Your job contains 1 sequence.
>psy2824
MTTDLVDHVLQEVARRNEQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLK
DLTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKITMTKWEEFALEKGI
RKTKKVKKKWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERV
ARNEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLE
KS
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2824
(242 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-030131-9345 - symbol:rrs1 "RRS1 ribosome bi... 580 2.5e-56 1
FB|FBgn0052409 - symbol:CG32409 species:7227 "Drosophila ... 566 7.8e-55 1
UNIPROTKB|F1RTZ0 - symbol:RRS1 "Uncharacterized protein" ... 510 6.7e-49 1
UNIPROTKB|F1MPT7 - symbol:RRS1 "Ribosome biogenesis regul... 496 2.0e-47 1
RGD|1311403 - symbol:Rrs1 "RRS1 ribosome biogenesis regul... 495 2.6e-47 1
UNIPROTKB|Q2KIH4 - symbol:RRS1 "Ribosome biogenesis regul... 494 3.3e-47 1
MGI|MGI:1929721 - symbol:Rrs1 "RRS1 ribosome biogenesis r... 493 4.2e-47 1
UNIPROTKB|F1PRD1 - symbol:RRS1 "Uncharacterized protein" ... 490 8.8e-47 1
UNIPROTKB|Q15050 - symbol:RRS1 "Ribosome biogenesis regul... 488 1.4e-46 1
WB|WBGene00007617 - symbol:rrbs-1 species:6239 "Caenorhab... 401 2.4e-37 1
DICTYBASE|DDB_G0274521 - symbol:rrs1 "ribosome biogenesis... 266 4.8e-23 1
CGD|CAL0005046 - symbol:RRS1 species:5476 "Candida albica... 256 5.5e-22 1
UNIPROTKB|Q5ABR3 - symbol:RRS1 "Likely ribosome biogenesi... 256 5.5e-22 1
UNIPROTKB|F1LZ69 - symbol:F1LZ69 "Uncharacterized protein... 240 2.7e-20 1
SGD|S000005820 - symbol:RRS1 "Essential protein that bind... 239 3.5e-20 1
TAIR|locus:2065553 - symbol:AT2G37990 species:3702 "Arabi... 236 7.2e-20 1
UNIPROTKB|F1LZ13 - symbol:F1LZ13 "Uncharacterized protein... 229 4.0e-19 1
POMBASE|SPBC29A3.16 - symbol:rrs1 "ribosome biogenesis pr... 215 1.2e-17 1
UNIPROTKB|G4MQQ2 - symbol:MGG_09302 "Ribosome biogenesis ... 171 5.6e-13 1
ASPGD|ASPL0000010989 - symbol:AN3745 species:162425 "Emer... 165 2.4e-12 1
>ZFIN|ZDB-GENE-030131-9345 [details] [associations]
symbol:rrs1 "RRS1 ribosome biogenesis regulator
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR007023 Pfam:PF04939 ZFIN:ZDB-GENE-030131-9345
PANTHER:PTHR17602 GO:GO:0005634 GO:GO:0042254 KO:K14852 CTD:23212
HOVERGEN:HBG036121 GeneTree:ENSGT00390000005213 OMA:KRKFQPL
EMBL:BX470095 EMBL:BC055615 IPI:IPI00482247 RefSeq:NP_956356.1
UniGene:Dr.76859 STRING:Q7SX91 Ensembl:ENSDART00000125190
GeneID:337399 KEGG:dre:337399 InParanoid:Q7SX91 NextBio:20812217
Uniprot:Q7SX91
Length = 346
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 122/244 (50%), Positives = 162/244 (66%)
Query: 1 MTTDLVDHVLQEVARRN-EQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQDK-DKY 58
M + ++ VL + R E+ K TV K ++LE DPG LLAFDKN ++ + + +K +
Sbjct: 1 MASCSIEDVLAKAERDEAEKLKSITVLKELDLEFDPGLLLAFDKNRLDTRDFKGNKREDC 60
Query: 59 LKDLTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKITM-TKWEEFALE 117
L+ L RDNTQLLIN+IW+LPTER DE IVA LP+PT LPREKP PK TKWE+FA
Sbjct: 61 LRSLARDNTQLLINEIWKLPTERVDEVIVAKLPEPTTKLPREKPAPKPKPPTKWEQFAKL 120
Query: 118 XXXXXXXXXXXXWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQK 177
WD++ KEW +G+KR + K +W++ VPA ADP EDQFAK++ A+K
Sbjct: 121 KGIQKKKKTNLVWDEVHKEWKRRWGYKRAKDDTK-EWLIEVPATADPNEDQFAKRNKAKK 179
Query: 178 ERVARNEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSL 237
ERVARNEY RL+NIAR+ K KVP G++P S + +L +A +A +STAS+GK+Q L
Sbjct: 180 ERVARNEYNRLKNIARAQKVKVPGTGLLP-TSQQTKAELAQAVSLAKISTASVGKFQEKL 238
Query: 238 PLEK 241
P EK
Sbjct: 239 PKEK 242
>FB|FBgn0052409 [details] [associations]
symbol:CG32409 species:7227 "Drosophila melanogaster"
[GO:0042254 "ribosome biogenesis" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR007023 Pfam:PF04939
PANTHER:PTHR17602 GO:GO:0005634 GO:GO:0042254 FlyBase:FBgn0052409
EMBL:AY122167 STRING:Q8MR24 PRIDE:Q8MR24 InParanoid:Q8MR24
ArrayExpress:Q8MR24 Bgee:Q8MR24 Uniprot:Q8MR24
Length = 361
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 118/239 (49%), Positives = 153/239 (64%)
Query: 4 DLVDHVLQEVARRNEQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLT 63
D+V VL + + +++KP TV K +E +D G+LL D ND + ELR +K++YL LT
