BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2824
(242 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2KIH4|RRS1_BOVIN Ribosome biogenesis regulatory protein homolog OS=Bos taurus
GN=RRS1 PE=2 SV=1
Length = 365
Score = 201 bits (511), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/245 (46%), Positives = 158/245 (64%), Gaps = 4/245 (1%)
Query: 1 MTTDLVDHVLQEVAR-RNEQFKPTTVNKLIELEIDPGTLLAFDKND-INLGELRQDKDKY 58
M V+ +L + R E+ + TV K +ELE D G LLA D+N L ++
Sbjct: 1 MEGQSVEELLAKAERDEAEKLQRITVLKELELEFDLGNLLASDRNPPTGLRHAGPTQEAE 60
Query: 59 LKDLTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALE 117
L+ L RDNTQLLIN++W+LPTER +E +VA LP+P+ LPREKP+P+ +T+W++FA
Sbjct: 61 LRALARDNTQLLINQLWQLPTERVEEALVARLPEPSTRLPREKPVPRPRPLTRWQQFARL 120
Query: 118 KGIRKTKKVKKKWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQK 177
KGIR KK WD++ W +G++R + K +W++ VP NADPMEDQFAK+ A+K
Sbjct: 121 KGIRPKKKTNLVWDEVSGRWRRRWGYQRARDDTK-EWLIEVPGNADPMEDQFAKRIQAKK 179
Query: 178 ERVARNEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSL 237
ERVA+NE RLRN+AR++K ++PS M S +L A VA VSTAS+G++Q L
Sbjct: 180 ERVAKNELNRLRNLARAHKMQLPSAAGMHPTGHQSKEELGRAMQVAKVSTASVGRFQERL 239
Query: 238 PLEKS 242
P EK+
Sbjct: 240 PKEKA 244
>sp|Q9CYH6|RRS1_MOUSE Ribosome biogenesis regulatory protein homolog OS=Mus musculus
GN=Rrs1 PE=2 SV=1
Length = 365
Score = 201 bits (510), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 115/243 (47%), Positives = 159/243 (65%), Gaps = 10/243 (4%)
Query: 4 DLVDHVLQEVARRNEQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQ---DKDKYLK 60
+L+ QE A E+ + TV+K +ELE D G LLA D+N + LRQ + L+
Sbjct: 8 ELLAKAEQEEA---EKLQRITVHKELELEFDLGNLLASDRNPPTV--LRQAGPSPEAELR 62
Query: 61 DLTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEKG 119
L RDNTQLLIN++W LPTER +E +VA LP+P LPREKPLP+ +T+W++FA KG
Sbjct: 63 ALARDNTQLLINQLWRLPTERVEEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKG 122
Query: 120 IRKTKKVKKKWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKER 179
IR KK WD+ +W +G+KR + K +W++ VP +ADPMEDQFAK++ A+KER
Sbjct: 123 IRPKKKTNLVWDEASGQWRRRWGYKRARDDTK-EWLIEVPGSADPMEDQFAKRTQAKKER 181
Query: 180 VARNEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPL 239
VA+NE RLRN+AR++K ++PS + S +L A VA VSTAS+G++Q LP
Sbjct: 182 VAKNELNRLRNLARAHKMQMPSSAGLHPTGHQSKEELGRAMQVAKVSTASVGRFQERLPK 241
Query: 240 EKS 242
EK+
Sbjct: 242 EKA 244
>sp|A1A5P2|RRS1_RAT Ribosome biogenesis regulatory protein homolog OS=Rattus norvegicus
GN=Rrs1 PE=2 SV=1
Length = 365
Score = 200 bits (509), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 160/243 (65%), Gaps = 10/243 (4%)
Query: 4 DLVDHVLQEVARRNEQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQ---DKDKYLK 60
+L+ QE A E+ + TV+K +ELE D G LLA D+N + LRQ + L+
Sbjct: 8 ELLAKAKQEEA---EKLQRITVHKELELEFDLGNLLASDRNPPTV--LRQAGPSPEAELR 62
Query: 61 DLTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEKG 119
L RDNTQLL+N++W+LPTER +E +VA LP+P LPREKPLP+ +T+W++FA KG
Sbjct: 63 ALARDNTQLLVNQLWQLPTERVEEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKG 122
