RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2823
         (122 letters)



>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
           (residues 410-1202) {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 760

 Score = 27.5 bits (60), Expect = 0.46
 Identities = 7/41 (17%), Positives = 15/41 (36%)

Query: 18  ERDKAVLEMDKSKEELERSQATLATLSTSAELDRLQEKYDK 58
              K + +  + + ELE      A    + +L   +  Y +
Sbjct: 710 RYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQE 750


>d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId:
          562]}
          Length = 477

 Score = 26.8 bits (59), Expect = 0.83
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 43 LSTSAELDRLQEKYDKTCADLRRA-QAELRVVQADNERVR 81
          L+ +  LD+L   Y+++   LR A    +   +  +E  R
Sbjct: 1  LTPAQALDKLDALYEQSVVALRNAIGNYITSGELPDENAR 40


>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella
           pneumoniae [TaxId: 573]}
          Length = 255

 Score = 25.5 bits (55), Expect = 2.1
 Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 5/55 (9%)

Query: 49  LDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEE--KTMQEKVEKSQGEVYRL 101
            D          +++ +A      V+ D   V   +      E+  K+ G    +
Sbjct: 31  ADYNDATAKAVASEINQAGGHAVAVKVD---VSDRDQVFAAVEQARKTLGGFDVI 82


>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein
          reductase {Streptomyces coelicolor [TaxId: 1902]}
          Length = 257

 Score = 25.1 bits (54), Expect = 2.8
 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 5/51 (9%)

Query: 50 DRLQEKYDKTCADLRRAQAELRVVQADNERVRSEE--KTMQEKVEKSQGEV 98
           R +E    T  +LR A  E      D   VRS    + +   V +  G V
Sbjct: 33 ARGEEGLRTTLKELREAGVEADGRTCD---VRSVPEIEALVAAVVERYGPV 80


>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter
          oxydans [TaxId: 442]}
          Length = 260

 Score = 24.4 bits (52), Expect = 4.1
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 49 LDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEE--KTMQEKVEKSQGEV 98
          LD  +E  +K  A +R    E R    D   V SEE      + V +  G++
Sbjct: 35 LDMNREALEKAEASVREKGVEARSYVCD---VTSEEAVIGTVDSVVRDFGKI 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.306    0.122    0.310 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 377,448
Number of extensions: 13995
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 21
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 47 (22.1 bits)