Query psy2824
Match_columns 242
No_of_seqs 115 out of 251
Neff 4.7
Searched_HMMs 13730
Date Fri Aug 16 17:52:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2824.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2824hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1evha_ b.55.1.4 (A:) Enabled 40.5 3.5 0.00025 29.7 0.6 17 128-144 13-29 (111)
2 d1egxa_ b.55.1.4 (A:) Vasodila 36.7 4.7 0.00034 29.2 0.8 14 128-141 14-27 (115)
3 d1xoda1 b.55.1.4 (A:10-123) Sp 31.9 5.9 0.00043 29.4 0.6 16 127-142 9-24 (114)
4 d1g0sa_ d.113.1.1 (A:) ADP-rib 23.9 23 0.0016 27.8 2.9 48 128-178 63-115 (209)
5 d1v43a2 b.40.6.3 (A:304-373) H 13.2 24 0.0017 22.4 0.5 24 22-45 42-65 (70)
6 d1fmta2 c.65.1.1 (A:1-206) Met 12.7 40 0.0029 25.6 1.8 30 19-49 132-161 (206)
7 d1rkua_ c.108.1.11 (A:) Homose 12.1 39 0.0029 23.7 1.5 13 110-122 17-29 (206)
8 d1w85i_ a.9.1.1 (I:) E3/E1 bin 9.3 1.5E+02 0.011 17.5 3.4 31 189-220 9-40 (42)
9 d1i2ha_ b.55.1.4 (A:) Homer {R 7.9 47 0.0034 25.2 0.5 14 127-140 15-29 (145)
10 d2blna2 c.65.1.1 (A:1-203) Pol 7.8 63 0.0046 24.6 1.2 58 18-76 125-182 (203)
No 1
>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]}
Probab=40.47 E-value=3.5 Score=29.70 Aligned_cols=17 Identities=41% Similarity=0.720 Sum_probs=14.4
Q ss_pred cccccccCceecccccc
Q psy2824 128 KKWDDILKEWVPTYGFK 144 (242)
Q Consensus 128 ~v~DE~~~eW~prwGyk 144 (242)
|.||+.+++|+||.|=.
T Consensus 13 ~~~d~~~~~Wk~rG~g~ 29 (111)
T d1evha_ 13 MVYDDANKKWVPAGGST 29 (111)
T ss_dssp EEEETTTTEEEEGGGCC
T ss_pred EEEeCCCCcccccCCCc
Confidence 57999999999998543
No 2
>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.66 E-value=4.7 Score=29.16 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=12.8
Q ss_pred cccccccCceeccc
Q psy2824 128 KKWDDILKEWVPTY 141 (242)
Q Consensus 128 ~v~DE~~~eW~prw 141 (242)
|.||+.+++|+||=
T Consensus 14 ~~~d~~tk~WkerG 27 (115)
T d1egxa_ 14 MLYDDGNKRWLPAG 27 (115)
T ss_dssp BEECTTTSSCCBSS
T ss_pred EEEeCCCCcceeCC
Confidence 67999999999986
No 3
>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1 domain-containing protein 1, Spred-1 {Western clawed frog (Xenopus tropicalis) [TaxId: 8364]}
Probab=31.85 E-value=5.9 Score=29.37 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=13.6
Q ss_pred ccccccccCceecccc
Q psy2824 127 KKKWDDILKEWVPTYG 142 (242)
Q Consensus 127 k~v~DE~~~eW~prwG 142 (242)
=|+||+.++.|+|-=|
T Consensus 9 Vm~~dd~tk~W~P~gg 24 (114)
T d1xoda1 9 VMTRDDSSGGWLQLGG 24 (114)
T ss_dssp EEEECSSSSCEEEGGG
T ss_pred EEEEeCCCCceEecCC
Confidence 4899999999999743
No 4
>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}
Probab=23.91 E-value=23 Score=27.81 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=29.7
Q ss_pred cccccccCce----ecccccccccccccCCceeeCCCC-CCCCcCHHHHHHHHHHH
Q psy2824 128 KKWDDILKEW----VPTYGFKRRLAEKKHQWMLPVPAN-ADPMEDQFAKKSAAQKE 178 (242)
Q Consensus 128 ~v~DE~~~eW----~prwGyk~~~kd~~~~wiiEv~~~-~d~~eDpf~~~~~eKke 178 (242)
++||+..+.. ..|+|..+. ..+.|++|+|.| .|++|+|....++|=.|
T Consensus 63 l~~~~~~~~vlLvrQ~R~~~~~~---~~~~~~lElPAG~id~gE~p~~aA~REL~E 115 (209)
T d1g0sa_ 63 LPFDPVRDEVVLIEQIRIAAYDT---SETPWLLEMVAGMIEEGESVEDVARREAIE 115 (209)
T ss_dssp EEEETTTTEEEEEEEECGGGGGG---SSCSEEEECEEEECCTTCCHHHHHHHHHHH
T ss_pred EEEEecCCeEEEEEEEecccccc---CCCceEEeeceeecCCCcCHHHHHHHHHHh
Confidence 3455544433 245553332 246899999965 57999998876655433
No 5
>d1v43a2 b.40.6.3 (A:304-373) Hypothetical protein PH0022, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=13.17 E-value=24 Score=22.37 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=20.4
Q ss_pred CccccccccccccccccccccCCC
Q psy2824 22 PTTVNKLIELEIDPGTLLAFDKND 45 (242)
Q Consensus 22 ~~~V~k~~~~~~DLGnLla~D~~p 45 (242)
.+.....+.+.||..++..||+..