Sbjct: 14 DVVKEVLAKHQKELDKYKPITVEKHLECRLDVGSLLITDPNDFDDRELRDNKEEYLTALT 73
Query: 64 RDNTQLLINKIWELPTERRDEDIVATLPDPTYILPR-EKPLPKITMTKWEEFALEXXXXX 122
R+NTQLL+N IWELPTER DE IVA LP+PT +LPR KP +TKWE+FA E
Sbjct: 74 RENTQLLVNAIWELPTERVDESIVAKLPEPTTVLPRLRKPPGPRPLTKWEKFAKEKGISK 133
Query: 123 XXXXXXXWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVAR 182
+D+ + +WVPTYGFKR AEK W+L VP NADP D F KK + E+VA+
Sbjct: 134 KKKDKKTYDETMDKWVPTYGFKRAEAEKAKDWVLEVPQNADPNTDMFQKKIDLRNEKVAK 193
Query: 183 NEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEK 241
NE QR++NI R+ K +P G + E+ SS QL A VA STAS+GK+Q LP EK
Sbjct: 194 NEIQRMKNIVRAKKIDMPRSGYLGPEAA-SSSQLLTAVTVAKSSTASVGKFQNKLPKEK 251
>UNIPROTKB|F1RTZ0 [details] [associations]
symbol:RRS1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007080 "mitotic metaphase plate congression"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000794 "condensed
nuclear chromosome" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] InterPro:IPR007023 Pfam:PF04939 PANTHER:PTHR17602
GO:GO:0005783 GO:GO:0005730 GO:GO:0042254 GO:GO:0000794
GO:GO:0007080 GeneTree:ENSGT00390000005213 OMA:KRKFQPL
EMBL:CU855750 Ensembl:ENSSSCT00000006810 Uniprot:F1RTZ0
Length = 372
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 108/240 (45%), Positives = 154/240 (64%)
Query: 6 VDHVLQEVARRN-EQFKPTTVNKLIELEIDPGTLLAFDKND-INLGELRQDKDKYLKDLT 63
V+ +L + R E+ + TV+K +ELE D G LLA D+N L K+ L+ L
Sbjct: 13 VEELLAKAERDEAEKLQRITVHKELELEFDLGNLLASDRNPPTGLRHAGPTKEAELRALA 72
Query: 64 RDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEXXXXX 122
RDNTQLLIN++W+LPTER +E +VA LP+PT LPREKP+P+ +T+W++FA
Sbjct: 73 RDNTQLLINQLWQLPTERVEETLVARLPEPTTRLPREKPVPRPRPLTRWQQFARLKGIRP 132
Query: 123 XXXXXXXWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVAR 182
WD++ +W +G++R + K +W++ VP+NADPMEDQFAK+ A+KERVA+
Sbjct: 133 KKKTNLVWDEVSGQWRRRWGYQRARDDTK-EWLIEVPSNADPMEDQFAKRIQAKKERVAK 191
Query: 183 NEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEKS 242
NE RLRN+AR++K ++PS M S +L A VA VSTAS+G++Q LP EK+
Sbjct: 192 NELNRLRNLARAHKMQLPSAAGMHPTGHQSKEELGRAMQVAKVSTASVGRFQERLPKEKA 251
>UNIPROTKB|F1MPT7 [details] [associations]
symbol:RRS1 "Ribosome biogenesis regulatory protein
homolog" species:9913 "Bos taurus" [GO:0007080 "mitotic metaphase
plate congression" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000794 "condensed nuclear chromosome" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR007023
Pfam:PF04939 PANTHER:PTHR17602 GO:GO:0005783 GO:GO:0005730
GO:GO:0042254 GO:GO:0000794 GO:GO:0007080 IPI:IPI00714645
UniGene:Bt.24869 GeneTree:ENSGT00390000005213 OMA:KRKFQPL
EMBL:DAAA02038676 Ensembl:ENSBTAT00000022217 Uniprot:F1MPT7
Length = 365
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 106/240 (44%), Positives = 152/240 (63%)
Query: 6 VDHVLQEVARRN-EQFKPTTVNKLIELEIDPGTLLAFDKND-INLGELRQDKDKYLKDLT 63
V+ +L + R E+ + TV K +ELE D G LLA D+N L ++ L+ L
Sbjct: 6 VEELLAKAERDEAEKLQRITVLKELELEFDLGNLLASDRNPPTGLRHAGPTQEAELRALA 65
Query: 64 RDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEXXXXX 122
RDNTQLLIN++W+LPTER +E +VA LP+P+ LPREKP+P+ +T+W++FA
Sbjct: 66 RDNTQLLINQLWQLPTERVEEALVARLPEPSTRLPREKPVPRPRPLTRWQQFARLKGIRP 125
Query: 123 XXXXXXXWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVAR 182
WD++ +W +G++R + K +W++ VP NADPMEDQFAK+ A+KERVA+
Sbjct: 126 KKKTNLVWDEVSGQWRRRWGYQRARDDTK-EWLIEVPGNADPMEDQFAKRIQAKKERVAK 184
Query: 183 NEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEKS 242
NE RLRN+AR++K ++PS M S +L A VA VSTAS+G++Q LP EK+
Sbjct: 185 NELNRLRNLARAHKMQLPSAAGMHPTGHQSKEELGRAMQVAKVSTASVGRFQERLPKEKA 244
>RGD|1311403 [details] [associations]
symbol:Rrs1 "RRS1 ribosome biogenesis regulator homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000794
"condensed nuclear chromosome" evidence=IEA;ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005783
"endoplasmic reticulum" evidence=IEA;ISO] [GO:0007080 "mitotic
metaphase plate congression" evidence=IEA;ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0042254 "ribosome biogenesis"
evidence=IEA] InterPro:IPR007023 Pfam:PF04939 RGD:1311403
