDCLVPPPGTLSRLLSERDKAVLEMDKSKEELERSQATLATL-----STSAELDRLQEKYDKTCADLRRAQAELRVVQA 75 (122)
Q Consensus 1 ~~~~~~~~Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~~l-----~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~ 75 (122)
|+|++...|..++.=+.+.+++. -..|..|..| +|+.=+.+|=++..|-.+.+.-.+.-+++...
T Consensus 17 ~vD~vQ~~Q~~mE~RQ~emE~sV----------~~IQ~dl~KLsk~H~~TsnTV~KLLeK~RKVS~~vk~Vr~r~ekQ~~ 86 (246)
T PF15237_consen 17 MVDSVQETQQRMEERQREMEGSV----------KGIQGDLTKLSKSHSTTSNTVNKLLEKTRKVSVNVKEVRERLEKQAA 86 (246)
T ss_pred HHHHHHHHHHHHHHHHHHhhccH----------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34444444555444444444442 1234444443 46677788877777777777766655555544
Q ss_pred HH
Q psy2823 76 DN 77 (122)
Q Consensus 76 ~~ 77 (122)
+.
T Consensus 87 qV 88 (246)
T PF15237_consen 87 QV 88 (246)
T ss_pred HH
Confidence 44
No 222
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=36.66 E-value=2.6e+02 Score=23.61 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 97 EVYRLKAKLENTQGEMESMKEEY 119 (122)
Q Consensus 97 e~~rlq~elE~aQ~e~e~l~~El 119 (122)
++..+...+..++.++...+..+
T Consensus 228 ~~~~~~~~l~~~~~~l~~~~~~l 250 (421)
T TIGR03794 228 ELETVEARIKEARYEIEELENKL 250 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555444444
No 223
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=36.33 E-value=2.5e+02 Score=23.22 Aligned_cols=39 Identities=23% Similarity=0.443 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 82 SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 82 ~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
.+++.++.++++.+..+.....+++++=..++.....|.
T Consensus 168 ~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~~~~y~ 206 (258)
T cd07680 168 EQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKTTPQYM 206 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 456668888888888888888888877777766655554
No 224
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=35.89 E-value=2.2e+02 Score=22.49 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=7.1
Q ss_pred HHHHHHHHhHHHHHHHHH
Q psy2823 14 RLLSERDKAVLEMDKSKE 31 (122)
Q Consensus 14 rl~~E~eka~~e~ek~~e 31 (122)
+|..+..-+...++.+..
T Consensus 16 ~L~n~l~elq~~l~~l~~ 33 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRK 33 (194)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344333333333333
No 225
>KOG0243|consensus
Probab=35.66 E-value=4.7e+02 Score=26.31 Aligned_cols=97 Identities=15% Similarity=0.208 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHhHHHHHhh-----hhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q psy2823 22 AVLEMDKSKEELERSQATLATL-----STS--AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKS 94 (122)
Q Consensus 22 a~~e~ek~~eELErsQatl~~l-----~tq--~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEks 94 (122)
...|.+||+.+|--+----|-. -++ .|.....++++....++.-....+...+..+-...-...-|.+++++.
T Consensus 409 ~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~ 488 (1041)
T KOG0243|consen 409 LYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKL 488 (1041)
T ss_pred HHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4556666666654433211111 112 255566677777777777777666666666643333444556666666
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q psy2823 95 QGEVYRLKAKLENTQGEMESMKEE 118 (122)
Q Consensus 95 Q~e~~rlq~elE~aQ~e~e~l~~E 118 (122)
+..++..-.+++..+++...++..
T Consensus 489 k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 489 KSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665555555555555555544
No 226
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=35.46 E-value=2e+02 Score=21.82 Aligned_cols=32 Identities=31% Similarity=0.583 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhh
Q psy2823 12 LSRLLSERDKAVLEMDKSKEELERSQATLATL 43 (122)
Q Consensus 12 ~~rl~~E~eka~~e~ek~~eELErsQatl~~l 43 (122)
+--....|+++..+.+....+|.+..+.+..+
T Consensus 123 vk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl 154 (236)
T PF09325_consen 123 VKEALNRRDKKLIEYQNAEKELQKKKAQLEKL 154 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344455555555555555555555555444
No 227
>KOG0963|consensus
Probab=35.29 E-value=4e+02 Score=25.33 Aligned_cols=71 Identities=17% Similarity=0.390 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 48 ELDRLQEKYDKTCADLRRAQAELRVVQA----DNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY 119 (122)
Q Consensus 48 EldrlQekldk~~~Elrr~Q~ele~tQ~----~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El 119 (122)
.++.+-..|+.--.+..++=++.++.++ .++....++..+-.++...-+.+..+..+|.+. ++.+.|+.||
T Consensus 279 ~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~EL 353 (629)
T KOG0963|consen 279 DIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKEL 353 (629)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHH
Confidence 4555555555555555555555555444 346677788888888888888888888888765 8888888876
No 228
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=35.24 E-value=2.8e+02 Score=23.50 Aligned_cols=7 Identities=29% Similarity=0.387 Sum_probs=2.6
Q ss_pred HHhHHHH
Q psy2823 20 DKAVLEM 26 (122)
Q Consensus 20 eka~~e~ 26 (122)
+.|.+.+
T Consensus 102 ~~A~a~l 108 (390)
T PRK15136 102 EKAKTAL 108 (390)
T ss_pred HHHHHHH
Confidence 3333333
No 229
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=34.51 E-value=3.5e+02 Score=24.40 Aligned_cols=43 Identities=16% Similarity=0.323 Sum_probs=33.3
Q ss_pred HHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 78 ERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 78 e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
..+...+.++...|+.....|..+...++.+...++.+..+.+
T Consensus 447 ~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~ 489 (560)
T PF06160_consen 447 FDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTE 489 (560)
T ss_pred HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445577888888888888888888888888888888876643
No 230
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=34.32 E-value=2e+02 Score=21.45 Aligned_cols=29 Identities=21% Similarity=0.412 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 48 ELDRLQEKYDKTCADLRRAQAELRVVQAD 76 (122)
Q Consensus 48 EldrlQekldk~~~Elrr~Q~ele~tQ~~ 76 (122)
++..+++++.....++..+.++|....+.
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~ 108 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSE 108 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44455555555555555555554444333
No 231
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=34.11 E-value=3.6e+02 Score=24.39 Aligned_cols=64 Identities=14% Similarity=0.261 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Q psy2823 44 STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLEN 107 (122)
Q Consensus 44 ~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~ 107 (122)
++..=+||+-+.|..-.....|+...+..+..-+..++.+...++-+++..-.....|++.+|.