T Consensus 42 ~~~~g~~i~l~~d~~~~~lFD~~t 65 (70)
T d1v43a2 42 PIEPGREVKVIMDLDMIHVFDKDT 65 (70)
T ss_dssp CCCTTCEEEEEEEGGGCEEEETTT
T ss_pred CCCCCCEEEEEECcccEEEEcchh
Confidence 456778899999999999999864
No 6
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}
Probab=12.66 E-value=40 Score=25.60 Aligned_cols=30 Identities=17% Similarity=0.082 Sum_probs=24.1
Q ss_pred cCCCccccccccccccccccccccCCCCCcc
Q psy2824 19 QFKPTTVNKLIELEIDPGTLLAFDKNDINLG 49 (242)
Q Consensus 19 ~~~~~~V~k~~~~~~DLGnLla~D~~p~~~~ 49 (242)
+.-.+|++..++ .+|-|.+++...-+|...
T Consensus 132 ~~~GvT~h~i~~-~iD~G~Ii~q~~~~i~~~ 161 (206)
T d1fmta2 132 AETGVTIMQMDV-GLDTGDMLYKLSCPITAE 161 (206)
T ss_dssp SEEEEEEEECCS-SSSCSCEEEEEEEECCTT
T ss_pred ceeceeEEEecc-ccChHHhhhhhccccccc
Confidence 344688999877 799999999988888653
No 7
>d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas aeruginosa [TaxId: 287]}
Probab=12.10 E-value=39 Score=23.74 Aligned_cols=13 Identities=38% Similarity=0.698 Sum_probs=11.3
Q ss_pred cHHHHHHHhCCcc
Q psy2824 110 KWEEFALEKGIRK 122 (242)
Q Consensus 110 kWE~FA~~KGI~k 122 (242)
.|+++|+.+||+-
T Consensus 17 ~~~~~a~~~Gi~~ 29 (206)
T d1rkua_ 17 IWIAFAEKTGIDA 29 (206)
T ss_dssp HHHHHHHHHTCGG
T ss_pred HHHHHHHHcCCHH
Confidence 5999999999963
No 8
>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=9.27 E-value=1.5e+02 Score=17.48 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=19.6
Q ss_pred HHhhhhcCCCCCC-CCCCCCcccccHHHHHHHH
Q psy2824 189 RNIARSNKTKVPS-VGVMPHESVLSSRQLREAA 220 (242)
Q Consensus 189 rN~~~a~~~~~~~-~g~~~~~~~~~k~eL~~a~ 220 (242)
|++++..++.+.. .|+-+.++ -+|+|+.+.+
T Consensus 9 rkla~e~gidl~~i~GTG~~GR-Itk~DV~~~i 40 (42)
T d1w85i_ 9 RKYAREKGVDIRLVQGTGKNGR-VLKEDIDAFL 40 (42)
T ss_dssp HHHHHHTTCCTTTSCCCSGGGC-CCHHHHHHHH
T ss_pred HHHHHHcCCCHHHCccCCCCCc-EeHHHHHHHh
Confidence 5677777887643 23333344 7899988764
No 9
>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.95 E-value=47 Score=25.24 Aligned_cols=14 Identities=43% Similarity=0.636 Sum_probs=11.8
Q ss_pred ccccccccCc-eecc
Q psy2824 127 KKKWDDILKE-WVPT 140 (242)
Q Consensus 127 k~v~DE~~~e-W~pr 140 (242)
=|+||+.++. |+|-
T Consensus 15 V~~~d~~tkk~W~P~ 29 (145)
T d1i2ha_ 15 VFQIDPNTKKNWVPT 29 (145)
T ss_dssp EEEECTTSSCCSEES
T ss_pred EEEECCCCCceeEEC
Confidence 4899999975 9995
No 10
>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.78 E-value=63 Score=24.60 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=35.5
Q ss_pred hcCCCccccccccccccccccccccCCCCCcccccCCchHHHHHHHHHHHHHHHHHhhc
Q psy2824 18 EQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLTRDNTQLLINKIWE 76 (242)
Q Consensus 18 ~~~~~~~V~k~~~~~~DLGnLla~D~~p~~~~~~~~~~e~~L~~~ardn~Q~Lin~l~~ 76 (242)
++...+|+++-.+ .+|-|.+++...-+|+.........+.+...+.+.+...++.|-.
T Consensus 125 ~~~~G~Tih~i~~-~iD~G~Il~q~~~~i~~~~t~~~l~~k~~~~~~~l~~~~l~~i~~ 182 (203)
T d2blna2 125 ETETGVTLHRMVK-RADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKH 182 (203)
T ss_dssp CSEEEEEEEECCS-STTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccceeEEeec-cCCCccceeeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445688888765 899999999888777643321122233444455555555555543
Done!