Query: 120 IRKTKKVKKKWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKER 179
IR KK WD++ +W +G+KR + K +W++ VP +ADPMEDQFAK+ A+KER
Sbjct: 123 IRPKKKTNLVWDEVSGQWRRRWGYKRARDDTK-EWLIEVPGSADPMEDQFAKRIRAKKER 181
Query: 180 VARNEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPL 239
VA+NE RLRN+AR++K ++PS + S +L A VA VSTAS+G++Q LP
Sbjct: 182 VAKNELNRLRNLARAHKMQMPSSAGLHPTGHQSKEELGRAMQVAKVSTASVGRFQERLPK 241
Query: 240 EKS 242
EK+
Sbjct: 242 EKA 244
>sp|Q15050|RRS1_HUMAN Ribosome biogenesis regulatory protein homolog OS=Homo sapiens
GN=RRS1 PE=1 SV=2
Length = 365
Score = 199 bits (505), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/226 (48%), Positives = 151/226 (66%), Gaps = 3/226 (1%)
Query: 18 EQFKPTTVNKLIELEIDPGTLLAFDKND-INLGELRQDKDKYLKDLTRDNTQLLINKIWE 76
E+ + TV+K +EL+ D G LLA D+N L + L+ L RDNTQLLIN++W+
Sbjct: 19 EKLQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAELQALARDNTQLLINQLWQ 78
Query: 77 LPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEKGIRKTKKVKKKWDDILK 135
LPTER +E IVA LP+PT LPREKPLP+ +T+W++FA KGIR KK WD++
Sbjct: 79 LPTERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSG 138
Query: 136 EWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVARNEYQRLRNIARSN 195
+W +G++R + K +W++ VP NADP+EDQFAK+ A+KERVA+NE RLRN+AR++
Sbjct: 139 QWRRRWGYQRARDDTK-EWLIEVPGNADPLEDQFAKRIQAKKERVAKNELNRLRNLARAH 197
Query: 196 KTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEK 241
K ++PS + S +L A VA VSTAS+G++Q LP EK
Sbjct: 198 KMQLPSAAGLHPTGHQSKEELGRAMQVAKVSTASVGRFQERLPKEK 243
>sp|Q9XVT0|RRS1_CAEEL Ribosome biogenesis regulatory protein homolog OS=Caenorhabditis
elegans GN=rrbs-1 PE=3 SV=1
Length = 333
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/231 (45%), Positives = 140/231 (60%), Gaps = 15/231 (6%)
Query: 21 KPTTVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLTRDNTQLLINKIWELPTE 80
K T V K I+ ID G LL D+ I + D + L++ R NTQLL N IW+L +
Sbjct: 4 KSTEVEKAIDPIIDLGNLLFIDREPI-----QGDASEGLEERARKNTQLLFNNIWQLEQK 58
Query: 81 RRDEDIVATLPDPTYILPREKPLP-KITMTKWEEFALEKGIRKTKKVKKKWDDILKEWVP 139
R +E I+ TLP TY LPREK LP K TKWE++A EKGI K KK KK +D+ KEW P
Sbjct: 59 RVEEAIIVTLPPATYRLPREKRLPEKKEPTKWEKYAAEKGIEKRKKDKKVFDEATKEWKP 118
Query: 140 TYGFKRRLAEKKHQWMLPVPANA-DPMEDQFAKKSAAQKERVARNEYQRLRNIARSNKTK 198
TYG+ RR + W++ +P NA DP +D FA++ +KERVA+N+ QR++N+AR KT
Sbjct: 119 TYGY-RRGNDDTKDWLIEIPDNAEDPNKDFFAERREKKKERVAKNDMQRMKNLARQMKTT 177
Query: 199 VPS-------VGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEKS 242
V S +GV S +Q+R A D A ++TAS GK+Q L EK+
Sbjct: 178 VKSGPSTEKMIGVGVDAKEKSKQQVRFAVDRAKLATASAGKFQEGLKGEKA 228
>sp|A8WY26|RRS1_CAEBR Ribosome biogenesis regulatory protein homolog OS=Caenorhabditis
briggsae GN=rrbs-1 PE=3 SV=1
Length = 329
Score = 164 bits (416), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 141/231 (61%), Gaps = 15/231 (6%)
Query: 21 KPTTVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLTRDNTQLLINKIWELPTE 80
K T V K I+ ID G LL D+ L+ D ++ L++ R NTQLL N IW+L +