PANTHER:PTHR17602 GO:GO:0005730 GO:GO:0042254 eggNOG:COG5225
HOGENOM:HOG000017552 KO:K14852 CTD:23212 HOVERGEN:HBG036121
OrthoDB:EOG444KKS GeneTree:ENSGT00390000005213 OMA:KRKFQPL
EMBL:BC128746 IPI:IPI00191512 RefSeq:NP_001073167.1
UniGene:Rn.228976 STRING:A1A5P2 PRIDE:A1A5P2
Ensembl:ENSRNOT00000009482 GeneID:297784 KEGG:rno:297784
UCSC:RGD:1311403 InParanoid:A1A5P2 NextBio:642650
Genevestigator:A1A5P2 Uniprot:A1A5P2
Length = 365
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 109/245 (44%), Positives = 158/245 (64%)
Query: 6 VDHVLQEVARRN-EQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQ---DKDKYLKD 61
V+ +L + + E+ + TV+K +ELE D G LLA D+N + LRQ + L+
Sbjct: 6 VEELLAKAKQEEAEKLQRITVHKELELEFDLGNLLASDRNPPTV--LRQAGPSPEAELRA 63
Query: 62 LTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEXXX 120
L RDNTQLL+N++W+LPTER +E +VA LP+P LPREKPLP+ +T+W++FA
Sbjct: 64 LARDNTQLLVNQLWQLPTERVEEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGI 123
Query: 121 XXXXXXXXXWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERV 180
WD++ +W +G+KR + K +W++ VP +ADPMEDQFAK+ A+KERV
Sbjct: 124 RPKKKTNLVWDEVSGQWRRRWGYKRARDDTK-EWLIEVPGSADPMEDQFAKRIRAKKERV 182
Query: 181 ARNEYQRLRNIARSNKTKVPS-VGVMP--HESVLSSRQLREAADVAVVSTASIGKYQPSL 237
A+NE RLRN+AR++K ++PS G+ P H+S +L A VA VSTAS+G++Q L
Sbjct: 183 AKNELNRLRNLARAHKMQMPSSAGLHPTGHQS---KEELGRAMQVAKVSTASVGRFQERL 239
Query: 238 PLEKS 242
P EK+
Sbjct: 240 PKEKA 244
>UNIPROTKB|Q2KIH4 [details] [associations]
symbol:RRS1 "Ribosome biogenesis regulatory protein
homolog" species:9913 "Bos taurus" [GO:0005730 "nucleolus"
evidence=ISS] [GO:0007080 "mitotic metaphase plate congression"
evidence=ISS] [GO:0000794 "condensed nuclear chromosome"
evidence=ISS] [GO:0042254 "ribosome biogenesis" evidence=IEA]
InterPro:IPR007023 Pfam:PF04939 PANTHER:PTHR17602 GO:GO:0005730
GO:GO:0042254 GO:GO:0000794 GO:GO:0007080 eggNOG:COG5225
HOGENOM:HOG000017552 KO:K14852 EMBL:BC112636 IPI:IPI00714645
RefSeq:NP_001068949.1 UniGene:Bt.24869 STRING:Q2KIH4 PRIDE:Q2KIH4
GeneID:510956 KEGG:bta:510956 CTD:23212 HOVERGEN:HBG036121
InParanoid:Q2KIH4 OrthoDB:EOG444KKS NextBio:20869700 Uniprot:Q2KIH4
Length = 365
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 106/240 (44%), Positives = 151/240 (62%)
Query: 6 VDHVLQEVARRN-EQFKPTTVNKLIELEIDPGTLLAFDKND-INLGELRQDKDKYLKDLT 63
V+ +L + R E+ + TV K +ELE D G LLA D+N L ++ L+ L
Sbjct: 6 VEELLAKAERDEAEKLQRITVLKELELEFDLGNLLASDRNPPTGLRHAGPTQEAELRALA 65
Query: 64 RDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEXXXXX 122
RDNTQLLIN++W+LPTER +E +VA LP+P+ LPREKP+P+ +T+W++FA
Sbjct: 66 RDNTQLLINQLWQLPTERVEEALVARLPEPSTRLPREKPVPRPRPLTRWQQFARLKGIRP 125
Query: 123 XXXXXXXWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVAR 182
WD++ W +G++R + K +W++ VP NADPMEDQFAK+ A+KERVA+
Sbjct: 126 KKKTNLVWDEVSGRWRRRWGYQRARDDTK-EWLIEVPGNADPMEDQFAKRIQAKKERVAK 184
Query: 183 NEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEKS 242
NE RLRN+AR++K ++PS M S +L A VA VSTAS+G++Q LP EK+
Sbjct: 185 NELNRLRNLARAHKMQLPSAAGMHPTGHQSKEELGRAMQVAKVSTASVGRFQERLPKEKA 244
>MGI|MGI:1929721 [details] [associations]
symbol:Rrs1 "RRS1 ribosome biogenesis regulator homolog (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0000794 "condensed
nuclear chromosome" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO;IDA] [GO:0005783 "endoplasmic reticulum"
evidence=IDA] [GO:0007080 "mitotic metaphase plate congression"
evidence=ISO] [GO:0042254 "ribosome biogenesis" evidence=IEA]
InterPro:IPR007023 Pfam:PF04939 MGI:MGI:1929721 PANTHER:PTHR17602
GO:GO:0005783 GO:GO:0005730 GO:GO:0042254 GO:GO:0000794
GO:GO:0007080 eggNOG:COG5225 KO:K14852 CTD:23212 HOVERGEN:HBG036121
OrthoDB:EOG444KKS GeneTree:ENSGT00390000005213 OMA:KRKFQPL
ChiTaRS:RRS1 EMBL:AB041589 EMBL:AK010178 EMBL:AK017683
EMBL:AK019257 EMBL:AK019913 EMBL:AK142041 EMBL:BC003481
EMBL:BC055925 IPI:IPI00318725 RefSeq:NP_067486.2 UniGene:Mm.29061
ProteinModelPortal:Q9CYH6 STRING:Q9CYH6 PhosphoSite:Q9CYH6
PaxDb:Q9CYH6 PRIDE:Q9CYH6 Ensembl:ENSMUST00000072079 GeneID:59014
KEGG:mmu:59014 InParanoid:Q9CYH6 NextBio:314568 Bgee:Q9CYH6