T Consensus 429 ~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 429 SSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445777777777777777777776666666666666666666777777666666666666654
No 232
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=34.09 E-value=2.8e+02 Score=23.20 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 45 TSAELDRLQEKYDKTCADLRRAQAELRVVQADNER 79 (122)
Q Consensus 45 tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~ 79 (122)
+..++++++++++|+..++.++...-+.+=.+++.
T Consensus 166 ~~~q~~K~~~k~~k~~~~~~k~~~~Y~~~l~~L~~ 200 (258)
T cd07679 166 NPEQLKKLQDKVEKCKQDVLKTKEKYEKSLKELDQ 200 (258)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44688889999888888888888665555445443
No 233
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=33.96 E-value=2.3e+02 Score=22.24 Aligned_cols=37 Identities=32% Similarity=0.474 Sum_probs=28.8
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy2823 47 AELDRLQEKYD----KTCADLRRAQAELRVVQADNERVRSE 83 (122)
Q Consensus 47 ~EldrlQekld----k~~~Elrr~Q~ele~tQ~~~e~~q~e 83 (122)
++|.++-+.-+ .++.+|+-+|+-|..++.++|-.+..
T Consensus 106 s~L~~Lr~q~e~e~keaa~qL~~~~a~L~~v~~ERD~Lr~k 146 (152)
T PF15186_consen 106 SELKRLREQREMERKEAAFQLQLTQAALQEVQKERDLLRWK 146 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777 88888888888888888888775443
No 234
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=33.45 E-value=1.6e+02 Score=27.86 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 45 TSAELDRLQEKYDKTCADLRRAQAELRV 72 (122)
Q Consensus 45 tq~EldrlQekldk~~~Elrr~Q~ele~ 72 (122)
...|+.|+..++++...++.+.+..|.+
T Consensus 809 ~~~e~~rL~K~l~kl~~ei~~~~~kL~n 836 (874)
T PRK05729 809 VEAELARLEKELAKLEKEIERVEKKLSN 836 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456666666666666666666655444
No 235
>PRK14163 heat shock protein GrpE; Provisional
Probab=33.44 E-value=1.4e+02 Score=24.37 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERV 80 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~ 80 (122)
.+.+.+..+++....++..+...+-+.++++++.
T Consensus 40 ~~~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~ 73 (214)
T PRK14163 40 AATAGLTAQLDQVRTALGERTADLQRLQAEYQNY 73 (214)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777776666777777663
No 236
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=33.35 E-value=2.2e+02 Score=21.65 Aligned_cols=29 Identities=21% Similarity=0.254 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHHHH
Q psy2823 12 LSRLLSERDKAVLEMDKSKEELERSQATL 40 (122)
Q Consensus 12 ~~rl~~E~eka~~e~ek~~eELErsQatl 40 (122)
|....++.+++..++..++..|.-...++
T Consensus 15 i~~~K~~~~~~~~e~~~~k~ql~~~d~~i 43 (155)
T PF06810_consen 15 IEAPKAKVDKVKEERDNLKTQLKEADKQI 43 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444333
No 237
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=33.24 E-value=2.3e+02 Score=22.96 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=17.1
Q ss_pred HHHHHHHHHhHHHHHHH-HHHHHHhHHHH
Q psy2823 13 SRLLSERDKAVLEMDKS-KEELERSQATL 40 (122)
Q Consensus 13 ~rl~~E~eka~~e~ek~-~eELErsQatl 40 (122)
..+-...+.+-.+++.+ +..++..+.++
T Consensus 68 ~~~~e~y~~~~~~l~~~~~~~~~~~~~~v 96 (225)
T cd07590 68 RNLVEALDSVTTQLDKTVQELVNLIQKTF 96 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555666666666654 66677777665
No 238
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=33.14 E-value=1.9e+02 Score=20.89 Aligned_cols=42 Identities=10% Similarity=0.173 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHH
Q psy2823 56 YDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGE 97 (122)
Q Consensus 56 ldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e 97 (122)
++--..+.......-..+....+.++.+.+.|..+|+.++..
T Consensus 69 ~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~ 110 (139)
T PF05615_consen 69 LEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRV 110 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444455555555555555555543
No 239
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=33.02 E-value=2e+02 Score=21.11 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=32.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy2823 43 LSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVE 92 (122)
Q Consensus 43 l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elE 92 (122)
+.-|.-...+.+.|......||+++.|..-..-.+++.-.-.+.||++++
T Consensus 22 ieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 22 IEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667788888888888998886666655555553334444444444
No 240
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=33.01 E-value=2.2e+02 Score=27.89 Aligned_cols=64 Identities=9% Similarity=0.119 Sum_probs=29.2
Q ss_pred CchHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 8 PPGTLSRLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVV 73 (122)
Q Consensus 8 ~Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~~l~tq~EldrlQekldk~~~Elrr~Q~ele~t 73 (122)
...++.||..+++++..+++++..+|.... +-.+.-..-+++..+++.+...++......+...
T Consensus 840 ~~~e~~rLekel~kl~Kel~kl~~~L~n~~--f~~kap~~~veka~~kl~~~~~~l~~le~~l~~L 903 (1052)
T PRK14900 840 LAAETARVDKEIGKVDQDLAVLERKLQNPS--FVQNAPPAVVEKDRARAEELREKRGKLEAHRAML 903 (1052)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcCch--hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433 1122223445555555555555555555444443
No 241
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=32.89 E-value=2.3e+02 Score=21.80 Aligned_cols=17 Identities=12% Similarity=0.475 Sum_probs=5.5
Q ss_pred HHHHHhhHHHHHHHHHH
Q psy2823 102 KAKLENTQGEMESMKEE 118 (122)
Q Consensus 102 q~elE~aQ~e~e~l~~E 118 (122)
...|..--+.+..|+.+
T Consensus 155 ~~~l~~~~g~I~~L~~~ 171 (184)
T PF05791_consen 155 QSILAGENGDIPQLQKQ 171 (184)
T ss_dssp HHHHHHTT--HHHHHHH
T ss_pred HHHHhcccCCHHHHHHH
Confidence 33333333333333333
No 242
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=32.58 E-value=3.1e+02 Score=23.29 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=28.9
Q ss_pred HHHHHHHHHhh--hHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 71 RVVQADNERVR--SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY 119 (122)
Q Consensus 71 e~tQ~~~e~~q--~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El 119 (122)
.+.|-|+|++. .+..-|.++++-.+..+..++.+++.-..++++++...