Sbjct: 4 KSTEVEKAIDPIIDLGNLLFIDREP-----LQGDAEEGLEERARKNTQLLFNNIWQLEQK 58
Query: 81 RRDEDIVATLPDPTYILPREKPLP-KITMTKWEEFALEKGIRKTKKVKKKWDDILKEWVP 139
R +E I+ TLP TY LPREK LP K TKWE++A EKGI K KK KK +D+ KEW P
Sbjct: 59 RVEEAIIVTLPAATYRLPREKKLPEKKEPTKWEKYAKEKGIEKRKKDKKVFDEATKEWKP 118
Query: 140 TYGFKRRLAEKKHQWMLPVPANA-DPMEDQFAKKSAAQKERVARNEYQRLRNIARSNKTK 198
TYG+ RR + W++ +P NA DP +D FA++ +KERVA+NE QR++N+AR KT
Sbjct: 119 TYGY-RRGNDNTKDWLIEIPDNAEDPNKDFFAERREKKKERVAKNEMQRMKNLARQMKTT 177
Query: 199 V---PS----VGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEKS 242
V PS +GV S + +R A D A ++TAS GK+Q L EK+
Sbjct: 178 VKTGPSTDKMIGVGIDAKDKSKQDVRFAVDRAKLATASAGKFQEGLKGEKA 228
>sp|Q08746|RRS1_YEAST Regulator of ribosome biosynthesis OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRS1 PE=1 SV=1
Length = 203
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 103/192 (53%), Gaps = 24/192 (12%)
Query: 22 PTTVNKLIELEIDPGTLLAFD-----KNDINLGELRQDKDKYLKDLTRDNTQLLINKIWE 76
P TV K I + D G L AFD KND++ R +++ +K LTRDN QLLIN++
Sbjct: 10 PVTVEKPIPVVYDLGNLAAFDSNVLDKNDLDSSNAR--REEKIKSLTRDNVQLLINQLLS 67
Query: 77 LPTERRDEDIVAT-----------LPDPTYILPREKPLPKI-TMTKWEEFALEKGIR-KT 123
LP + E + T LPDPT LPREKPLPK MTKWE+FA +KGI+ K
Sbjct: 68 LPMKTTTESVGGTGGQSSVMTLLQLPDPTTDLPREKPLPKAKAMTKWEKFAAKKGIKPKE 127
Query: 124 KKVKKKWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAK----KSAAQKER 179
+ K +D+ EWVP +G+K + QW++ V +++ A +K
Sbjct: 128 RAGKMIYDEASGEWVPKWGYKGANKKLDDQWLVEVDDKVKGTDNELIDPRTLNRAERKRL 187
Query: 180 VARNEYQRLRNI 191
V +NE Q+ RN+
Sbjct: 188 VKKNEKQQRRNM 199
>sp|Q9SH88|RRS1_ARATH Ribosome biogenesis regulatory protein homolog OS=Arabidopsis
thaliana GN=At2g37990 PE=2 SV=2
Length = 318
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 116/226 (51%), Gaps = 18/226 (7%)
Query: 32 EIDPGTLLAFDKNDINLGELRQDKDKYLKDLTRDNTQL---LINKIWELPTERRDEDIVA 88
++D G LLAF+ N + + +K++ + T+L + NK++ P+ ++ +
Sbjct: 12 QVDVGNLLAFNPNH-RFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTETNDGPIV 70
Query: 89 TLPDPTYILPREKPLPKITM-TKWEEFALEKGIRKTKKVKKKWDDILKEWVPTYGFKRRL 147
LP PT LPREK +P+ TKWEEFAL+KGI+K KK K WD+ ++ +G+ R+
Sbjct: 71 QLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRRHGYD-RV 129
Query: 148 AEKKHQWMLPVPANADPMEDQFAKKSAAQKERVARNEYQRLRNIARSNK----------- 196
+ ++ + +P D FAK+ +K+RV + E RL+N+ + K
Sbjct: 130 NDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALPSHVQLA 189
Query: 197 -TKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEK 241
T +P G + +L + A +A STAS GK+ LP EK
Sbjct: 190 ATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEK 235
>sp|Q869Q2|RRS1_DICDI Ribosome biogenesis regulatory protein homolog OS=Dictyostelium
discoideum GN=rrs1 PE=3 SV=1
Length = 317
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 120/217 (55%), Gaps = 8/217 (3%)
Query: 31 LEIDPGTLLAFDKNDINLGELRQDKDKYLKDLTRDNTQLLINKIWELPTERRDEDIVATL 90
L D G L AFD + +N E + + ++Y+ L+RDN QLLI+++++LP + +E +A L
Sbjct: 27 LLYDLGNLTAFDHSSLNKTEYKSNPNEYINKLSRDNVQLLISRLFQLPIKEIEEGSLALL 86
Query: 91 PDPTYILPREKPLPKIT-MTKWEEFALEKGIRKTKKVKKKWDDILKEWVPTYGFKRRLAE 149