Genevestigator:Q9CYH6 GermOnline:ENSMUSG00000061024 Uniprot:Q9CYH6
Length = 365
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 110/245 (44%), Positives = 157/245 (64%)
Query: 6 VDHVLQEVARRN-EQFKPTTVNKLIELEIDPGTLLAFDKNDINLGELRQ---DKDKYLKD 61
V+ +L + + E+ + TV+K +ELE D G LLA D+N + LRQ + L+
Sbjct: 6 VEELLAKAEQEEAEKLQRITVHKELELEFDLGNLLASDRNPPTV--LRQAGPSPEAELRA 63
Query: 62 LTRDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEXXX 120
L RDNTQLLIN++W LPTER +E +VA LP+P LPREKPLP+ +T+W++FA
Sbjct: 64 LARDNTQLLINQLWRLPTERVEEAVVARLPEPATRLPREKPLPRPRPLTRWQQFARLKGI 123
Query: 121 XXXXXXXXXWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERV 180
WD+ +W +G+KR + K +W++ VP +ADPMEDQFAK++ A+KERV
Sbjct: 124 RPKKKTNLVWDEASGQWRRRWGYKRARDDTK-EWLIEVPGSADPMEDQFAKRTQAKKERV 182
Query: 181 ARNEYQRLRNIARSNKTKVPS-VGVMP--HESVLSSRQLREAADVAVVSTASIGKYQPSL 237
A+NE RLRN+AR++K ++PS G+ P H+S +L A VA VSTAS+G++Q L
Sbjct: 183 AKNELNRLRNLARAHKMQMPSSAGLHPTGHQS---KEELGRAMQVAKVSTASVGRFQERL 239
Query: 238 PLEKS 242
P EK+
Sbjct: 240 PKEKA 244
>UNIPROTKB|F1PRD1 [details] [associations]
symbol:RRS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0007080 "mitotic metaphase plate congression"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000794 "condensed
nuclear chromosome" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] InterPro:IPR007023 Pfam:PF04939 PANTHER:PTHR17602
GO:GO:0005783 GO:GO:0005730 GO:GO:0042254 GO:GO:0000794
GO:GO:0007080 KO:K14852 CTD:23212 GeneTree:ENSGT00390000005213
OMA:KRKFQPL EMBL:AAEX03015838 RefSeq:XP_544107.1
Ensembl:ENSCAFT00000011706 GeneID:486978 KEGG:cfa:486978
Uniprot:F1PRD1
Length = 365
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 105/240 (43%), Positives = 150/240 (62%)
Query: 6 VDHVLQEVARRN-EQFKPTTVNKLIELEIDPGTLLAFDKND-INLGELRQDKDKYLKDLT 63
V+ +L + R E+ + TV+K +ELE D G LLA D N L + L+ L
Sbjct: 6 VEELLAKAERDEAEKLQRITVHKELELEFDLGNLLASDPNPPAGLRRAGPSPEAELQALA 65
Query: 64 RDNTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEXXXXX 122
RDNTQLLIN++W+LPTER +E +VA LP+PT LPREKP+P+ +T+W++FA
Sbjct: 66 RDNTQLLINQLWQLPTERVEEALVARLPEPTTRLPREKPVPRPRPLTRWQQFARLKGIRP 125
Query: 123 XXXXXXXWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVAR 182
WD++ +W +G++R + K +W++ VP ADP+EDQFAK+ A+KERVA+
Sbjct: 126 KKKTNLVWDEVSGQWRRRWGYQRARDDTK-EWLIEVPGGADPLEDQFAKRIQAKKERVAK 184
Query: 183 NEYQRLRNIARSNKTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEKS 242
NE RLRN+AR++K ++PS M S +L A VA VSTAS+G++Q LP EK+
Sbjct: 185 NELNRLRNLARAHKMQLPSAAGMHPTGHQSKEELGRAMQVAKVSTASVGRFQERLPKEKA 244
>UNIPROTKB|Q15050 [details] [associations]
symbol:RRS1 "Ribosome biogenesis regulatory protein
homolog" species:9606 "Homo sapiens" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0007080 "mitotic
metaphase plate congression" evidence=IMP] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR007023 Pfam:PF04939
PANTHER:PTHR17602 GO:GO:0005783 GO:GO:0005730 GO:GO:0042254
GO:GO:0000794 GO:GO:0007080 eggNOG:COG5225 HOGENOM:HOG000017552
KO:K14852 CTD:23212 HOVERGEN:HBG036121 OrthoDB:EOG444KKS
OMA:KRKFQPL EMBL:D25218 EMBL:BC001811 EMBL:BC013043 IPI:IPI00014253
RefSeq:NP_055984.1 UniGene:Hs.71827 ProteinModelPortal:Q15050
IntAct:Q15050 MINT:MINT-1485279 STRING:Q15050 PhosphoSite:Q15050
DMDM:21431847 SWISS-2DPAGE:Q15050 PaxDb:Q15050 PeptideAtlas:Q15050
PRIDE:Q15050 DNASU:23212 Ensembl:ENST00000320270 GeneID:23212
KEGG:hsa:23212 UCSC:uc003xwa.3 GeneCards:GC08P067341
HGNC:HGNC:17083 neXtProt:NX_Q15050 PharmGKB:PA134993138
InParanoid:Q15050 ChiTaRS:RRS1 GenomeRNAi:23212 NextBio:44767
Bgee:Q15050 CleanEx:HS_RRS1 Genevestigator:Q15050
GermOnline:ENSG00000179041 Uniprot:Q15050
Length = 365
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 103/226 (45%), Positives = 145/226 (64%)
Query: 18 EQFKPTTVNKLIELEIDPGTLLAFDKND-INLGELRQDKDKYLKDLTRDNTQLLINKIWE 76
E+ + TV+K +EL+ D G LLA D+N L + L+ L RDNTQLLIN++W+
Sbjct: 19 EKLQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAELQALARDNTQLLINQLWQ 78
Query: 77 LPTERRDEDIVATLPDPTYILPREKPLPKIT-MTKWEEFALEXXXXXXXXXXXXWDDILK 135
LPTER +E IVA LP+PT LPREKPLP+ +T+W++FA WD++