T Consensus 99 ~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~ 149 (302)
T PF09738_consen 99 SNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAH 149 (302)
T ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444554433 46666777777777666666666666555565555443
No 243
>KOG0432|consensus
Probab=32.29 E-value=1.4e+02 Score=29.65 Aligned_cols=62 Identities=27% Similarity=0.403 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHhhHHHHHHHHHHHHh
Q psy2823 45 TSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSE-EKTMQEKVEKSQGEVYRLKAKLEN 107 (122)
Q Consensus 45 tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e-~~~lQ~elEksQ~e~~rlq~elE~ 107 (122)
.+.|+.+++.|++|++.++.+.++-+...-+. .++-.. .+....|++++-.+++.+.+.+++
T Consensus 928 ~~~e~~kl~kkl~klqk~~~~l~~r~~~~~~~-~k~p~~v~~~~~~Kl~~~~~ei~~~~~~~~~ 990 (995)
T KOG0432|consen 928 PDSEIQKLAKKLEKLQKQLDKLQARISSSDYQ-EKAPLEVKEKNKEKLKELEAEIENLKAALAN 990 (995)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45899999999999998888888554221111 111111 122334455555555555555544
No 244
>PLN02943 aminoacyl-tRNA ligase
Probab=32.19 E-value=1.8e+02 Score=28.17 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 45 TSAELDRLQEKYDKTCADLRRAQAELRV 72 (122)
Q Consensus 45 tq~EldrlQekldk~~~Elrr~Q~ele~ 72 (122)
...|..||..++++...++.+.+..|-+
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~kLsN 914 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAARLSS 914 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3466777777777777777777765544
No 245
>PRK14139 heat shock protein GrpE; Provisional
Probab=31.82 E-value=1.6e+02 Score=23.29 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2823 45 TSAELDRLQEKYDKTCADLRRAQAELRVVQADNERV 80 (122)
Q Consensus 45 tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~ 80 (122)
+-.+++.+..+++....++..+...+-+.++++++.
T Consensus 30 ~~~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~ 65 (185)
T PRK14139 30 AEDAAPALEAELAEAEAKAAELQDSFLRAKAETENV 65 (185)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777788888888777777777777777777763
No 246
>PRK09634 nusB transcription antitermination protein NusB; Provisional
Probab=31.78 E-value=1.5e+02 Score=23.85 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEV 98 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~ 98 (122)
+=....+|.||.+++||.+++-.|-.++..--...+=-..+++=++.++.-+
T Consensus 40 ~l~~~~~~~l~~~~~el~~~~~~l~~s~~~~~~~~~~r~~l~~~~~~~~~~~ 91 (207)
T PRK09634 40 TLTQEVRETLDTAAAELERAQQRLLDSEGDASDLESARTMLQEALTLAETAI 91 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHH
Confidence 3446788999999999999997766654433222222233455555555433
No 247
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=31.49 E-value=1.9e+02 Score=20.51 Aligned_cols=21 Identities=14% Similarity=0.406 Sum_probs=8.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHH
Q psy2823 86 TMQEKVEKSQGEVYRLKAKLE 106 (122)
Q Consensus 86 ~lQ~elEksQ~e~~rlq~elE 106 (122)
.++.....++.+..|.-..++
T Consensus 49 ~a~aaa~aAk~EA~RAN~RiD 69 (85)
T PRK09973 49 ALRPQIYAAKSEANRANTRLD 69 (85)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 344444444444444444433
No 248
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=31.36 E-value=1.5e+02 Score=19.16 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 48 ELDRLQEKYDKTCADLRRAQAELRVV 73 (122)
Q Consensus 48 EldrlQekldk~~~Elrr~Q~ele~t 73 (122)
-+.+++..++.+..-|..|..|+..+
T Consensus 26 ~i~~~e~~l~ea~~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 26 LIREIERDLDEAEELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44555555555555555555555443
No 249
>PRK14140 heat shock protein GrpE; Provisional
Probab=31.07 E-value=1.6e+02 Score=23.45 Aligned_cols=37 Identities=30% Similarity=0.214 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2823 44 STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERV 80 (122)
Q Consensus 44 ~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~ 80 (122)
....+|+.+..++++...++..+...+-+.++++++.
T Consensus 34 ~~~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~ 70 (191)
T PRK14140 34 SEAELLDEEQAKIAELEAKLDELEERYLRLQADFENY 70 (191)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888888887777777777777777777663
No 250
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=30.38 E-value=3.1e+02 Score=22.52 Aligned_cols=87 Identities=18% Similarity=0.296 Sum_probs=59.7
Q ss_pred CCCchHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHh---------h------------------h--------------
Q psy2823 6 VPPPGTLSRLLSERDKAVLEMDKSKEELERSQATLAT---------L------------------S-------------- 44 (122)
Q Consensus 6 ~~~Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~~---------l------------------~-------------- 44 (122)
...|..+..+.++..+...=+.+|..+|...++..+. + .
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 4567788888899999888899999999998865200 0 0
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy2823 45 --TSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVE 92 (122)
Q Consensus 45 --tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elE 92 (122)
-.++=||.-.+......|+++...+....+.+.++.+.|+-.|=+|.-
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 013556777777777777777776666666666666666666655543
No 251
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=30.28 E-value=2.4e+02 Score=21.17 Aligned_cols=54 Identities=22% Similarity=0.386 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLEN 107 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~ 107 (122)
+-+|++=.++|....=...++.+. ..+++++.++..+++..+.-+.-|..++..
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV-------~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEV-------TEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666555555555444 444555555666666666666666665543
No 252
>PRK14145 heat shock protein GrpE; Provisional
Probab=30.10 E-value=1.9e+02 Score=23.15 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2823 44 STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVR 81 (122)
Q Consensus 44 ~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q 81 (122)
.+..+++.+.++++++..++..+...+-+.++++++.+
T Consensus 42 ~~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~r 79 (196)
T PRK14145 42 QTVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYR 79 (196)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888777777777777777777643
No 253
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.07 E-value=2.8e+02 Score=21.89 Aligned_cols=67 Identities=21% Similarity=0.242 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh-----HHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKS-----QGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEks-----Q~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
+.+.++|......-..|.++... .+..+.+++..+..++++ ..++..++.++.++...++....+|.
T Consensus 106 ~~~~k~qk~~~~~~~~l~KaKk~-------Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~ 177 (239)
T cd07647 106 DIMKRSQKNKKELYKKTMKAKKS-------YEQKCREKDKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADSAYK 177 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455554444444455554433 333333443333333322 34667777777777777777666664
No 254
>PF13514 AAA_27: AAA domain
Probab=29.73 E-value=5.3e+02 Score=25.07 Aligned_cols=110 Identities=23% Similarity=0.349 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhh-------hhhH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 11 TLSRLLSERDKAVLEMDKSKEELERSQATLATL-------STSA----------ELDRLQEKYDKTCADLRRAQAELRVV 73 (122)
Q Consensus 11 ~~~rl~~E~eka~~e~ek~~eELErsQatl~~l-------~tq~----------EldrlQekldk~~~Elrr~Q~ele~t 73 (122)
.+.++..+...+...++.+..++......+..+ .-.. ...+....+.+...++.....++...