P T +PRE+ LP T+WE FA KGI+K KK +WD +E+ PT+G+K + +
Sbjct: 87 PRCTTPIPRERSLPTSKPKTRWEAFAEIKGIKKKKKSSMEWDKEHEEYRPTFGYK-KAND 145
Query: 150 KKHQWMLPVPANADPMEDQFAKKSAAQKERVARNEYQRLRNIARSNKTKVPSVGVM---- 205
+ W + + ED F K + +RV++ + + RN ++ ++ +VG
Sbjct: 146 VANDWAMLARPDDKVGEDPFKKLEDEKNDRVSKQKKREQRNFDEASMRQMSNVGKTLSFD 205
Query: 206 -PHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEK 241
H + S + + DVA +STAS+GK+ + EK
Sbjct: 206 KEHRGQIKS-DMEKVFDVAKLSTASLGKFDKRVENEK 241
>sp|O59678|RRS1_SCHPO Ribosome biogenesis regulatory protein homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A3.16 PE=1 SV=1
Length = 166
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 79/131 (60%), Gaps = 3/131 (2%)
Query: 29 IELEIDPGTLLAFDKNDINLGELR-QDKDKYLKDLTRDNTQLLINKIWELPTERRDEDIV 87
I L+ D G + AFD + ++ +L +K+ +L L+RDN Q L+NK+ LP ER + ++
Sbjct: 9 IPLDFDLGNMAAFDISPLDETKLSGSEKESFLFSLSRDNVQQLVNKMISLPKERTSDGVL 68
Query: 88 ATLPDPTYILPREKPLPKIT-MTKWEEFALEKGIR-KTKKVKKKWDDILKEWVPTYGFKR 145
LP+ LPR KPLPK TKW+ FA KGI K ++ + +D+ EWVP +G+K
Sbjct: 69 LQLPETVTPLPRAKPLPKPKPETKWQRFARIKGIAPKKREGRLVFDEASGEWVPKWGYKG 128
Query: 146 RLAEKKHQWML 156
+ E + QW++
Sbjct: 129 KNKELETQWLV 139
>sp|Q9UPA5|BSN_HUMAN Protein bassoon OS=Homo sapiens GN=BSN PE=2 SV=4
Length = 3926
Score = 34.3 bits (77), Expect = 0.87, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 179 RVARNEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLP 238
R R + + LR R ++K P + P E + +LR+AA++ + +S +Y PS
Sbjct: 1072 RKTRRDKEELRAQRRRERSKTPPSNLSPIEDASPTEELRQAAEMEELHRSSCSEYSPSPS 1131
Query: 239 LE 240
L+
Sbjct: 1132 LD 1133
>sp|O88778|BSN_RAT Protein bassoon OS=Rattus norvegicus GN=Bsn PE=1 SV=3
Length = 3938
Score = 33.9 bits (76), Expect = 0.93, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 179 RVARNEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLP 238
R R + + LR R ++K P + P E + +LR+AA++ + +S +Y PS
Sbjct: 1067 RKTRRDKEELRAQRRRERSKTPPSNLSPIEDASPTEELRQAAEMEELHRSSCSEYSPSPS 1126
Query: 239 LE 240
L+
Sbjct: 1127 LD 1128
>sp|O88737|BSN_MOUSE Protein bassoon OS=Mus musculus GN=Bsn PE=1 SV=4
Length = 3942
Score = 33.9 bits (76), Expect = 0.93, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 179 RVARNEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLP 238
R R + + LR R ++K P + P E + +LR+AA++ + +S +Y PS
Sbjct: 1082 RKTRRDKEELRAQRRRERSKTPPSNLSPIEDASPTEELRQAAEMEELHRSSCSEYSPSPS 1141
Query: 239 LE 240
L+
Sbjct: 1142 LD 1143
>sp|Q1RMM1|ZC3HF_BOVIN Zinc finger CCCH domain-containing protein 15 OS=Bos taurus
GN=ZC3H15 PE=2 SV=1
Length = 426
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 57/153 (37%), Gaps = 37/153 (24%)
Query: 17 NEQFKPTTVNKLIELEIDPGTLLA--FDKNDINLGELRQDKDKYLKDLTRDNTQLLINKI 74
NE FKP + I DP +++ F + G DK K+ DLT
Sbjct: 82 NELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKG----DKCKFSHDLT----------- 126
Query: 75 WELPTERRDEDIVATLPDPTYILPREKPLPKITMTKWEEFALEKGIRK----TKKVKKKW 130
E E+R YI R++ L K TM W+E LE+ + K +K K K
Sbjct: 127 LERKCEKR----------SVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKT 176
