RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2824
         (242 letters)



>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 243

 Score = 29.9 bits (67), Expect = 0.25
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 197 TKVPSVGVMPHESVLSSRQLREAADVAVV 225
            KV    V P+ + LS  QL E  D    
Sbjct: 173 PKVSDTVVEPYNATLSVHQLVENTDETYC 201


>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter
           dejongeii [TaxId: 48465]}
          Length = 244

 Score = 29.2 bits (65), Expect = 0.38
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 197 TKVPSVGVMPHESVLSSRQLREAADVAVV 225
            +V SV   P+ +V +   LR +AD  ++
Sbjct: 175 PQVSSVVTEPYNTVFALNTLRRSADACLI 203


>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 245

 Score = 29.2 bits (65), Expect = 0.39
 Identities = 8/29 (27%), Positives = 16/29 (55%)

Query: 197 TKVPSVGVMPHESVLSSRQLREAADVAVV 225
            +V +  V P+ S+L++    E +D A +
Sbjct: 175 PQVSTAVVEPYNSILTTHTTLEHSDCAFM 203


>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 393

 Score = 28.0 bits (60), Expect = 1.0
 Identities = 7/66 (10%), Positives = 17/66 (25%), Gaps = 11/66 (16%)

Query: 73  KIWELPTERRDEDIVATLPDPTYILPREKPLPKITMTKWE-EFALEKGIRKTKKVKKKWD 131
           K   +P  R + +        T          K+     E  +  +  +        ++ 
Sbjct: 319 KKMTVPNPRVEAEEHYYNAKHT----------KLMELGLEPHYLSDSLLDSLLNFAVQFK 368

Query: 132 DILKEW 137
           D +   
Sbjct: 369 DRVDTK 374


>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 335

 Score = 25.5 bits (55), Expect = 6.1
 Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 9/50 (18%)

Query: 104 PKITMTKWEEFALEKGIRKTKKVKKKWDDILKEWVPTYG-----FKRRLA 148
           P+     +++  L+ G     +   KW+ +  E+   +        RRL+
Sbjct: 288 PQEVYDHYQKTILKPG----VEANNKWNKLFSEYQKKFPELGAELARRLS 333


>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
           (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 824

 Score = 25.4 bits (55), Expect = 7.3
 Identities = 11/81 (13%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 73  KIWELPTERRDEDIVATLPDPTYILPREKPLPKITMTKWEEFALEKGIRKTKKVKKKWDD 132
            + E+  ER  E+ ++ L     +L       +  +    +   E  ++    +++++  
Sbjct: 487 GLAEIIAERIGEEYISDLDQLRKLLSY--VDDEAFIRDVAKVKQENKLKFAAYLEREYKV 544

Query: 133 ILKEWVPTYGFKRRLAEKKHQ 153
            +          +R+ E K Q
Sbjct: 545 HINPNSLFDVQVKRIHEYKRQ 565


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0694    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 907,648
Number of extensions: 43985
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 11
Length of query: 242
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,268,006
Effective search space: 201612954
Effective search space used: 201612954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (23.9 bits)