Sbjct: 79 LPTERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSG 138
Query: 136 EWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVARNEYQRLRNIARSN 195
+W +G++R + K +W++ VP NADP+EDQFAK+ A+KERVA+NE RLRN+AR++
Sbjct: 139 QWRRRWGYQRARDDTK-EWLIEVPGNADPLEDQFAKRIQAKKERVAKNELNRLRNLARAH 197
Query: 196 KTKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEK 241
K ++PS + S +L A VA VSTAS+G++Q LP EK
Sbjct: 198 KMQLPSAAGLHPTGHQSKEELGRAMQVAKVSTASVGRFQERLPKEK 243
>WB|WBGene00007617 [details] [associations]
symbol:rrbs-1 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0016477 "cell
migration" evidence=IMP] InterPro:IPR007023 Pfam:PF04939
PANTHER:PTHR17602 GO:GO:0005634 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0042254 GO:GO:0040019 EMBL:Z81035 eggNOG:COG5225
HOGENOM:HOG000017552 KO:K14852 PIR:T19313 RefSeq:NP_506573.1
ProteinModelPortal:Q9XVT0 DIP:DIP-24987N MINT:MINT-1119887
STRING:Q9XVT0 PaxDb:Q9XVT0 EnsemblMetazoa:C15H11.9.1
EnsemblMetazoa:C15H11.9.2 GeneID:179942 KEGG:cel:CELE_C15H11.9
UCSC:C15H11.9.1 CTD:179942 WormBase:C15H11.9
GeneTree:ENSGT00390000005213 InParanoid:Q9XVT0 OMA:KRKFQPL
NextBio:907486 Uniprot:Q9XVT0
Length = 333
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 99/231 (42%), Positives = 134/231 (58%)
Query: 21 KPTTVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLTRDNTQLLINKIWELPTE 80
K T V K I+ ID G LL D+ I G D + L++ R NTQLL N IW+L +
Sbjct: 4 KSTEVEKAIDPIIDLGNLLFIDREPIQ-G----DASEGLEERARKNTQLLFNNIWQLEQK 58
Query: 81 RRDEDIVATLPDPTYILPREKPLP-KITMTKWEEFALEXXXXXXXXXXXXWDDILKEWVP 139
R +E I+ TLP TY LPREK LP K TKWE++A E +D+ KEW P
Sbjct: 59 RVEEAIIVTLPPATYRLPREKRLPEKKEPTKWEKYAAEKGIEKRKKDKKVFDEATKEWKP 118
Query: 140 TYGFKRRLAEKKHQWMLPVPANA-DPMEDQFAKKSAAQKERVARNEYQRLRNIARSNKTK 198
TYG++R + K W++ +P NA DP +D FA++ +KERVA+N+ QR++N+AR KT
Sbjct: 119 TYGYRRGNDDTK-DWLIEIPDNAEDPNKDFFAERREKKKERVAKNDMQRMKNLARQMKTT 177
Query: 199 V---PS----VGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEKS 242
V PS +GV S +Q+R A D A ++TAS GK+Q L EK+
Sbjct: 178 VKSGPSTEKMIGVGVDAKEKSKQQVRFAVDRAKLATASAGKFQEGLKGEKA 228
>DICTYBASE|DDB_G0274521 [details] [associations]
symbol:rrs1 "ribosome biogenesis regulatory protein"
species:44689 "Dictyostelium discoideum" [GO:0042254 "ribosome
biogenesis" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=IEA;ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030687 "preribosome, large subunit precursor" evidence=ISS]
InterPro:IPR007023 Pfam:PF04939 dictyBase:DDB_G0274521
PANTHER:PTHR17602 GO:GO:0005634 GenomeReviews:CM000151_GR
GO:GO:0042254 EMBL:AAFI02000012 GO:GO:0030687 eggNOG:COG5225
KO:K14852 OMA:KRKFQPL RefSeq:XP_644082.1 STRING:Q869Q2
EnsemblProtists:DDB0304994 GeneID:8619511 KEGG:ddi:DDB_G0274521
ProtClustDB:CLSZ2729207 Uniprot:Q869Q2
Length = 317
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 65/214 (30%), Positives = 111/214 (51%)
Query: 34 DPGTLLAFDKNDINLGELRQDKDKYLKDLTRDNTQLLINKIWELPTERRDEDIVATLPDP 93
D G L AFD + +N E + + ++Y+ L+RDN QLLI+++++LP + +E +A LP
Sbjct: 30 DLGNLTAFDHSSLNKTEYKSNPNEYINKLSRDNVQLLISRLFQLPIKEIEEGSLALLPRC 89
Query: 94 TYILPREKPLPKIT-MTKWEEFALEXXXXXXXXXXXXWDDILKEWVPTYGFKRRLAEKKH 152
T +PRE+ LP T+WE FA WD +E+ PT+G+K+ + +
Sbjct: 90 TTPIPRERSLPTSKPKTRWEAFAEIKGIKKKKKSSMEWDKEHEEYRPTFGYKKA-NDVAN 148
Query: 153 QWMLPVPANADPMEDQFAKKSAAQKERVARNEYQRLRNIARSNKTKVPSVGVM-----PH 207
W + + ED F K + +RV++ + + RN ++ ++ +VG H
Sbjct: 149 DWAMLARPDDKVGEDPFKKLEDEKNDRVSKQKKREQRNFDEASMRQMSNVGKTLSFDKEH 208
Query: 208 ESVLSSRQLREAADVAVVSTASIGKYQPSLPLEK 241
+ S + + DVA +STAS+GK+ + EK
Sbjct: 209 RGQIKS-DMEKVFDVAKLSTASLGKFDKRVENEK 241
>CGD|CAL0005046 [details] [associations]
symbol:RRS1 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0035690 "cellular response to
drug" evidence=IMP] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0034399 "nuclear periphery" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000055 "ribosomal large subunit
export from nucleus" evidence=IEA] [GO:0000447 "endonucleolytic
cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=IEA] InterPro:IPR007023 Pfam:PF04939 CGD:CAL0005046