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~e~~~~~~~~~~~ 322 (1111)
T PF13514_consen 243 RLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEAELAELEAELRAL 322 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777777777777777666332 1111 22222222222222222222222222
Q ss_pred HHHHH---------------HhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 74 QADNE---------------RVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 74 Q~~~e---------------~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
...+. .....+..+..+.......+..+...++....+++.+..+++
T Consensus 323 ~~~lg~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 384 (1111)
T PF13514_consen 323 LAQLGPDWDEEDLEALDPSLAARERIRELLQEREQLEQALAQARRELEEAERELEQLQAELA 384 (1111)
T ss_pred HHhcCCCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22221 222355555556666666666666666666666666665543
No 255
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.56 E-value=4.9e+02 Score=24.63 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=7.0
Q ss_pred HHHHHhhHHHHHHHHHH
Q psy2823 102 KAKLENTQGEMESMKEE 118 (122)
Q Consensus 102 q~elE~aQ~e~e~l~~E 118 (122)
..+|+.+...+..|+..
T Consensus 638 ~~EL~~~~~~l~~l~~s 654 (717)
T PF10168_consen 638 KKELERMKDQLQDLKAS 654 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 256
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=29.48 E-value=2.4e+02 Score=21.09 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=11.9
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHHH
Q psy2823 17 SERDKAVLEMDKSKEELERSQATL 40 (122)
Q Consensus 17 ~E~eka~~e~ek~~eELErsQatl 40 (122)
.+.+++-..+-.++..+.+.+..|
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~ql 29 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEEQL 29 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555544
No 257
>PRK14155 heat shock protein GrpE; Provisional
Probab=29.48 E-value=1.3e+02 Score=24.30 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 48 ELDRLQEKYDKTCADLRRAQAELRVVQADNER 79 (122)
Q Consensus 48 EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~ 79 (122)
+.+.+..++++...++..+...+-+.++++++
T Consensus 14 ~~~~l~~~l~~le~e~~elkd~~lR~~AefeN 45 (208)
T PRK14155 14 EADDAAQEIEALKAEVAALKDQALRYAAEAEN 45 (208)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666555655555555555555555
No 258
>KOG3771|consensus
Probab=29.27 E-value=2.1e+02 Score=26.11 Aligned_cols=35 Identities=31% Similarity=0.341 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 45 TSAELDRLQEKYDKTCADLRRAQAELRVVQADNER 79 (122)
Q Consensus 45 tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~ 79 (122)
....+.++|.+-+|....+-|+.++++..|..+|-
T Consensus 141 ~r~~~~kvq~~k~kd~~k~~KAeeEl~~Aq~~fE~ 175 (460)
T KOG3771|consen 141 ARHSFEKLQAKKKKDEAKLAKAEEELEKAQQVFEE 175 (460)
T ss_pred HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHH
Confidence 33566777777777777777777777777777754
No 259
>KOG2264|consensus
Probab=29.05 E-value=2.7e+02 Score=26.88 Aligned_cols=51 Identities=14% Similarity=0.230 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHH
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGE 97 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e 97 (122)
-||-.++-|-.+..+|+.+.....+..+..+.+.+-++.+|.-..|.+|-.
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~ 143 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQ 143 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHH
Confidence 345555555555555555555555554455555444444444444444433
No 260
>smart00338 BRLZ basic region leucin zipper.
Probab=28.78 E-value=1.6e+02 Score=18.63 Aligned_cols=50 Identities=30% Similarity=0.444 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 70 LRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY 119 (122)
Q Consensus 70 le~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El 119 (122)
....+..+++-...+..|..++.....+...|..++.....+...|...+
T Consensus 14 R~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 14 REAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555666667777777777777777777777777777777776654
No 261
>KOG0971|consensus
Probab=28.71 E-value=6.4e+02 Score=25.70 Aligned_cols=18 Identities=33% Similarity=0.366 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhHHHHHh
Q psy2823 25 EMDKSKEELERSQATLAT 42 (122)
Q Consensus 25 e~ek~~eELErsQatl~~ 42 (122)
|++|.+-++|.+|---++
T Consensus 256 ElekmkiqleqlqEfkSk 273 (1243)
T KOG0971|consen 256 ELEKMKIQLEQLQEFKSK 273 (1243)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666666533333
No 262
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=28.68 E-value=4.9e+02 Score=24.29 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2823 47 AELDRLQEKYDKTCADLRRAQA 68 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ 68 (122)
+|+..++..-|...++|....+
T Consensus 223 qE~~~Lq~q~dq~~~~Lqqy~a 244 (617)
T PF15070_consen 223 QEAQSLQEQRDQYLGHLQQYVA 244 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777776666666543
No 263
>PRK15396 murein lipoprotein; Provisional
Probab=28.52 E-value=2e+02 Score=19.89 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2823 48 ELDRLQEKYDKTCADLRRAQ 67 (122)
Q Consensus 48 EldrlQekldk~~~Elrr~Q 67 (122)
+++.|..+.+++..+..-+.
T Consensus 33 qV~~L~~kvdql~~dv~~~~ 52 (78)
T PRK15396 33 DVQTLNAKVDQLSNDVNAMR 52 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444433333
No 264
>KOG0999|consensus
Probab=28.28 E-value=5.5e+02 Score=24.74 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=15.2
Q ss_pred HHhhHHHHHHHHHHHHhhHHHHHHHH
Q psy2823 91 VEKSQGEVYRLKAKLENTQGEMESMK 116 (122)
Q Consensus 91 lEksQ~e~~rlq~elE~aQ~e~e~l~ 116 (122)
.=..+.++.++..++.+.|++.++|-
T Consensus 109 I~eleneLKq~r~el~~~q~E~erl~ 134 (772)
T KOG0999|consen 109 ILELENELKQLRQELTNVQEENERLE 134 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666666554
No 265
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=28.22 E-value=3e+02 Score=21.65 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhh
Q psy2823 70 LRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENT 108 (122)
Q Consensus 70 le~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~a 108 (122)
+..+..++....-+.+-|..++++.+.+-..|..+.+.+
T Consensus 95 l~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 95 LKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444444433
No 266
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.87 E-value=1.1e+02 Score=21.83 Aligned_cols=29 Identities=10% Similarity=0.056 Sum_probs=15.9
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q psy2823 9 PGTLSRLLSERDKAVLEMDKSKEELERSQ 37 (122)
Q Consensus 9 Q~~~~rl~~E~eka~~e~ek~~eELErsQ 37 (122)
+.++..++.+.+++..+++.|+.++.+.+
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555555555555554
No 267
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=27.56 E-value=1.1e+02 Score=19.93 Aligned_cols=23 Identities=26% Similarity=0.122 Sum_probs=16.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHH
Q psy2823 16 LSERDKAVLEMDKSKEELERSQA 38 (122)
Q Consensus 16 ~~E~eka~~e~ek~~eELErsQa 38 (122)
..++.++.++|..|+.+|++.+.