Query: 131 DDILKEWVPTYGFKRRLAEKKHQWMLPVPANAD 163
+ K ++ + K+ W P D
Sbjct: 177 QIVCKHFLEA------IENNKYGWFWVCPGGGD 203
>sp|Q8WU90|ZC3HF_HUMAN Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens
GN=ZC3H15 PE=1 SV=1
Length = 426
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 57/153 (37%), Gaps = 37/153 (24%)
Query: 17 NEQFKPTTVNKLIELEIDPGTLLA--FDKNDINLGELRQDKDKYLKDLTRDNTQLLINKI 74
NE FKP + I DP +++ F + G DK K+ DLT
Sbjct: 82 NELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKG----DKCKFSHDLT----------- 126
Query: 75 WELPTERRDEDIVATLPDPTYILPREKPLPKITMTKWEEFALEKGIRK----TKKVKKKW 130
E E+R YI R++ L K TM W+E LE+ + K +K K K
Sbjct: 127 LERKCEKR----------SVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKT 176
Query: 131 DDILKEWVPTYGFKRRLAEKKHQWMLPVPANAD 163
+ K ++ + K+ W P D
Sbjct: 177 QIVCKHFLEA------IENNKYGWFWVCPGGGD 203
>sp|Q6U6G5|ZC3HF_RAT Zinc finger CCCH domain-containing protein 15 OS=Rattus norvegicus
GN=Zc3h15 PE=2 SV=1
Length = 426
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 56/151 (37%), Gaps = 33/151 (21%)
Query: 17 NEQFKPTTVNKLIELEIDPGTLLA--FDKNDINLGELRQDKDKYLKDLTRDNTQLLINKI 74
NE FKP + I DP +++ F + G DK K+ DLT
Sbjct: 82 NELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKG----DKCKFSHDLT----------- 126
Query: 75 WELPTERRDEDIVATLPDPTYILPREKPLPKITMTKWEEFALEKGIRK--TKKVKKKWDD 132
E E+R YI R++ L K TM W+E LE+ + K + KKK
Sbjct: 127 LERKCEKR----------SVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKK--- 173
Query: 133 ILKEWVPTYGFKRRLAEKKHQWMLPVPANAD 163
K + F + K+ W P D
Sbjct: 174 -PKTQIVCRHFLEAIENNKYGWFWVCPGGGD 203
>sp|Q3TIV5|ZC3HF_MOUSE Zinc finger CCCH domain-containing protein 15 OS=Mus musculus
GN=Zc3h15 PE=1 SV=2
Length = 426
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 56/151 (37%), Gaps = 33/151 (21%)
Query: 17 NEQFKPTTVNKLIELEIDPGTLLA--FDKNDINLGELRQDKDKYLKDLTRDNTQLLINKI 74
NE FKP + I DP +++ F + G DK K+ DLT
Sbjct: 82 NELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKG----DKCKFSHDLT----------- 126
Query: 75 WELPTERRDEDIVATLPDPTYILPREKPLPKITMTKWEEFALEKGIRK--TKKVKKKWDD 132
E E+R YI R++ L K TM W+E LE+ + K + KKK
Sbjct: 127 LERKCEKR----------SVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKK--- 173
Query: 133 ILKEWVPTYGFKRRLAEKKHQWMLPVPANAD 163
K + F + K+ W P D
Sbjct: 174 -PKTQIVCRHFLEAIENNKYGWFWVCPGGGD 203
>sp|Q6DD06|ZC3HF_XENLA Zinc finger CCCH domain-containing protein 15 OS=Xenopus laevis
GN=zc3h15 PE=2 SV=1
Length = 426
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 37/158 (23%)
Query: 12 EVARRNEQFKPTTVNKLIELEIDPGTLLA--FDKNDINLGELRQDKDKYLKDLTRDNTQL 69
E+ N+ FKP V + + DP +++ F + G DK K+ DL+
Sbjct: 78 ELQELNDLFKPVVVAQKVSKGADPKSVVCAFFKQGQCTKG----DKCKFSHDLS------ 127
Query: 70 LINKIWELPTERRDEDIVATLPDPTYILPREKPLPKITMTKWEEFALEKGIRK----TKK 125
E E+R Y+ R+ L K TM W+E LE+ + K +K
Sbjct: 128 -----LERKCEKR----------SVYVDGRDDELEKDTMENWDEKKLEEVVNKKHGEAEK 172
Query: 126 VKKKWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANAD 163
+K K + K ++ + K+ W P D