PANTHER:PTHR17602 GO:GO:0005634 GO:GO:0042254 GO:GO:0035690
EMBL:AACQ01000035 KO:K14852 RefSeq:XP_718976.1 STRING:Q5ABR3
GeneID:3639352 KEGG:cal:CaO19.6014 Uniprot:Q5ABR3
Length = 205
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 69/195 (35%), Positives = 99/195 (50%)
Query: 18 EQFKPTTVNKLIELEIDPGTLLAFDKNDI-NLGELRQD---KDKYLKDLTRDNTQLLINK 73
+++KP TV+K I D G L FD N + N L +D K+ +L+ +TRDN QLLIN+
Sbjct: 5 KEYKPVTVDKPIPNTYDLGNLATFDPNPLDNEKLLSKDESIKEDHLQSVTRDNVQLLINQ 64
Query: 74 IWELP----TERRDEDI-------VATLPDPTYILPREKPLPKIT-MTKWEEFALEXXXX 121
I LP TE + LP+PT ILPREKP+PK +TKW++FA
Sbjct: 65 ILSLPVKITTETHGSSTGQNSTMTLIQLPEPTTILPREKPIPKAKPLTKWQQFAARKGIK 124
Query: 122 -XXXXXXXXWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAK----KSAAQ 176
+D+ EWVP +G+K + QW++ V ED+ K A +
Sbjct: 125 PKAKDGKMVYDEDTGEWVPKWGYKGKNKSIDDQWLVEVDDKVKNTEDELIDPRTLKRAER 184
Query: 177 KERVARNEYQRLRNI 191
K+ + +NE Q RN+
Sbjct: 185 KKLIKKNELQHKRNL 199
>UNIPROTKB|Q5ABR3 [details] [associations]
symbol:RRS1 "Likely ribosome biogenesis regulatory protein
Rrs1p" species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] [GO:0035690 "cellular response to
drug" evidence=IMP] InterPro:IPR007023 Pfam:PF04939 CGD:CAL0005046
PANTHER:PTHR17602 GO:GO:0005634 GO:GO:0042254 GO:GO:0035690
EMBL:AACQ01000035 KO:K14852 RefSeq:XP_718976.1 STRING:Q5ABR3
GeneID:3639352 KEGG:cal:CaO19.6014 Uniprot:Q5ABR3
Length = 205
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 69/195 (35%), Positives = 99/195 (50%)
Query: 18 EQFKPTTVNKLIELEIDPGTLLAFDKNDI-NLGELRQD---KDKYLKDLTRDNTQLLINK 73
+++KP TV+K I D G L FD N + N L +D K+ +L+ +TRDN QLLIN+
Sbjct: 5 KEYKPVTVDKPIPNTYDLGNLATFDPNPLDNEKLLSKDESIKEDHLQSVTRDNVQLLINQ 64
Query: 74 IWELP----TERRDEDI-------VATLPDPTYILPREKPLPKIT-MTKWEEFALEXXXX 121
I LP TE + LP+PT ILPREKP+PK +TKW++FA
Sbjct: 65 ILSLPVKITTETHGSSTGQNSTMTLIQLPEPTTILPREKPIPKAKPLTKWQQFAARKGIK 124
Query: 122 -XXXXXXXXWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAK----KSAAQ 176
+D+ EWVP +G+K + QW++ V ED+ K A +
Sbjct: 125 PKAKDGKMVYDEDTGEWVPKWGYKGKNKSIDDQWLVEVDDKVKNTEDELIDPRTLKRAER 184
Query: 177 KERVARNEYQRLRNI 191
K+ + +NE Q RN+
Sbjct: 185 KKLIKKNELQHKRNL 199
>UNIPROTKB|F1LZ69 [details] [associations]
symbol:F1LZ69 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] InterPro:IPR007023 Pfam:PF04939
PANTHER:PTHR17602 GO:GO:0005634 GO:GO:0042254 IPI:IPI00778435
Ensembl:ENSRNOT00000061434 Uniprot:F1LZ69
Length = 269
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 61/179 (34%), Positives = 94/179 (52%)
Query: 66 NTQLLINKIWELPTERRDEDIVATLPDPTYILPREKPLPK-ITMTKWEEFALEXXXXXXX 124
NT+LL+NK+W+L TE+ DE V +P L +KPL + +T +++F
Sbjct: 1 NTKLLMNKLWQLLTEQVDEVAVVYFQEPATGLAWQKPLHHPLPLTCFQQFECIKGIRPKK 60
Query: 125 XXXXXWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVARNE 184
++ +W G+K + K +W+ VP + MEDQF K A KE VA+NE
Sbjct: 61 RTNILCHRVISQWCYCCGYKLSKDDTK-EWLTEVPGSIGSMEDQFTKMIQAMKECVAKNE 119
Query: 185 YQRLRNIARSNKTKVP-SVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEKS 242
L+N+A ++K ++P S G+ P ++ S L VA STA +G +Q LP EK+
Sbjct: 120 LNHLQNLAIAHKMQMPRSAGLHPWDT--SKDYLSRTMQVAKFSTALVGCFQECLPKEKA 176
>SGD|S000005820 [details] [associations]
symbol:RRS1 "Essential protein that binds ribosomal protein
L11" species:4932 "Saccharomyces cerevisiae" [GO:0034399 "nuclear
periphery" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0042273
"ribosomal large subunit biogenesis" evidence=IMP] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0003674
"molecular_function" evidence=ND] [GO:0000055 "ribosomal large
subunit export from nucleus" evidence=IMP] InterPro:IPR007023
Pfam:PF04939 SGD:S000005820 PANTHER:PTHR17602 GO:GO:0005654
GO:GO:0005730 EMBL:BK006948 GO:GO:0042273 GO:GO:0030687
GO:GO:0034399 GO:GO:0000055 GO:GO:0000447 eggNOG:COG5225 KO:K14852
GeneTree:ENSGT00390000005213 HOGENOM:HOG000180297 OrthoDB:EOG4WWVV5
EMBL:Z75202 PIR:S67198 RefSeq:NP_014937.1 ProteinModelPortal:Q08746
DIP:DIP-4081N IntAct:Q08746 MINT:MINT-484080 STRING:Q08746
PaxDb:Q08746 PeptideAtlas:Q08746 EnsemblFungi:YOR294W GeneID:854469