T Consensus 28 ~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 28 RKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567788888888888887663
No 268
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.50 E-value=1.7e+02 Score=18.51 Aligned_cols=47 Identities=30% Similarity=0.409 Sum_probs=31.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 73 VQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY 119 (122)
Q Consensus 73 tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~El 119 (122)
....+.+-...+..|..++.....+...|..++.....+...|..+.
T Consensus 17 Ar~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 17 ARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555566666777777777777777777777777777766554
No 269
>PRK14143 heat shock protein GrpE; Provisional
Probab=27.35 E-value=2.2e+02 Score=23.43 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADNER 79 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~ 79 (122)
.++..+..+++....++..+...+-+.++++++
T Consensus 67 ~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN 99 (238)
T PRK14143 67 ARLAQLEQELESLKQELEELNSQYMRIAADFDN 99 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666555566666655
No 270
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.19 E-value=1.6e+02 Score=18.23 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=15.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHH
Q psy2823 87 MQEKVEKSQGEVYRLKAKLENTQGEMESMKEE 118 (122)
Q Consensus 87 lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~E 118 (122)
|...++..-.+..+|..+.++...++..++..
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444445555555555555554443
No 271
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=26.80 E-value=3.4e+02 Score=21.86 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2823 95 QGEVYRLKAKLENTQGEMESMKEEY 119 (122)
Q Consensus 95 Q~e~~rlq~elE~aQ~e~e~l~~El 119 (122)
+.++..|++.+.+.+..+.+|...|
T Consensus 160 ~~e~~aLqa~lkk~e~~~~SLe~~L 184 (207)
T PF05010_consen 160 QAELLALQASLKKEEMKVQSLEESL 184 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544443
No 272
>PRK14160 heat shock protein GrpE; Provisional
Probab=26.64 E-value=3.3e+02 Score=22.08 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADNER 79 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~ 79 (122)
.++..+..+++++..++..+.-.+-+.++++++
T Consensus 61 ~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN 93 (211)
T PRK14160 61 DENNKLKEENKKLENELEALKDRLLRTVAEYDN 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555554
No 273
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=26.40 E-value=2.8e+02 Score=20.76 Aligned_cols=42 Identities=24% Similarity=0.507 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQ 88 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ 88 (122)
.++..+...+......+.+...++..+..+.++.+..+..++
T Consensus 91 ~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~ 132 (177)
T PF13870_consen 91 EELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555544444433333
No 274
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=26.28 E-value=2.9e+02 Score=26.67 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 45 TSAELDRLQEKYDKTCADLRRAQAELRV 72 (122)
Q Consensus 45 tq~EldrlQekldk~~~Elrr~Q~ele~ 72 (122)
...|+.|++.+++++..++.+.+..|-+
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~N 954 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKISI 954 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456677777777777777666655543
No 275
>KOG2856|consensus
Probab=26.02 E-value=4.6e+02 Score=23.91 Aligned_cols=75 Identities=13% Similarity=0.209 Sum_probs=45.7
Q ss_pred CCCCchHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 5 LVPPPGTLSRLLSERDKAVLEMDKSKEELERSQATLAT-----LSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNER 79 (122)
Q Consensus 5 ~~~~Q~~~~rl~~E~eka~~e~ek~~eELErsQatl~~-----l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~ 79 (122)
+.-+|--|.++..+.+.+...-.-.-.+=--+.+...- .-+...+-++|++.+|+.-+++|++..-+.+=+++.+
T Consensus 130 FrKAQKPWaK~l~evE~ak~~yh~ack~EksA~~re~n~kaDsSvspeq~kKlqdrveK~k~evqktkekYektl~el~~ 209 (472)
T KOG2856|consen 130 FRKAQKPWAKLLKEVEAAKKAYHAACKEEKSALTREQNAKADSSVSPEQLKKLQDRVEKCKQEVQKTKEKYEKTLAELNK 209 (472)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455556666666665555443332221111111110 1244689999999999999999999998888887743
No 276
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=25.91 E-value=4.3e+02 Score=22.74 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 93 KSQGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 93 ksQ~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
.+..++..++.++..+...+...+..++
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555444443
No 277
>PRK14147 heat shock protein GrpE; Provisional
Probab=25.83 E-value=1.9e+02 Score=22.45 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 48 ELDRLQEKYDKTCADLRRAQAELRVVQADNER 79 (122)
Q Consensus 48 EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~ 79 (122)
+.+.+..+++....++..+...+-++++++++
T Consensus 19 ~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN 50 (172)
T PRK14147 19 ETDPLKAEVESLRSEIALVKADALRERADLEN 50 (172)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666555566666655
No 278
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=25.65 E-value=23 Score=32.49 Aligned_cols=9 Identities=78% Similarity=1.139 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q psy2823 12 LSRLLSERD 20 (122)
Q Consensus 12 ~~rl~~E~e 20 (122)
+.++..+++
T Consensus 181 l~~~~~e~d 189 (713)
T PF05622_consen 181 LSRLVAERD 189 (713)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 333334333
No 279
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=25.50 E-value=32 Score=29.66 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=0.0
Q ss_pred CCcCCCCchHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy2823 2 MDCLVPPPGTLSRLLSERDKAVLEMDKSKEELER 35 (122)
Q Consensus 2 ~~~~~~~Q~~~~rl~~E~eka~~e~ek~~eELEr 35 (122)
|||+.+.+..+.+|..+.+++..+..++..+||+
T Consensus 136 l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~ 169 (342)
T PF06632_consen 136 LDANSRLQAENEHLQKENERLESEANKLLKQLEK 169 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 280
>PRK14161 heat shock protein GrpE; Provisional
Probab=25.24 E-value=3.4e+02 Score=21.27 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 45 TSAELDRLQEKYDKTCADLRRAQAELRV 72 (122)
Q Consensus 45 tq~EldrlQekldk~~~Elrr~Q~ele~ 72 (122)
...+++.+.++++.....+.|++++.++
T Consensus 24 ~~~ei~~l~~e~~elkd~~lR~~AefeN 51 (178)
T PRK14161 24 ANPEITALKAEIEELKDKLIRTTAEIDN 51 (178)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544444
No 281
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=24.95 E-value=2.8e+02 Score=20.24 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=11.4