Sbjct: 173 IKAKTQIVCKFFLEA------IENNKYGWFWVCPGGGD 204
>sp|Q2RK59|SYI_MOOTA Isoleucine--tRNA ligase OS=Moorella thermoacetica (strain ATCC
39073) GN=ileS PE=3 SV=1
Length = 930
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 115 ALEKGIRKTKKVKKKWDDILKEWVPTYGFKRRLAEKKH----------------QWMLPV 158
+L GI ++++ D+L+ WV + ++R +A ++ +++L
Sbjct: 600 SLGNGIDPADVIRQRGADVLRLWVASADYRRDVAASENIMRQITEAYRKIRNTCRFLLAN 659
Query: 159 PANADPMEDQFAKKSAAQKERVARNEYQRLRNIAR 193
A+ DP +DQ ++ + +R A N QRL IAR
Sbjct: 660 LADFDPGKDQVPREEMLELDRWAMNRLQRL--IAR 692
>sp|Q8AZL8|RDRP_BSNV RNA-directed RNA polymerase OS=Blotched snakehead virus GN=VP1 PE=3
SV=1
Length = 867
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 147 LAEKKHQWMLPVPAN--ADPMEDQFAKKSAAQKERVARNEYQRLRNIARSNKTKVPSVGV 204
++++ W+LP P N DP+ K S E + RN+Y+ L+ A T + + +
Sbjct: 23 VSDRTQDWLLPEPWNPPMDPI-----KNSQEAAEYLQRNQYRMLKPRAIPENTPLDTSEL 77
Query: 205 MPH-ESVLSSRQLREAADVAVVSTASIGKYQPS 236
PH + S + V ST I +Y P+
Sbjct: 78 FPHLAEFVGSGAFGTSTLVPAGSTEYIPRYYPT 110
>sp|O54863|TSSK2_MOUSE Testis-specific serine/threonine-protein kinase 2 OS=Mus musculus
GN=Tssk2 PE=1 SV=2
Length = 358
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 146 RLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVARNEYQR 187
+LA K Q ML P N D MED+ A+ S A+ ++ E ++
Sbjct: 314 KLATKPQQRMLVTPENEDRMEDRLAETSRAKDHHISGAEVEK 355
>sp|A8NMB4|ARO1_COPC7 Pentafunctional AROM polypeptide OS=Coprinopsis cinerea (strain
Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
GN=CC1G_09809 PE=3 SV=2
Length = 1677
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 84 EDIVATLPDPTYILPREKPLPKITMTKWEEFALEKGIRKT 123
+ ++ TLP TY+L + + K+ + K+EE A KGI K+
Sbjct: 34 QTVLTTLPSSTYVLITDDNIAKLHLNKFEE-AFAKGIEKS 72
>sp|Q5H7N8|ZC3HF_CHICK Zinc finger CCCH domain-containing protein 15 OS=Gallus gallus
GN=ZC3H15 PE=1 SV=1
Length = 429
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 57/153 (37%), Gaps = 37/153 (24%)
Query: 17 NEQFKPTTVNKLIELEIDPGTLLA--FDKNDINLGELRQDKDKYLKDLTRDNTQLLINKI 74
NE FKP + I DP +++ F + G DK K+ DL+
Sbjct: 83 NELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKG----DKCKFSHDLS----------- 127
Query: 75 WELPTERRDEDIVATLPDPTYILPREKPLPKITMTKWEEFALEKGIRK----TKKVKKKW 130
E E+R YI R++ L K TM W+E LE+ + K +K K K
Sbjct: 128 LERKCEKR----------SVYIDARDEDLEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKT 177
Query: 131 DDILKEWVPTYGFKRRLAEKKHQWMLPVPANAD 163
+ K ++ + K+ W P D
Sbjct: 178 QIVCKYFLDA------IENNKYGWFWVCPGGGD 204
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,210,179
Number of Sequences: 539616
Number of extensions: 3969231
Number of successful extensions: 9693
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 9629
Number of HSP's gapped (non-prelim): 52
length of query: 242
length of database: 191,569,459
effective HSP length: 114
effective length of query: 128
effective length of database: 130,053,235
effective search space: 16646814080
effective search space used: 16646814080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)