KEGG:sce:YOR294W CYGD:YOR294w OMA:HKRNLKN NextBio:976762
Genevestigator:Q08746 GermOnline:YOR294W Uniprot:Q08746
Length = 203
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 64/193 (33%), Positives = 97/193 (50%)
Query: 18 EQFK--PTTVNKLIELEIDPGTLLAFDKNDINLGELRQD---KDKYLKDLTRDNTQLLIN 72
E +K P TV K I + D G L AFD N ++ +L +++ +K LTRDN QLLIN
Sbjct: 4 EDYKNLPVTVEKPIPVVYDLGNLAAFDSNVLDKNDLDSSNARREEKIKSLTRDNVQLLIN 63
Query: 73 KIWELPTERRDEDIVAT-----------LPDPTYILPREKPLPKI-TMTKWEEFALEXXX 120
++ LP + E + T LPDPT LPREKPLPK MTKWE+FA +
Sbjct: 64 QLLSLPMKTTTESVGGTGGQSSVMTLLQLPDPTTDLPREKPLPKAKAMTKWEKFAAKKGI 123
Query: 121 X-XXXXXXXXWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKK---SAAQ 176
+D+ EWVP +G+K + QW++ V +++ + A+
Sbjct: 124 KPKERAGKMIYDEASGEWVPKWGYKGANKKLDDQWLVEVDDKVKGTDNELIDPRTLNRAE 183
Query: 177 KERVARNEYQRLR 189
++R+ + ++ R
Sbjct: 184 RKRLVKKNEKQQR 196
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 53/165 (32%), Positives = 82/165 (49%)
Query: 42 DKNDINLGELR-QDKDKYL-KDLTRDNTQLLINKIWELPTER----RDEDIVATL---PD 92
DKND++ R ++K K L +D + L++ + TE + V TL PD
Sbjct: 35 DKNDLDSSNARREEKIKSLTRDNVQLLINQLLSLPMKTTTESVGGTGGQSSVMTLLQLPD 94
Query: 93 PTYILPREKPLPKI-TMTKWEEFALEXXXX-XXXXXXXXWDDILKEWVPTYGFKRRLAEK 150
PT LPREKPLPK MTKWE+FA + +D+ EWVP +G+K +
Sbjct: 95 PTTDLPREKPLPKAKAMTKWEKFAAKKGIKPKERAGKMIYDEASGEWVPKWGYKGANKKL 154
Query: 151 KHQWMLPVPANADPMEDQFAKK---SAAQKER-VARNEYQRLRNI 191
QW++ V +++ + A+++R V +NE Q+ RN+
Sbjct: 155 DDQWLVEVDDKVKGTDNELIDPRTLNRAERKRLVKKNEKQQRRNM 199
>TAIR|locus:2065553 [details] [associations]
symbol:AT2G37990 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006406 "mRNA export from nucleus" evidence=RCA] [GO:0006606
"protein import into nucleus" evidence=RCA] [GO:0006626 "protein
targeting to mitochondrion" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009909 "regulation of
flower development" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] InterPro:IPR007023 Pfam:PF04939
PANTHER:PTHR17602 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005730 GO:GO:0042254 EMBL:AY088030 EMBL:AK222003
IPI:IPI00540167 PIR:F84799 RefSeq:NP_565878.1 UniGene:At.14638
UniGene:At.66348 STRING:Q9SH88 PaxDb:Q9SH88 PRIDE:Q9SH88
EnsemblPlants:AT2G37990.1 GeneID:818377 KEGG:ath:AT2G37990
TAIR:At2g37990 eggNOG:COG5225 HOGENOM:HOG000017552
InParanoid:Q9SH88 KO:K14852 OMA:MAYDPSH PhylomeDB:Q9SH88
ProtClustDB:CLSN2917262 Genevestigator:Q9SH88 GermOnline:AT2G37990
Uniprot:Q9SH88
Length = 318
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 69/227 (30%), Positives = 109/227 (48%)
Query: 32 EIDPGTLLAFDKNDINLGELRQDKDKYLKDLTRDNTQL---LINKIWELP-TERRDEDIV 87
++D G LLAF+ N + + +K++ + T+L + NK++ P TE D IV
Sbjct: 12 QVDVGNLLAFNPNH-RFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTETNDGPIV 70
Query: 88 ATLPDPTYILPREKPLPKITM-TKWEEFALEXXXXXXXXXXXXWDDILKEWVPTYGFKRR 146
LP PT LPREK +P+ TKWEEFAL+ WD+ ++ +G+ R
Sbjct: 71 Q-LPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRRHGYDR- 128
Query: 147 LAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVARNEYQRLRNIARSNK---------- 196
+ + ++ + +P D FAK+ +K+RV + E RL+N+ + K
Sbjct: 129 VNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALPSHVQL 188
Query: 197 --TKVPSVGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEK 241
T +P G + +L + A +A STAS GK+ LP EK
Sbjct: 189 AATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEK 235
>UNIPROTKB|F1LZ13 [details] [associations]
symbol:F1LZ13 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] InterPro:IPR007023 Pfam:PF04939
PANTHER:PTHR17602 GO:GO:0005634 GO:GO:0042254 IPI:IPI00778086
Ensembl:ENSRNOT00000061441 Uniprot:F1LZ13
Length = 260
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 54/162 (33%), Positives = 85/162 (52%)
Query: 83 DEDIVATLPDPTYILPREKPLPK-ITMTKWEEFALEXXXXXXXXXXXXWDDILKEWVPTY 141
DE +V L P LP+EKPL + + +T +++F D + +W
Sbjct: 1 DEAVVERLQQPATHLPQEKPLHQPLLLTHFQQFECLKGISPKKRKNILCDKVSSQWQSCC 60
Query: 142 GFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVARNEYQRLRNIARSNKTKVPS 201
G+K + K +W++ VP +ADPMEDQF K+ A +E +A+NE L+N+ +K ++PS
Sbjct: 61 GYKLVQDDTK-EWLIEVPGSADPMEDQFTKRIQANRELMAKNELNHLQNLVHVHKMQMPS 119