Q ss_pred HHHHHHHhhHHHHHHHHHHH
Q psy2823 86 TMQEKVEKSQGEVYRLKAKL 105 (122)
Q Consensus 86 ~lQ~elEksQ~e~~rlq~el 105 (122)
+..++|..++.+..+|...+
T Consensus 39 k~tkEL~~Ak~e~~~Lr~dl 58 (125)
T PF03245_consen 39 KYTKELADAKAEIDRLRADL 58 (125)
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 45555666666666655544
No 282
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=24.93 E-value=3.8e+02 Score=21.79 Aligned_cols=47 Identities=17% Similarity=0.252 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHH
Q psy2823 70 LRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMK 116 (122)
Q Consensus 70 le~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~ 116 (122)
.+.-+.-+..+..+++.|-+.++..+.++.+|+.+.+.+..-.+.++
T Consensus 113 AE~RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~ 159 (200)
T PF07412_consen 113 AEERRKALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQ 159 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556667777888888888888888888888888776655443
No 283
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=24.65 E-value=6e+02 Score=24.03 Aligned_cols=32 Identities=13% Similarity=0.394 Sum_probs=17.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHH
Q psy2823 87 MQEKVEKSQGEVYRLKAKLENTQGEMESMKEE 118 (122)
Q Consensus 87 lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~E 118 (122)
+..+.-....++.+|+.+|....+....+..+
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~ 574 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESE 574 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444466666666666655555555444
No 284
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=24.58 E-value=6.1e+02 Score=24.06 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=6.5
Q ss_pred HHHHhHHHHHHHHHHHH
Q psy2823 18 ERDKAVLEMDKSKEELE 34 (122)
Q Consensus 18 E~eka~~e~ek~~eELE 34 (122)
+.+++..+++..+.+++
T Consensus 512 ~~~~li~~L~~~~~~~e 528 (771)
T TIGR01069 512 EINVLIEKLSALEKELE 528 (771)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334433333333
No 285
>PRK14154 heat shock protein GrpE; Provisional
Probab=24.55 E-value=2.3e+02 Score=22.90 Aligned_cols=37 Identities=11% Similarity=0.188 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2823 45 TSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVR 81 (122)
Q Consensus 45 tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q 81 (122)
+..+++.+..+++.+..++..+...+-++++++++.+
T Consensus 50 ~~~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyR 86 (208)
T PRK14154 50 EFPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLR 86 (208)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888877888888887744
No 286
>KOG0964|consensus
Probab=24.48 E-value=7.7e+02 Score=25.21 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy2823 55 KYDKTCADLRRAQ 67 (122)
Q Consensus 55 kldk~~~Elrr~Q 67 (122)
++++.-+.+++..
T Consensus 700 ~i~q~~~~~qk~e 712 (1200)
T KOG0964|consen 700 KIDQLNNNMQKVE 712 (1200)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 287
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=24.38 E-value=5.1e+02 Score=23.10 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2823 47 AELDRLQEKYDKTCADLRRA 66 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~ 66 (122)
..++.+++++.....-.++-
T Consensus 301 ~~L~ele~RL~~l~~LkrKy 320 (563)
T TIGR00634 301 ERLNEIEERLAQIKRLKRKY 320 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35666666666555543333
No 288
>KOG0964|consensus
Probab=24.19 E-value=7.8e+02 Score=25.17 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=9.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHh
Q psy2823 15 LLSERDKAVLEMDKSKEELERS 36 (122)
Q Consensus 15 l~~E~eka~~e~ek~~eELErs 36 (122)
-.+++..++..++..+.+++.-
T Consensus 676 ~~~~~~~l~~~L~~~r~~i~~~ 697 (1200)
T KOG0964|consen 676 SRSELKELQESLDEVRNEIEDI 697 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 289
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=24.16 E-value=1.8e+02 Score=21.22 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQ 74 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ 74 (122)
.++..++++++.....+.++.++.++..
T Consensus 18 ~~l~~l~~~~~~l~~~~~r~~ae~en~~ 45 (165)
T PF01025_consen 18 EELEELEKEIEELKERLLRLQAEFENYR 45 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554444433
No 290
>PRK14158 heat shock protein GrpE; Provisional
Probab=23.85 E-value=2.8e+02 Score=22.12 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADNERV 80 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~ 80 (122)
.++..+.++++....++..+...+-+.++++++.
T Consensus 40 ~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~ 73 (194)
T PRK14158 40 DRIKELEEALAAKEAEAAANWDKYLRERADLENY 73 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777777777777763
No 291
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=23.61 E-value=4.7e+02 Score=22.40 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=10.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHhh
Q psy2823 100 RLKAKLENTQGEMESMKEEYER 121 (122)
Q Consensus 100 rlq~elE~aQ~e~e~l~~ElE~ 121 (122)
+|++.+.-.+.++..|+.|++|
T Consensus 225 eLq~r~~~l~~~L~~L~~e~~r 246 (289)
T COG4985 225 ELQKRLAQLQTELDALRAELER 246 (289)
T ss_pred HHHHHHHHHHHHHHHHhhhhhh
Confidence 3444444444555555555443
No 292
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=23.60 E-value=4e+02 Score=21.58 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHH
Q psy2823 62 DLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESM 115 (122)
Q Consensus 62 Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l 115 (122)
+++.+=+.+..-..|.|+.+..+..|+++--+=-.-+.+...+++.|+...+.+
T Consensus 105 ~I~~~I~KR~hKllDYD~~r~~~~kL~~k~~kDe~KL~kAe~el~~Ak~~ye~l 158 (211)
T cd07611 105 DIKNRIAKRSRKLVDYDSARHHLEALQTSKRKDEGRIAKAEEEFQKAQKVFEEF 158 (211)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666777777777776643222234455555555555544433
No 293
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.50 E-value=4.2e+02 Score=22.22 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy2823 47 AELDRLQEKYDKTCADLRRAQ 67 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q 67 (122)
.++..+|++..+.++|++.++
T Consensus 57 ~e~~s~Q~~~~~L~~ev~~~~ 77 (247)
T COG3879 57 KELRSLQKKVNTLAAEVEDLE 77 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 294
>KOG0994|consensus
Probab=23.40 E-value=9e+02 Score=25.57 Aligned_cols=110 Identities=15% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHHHH-------------------HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 12 LSRLLSERDKAVLEMDKSKEELERSQATL-------------------ATLSTSAELDRLQEKYDKTCADLRRAQAELRV 72 (122)
Q Consensus 12 ~~rl~~E~eka~~e~ek~~eELErsQatl-------------------~~l~tq~EldrlQekldk~~~Elrr~Q~ele~ 72 (122)
+..|+++..+|....+.++.-.|-....| ..-.++.-|+++|+...-+..-+.-+-..+..
T Consensus 1544 a~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~e 1623 (1758)
T KOG0994|consen 1544 AENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGE 1623 (1758)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy2823 73 VQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYER 121 (122)
Q Consensus 73 tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE~ 121 (122)
.-.-.+.++-...+.-.+...+...+.-.+..-.++...++.|+.-|++
T Consensus 1624 L~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~ 1672 (1758)
T KOG0994|consen 1624 LETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYEL 1672 (1758)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 295
>KOG3156|consensus
Probab=23.23 E-value=4.4e+02 Score=21.89 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhH-HHHHHHHHHHHhhHHHHHHHHHH
Q psy2823 83 EEKTMQEKVEKSQ-GEVYRLKAKLENTQGEMESMKEE 118 (122)
Q Consensus 83 e~~~lQ~elEksQ-~e~~rlq~elE~aQ~e~e~l~~E 118 (122)
++..+.+++..+. +++-.++.+.|+.-+++|+++.-
T Consensus 102 ~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~ 138 (220)
T KOG3156|consen 102 DFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSS 138 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544 56666666666666666666543
No 296
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=22.94 E-value=3e+02 Score=19.88 Aligned_cols=48 Identities=23% Similarity=0.482 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhH
Q psy2823 48 ELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQ 95 (122)
Q Consensus 48 EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~elEksQ 95 (122)
.+..+.+.+..+..++..+...+..+=.++.+.+.+++.|++.+....
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666667777777777776666666677777777777777766543
No 297
>PHA01750 hypothetical protein
Probab=22.71 E-value=2.4e+02 Score=19.67 Aligned_cols=35 Identities=17% Similarity=0.392 Sum_probs=24.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy2823 87 MQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYER 121 (122)
Q Consensus 87 lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE~ 121 (122)
.+.+|++.-.+++-+..+-+|.+.....++..+++
T Consensus 40 V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~dk 74 (75)
T PHA01750 40 VNSELDNLKTEIEELKIKQDELSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 34566666666777777777777777777776664
No 298
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=22.60 E-value=3.4e+02 Score=20.34 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=14.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHH
Q psy2823 87 MQEKVEKSQGEVYRLKAKLENTQGEMESMKEE 118 (122)
Q Consensus 87 lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~E 118 (122)
|.++.|.....+..|...-++.++.++.|+.+
T Consensus 75 L~er~E~Le~ri~tLekQe~~l~e~l~eLq~~ 106 (119)
T COG1382 75 LEERKETLELRIKTLEKQEEKLQERLEELQSE 106 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 299
>PRK14141 heat shock protein GrpE; Provisional
Probab=22.51 E-value=2.3e+02 Score=22.91 Aligned_cols=28 Identities=11% Similarity=0.081 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 52 LQEKYDKTCADLRRAQAELRVVQADNER 79 (122)
Q Consensus 52 lQekldk~~~Elrr~Q~ele~tQ~~~e~ 79 (122)
+..+++....++..+...+-+.++++++
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN 63 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMEN 63 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 300
>KOG4643|consensus
Probab=22.36 E-value=8.5e+02 Score=24.94 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy2823 15 LLSERDKAVLEMDKSKEELERSQATLATL-----STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQE 89 (122)
Q Consensus 15 l~~E~eka~~e~ek~~eELErsQatl~~l-----~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~~q~e~~~lQ~ 89 (122)
+..+..++..+.+-+.+.+-+.=-.++.+ ....|.+++++.-+.-+.-+.+- ..-...+++.-+...++-.
T Consensus 406 leke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq----~~e~e~~~q~ls~~~Q~~~ 481 (1195)
T KOG4643|consen 406 LEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQ----SLENEELDQLLSLQDQLEA 481 (1195)
T ss_pred HHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHhHHHHHHHHHHHHHHH
Q ss_pred HHHhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy2823 90 KVEKSQGEVYRLKAKLENTQGEMESMKEEYER 121 (122)
Q Consensus 90 elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE~ 121 (122)
..+.....+..+.+-|.++.-++.++....++
T Consensus 482 et~el~~~iknlnk~L~~r~~elsrl~a~~~e 513 (1195)
T KOG4643|consen 482 ETEELLNQIKNLNKSLNNRDLELSRLHALKNE 513 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 301
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=22.29 E-value=4.5e+02 Score=24.94 Aligned_cols=54 Identities=19% Similarity=0.251 Sum_probs=29.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhHHHHHhh----h-hhHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 15 LLSERDKAVLEMDKSKEELERSQATLATL----S-TSAELDRLQEKYDKTCADLRRAQA 68 (122)
Q Consensus 15 l~~E~eka~~e~ek~~eELErsQatl~~l----~-tq~EldrlQekldk~~~Elrr~Q~ 68 (122)
+.+|+.++..++++++.++++.+..|+.- + -..-++.-.+++.....++.+...
T Consensus 809 ~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~ 867 (874)
T PRK05729 809 VEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKE 867 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777777777777777666321 1 123344445555555555544443
No 302
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=22.13 E-value=5.3e+02 Score=22.42 Aligned_cols=107 Identities=21% Similarity=0.294 Sum_probs=52.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhHHHH
Q psy2823 14 RLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAE-------LRVVQADNERVRSEEKT 86 (122)
Q Consensus 14 rl~~E~eka~~e~ek~~eELErsQatl~~l~tq~EldrlQekldk~~~Elrr~Q~e-------le~tQ~~~e~~q~e~~~ 86 (122)
|-......+++.++||+.|-- |-+|...+...-|++-.-+.+.--++.--++-| .++...-++++.-++.-
T Consensus 15 ~aLqKIqelE~QldkLkKE~q--QrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~ 92 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQ--QRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQV 92 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhh
Confidence 344456677788888886544 333432222233333333333333333222222 22222333333333333
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHhhC
Q psy2823 87 MQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERS 122 (122)
Q Consensus 87 lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ElE~s 122 (122)
---.+--.-+.+...+..+++...++-+++.+||||
T Consensus 93 Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 93 KESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444666666777777777777777777764
No 303
>PRK14162 heat shock protein GrpE; Provisional
Probab=21.86 E-value=4.2e+02 Score=21.14 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 47 AELDRLQEKYDKTCADLRRAQAELRVVQADN 77 (122)
Q Consensus 47 ~EldrlQekldk~~~Elrr~Q~ele~tQ~~~ 77 (122)
.++..+..+++.....+.|++++.++.+.-.