Query: 202 -VGVMPHESVLSSRQLREAADVAVVSTASIGKYQPSLPLEKS 242
+M H+S L VA VSTAS+G ++ P E +
Sbjct: 120 SASLMGHQS---KEDLGHTMQVAKVSTASLGCFRERFPKENA 158
>POMBASE|SPBC29A3.16 [details] [associations]
symbol:rrs1 "ribosome biogenesis protein Rrs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006364
"rRNA processing" evidence=ISO] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR007023 Pfam:PF04939 PomBase:SPBC29A3.16
PANTHER:PTHR17602 GO:GO:0005730 EMBL:CU329671 GO:GO:0006364
eggNOG:COG5225 KO:K14852 PIR:T40087 RefSeq:NP_595844.1
IntAct:O59678 STRING:O59678 PRIDE:O59678 EnsemblFungi:SPBC29A3.16.1
GeneID:2540324 KEGG:spo:SPBC29A3.16 HOGENOM:HOG000180297
OMA:TRARREK OrthoDB:EOG4WWVV5 NextBio:20801453 Uniprot:O59678
Length = 166
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 47/135 (34%), Positives = 75/135 (55%)
Query: 25 VNKLIELEIDPGTLLAFDKNDINLGELR-QDKDKYLKDLTRDNTQLLINKIWELPTERRD 83
+ I L+ D G + AFD + ++ +L +K+ +L L+RDN Q L+NK+ LP ER
Sbjct: 5 IENSIPLDFDLGNMAAFDISPLDETKLSGSEKESFLFSLSRDNVQQLVNKMISLPKERTS 64
Query: 84 EDIVATLPDPTYILPREKPLPKITM-TKWEEFA-LEXXXXXXXXXXXXWDDILKEWVPTY 141
+ ++ LP+ LPR KPLPK TKW+ FA ++ +D+ EWVP +
Sbjct: 65 DGVLLQLPETVTPLPRAKPLPKPKPETKWQRFARIKGIAPKKREGRLVFDEASGEWVPKW 124
Query: 142 GFKRRLAEKKHQWML 156
G+K + E + QW++
Sbjct: 125 GYKGKNKELETQWLV 139
>UNIPROTKB|G4MQQ2 [details] [associations]
symbol:MGG_09302 "Ribosome biogenesis protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR007023 Pfam:PF04939
PANTHER:PTHR17602 GO:GO:0005634 GO:GO:0042254 EMBL:CM001231
KO:K14852 RefSeq:XP_003709951.1 EnsemblFungi:MGG_09302T0
GeneID:2680165 KEGG:mgr:MGG_09302 Uniprot:G4MQQ2
Length = 193
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 52/178 (29%), Positives = 79/178 (44%)
Query: 22 PTTVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLTRDNTQLLINKIWEL-PTE 80
P VNK D LLA D N + L + D + L L RD Q LIN++ P +
Sbjct: 11 PVAVNKPTPYSFDLALLLANDPNPVELD--KTDLEGSLSSLARDGAQALINQLLTTCPIQ 68
Query: 81 RRDEDIVATLPDPTYILPREKPLPKITM-TKWEEFALEXXX---XXXXXXXXXWDDILKE 136
++ +LP LPREKPLP TKWE FA + +++ E
Sbjct: 69 STPSGVLLSLPAQQTALPREKPLPAAKEPTKWERFAAKKGIKPKTREQRRNIQYNEEKGE 128
Query: 137 WVPTYGFKRRLAEKKHQWMLPV-PANADPMEDQFAKKSAAQKERVAR---NEYQRLRN 190
W +G+K + + W++ V PA +++ + ++ERV R NE + +N
Sbjct: 129 WERKWGYKGANKQLEKDWLVEVDPAKEAKLKEGETLRGQTRRERVERQKRNERKMRKN 186
>ASPGD|ASPL0000010989 [details] [associations]
symbol:AN3745 species:162425 "Emericella nidulans"
[GO:0000055 "ribosomal large subunit export from nucleus"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0034399 "nuclear
periphery" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR007023
Pfam:PF04939 PANTHER:PTHR17602 GO:GO:0005634 GO:GO:0042254
EMBL:BN001302 EMBL:AACD01000061 eggNOG:COG5225 KO:K14852
HOGENOM:HOG000180297 OrthoDB:EOG4WWVV5 RefSeq:XP_661349.1
STRING:Q5B6T5 EnsemblFungi:CADANIAT00004978 GeneID:2873169
KEGG:ani:AN3745.2 OMA:KMRANER Uniprot:Q5B6T5
Length = 218
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 54/186 (29%), Positives = 82/186 (44%)
Query: 22 PTTVNKLIELEIDPGTLLAFDKNDINLGELRQDKDKYLKDLTRDNTQLLINKIWEL-PTE 80
P TV+K D G LLA D N + L + + + LK RD Q L+N++ P
Sbjct: 20 PITVSKPTPYTFDLGHLLANDPNPLELPK-SEPLNASLKATARDGVQSLLNQLLTTCPIT 78
Query: 81 RRDEDIVATLPDPTYILPREKPLPKITM-TKWEEFALE------------XXXXXXXXXX 127
+ ++ TLP P+ ILPR KPLP TKWE FA +
Sbjct: 79 SSQQGVLLTLPAPSTILPRHKPLPTPKPPTKWELFARKKGIGKYSNKPGAALADKERRKK 138
Query: 128 XXWDDILKEWVPTYGFKRRLAEKKHQWMLPVPANADPMEDQFAKKSAAQKERVARNEYQR 187
+D+ EWVP +G+K + + QW++ V E++ A K ++ + +R
Sbjct: 139 LVYDEESGEWVPRWGYKGKNKDDD-QWLVEVKEKDWKKEEEAAAKGSSIRGMSRAERKER 197
Query: 188 LRNIAR 193
+R R
Sbjct: 198 IRRNER 203
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 242 230 0.00083 113 3 11 23 0.45 33
32 0.42 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 20
No. of states in DFA: 574 (61 KB)
Total size of DFA: 181 KB (2104 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.18u 0.10s 22.28t Elapsed: 00:00:03
Total cpu time: 22.19u 0.10s 22.29t Elapsed: 00:00:03
Start: Thu Aug 15 12:45:32 2013 End: Thu Aug 15 12:45:35 2013