T Consensus 46 ~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~ 76 (194)
T PRK14162 46 KEIADLKAKNKDLEDKYLRSQAEIQNMQNRY 76 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555544333
No 304
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=21.60 E-value=4.4e+02 Score=21.31 Aligned_cols=64 Identities=14% Similarity=0.242 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 11 TLSRLLSERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNE 78 (122)
Q Consensus 11 ~~~rl~~E~eka~~e~ek~~eELErsQatl~~l~tq~EldrlQekldk~~~Elrr~Q~ele~tQ~~~e 78 (122)
.|--+-..|-++.-.......+|.+-.+.++++....- .+|+..+..+++.++........+++
T Consensus 120 svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k----~dK~~~~~~ev~~~e~~~~~a~~~fe 183 (234)
T cd07664 120 AVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYANK----PDKLQQAKDEIKEWEAKVQQGERDFE 183 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc----hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555656666666666666655555422111 23444555566665555555444543
No 305
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=21.52 E-value=2.5e+02 Score=18.54 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=20.9
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHhHHHH
Q psy2823 9 PGTLSRLLSERDKAVLEMDKSKEELERSQATL 40 (122)
Q Consensus 9 Q~~~~rl~~E~eka~~e~ek~~eELErsQatl 40 (122)
+..+.+++.++......+..+..++.+..-++
T Consensus 4 ~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~ 35 (106)
T PF01920_consen 4 QNKFQELNQQLQQLEQQIQQLERQLRELELTL 35 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777666666666555
No 306
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=21.44 E-value=5.4e+02 Score=22.25 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=9.2
Q ss_pred HHHhHHHHHHHHHHHHHhHHH
Q psy2823 19 RDKAVLEMDKSKEELERSQAT 39 (122)
Q Consensus 19 ~eka~~e~ek~~eELErsQat 39 (122)
..++..|+.-++..|.-+|..
T Consensus 81 Nk~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 81 NKKLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhch
Confidence 334444444444444444433
No 307
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.31 E-value=4.6e+02 Score=21.48 Aligned_cols=46 Identities=20% Similarity=0.424 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHH
Q psy2823 70 LRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESM 115 (122)
Q Consensus 70 le~tQ~~~e~~q~e~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l 115 (122)
|-.+.+++||-+.-+..|-+++-+....+..|+.++++.+.+=-+|
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888999888888888888888888888888888887765554
No 308
>PRK14151 heat shock protein GrpE; Provisional
Probab=21.30 E-value=2.8e+02 Score=21.61 Aligned_cols=32 Identities=19% Similarity=0.128 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 48 ELDRLQEKYDKTCADLRRAQAELRVVQADNER 79 (122)
Q Consensus 48 EldrlQekldk~~~Elrr~Q~ele~tQ~~~e~ 79 (122)
....+.++++....++..+...+-+.++++++
T Consensus 21 ~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN 52 (176)
T PRK14151 21 AGDDLTARVQELEEQLAAAKDQSLRAAADLQN 52 (176)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555
No 309
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=20.87 E-value=5.4e+02 Score=22.06 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 94 SQGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 94 sQ~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
.+.++.+|+.+++.++.-.+.+...++
T Consensus 353 ~~~el~~L~Re~~~~~~~Y~~l~~r~e 379 (498)
T TIGR03007 353 VEAELTQLNRDYEVNKSNYEQLLTRRE 379 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666655555554
No 310
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=20.72 E-value=3.6e+02 Score=20.35 Aligned_cols=58 Identities=24% Similarity=0.264 Sum_probs=31.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2823 13 SRLLSERDKAVLEMDKSKEELERSQATLATLSTSAEL---DRLQEKYDKTCADLRRAQAELRVVQADN 77 (122)
Q Consensus 13 ~rl~~E~eka~~e~ek~~eELErsQatl~~l~tq~El---drlQekldk~~~Elrr~Q~ele~tQ~~~ 77 (122)
.....+..++..|..+++.|+... ++++|. -|++-++||...|+.++...+....+-+
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~i-------S~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~ 96 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAI-------SAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSF 96 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS--------TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcC-------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667777777666653 233322 2456667777777766665544433333
No 311
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=20.71 E-value=4.9e+02 Score=21.51 Aligned_cols=46 Identities=24% Similarity=0.308 Sum_probs=28.8
Q ss_pred HHHHHhhhHHHHHHHHHHh-------hHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2823 75 ADNERVRSEEKTMQEKVEK-------SQGEVYRLKAKLENTQGEMESMKEEYE 120 (122)
Q Consensus 75 ~~~e~~q~e~~~lQ~elEk-------sQ~e~~rlq~elE~aQ~e~e~l~~ElE 120 (122)
...++++-+.+.-+.++++ +...+..++..+......++.-+.+|.
T Consensus 134 k~Y~~acke~E~A~~k~~ka~~d~~~tk~~~eK~k~~~~~~~q~~e~aKn~Y~ 186 (252)
T cd07675 134 KKFERECREAEKAQQSYERLDNDTNATKSDVEKAKQQLNLRTHMADESKNEYA 186 (252)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666555 445566677777776667776666654
No 312
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=20.42 E-value=3.8e+02 Score=20.08 Aligned_cols=34 Identities=15% Similarity=0.364 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHH
Q psy2823 84 EKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKE 117 (122)
Q Consensus 84 ~~~lQ~elEksQ~e~~rlq~elE~aQ~e~e~l~~ 117 (122)
...++++....+..+.+...+.+..+.-+..|..
T Consensus 84 ~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ 117 (126)
T PF07889_consen 84 SKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEG 117 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555544444433
No 313
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=20.32 E-value=5e+02 Score=21.44 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=12.7
Q ss_pred HHhHHHHHHHHHHHHHhHHHH
Q psy2823 20 DKAVLEMDKSKEELERSQATL 40 (122)
Q Consensus 20 eka~~e~ek~~eELErsQatl 40 (122)
+=+..++.+++.+|..++..+
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l 193 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAEL 193 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666555
No 314
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=20.13 E-value=3.9e+02 Score=20.14 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=17.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhHHHH
Q psy2823 85 KTMQEKVEKSQGEVYRLKAKLENTQGEM 112 (122)
Q Consensus 85 ~~lQ~elEksQ~e~~rlq~elE~aQ~e~ 112 (122)
.+++-++++...++..+...+.....-.
T Consensus 69 aKl~Rk~~kl~~el~~~~~~~~~~~~~~ 96 (161)
T PF04420_consen 69 AKLNRKLDKLEEELEKLNKSLSSEKSSF 96 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777776666554433
Done!